Metagenome / Metatranscriptome Family F103580

Basic Information
Family ID	F103580
Family Type	Metagenome / Metatranscriptome
Number of Sequences	101
Average Sequence Length	40 residues
Representative Sequence	MRLRTRLNLVVAGLTAVFVAVLIAAEIQSTRSSVREEIEAAN
Number of Associated Samples	97
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	33.66 %
% of genes near scaffold ends (potentially truncated)	99.01 %
% of genes from short scaffolds (< 2000 bps)	91.09 %
Associated GOLD sequencing projects	96
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.60

Most Common Taxonomy
Group	Bacteria (72.277 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (9.901 % of family members)
Environment Ontology (ENVO)	Unclassified (15.842 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (43.564 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 55.71% β-sheet: 0.00% Coil/Unstructured: 44.29%
Feature Viewer

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Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF12706	Lactamase_B_2	26.73
PF08042	PqqA	15.84
PF05402	PqqD	5.94
PF07715	Plug	2.97
PF04055	Radical_SAM	2.97
PF03070	TENA_THI-4	2.97
PF00756	Esterase	0.99
PF16491	Peptidase_M48_N	0.99

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	72.28 %
Unclassified	root	N/A	27.72 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	72.28 %
Unclassified	root	N/A	27.72 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	72.28 %
Unclassified	root	N/A	27.72 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	70.30 %
Unclassified	root	N/A	27.72 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.72 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	20.79 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	14.85 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.99 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.72 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	14.85 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	8.91 %
Cellvibrionales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales	1.98 %
Nevskiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales	0.99 %
Rhodocyclales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales	0.99 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	0.99 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.72 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	8.91 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	6.93 %
Burkholderiales genera incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis	3.96 %
Halieaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae	1.98 %
Sinobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae	0.99 %
Azonexaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Azonexaceae	0.99 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.99 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.72 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	8.91 %
Ideonella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella	3.96 %
unclassified Halieaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae → unclassified Halieaceae	1.98 %
Hydrocarboniphaga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Hydrocarboniphaga	0.99 %
unclassified Comamonadaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → unclassified Comamonadaceae	0.99 %
Dechloromonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Azonexaceae → Dechloromonas	0.99 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.99 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.72 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	8.91 %
Ideonella sakaiensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella → Ideonella sakaiensis	3.96 %
marine gamma proteobacterium HTCC2080	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae → unclassified Halieaceae → marine gamma proteobacterium HTCC2080	1.98 %
Comamonadaceae bacterium URHA0028	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → unclassified Comamonadaceae → Comamonadaceae bacterium URHA0028	0.99 %
Dechloromonas aromatica	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Azonexaceae → Dechloromonas → Dechloromonas aromatica	0.99 %
Hydrocarboniphaga effusa	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Hydrocarboniphaga → Hydrocarboniphaga effusa	0.99 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.99 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.72 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	8.91 %
Ideonella sakaiensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella → Ideonella sakaiensis	3.96 %
marine gamma proteobacterium HTCC2080	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae → unclassified Halieaceae → marine gamma proteobacterium HTCC2080	1.98 %
Hydrocarboniphaga effusa AP103	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Hydrocarboniphaga → Hydrocarboniphaga effusa → Hydrocarboniphaga effusa AP103	0.99 %
Comamonadaceae bacterium URHA0028	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → unclassified Comamonadaceae → Comamonadaceae bacterium URHA0028	0.99 %
Dechloromonas aromatica	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Azonexaceae → Dechloromonas → Dechloromonas aromatica	0.99 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.99 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	0.99 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001545\|JGI12630J15595_10030463	All Organisms → cellular organisms → Bacteria → Proteobacteria	1117	Open in IMG/M
3300004091\|Ga0062387_100031587	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2345	Open in IMG/M
3300004092\|Ga0062389_104082869	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Azonexaceae → Dechloromonas → Dechloromonas aromatica	549	Open in IMG/M
3300005175\|Ga0066673_10093003	All Organisms → cellular organisms → Bacteria → Proteobacteria	1606	Open in IMG/M
3300005337\|Ga0070682_101059293	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	677	Open in IMG/M
3300005345\|Ga0070692_10147422	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → unclassified Comamonadaceae → Comamonadaceae bacterium URHA0028	1337	Open in IMG/M
3300005434\|Ga0070709_10825177	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	729	Open in IMG/M
3300005530\|Ga0070679_101718068	All Organisms → cellular organisms → Bacteria → Proteobacteria	576	Open in IMG/M
3300005533\|Ga0070734_10217775	All Organisms → cellular organisms → Bacteria → Proteobacteria	1098	Open in IMG/M
3300005537\|Ga0070730_11051347	Not Available	506	Open in IMG/M
3300005578\|Ga0068854_100585449	All Organisms → cellular organisms → Bacteria → Proteobacteria	951	Open in IMG/M
3300005614\|Ga0068856_101300536	All Organisms → cellular organisms → Bacteria → Proteobacteria	742	Open in IMG/M
3300005842\|Ga0068858_101852009	All Organisms → cellular organisms → Bacteria → Proteobacteria	596	Open in IMG/M
3300006176\|Ga0070765_101969739	All Organisms → cellular organisms → Bacteria → Proteobacteria	547	Open in IMG/M
3300006237\|Ga0097621_100875408	All Organisms → cellular organisms → Bacteria → Proteobacteria	835	Open in IMG/M
3300006903\|Ga0075426_10928812	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	657	Open in IMG/M
3300009095\|Ga0079224_102252300	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	775	Open in IMG/M
3300009627\|Ga0116109_1044898	Not Available	828	Open in IMG/M
3300009632\|Ga0116102_1196650	Not Available	543	Open in IMG/M
3300009644\|Ga0116121_1218381	All Organisms → cellular organisms → Bacteria → Proteobacteria	608	Open in IMG/M
3300009650\|Ga0105857_1132726	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella → Ideonella sakaiensis	688	Open in IMG/M
3300009709\|Ga0116227_10825372	Not Available	699	Open in IMG/M
3300010046\|Ga0126384_12469018	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	504	Open in IMG/M
3300010371\|Ga0134125_11154739	All Organisms → cellular organisms → Bacteria → Proteobacteria	847	Open in IMG/M
3300010399\|Ga0134127_11915407	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	670	Open in IMG/M
3300010880\|Ga0126350_10248494	Not Available	1281	Open in IMG/M
3300012205\|Ga0137362_10320116	Not Available	1343	Open in IMG/M
3300012476\|Ga0157344_1034249	Not Available	501	Open in IMG/M
3300012685\|Ga0137397_10406422	All Organisms → cellular organisms → Bacteria → Proteobacteria	1014	Open in IMG/M
3300012927\|Ga0137416_11445844	Not Available	623	Open in IMG/M
3300013832\|Ga0120132_1049138	Not Available	813	Open in IMG/M
3300014201\|Ga0181537_10176498	Not Available	1468	Open in IMG/M
3300014259\|Ga0075311_1172624	Not Available	507	Open in IMG/M
3300014495\|Ga0182015_10753370	Not Available	613	Open in IMG/M
3300014884\|Ga0180104_1221171	Not Available	565	Open in IMG/M
3300015242\|Ga0137412_10085625	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	2564	Open in IMG/M
3300017972\|Ga0187781_11434131	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	511	Open in IMG/M
3300018034\|Ga0187863_10070961	All Organisms → cellular organisms → Bacteria → Proteobacteria	1967	Open in IMG/M
3300018062\|Ga0187784_10793836	All Organisms → cellular organisms → Bacteria → Proteobacteria	756	Open in IMG/M
3300018062\|Ga0187784_10942410	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella → Ideonella sakaiensis	687	Open in IMG/M
3300018062\|Ga0187784_11244314	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	590	Open in IMG/M
3300018079\|Ga0184627_10085226	All Organisms → cellular organisms → Bacteria → Proteobacteria	1660	Open in IMG/M
3300019284\|Ga0187797_1085748	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	618	Open in IMG/M
3300019377\|Ga0190264_11224193	Not Available	626	Open in IMG/M
3300019487\|Ga0187893_10556878	All Organisms → cellular organisms → Bacteria → Proteobacteria	735	Open in IMG/M
3300020021\|Ga0193726_1331307	Not Available	571	Open in IMG/M
3300021086\|Ga0179596_10027465	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	2152	Open in IMG/M
3300021178\|Ga0210408_10084573	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	2490	Open in IMG/M
3300021403\|Ga0210397_11322641	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	560	Open in IMG/M
3300021404\|Ga0210389_11028165	All Organisms → cellular organisms → Bacteria → Proteobacteria	638	Open in IMG/M
3300022506\|Ga0242648_1062790	Not Available	588	Open in IMG/M
3300023264\|Ga0247772_1049588	All Organisms → cellular organisms → Bacteria → Proteobacteria	877	Open in IMG/M
3300025505\|Ga0207929_1075268	Not Available	637	Open in IMG/M
3300025904\|Ga0207647_10176540	All Organisms → cellular organisms → Bacteria → Proteobacteria	1243	Open in IMG/M
3300025944\|Ga0207661_11880545	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Hydrocarboniphaga → Hydrocarboniphaga effusa → Hydrocarboniphaga effusa AP103	544	Open in IMG/M
3300025972\|Ga0207668_11342473	Not Available	644	Open in IMG/M
3300026075\|Ga0207708_10043667	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	3415	Open in IMG/M
3300026328\|Ga0209802_1259665	Not Available	589	Open in IMG/M
3300026557\|Ga0179587_10436602	All Organisms → cellular organisms → Bacteria → Proteobacteria	856	Open in IMG/M
3300027526\|Ga0209968_1014472	All Organisms → cellular organisms → Bacteria → Proteobacteria	1242	Open in IMG/M
3300027590\|Ga0209116_1049115	Not Available	910	Open in IMG/M
3300027610\|Ga0209528_1090869	All Organisms → cellular organisms → Bacteria → Proteobacteria	675	Open in IMG/M
3300027633\|Ga0208988_1117868	Not Available	652	Open in IMG/M
3300027648\|Ga0209420_1016141	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2496	Open in IMG/M
3300027678\|Ga0209011_1189075	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	565	Open in IMG/M
3300027895\|Ga0209624_10740709	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	647	Open in IMG/M
3300027903\|Ga0209488_11025365	Not Available	569	Open in IMG/M
3300028047\|Ga0209526_10066619	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2533	Open in IMG/M
3300028047\|Ga0209526_10575297	All Organisms → cellular organisms → Bacteria → Proteobacteria	725	Open in IMG/M
3300028742\|Ga0302220_10290617	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae → unclassified Halieaceae → marine gamma proteobacterium HTCC2080	596	Open in IMG/M
3300028748\|Ga0302156_10177953	All Organisms → cellular organisms → Bacteria → Proteobacteria	1014	Open in IMG/M
3300028765\|Ga0302198_10108019	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1505	Open in IMG/M
3300028780\|Ga0302225_10273752	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella → Ideonella sakaiensis	803	Open in IMG/M
3300028803\|Ga0307281_10085556	Not Available	1043	Open in IMG/M
3300029922\|Ga0311363_11150966	All Organisms → cellular organisms → Bacteria → Proteobacteria	660	Open in IMG/M
3300029939\|Ga0311328_10680611	Not Available	699	Open in IMG/M
3300029951\|Ga0311371_10194592	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	3019	Open in IMG/M
3300029951\|Ga0311371_12358985	All Organisms → cellular organisms → Bacteria → Proteobacteria	548	Open in IMG/M
3300029984\|Ga0311332_11039143	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	658	Open in IMG/M
3300030051\|Ga0302195_10519281	Not Available	506	Open in IMG/M
3300030509\|Ga0302183_10097633	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1158	Open in IMG/M
3300030580\|Ga0311355_10792005	All Organisms → cellular organisms → Bacteria → Proteobacteria	871	Open in IMG/M
3300030737\|Ga0302310_10730277	All Organisms → cellular organisms → Bacteria	513	Open in IMG/M
3300030946\|Ga0075379_11133604	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	634	Open in IMG/M
3300031122\|Ga0170822_15349542	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	633	Open in IMG/M
3300031446\|Ga0170820_14754456	Not Available	676	Open in IMG/M
3300031525\|Ga0302326_12703353	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	616	Open in IMG/M
3300031538\|Ga0310888_10676992	Not Available	631	Open in IMG/M
3300031546\|Ga0318538_10389904	All Organisms → cellular organisms → Bacteria → Proteobacteria	753	Open in IMG/M
3300031708\|Ga0310686_116815274	Not Available	639	Open in IMG/M
3300031723\|Ga0318493_10204124	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1044	Open in IMG/M
3300031823\|Ga0307478_10074953	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	2568	Open in IMG/M
3300031854\|Ga0310904_10892292	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae → unclassified Halieaceae → marine gamma proteobacterium HTCC2080	627	Open in IMG/M
3300031941\|Ga0310912_10322563	All Organisms → cellular organisms → Bacteria → Proteobacteria	1197	Open in IMG/M
3300031962\|Ga0307479_12162767	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	503	Open in IMG/M
3300032044\|Ga0318558_10577252	All Organisms → cellular organisms → Bacteria → Proteobacteria	562	Open in IMG/M
3300032068\|Ga0318553_10330914	All Organisms → cellular organisms → Bacteria → Proteobacteria	797	Open in IMG/M
3300032179\|Ga0310889_10089044	All Organisms → cellular organisms → Bacteria → Proteobacteria	1292	Open in IMG/M
3300032829\|Ga0335070_10795001	All Organisms → cellular organisms → Bacteria → Proteobacteria	880	Open in IMG/M
3300033755\|Ga0371489_0499564	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella → Ideonella sakaiensis	539	Open in IMG/M
3300034199\|Ga0370514_084161	All Organisms → cellular organisms → Bacteria → Proteobacteria	808	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	90.10%
Host-Associated	Host-Associated	9.90%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	81.19%
Plants	Host-Associated → Plants	9.90%
Aquatic	Environmental → Aquatic	8.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	64.36%
Peat	Environmental → Terrestrial → Peat	14.85%
Freshwater	Environmental → Aquatic → Freshwater	6.93%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.94%
Sediment	Environmental → Aquatic → Sediment	1.98%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.98%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.99%
Cave	Environmental → Terrestrial → Cave	0.99%
Roots	Host-Associated → Plants → Roots	0.99%
Peat Moss	Host-Associated → Plants → Peat Moss	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	37.62%
Loam	Environmental → Terrestrial → Soil → Loam	16.83%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	14.85%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	9.90%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	6.93%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.94%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.98%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.99%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.99%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.99%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.99%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.99%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	17.82%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	14.85%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	13.86%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	9.90%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	7.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.94%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	3.96%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	2.97%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.97%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.98%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	1.98%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.98%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.99%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.99%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.99%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.99%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.99%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.99%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.99%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.90%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	8.91%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	7.92%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.96%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	3.96%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	3.96%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	2.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.97%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.97%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.97%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.97%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.98%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.98%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.98%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.98%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.98%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	1.98%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.99%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.99%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.99%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.99%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.99%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Agricultural Soil	0.99%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.99%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.99%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.99%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.99%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	0.99%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	0.99%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.99%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.99%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.99%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.99%
Microbial Mat On Rocks	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Microbial Mat On Rocks	0.99%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.99%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.99%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.99%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.99%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.99%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.99%
Host-Associated	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated	0.99%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.99%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001545	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005533	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300009095	Agricultural soil microbial communities from Utah to study Nitrogen management - Steer compost 2015	Environmental	Open in IMG/M
3300009627	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_10	Environmental	Open in IMG/M
3300009632	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_40	Environmental	Open in IMG/M
3300009644	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_10	Environmental	Open in IMG/M
3300009650	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-061	Environmental	Open in IMG/M
3300009709	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fb - Sphagnum magellanicum MG	Host-Associated	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010880	Boreal forest soil eukaryotic communities from Alaska, USA - C5-1 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012476	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.6.yng.070610	Host-Associated	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300013832	Permafrost microbial communities from Nunavut, Canada - A3_5cm_0M	Environmental	Open in IMG/M
3300014201	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaG	Environmental	Open in IMG/M
3300014259	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailB_D1	Environmental	Open in IMG/M
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental	Open in IMG/M
3300014884	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT730_16_1Da	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300018034	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018079	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b1	Environmental	Open in IMG/M
3300019284	Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300019487	White microbial mat communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-4 metaG	Environmental	Open in IMG/M
3300020021	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300022506	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-26-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300023264	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L151-409C-6	Environmental	Open in IMG/M
3300025505	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-1 deep-072012 (SPAdes)	Environmental	Open in IMG/M
3300025904	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026328	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027526	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 AM (SPAdes)	Host-Associated	Open in IMG/M
3300027590	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O1 (SPAdes)	Environmental	Open in IMG/M
3300027610	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027633	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M1 (SPAdes)	Environmental	Open in IMG/M
3300027648	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O1 (SPAdes)	Environmental	Open in IMG/M
3300027678	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M3 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028742	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E1_3	Environmental	Open in IMG/M
3300028748	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N3_2	Environmental	Open in IMG/M
3300028765	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N2_2	Environmental	Open in IMG/M
3300028780	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_2	Environmental	Open in IMG/M
3300028803	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_120	Environmental	Open in IMG/M
3300029922	III_Fen_E1 coassembly	Environmental	Open in IMG/M
3300029939	I_Bog_E3 coassembly	Environmental	Open in IMG/M
3300029951	III_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300029984	I_Fen_E1 coassembly	Environmental	Open in IMG/M
3300030051	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N1_2	Environmental	Open in IMG/M
3300030509	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_2	Environmental	Open in IMG/M
3300030580	II_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300030737	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N1_2	Environmental	Open in IMG/M
3300030946	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OA7 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031122	Oak Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032179	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D2	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M
3300033755	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB26FY SIP fraction	Environmental	Open in IMG/M
3300034199	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_01D_14	Environmental	Open in IMG/M

Geographical Distribution

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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.60
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.60
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F103580

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12630J15595_100304632	3300001545	Forest Soil	MKLRTRLNLVLTGLMAVFLAVLLADQIRDTRSSVREEI
Ga0062387_1000315871	3300004091	Bog Forest Soil	MQPMRLRTRLNLVVAGLSAAFLIVLIAAEVESSRASVREEIEAANR
Ga0062389_1040828691	3300004092	Bog Forest Soil	MKLRTRLNLVLTGLTAVFIVVWAVDEIRATRSSIREEIEAANRV
Ga0066673_100930033	3300005175	Soil	MKLRTRLNLVLIGLTAVSVGVLIVDELHDMRSSIREEIEAANRVAA
Ga0070682_1010592932	3300005337	Corn Rhizosphere	MKLRTRVNLIVAGLTAMFVAVLILAEIYDTRSSINEEVEAANRV
Ga0070692_101474221	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	MKLRTRLNIIVAGLTAAFVVVLIAAQLENARASVREEIHAAN
Ga0070709_108251772	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MKLRTRLNLVVTGLTAVFAAVLITSEIRDTRASVREESEA
Ga0070679_1017180682	3300005530	Corn Rhizosphere	MKLRTRLNLVVTGLTAVFMGVLIASEIRDMRSSIREEIEAANQVAS
Ga0070734_102177752	3300005533	Surface Soil	MRLRTRLNLVVAGLSAAFVAVLIAVEVQSTRASVREE
Ga0070730_110513473	3300005537	Surface Soil	MKLRTRLNLVVAGLTAAFVIVLILGEFQATKSSIREE
Ga0068854_1005854493	3300005578	Corn Rhizosphere	MKLRTRVNLIVAGLTAMFVAVLILAEIYDTRSSINEEVEAANRVGSQ
Ga0068856_1013005361	3300005614	Corn Rhizosphere	MKLRTRLNLVVAGLTVTFTAVLIGEEIRSTRLSLREEIAAGNR
Ga0068858_1018520092	3300005842	Switchgrass Rhizosphere	MKLRTRLNLIVAGLTAAFVAVLISAELLNVQASVREEVDAANRVAS
Ga0070765_1019697391	3300006176	Soil	MKLRTRLNLVVAGLTAMFIIVLTFAEIEDTRSSVNEEVEAANRVGS
Ga0097621_1008754081	3300006237	Miscanthus Rhizosphere	MKLRTRVNLIVAGLTAMFVAVLILAEIYDTRSSINEEV
Ga0075426_109288122	3300006903	Populus Rhizosphere	MKLRTRLYLVLTGVTTVFVAVLIADEVRDARSSVREEIEAANRVAA
Ga0079224_1022523001	3300009095	Agricultural Soil	MTLRMHLNLVVASLSAAFVVVLLIAEVQSARASIREEITAANR
Ga0116109_10448981	3300009627	Peatland	MKLRTRLNLVVAGLTAVFVAVLLFEEIQNTRSSVRE
Ga0116102_11966503	3300009632	Peatland	MRLRTRLNLVVAGLSATFMVVLIAAEIQSNRASVR
Ga0116121_12183811	3300009644	Peatland	MKLRTQLNLVISALSAAFVIVLIAAEVQSTQESVREEI
Ga0105857_11327261	3300009650	Permafrost Soil	MGAANIEPLMKLRTRLNLVVAGLTAAFVIVLISAEVQATRSSIREEIEAANRVA
Ga0116227_108253721	3300009709	Host-Associated	MRLRTRLNLVVAALSAAFVLVLIAAEVQSTKTSVREEIEAANRV
Ga0126384_124690181	3300010046	Tropical Forest Soil	MKLLTRLNLIVAGLTATFVIVLIFAEIANTRSSVNEEVEAANR
Ga0134125_111547391	3300010371	Terrestrial Soil	MKLRTRLNLVVTGLTAVFMGVLIASEIRDMRSSIREEIEAANQ
Ga0134127_119154073	3300010399	Terrestrial Soil	MKLRTRLNLVVAGLTATFVIVLIAGEITTARDSVREEIEAANRA
Ga0126350_102484941	3300010880	Boreal Forest Soil	MKLRSRLNLVVAALSAAFVIVLIAAEIQSARTSVREEI
Ga0137362_103201162	3300012205	Vadose Zone Soil	MRLRTRLNLVVAGLSAAFVIVLIAAEVQSTRNSVREEIEAANRV
Ga0157344_10342491	3300012476	Arabidopsis Rhizosphere	MKLRTRLNLVVAGLTATFVIVLFAGEIVTARDSVRE
Ga0137397_104064223	3300012685	Vadose Zone Soil	MKLRTRLNLIVAGLTATFIGVLIVAEIENTRSSVNEE
Ga0137416_114458441	3300012927	Vadose Zone Soil	MKLRTRLNLVVAGLTAVFVAVLLTEEIENTRSSVREE
Ga0120132_10491381	3300013832	Permafrost	LNLVVAGLSAAFVIVLIAAELESARTSVREEIEAAN
Ga0181537_101764983	3300014201	Bog	MRLRTRLSLVVAALSAAFVVVLIAAEIQATRESVR*
Ga0075311_11726242	3300014259	Natural And Restored Wetlands	MKLRTRLNLVVAGLTATFVIVLLAVEVQTARVAVREETEAANRAAAKLLGRL
Ga0182015_107533703	3300014495	Palsa	MKLRTRLNLVVAGLTAAFVIVLISAEIQATRSSIREEIE
Ga0180104_12211711	3300014884	Soil	MKLRTRLNLVVAGLTATFVIVLLSIEIQTARASVREETEAAN
Ga0137412_100856255	3300015242	Vadose Zone Soil	MGKMRLRTRLNLVVAGLSATFVIVLIAAEIQSTRASI
Ga0187781_114341311	3300017972	Tropical Peatland	MKLRTRLNLVLTAVTLVFIAVLVAREVGDTRASVREE
Ga0187863_100709613	3300018034	Peatland	MKLRTRLNLVLTGLTAVFIVVLVLDEIRATRSSIREEIEAANRVAA
Ga0187784_107938362	3300018062	Tropical Peatland	MKLRTRLNLVLTAVTAVFVAALVADEIRDTRSSIREEIEAAN
Ga0187784_109424102	3300018062	Tropical Peatland	MKLRTRLNLVVAGLTAAFVVVLIMVEIQTTRSSIREEIEAANR
Ga0187784_112443142	3300018062	Tropical Peatland	MKLQTRLNLVLTGVTVVFVAVLTAREIRNARASVREEIE
Ga0184627_100852261	3300018079	Groundwater Sediment	MKLRTRLNLVATGLTATFVIVLISAEILTARISVREEIEA
Ga0187797_10857481	3300019284	Peatland	MKLRTRLNLVLTAVTAVFVAALIADEIRDTRSSIREEIE
Ga0190264_112241932	3300019377	Soil	MKLRTRLNLVVAGLTALFVAVLLTAEVRGTRDSVREE
Ga0187893_105568781	3300019487	Microbial Mat On Rocks	MKLRTRLNLVVTGLTATFVIVLLSAEVLTVRTSVREEIEA
Ga0193726_13313071	3300020021	Soil	MQPMRLRTRLNLVVTGLSAAFLIVLIAAEIQSMRGSVREEIEA
Ga0179596_100274653	3300021086	Vadose Zone Soil	MRLRTRLNLVVAGLSATFLIVLIAAEIQSTRASIREEIEA
Ga0210408_100845735	3300021178	Soil	MKLRTRLNLVLTGVTAVFVAVLLADEIRDARSSVREEIEAANRV
Ga0210397_113226411	3300021403	Soil	MKLRTRLNLVLTGLTGVFIIVLAADELRATRSSIRE
Ga0210389_110281651	3300021404	Soil	MKLRTRLNLVVAGLTAVFVAVLLTEEIQSPRSSVREEIEAAN
Ga0242648_10627901	3300022506	Soil	MKLRTRLNLVVAGLTAVFVAVLLTEEIQNTRSSVREEI
Ga0247772_10495881	3300023264	Plant Litter	LKLRTRLNLVVAGLTALFVAVLCAAEIQSTRSSVREEIEAAN
Ga0207929_10752681	3300025505	Arctic Peat Soil	MGAANIEPLMKLRTRLNLVVAGLTAAFVIVLISAEVQATRSSIREEIEAAIG
Ga0207647_101765401	3300025904	Corn Rhizosphere	MKLRTRLNLIVAGLTAMFVAVLIFAEIENTRSSVAEEVE
Ga0207661_118805451	3300025944	Corn Rhizosphere	MKLRTRLNLVVTGLTAVFMGVLIASEIRDMRSSIREEIEAANQV
Ga0207668_113424732	3300025972	Switchgrass Rhizosphere	MKLRTRLNLVVTGLTVTFVAALILSEFQSTRISVREEIEAANRVA
Ga0207708_100436677	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MKLRTRLNIIVAGLTAAFVVVLIAAQLENARASVREEIHPANRV
Ga0209802_12596651	3300026328	Soil	MKLRTRLNLVLIGLTAVSVGVLIVDELHDMRSSIR
Ga0179587_104366021	3300026557	Vadose Zone Soil	MRLRTRLNLVVAGLSATFLIVLIAAEVQSTRASVREEIEAAN
Ga0209968_10144721	3300027526	Arabidopsis Thaliana Rhizosphere	MKLRTRLNLVVTGLTATFMIVLIAAEILTARTSVREE
Ga0209116_10491151	3300027590	Forest Soil	MQPMRLRTRLNLVVTGLSAAFLLVLIAAEIQSMRGSVREEI
Ga0209528_10908692	3300027610	Forest Soil	MKLRTRLNLVLTGLMAVFLAVLLADQIRDTRSSVRE
Ga0208988_11178681	3300027633	Forest Soil	MGEMRLRTRLNLVVAGLSATFVIVLIAAEIQSTRASIREEI
Ga0209420_10161416	3300027648	Forest Soil	MRLRTRLNLVVAGLSAAFVIVLIAAEIQSTRESVREEIEAANRVAS
Ga0209011_11890751	3300027678	Forest Soil	LNLVVAALSAAFVIVLIAAEVESTRNSVREEIEAANRVASQP
Ga0209624_107407092	3300027895	Forest Soil	MRLRTRLNLVVAGLSATFVIVLIAAEIQSTRASIREEIEAANRV
Ga0209488_110253651	3300027903	Vadose Zone Soil	MRLRTRLNLVLAALSAAFMVVLIAAEVQSTRNSVREEIEAAN
Ga0209526_100666191	3300028047	Forest Soil	MKLRTRLNLIVAGLTATFIGVLIFAEIENTRSSVNEE
Ga0209526_105752971	3300028047	Forest Soil	VVAALSAAFVIVLIAAEVESTRNSVREEIEAANRVA
Ga0302220_102906171	3300028742	Palsa	MRLRTRLNLVVAALSAAFVIVLIAAEIEATRDSVREEIEAAN
Ga0302156_101779533	3300028748	Bog	MRRMRLRTRLNLVVAGLSATFVVVLIAAEIQSTRASVREEI
Ga0302198_101080191	3300028765	Bog	MPPMRLRTRLNLVVAGLSAAFVIVLIAAEIQSARSSVREEIEAA
Ga0302225_102737521	3300028780	Palsa	MKLRTRLNLVVAGLTAAFVIVLLSAEIQATRSSIREEIEAA
Ga0307281_100855561	3300028803	Soil	MKLRTRLNLVVAGLTATFAVVLIGEEFRSTRLSLH
Ga0311363_111509662	3300029922	Fen	MPPMRLRTRLNLVVAGLSAAFVIVLIAAEIQSARS
Ga0311328_106806113	3300029939	Bog	MRLRTRLNLVVAGLSASFVVVLLAAEIQSTRASVREET
Ga0311371_101945925	3300029951	Palsa	MRLRTRLNLVVAGLSAAFVIVLIAAEIQSARSSVREEI
Ga0311371_123589852	3300029951	Palsa	MKLRTRLNLVVAGLTAAFVIVLISAEIQGTRSSIREEIE
Ga0311332_110391431	3300029984	Fen	MKLRTRPNSIVAGLTATFVMVLIFAEIEDTRSSISEEVEAANRV
Ga0302195_105192811	3300030051	Bog	MQPMRLRTRLNLVVAALSAAFVIVLIAAEVQSTRTSVREEIEAAN
Ga0302183_100976331	3300030509	Palsa	MKLRTRLNLVVAGLTAAFVIVLISAEIQATRSSIREEIEAANRVAS
Ga0311355_107920052	3300030580	Palsa	MRLRTRLNLVVAALSAAFLIVLITAEVQSSRTSVR
Ga0302310_107302771	3300030737	Palsa	MPRMRLRTRLNLVVAGLSAAFVIVLIAAEIQSARSSVREEI
Ga0075379_111336042	3300030946	Soil	MNLRTRLNLVLTGLTAVFVLALVLDEIRATRSSVREEIEAA
Ga0170822_153495421	3300031122	Forest Soil	MNLRTRLNLVLTGLTAVFVLALVLDEIRATRSSVREEIE
Ga0170820_147544562	3300031446	Forest Soil	MRLRTRLNLVVAALSAAFLIVLIATEVESSRRSVRE
Ga0302326_127033531	3300031525	Palsa	MKLRTRLNLVVAGLTAAFVIVLISAEIQASRSSIREEIEAANR
Ga0310888_106769921	3300031538	Soil	MKLRTRLNLVVIGLTATFVIVLIAAEILTARTSVREEIEAA
Ga0318538_103899041	3300031546	Soil	MKLRTRLNLVLTGVTTLFVAALVADEIRDARASVREE
Ga0310686_1168152741	3300031708	Soil	MKLRTRLNLVLTGVTAIFLAVLVADEVRDARSSVREEIEAANRV
Ga0318493_102041241	3300031723	Soil	MRLRTRLNLVVAGLTAVFVAVLIAAEIQSTRSSVREEIEAAN
Ga0307478_100749531	3300031823	Hardwood Forest Soil	MKLRTRLNLVLTGLTGVFIIVLAADELRATRSSIR
Ga0310904_108922921	3300031854	Soil	MKLRTRLNLIVAGLTAAFVAVLIAAELLNVRASVREE
Ga0310912_103225631	3300031941	Soil	MKLRTRLNLVLTGVTTLFVAALVADEIRDARASVREEIE
Ga0307479_121627671	3300031962	Hardwood Forest Soil	MKLRTRLNLVLTGVTAVFIALLVADQIRDTRSSVREE
Ga0318558_105772521	3300032044	Soil	MNLRTRLNIVVGGLAALFVAVLIAEEIKDTRSSVREEI
Ga0318553_103309141	3300032068	Soil	MKLRTRLNLVLTGVTTLFVAALVADEIRDARASVR
Ga0310889_100890441	3300032179	Soil	MKLRTRLNLVVTGLTATFMIVLIAAEILTARTSVREEIEAA
Ga0335070_107950011	3300032829	Soil	MNLRTRLNLVLTGLTAVFVLALLLDGLRATRSSVREEIEA
Ga0371489_0499564_2_121	3300033755	Peat Soil	MKLRTRLNLVVAGLTASFFIALILLEFQATRDSIREESEA
Ga0370514_084161_2_139	3300034199	Untreated Peat Soil	MKLRTQLNLVISALSAAFVVVLIAAEVQSTQQSVREEIEAANRVAS

Hidden Markov Model


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