Metagenome / Metatranscriptome Family F103556

Overview

Basic Information

• Family ID: F103556
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 101
• Average Sequence Length: 73 residues
• Representative Sequence: ISKAGVKITKVNKNDGREIQLEAGRWLQTVFNKMEVEPKWTTYNIDKVYYLQAIESEINSILSVNSNQLKLF
• Number of Associated Samples: 95
• Number of Associated Scaffolds: 101

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Unclassified
• % of genes with valid RBS motifs: 0.00 %
• % of genes near scaffold ends (potentially truncated): 2.97 %
• % of genes from short scaffolds (< 2000 bps): 2.97 %
• Associated GOLD sequencing projects: 92
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.31

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Unclassified (97.030 % of family members)
• NCBI Taxonomy ID: N/A
• Taxonomy: N/A

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater (11.881 % of family members)
• Environment Ontology (ENVO): Unclassified (51.485 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline) (57.426 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 23.00%
  β-sheet: 14.00%
  Coil/Unstructured: 63.00%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF03819	MazG	32.67
PF02562	PhoH	18.81
PF00118	Cpn60_TCP1	16.83
PF06067	DUF932	8.91
PF00856	SET	0.99
PF01503	PRA-PH	0.99

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG1702	Phosphate starvation-inducible protein PhoH, predicted ATPase	Signal transduction mechanisms [T]	18.81
COG1875	Predicted ribonuclease YlaK, contains NYN-type RNase and PhoH-family ATPase domains	General function prediction only [R]	18.81
COG0459	Chaperonin GroEL (HSP60 family)	Posttranslational modification, protein turnover, chaperones [O]	16.83

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.03 %
All Organisms	root	All Organisms	2.97 %

Level 2

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.03 %
Viruses	superkingdom	All Organisms → Viruses	1.98 %
cellular organisms	root	All Organisms → cellular organisms	0.99 %

Level 3

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.03 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.98 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.99 %

Level 4

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.03 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.98 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.99 %

Level 5

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.03 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.98 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.99 %

Level 6

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.03 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.98 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.99 %

Level 7

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.03 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.98 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.99 %

Level 8

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.03 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.98 %
unclassified Rhodospirillaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae	0.99 %

Level 9

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.03 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.98 %
Rhodospirillaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	0.99 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300000947|BBAY92_10021242	All Organisms → Viruses → Predicted Viral	1765
3300014903|Ga0164321_10520189	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	603
(restricted) 3300024255|Ga0233438_10122310	All Organisms → Viruses → Predicted Viral	1153

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.01%
Host-Associated	Host-Associated	0.99%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	96.04%
Terrestrial	Environmental → Terrestrial	2.97%
Algae	Host-Associated → Algae	0.99%

Category

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	90.10%
Freshwater	Environmental → Aquatic → Freshwater	4.95%
Soil	Environmental → Terrestrial → Soil	2.97%
Sediment	Environmental → Aquatic → Sediment	0.99%
Green Algae	Host-Associated → Algae → Green Algae	0.99%

Type

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	18.81%
Oceanic	Environmental → Aquatic → Marine → Oceanic	13.86%
Unclassified	Environmental → Aquatic → Marine → Unclassified	12.87%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	11.88%
Inlet	Environmental → Aquatic → Marine → Inlet	9.90%
Strait	Environmental → Aquatic → Marine → Strait	8.91%
Pelagic	Environmental → Aquatic → Marine → Pelagic	4.95%
Hydrothermal Vents	Environmental → Aquatic → Marine → Hydrothermal Vents	4.95%
Clay	Environmental → Terrestrial → Soil → Clay	2.97%
Lentic	Environmental → Aquatic → Freshwater → Lentic	1.98%
Sediment	Environmental → Aquatic → Marine → Sediment	1.98%
Lake	Environmental → Aquatic → Freshwater → Lake	0.99%
River	Environmental → Aquatic → Freshwater → River	0.99%
Ice	Environmental → Aquatic → Freshwater → Ice	0.99%
Oil Seeps	Environmental → Aquatic → Marine → Oil Seeps	0.99%
Volcanic	Environmental → Aquatic → Marine → Volcanic	0.99%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.99%
Ectosymbionts	Host-Associated → Algae → Green Algae → Ectosymbionts	0.99%

Subtype

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	14.85%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	12.87%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	11.88%
Unclassified	Environmental → Aquatic → Marine → Inlet → Unclassified	9.90%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	8.91%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	4.95%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	4.95%
Sediment	Environmental → Aquatic → Marine → Coastal → Sediment	3.96%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	3.96%
Sediment	Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment	3.96%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	2.97%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	1.98%
Photic Zone	Environmental → Aquatic → Marine → Oceanic → Photic Zone	1.98%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	1.98%
Unclassified	Environmental → Aquatic → Marine → Sediment → Unclassified	1.98%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	0.99%
Unclassified	Environmental → Aquatic → Freshwater → River → Unclassified	0.99%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	0.99%
Sediment	Environmental → Aquatic → Marine → Intertidal Zone → Sediment	0.99%
Diffuse Flow	Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow	0.99%
Unclassified	Environmental → Aquatic → Marine → Oil Seeps → Unclassified	0.99%
Unclassified	Environmental → Aquatic → Marine → Volcanic → Unclassified	0.99%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.99%
Unclassified	Host-Associated → Algae → Green Algae → Ectosymbionts → Unclassified	0.99%

Habitat

Habitat	Taxonomy	Distribution
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	11.88%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	8.91%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	8.91%
Seawater	Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater	7.92%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	5.94%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	4.95%
Pelagic Marine	Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine	4.95%
Marine Sediment	Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment	3.96%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	2.97%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	2.97%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	2.97%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	1.98%
Surface Seawater	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater	1.98%
Marine	Environmental → Aquatic → Marine → Inlet → Unclassified → Marine	1.98%
Marine	Environmental → Aquatic → Marine → Coastal → Sediment → Marine	1.98%
Marine Sediment	Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment	1.98%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	1.98%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	1.98%
Seawater	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater	1.98%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	1.98%
Sediment	Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment	1.98%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	0.99%
Freshwater	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater	0.99%
Freshwater	Environmental → Aquatic → Freshwater → Ice → Unclassified → Freshwater	0.99%
Deep Ocean	Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean	0.99%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	0.99%
Marine Plankton	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Plankton	0.99%
Sackhole Brine	Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine	0.99%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine	0.99%
Estuarine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine	0.99%
Diffuse Hydrothermal Flow Volcanic Vent	Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Hydrothermal Flow Volcanic Vent	0.99%
Marine	Environmental → Aquatic → Marine → Oil Seeps → Unclassified → Marine	0.99%
Deep Subsurface	Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface	0.99%
Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment	0.99%
Macroalgal Surface	Host-Associated → Algae → Green Algae → Ectosymbionts → Unclassified → Macroalgal Surface	0.99%

Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OID	Sample Name	Habitat Type
3300000792	Marine microbial communities from chronically polluted sediments in the Baltic Sea - site KBA sample SWE 02_21m	Environmental
3300000947	Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY92	Host-Associated
3300001778	Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM18, ROCA_DNA027_0.2um_3g	Environmental
3300002230	Marine microbial communities from the Baltic Sea - M1t2 FKB2 (103N)	Environmental
3300003543	Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS898_N3Area_DNA	Environmental
3300005612	Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdAd00.2	Environmental
3300006191	Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG104-DNA	Environmental
3300006789	Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG	Environmental
3300007538	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG	Environmental
3300007542	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG	Environmental
3300007716	Estuarine microbial communities from the Columbia River estuary - metaG 1546B-3	Environmental
3300007962	Estuarine microbial communities from the Columbia River estuary - metaG 1556B-02	Environmental
3300008470	Sediment core microbial communities from Adelie Basin, Antarctica. Combined Assembly of Gp0136540, Gp0136562, Gp0136563	Environmental
3300009159	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG	Environmental
3300009409	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150	Environmental
3300009428	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55	Environmental
3300009440	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110512	Environmental
3300009447	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110509	Environmental
3300009496	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120524	Environmental
3300009512	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_88	Environmental
3300009526	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_90	Environmental
3300009785	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_130	Environmental
3300010309	Estuarine microbial communities from the Columbia River estuary - metaG 1552A-3	Environmental
3300010392	Coastal sediment microbial communities from Rhode Island, USA. Combined Assembly of Gp0121717, Gp0123912, Gp0123935, Gp0139423, Gp0139424, Gp0139388, Gp0139387, Gp0139386, Gp0139385	Environmental
3300010430	Marine sediment microbial communities from Gulf of Thailand under amendment with organic carbon and nitrate - JGI co-assembly of 8 samples	Environmental
3300011010	Freshwater microbial communities from Western Basin Lake Erie, Ontario, Canada - Station 970 - Surface Ice	Environmental
3300011013	Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 4SBTROV10_white metaG	Environmental
3300012920	Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaG	Environmental
3300012928	Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St17 metaG	Environmental
3300013101	Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay4, Core 4569-4, 0-3 cm	Environmental
3300013103	Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay9, Core 4571-4, 0-3 cm	Environmental
3300014903	Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay12, Core 4567-28, 21-24 cm	Environmental
3300014913	Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay1, Core 4569-9, 0-3 cm	Environmental
3300017706	Marine viral communities from the Subarctic Pacific Ocean - Lowphox_13 viral metaG	Environmental
3300017709	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 10 SPOT_SRF_2010-04-27	Environmental
3300017752	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 23 SPOT_SRF_2011-06-22	Environmental
3300017755	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 34 SPOT_SRF_2012-07-09	Environmental
3300017758	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 32 SPOT_SRF_2012-05-30	Environmental
3300017780	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.D.N	Environmental
3300017958	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071405AT metaG (megahit assembly)	Environmental
3300019751	Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW18Oct16_MG	Environmental
3300020382	Marine microbial communities from Tara Oceans - TARA_B100000780 (ERX556058-ERR599059)	Environmental
3300021085	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015	Environmental
3300021364	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO304	Environmental
3300021957	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D	Environmental
3300021959	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13D	Environmental
3300021960	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9D	Environmental
3300022217	Sediment microbial communities from San Francisco Bay, California, United States - SF_May12_sed_USGS_24	Environmental
3300022413	Sediment microbial communities from San Francisco Bay, California, United States - SF_Jan12_sed_USGS_21	Environmental
3300022913 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_oxic_2_MG	Environmental
3300022920 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_118_April2016_10_MG	Environmental
3300023087	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101407AT metaG	Environmental
3300023210 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_4_MG	Environmental
3300023693	Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 29R (Metagenome Metatranscriptome)	Environmental
3300023699	Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 81R (Metagenome Metatranscriptome)	Environmental
3300024228	Seawater microbial communities from Monterey Bay, California, United States - 41D	Environmental
3300024231	Seawater microbial communities from Monterey Bay, California, United States - 43D	Environmental
3300024255 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_10_MG	Environmental
3300024321	Seawater microbial communities from Monterey Bay, California, United States - 31D	Environmental
3300024328	Seawater microbial communities from Monterey Bay, California, United States - 44D	Environmental
3300024329	Seawater microbial communities from Monterey Bay, California, United States - 39D	Environmental
3300024332	Seawater microbial communities from Monterey Bay, California, United States - 73D	Environmental
3300024340 (restricted)	Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_5	Environmental
3300024346	Whole water sample coassembly	Environmental
3300024415	Seawater microbial communities from Monterey Bay, California, United States - 76D	Environmental
3300024518 (restricted)	Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_2	Environmental
3300024529 (restricted)	Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_21	Environmental
3300025637	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110512 (SPAdes)	Environmental
3300025695	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_116LU_22_DNA (SPAdes)	Environmental
3300025701	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_59LU_5_DNA (SPAdes)	Environmental
3300025704	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120524 (SPAdes)	Environmental
3300027253	Estuarine microbial communities from the Columbia River estuary - metaG 1556A-02 (SPAdes)	Environmental
3300027320	Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.575 (SPAdes)	Environmental
3300027742	Oil polluted marine microbial communities from Coal Oil Point, Santa Barbara, California, USA - Sample 3 (SPAdes)	Environmental
3300027780	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_90 (SPAdes)	Environmental
3300027837 (restricted)	Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_3	Environmental
3300027868 (restricted)	Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_22	Environmental
3300027883	Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean- Svalbard ARC20M Metagenome (SPAdes)	Environmental
3300027996 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_6_MG	Environmental
3300028008	Seawater microbial communities from Monterey Bay, California, United States - 1D_r	Environmental
3300028045 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_10_MG	Environmental
3300028136	Seawater microbial communities from Monterey Bay, California, United States - 9D	Environmental
3300028194	Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_10m	Environmental
3300028287	Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI060_120m	Environmental
3300029309	Marine viral communities collected during Tara Oceans survey from station TARA_100 - TARA_R100001440	Environmental
3300031519	Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2	Environmental
3300031578	Soil microbial communities from Risofladan, Vaasa, Finland - TR-2	Environmental
3300031589	Marine microbial communities from David Island wharf, Antarctic Ocean - #35	Environmental
3300031628	Marine microbial communities from water near the shore, Antarctic Ocean - #229	Environmental
3300031659	Marine microbial communities from Ellis Fjord, Antarctic Ocean - #82	Environmental
3300031669	Soil microbial communities from Risofladan, Vaasa, Finland - TR-1	Environmental
3300031688	Marine microbial communities from water near the shore, Antarctic Ocean - #177	Environmental
3300031689	Marine microbial communities from water near the shore, Antarctic Ocean - #280	Environmental
3300031848	Marine microbial communities from water near the shore, Antarctic Ocean - #3	Environmental
3300031851	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 21515	Environmental

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
BS_KBA_SWE02_21mDRAFT_100249681	3300000792	Marine	KEGLLHETKLQKINRYYITNKGVKIIKVNKKDKREIQLEAGRWLQSIYNNMVIEPKWDQYNINKGYYLDAIEKEINSIIEVAPNQLKLF*
BBAY92_100212426	3300000947	Macroalgal Surface	NKTDGREIQLEAGRWLQTVYNKMSIEPKWENYDINKTYYLEAIEKEIDSITNVNSSQLTLF*
ACM18_10474751	3300001778	Marine Plankton	IKIIKVNKSDARQIQLEAGQWMQTIFNKMKIEPKWENYNVNKAYYLDAIEQEIDNIMNVSSNQLTLF*
M1t2FKB2103N_10366668	3300002230	Marine	IQLEAGRWVQTVFNKMKVAPKWSDYNIDKLYYMQAIETEINNILTINTNQLKLF*
FS898DNA_105509261	3300003543	Diffuse Hydrothermal Flow Volcanic Vent	NEEELQKINRYFISKDGVKIIKVNKSDAREIQLEAGRWLQTVYNEMVVEPKWETYNINKGYYMQAIESEINSILSVSTNQLKLF*
Ga0070723_102831692	3300005612	Marine Sediment	EETKLQKINRYYISNNGVKIVKVNKKDNREIQLEAGRWVQTLFNDMQVKPKWESYDINKTYYLQAIETEINNILTVSSSQLKLF*
Ga0075447_101630211	3300006191	Marine	NREIQLEAGKWLQTVFNKMEVQPKWETYNIDKTYYLMAIETEINNILTVNANQLKLF*
Ga0098054_10405201	3300006789	Marine	DGREIQLEAGKWLQTVFNKMECKPKWDSYNINIGYYLEAVEQEINNILNVPSKQMKLF*
Ga0099851_10446881	3300007538	Aqueous	IIKVNRVDKREIQLEAGKWIQAIFNKMKMEPKWESYNIDKGYYIQAIENEINNILTVSSNQLRLF*
Ga0099846_11906392	3300007542	Aqueous	MYKIIKVNKNDGREIQLEAGKWLQSIYNNMKVEPKWENYNIDKSYYLQAIESEIDSILTVSSNQLKLF*
Ga0102867_11543411	3300007716	Estuarine	YVKDGKYTEDKLQKINRYFISKDGVKIVKVNKNDDREIQLEAGKWLQSLFNDMQVEPKWENYNINKLYYLQAIESEINSILTVSSNQLKLF*
Ga0102907_11528743	3300007962	Estuarine	VKIVKVNKNDDREIQLEAGKWLQSLFNDMQVEPKWENYNINKLYYLQAIESEINSILTVSSNQLKLF*
Ga0115371_112281591	3300008470	Sediment	IQLESGRWLQTVYNKMEVKPKWDSYNINKGYYLQAIESEINAILSVSSNQLKLF*
Ga0114978_102109791	3300009159	Freshwater Lake	KTGVKIIKVNKVDKREIQLEAGKWIQAMFNKMKMEPKWDSYNIDKGYYTQAIENEINNILTVASNQLRLF*
Ga0114993_109909501	3300009409	Marine	SVENGAFKEEKLQKINRYFISKHGVKIVKVNKDDSREIQLEAGRWVQTVFNKMRVAPKWSDYNIDKLYYMQAIETEINNILTINTNQLKLF*
Ga0114915_100227611	3300009428	Deep Ocean	DGREIQLEAGRWLQTVFNNMAVKPKWSDYNIDKLYYLQAIESEINSILLMKTNQLKLF*
Ga0115561_11801132	3300009440	Pelagic Marine	LASIFIERKLQKINRYFISKSGVKIVKVNKNDGREIQLESGKWLQTVFNKMEVKLKWSDYNIDNLYYLQAIESEINSILSIRSNQLKLF*
Ga0115560_11166811	3300009447	Pelagic Marine	RYFISKDGVKIIKVNKNDGREIQLEAGRWVQTVFNKMKVAPKWSDYNIDKLYYMQAIEAEINSILTVNTNQLKLF*
Ga0115570_100030881	3300009496	Pelagic Marine	DGVKIIKVNKNDGREIQLEAGRWVQTVFNKMKVAPKWSDYNIDKLYYMQAIEAEINSILTVNTNQLKLF*
Ga0115003_103562981	3300009512	Marine	NRYFISKQGVKIVKVNKDDSREIQLEAGRWVQTVFNKMKVAPKWSDYNIDKLYYMQAIETEINNILTINTNQLKLF*
Ga0115004_100688583	3300009526	Marine	ISKQGVKIVKVNKDDSREIQLEAGRWVQTVFNKMEVKPKWELYNIDKVYYLQAIETEINNILTVNTNQLKLF*
Ga0115001_104455832	3300009785	Marine	HKLDKREIQLEAGKWLQVIFNDMEIKPKWEDYNIDKKYYLDSIEQEINAIINVSSNQLTLF*
Ga0102890_11057421	3300010309	Estuarine	KLQKINRYFISKDGVKIVKVNKNDDREIQLEAGKWLQSLFNDMQVEPKWENYNINKLYYLQAIESEINSILTVSSNQLKLF*
Ga0118731_1012406331	3300010392	Marine	KINRYFISKQGVKIVKVNKDDSREIQLEAGRWVQTVFNKMKLAPKWSDYNIDKIYYLQAIETEINSILTVNKNQLKLF*
Ga0118731_1067924351	3300010392	Marine	NDGREIQLEAGRWVQTVFNKMKVAPKWSDYNIDKLYYMQAIEAEINSILTVNTNQLKLF*
Ga0118733_1070859311	3300010430	Marine Sediment	EKLQKINRYFISKQGVKIVKVNKDDSREIQLEAGRWVQTVFNKMKLAPKWSDYNIDKIYYLQAIETEINSILTVNKNQLKLF*
Ga0139557_10923912	3300011010	Freshwater	YYISKTGVKIIKVNKVDKREIQLEAGKWIQAMFNKMKMEPKWDSYNIDKGYYTQAIENEINNILTVASNQLRLF*
Ga0114934_101000034	3300011013	Deep Subsurface	QKINRYYITKSGVKIIKVNKEDKREIQLEAGKWLQHIYNDMKLEPKWENYNIDNGYYLQAIEKEINNILQVSANQLQLF*
Ga0160423_102545461	3300012920	Surface Seawater	KTGVKIIKVNKNDQREIQLESGKWLQTIFNKMTVEPNWNNYNIDKAYYLSAIEQEINNILKVSTSQLELF*
Ga0163110_110885401	3300012928	Surface Seawater	ALQKINRYFISKSGVKILKVNKRDGTEIQLESGKWLQTLFNDMKVEPKWENYNIDKAYYLQAIESEIDGILSVSSSQLQLF*
Ga0164313_104939523	3300013101	Marine Sediment	SKSGVKIIKVNKNDDREIQLEAGRWLQTVFNKMNVEPKWENYKVDKLYYIKAIESEINGIITASQNQLKLF*
Ga0164318_104490741	3300013103	Marine Sediment	LNGAYNEESLQKINRYFISKEGVKIIKVNKNDGREIQLESGRWLQTVFNKMEVKPKWSDYNIDKLYYLQAIESEINSILSVKTNQLKLF*
Ga0164321_105201892	3300014903	Marine Sediment	GVKILKVNKKDGREIQLESGRWLQTIFNDMKVEPKWENYNINKLYYLQAIESEIDSILSVSSNQLKLF*
Ga0164310_107516202	3300014913	Marine Sediment	EIQLESGRWLQTVFNKMEVKPKWSDYNIDKLYYLQAIESEINSILSVKTNQLKLF*
Ga0181377_10724532	3300017706	Marine	GREIQLEAGKWLQTVFNKMECKPKWDSYNINIGYYLEAVEQEINNILNVTSKQMKLF
Ga0181387_11145732	3300017709	Seawater	ARSIKDGSFYEEKLQKINRYFISKNGVKIIKVNKNDQREIQLESGKWLQTVFNDMKVEPKWDNYNINKAYYLQAIETEINNILSVSTNQLKLF
Ga0181400_12067992	3300017752	Seawater	KWLQTVYNKMEVKPKWESYDLNKSYYLQAIEQEINNILAVSSNQLNLF
Ga0181411_10751972	3300017755	Seawater	FISKDGVKMIKVNKSDAREIQLEAGRWLQTVYNKMKVEPKWDSYNINKGYYLQAIESEINSILSVSSNQLKLF
Ga0181409_10103611	3300017758	Seawater	YFISKDGVKMIKVNKSDAREIQLEAGRWLQTVYNKMKVEPKWDSYNINKGYYLQAIESEINSILSVSSNQLKLF
Ga0181346_10200878	3300017780	Freshwater Lake	KTGVKIIKVNKVDKREIQLEAGKWIQAMFNKMKMEPKWDSYNIDKGYYTQAIENEINNILTVASNQLRLF
Ga0181346_12510961	3300017780	Freshwater Lake	REIQLEAGKWIQAIFNKMKMEPKWDSYNIDKGYYLQAIENEINGILTVSSNQLRLF
Ga0181582_104007191	3300017958	Salt Marsh	KDGRYHEEDLQKINRYYVSNTGIKIIKINKSDGRQIQLEAGQWMQTIFNKMKIEPKWENYNVNKAYYLDAIEQEIDNIMNVSSNQLTLF
Ga0194029_10262744	3300019751	Freshwater	QKINRYYISKSGVKIIKVNKKDAREIQLESGQWLQTVFNTLKVEPKWETYNINKAYYLEAIEQEIDNIMNVSSNQLTLF
Ga0211686_100816693	3300020382	Marine	YISKDGAKIVKVNKTDNREIQLEAGRWLQEVFNDIKIQPKWESYNIDKKYYLDAIEQEINGIIDVSSNQLKLF
Ga0206677_103749022	3300021085	Seawater	TKVNKNDGREIQLEAGRWLQTVFNKMEVEPKWTTYNIDKLYYLQAIESEINSILSVNSNQLKLF
Ga0213859_102536311	3300021364	Seawater	YYISNRGVKIVKIHSTDDREIQLESGRWVQTVFNELDIKPKWESYDINKSYYHEAIEQEIDNIMNVNRNQLTLF
Ga0222717_104904601	3300021957	Estuarine Water	YVKDGKYTEDKLQKINRYFISKDGVKIVKVNKNDDREIQLEAGKWLQSLFNDMQVEPKWENYNINKLYYLQAIESEINSILTVSSNQLKLF
Ga0222716_105306482	3300021959	Estuarine Water	SKLDEEELQKINRYFISKDGVKIIKVNKSDAREIQLEAGRWLQTVYNEMIVEPKWETYNINKVYYMQAIESEINSILAVSSNQLKLF
Ga0222715_103942811	3300021960	Estuarine Water	DSELISDDLQKINRYYISKSGVKITKVNKTDGREIQLEAGRWLQTVYNKMSIEPKWENYNINKAYYLEAIEKEIDSITNVNSNQLELF
Ga0224514_101611591	3300022217	Sediment	DGREIQLEAGRWLQTVFNKMEVKPKWSDYNIDKLYYLQAIESEINSILSVKTNQLKLF
Ga0224508_106085732	3300022413	Sediment	SFIEKKLQKINRYFISKSGVKIVKVNKNDGREIQLESGKWLQTVFNKMEVKLKWSDYNIDNLYYLQAIESEINSILSIKSNQLKLF
(restricted) Ga0233404_101414462	3300022913	Seawater	NGAFKEEKLQKINRYFISKQGVKIVKVNKDDSREIQLEAGRWVQTVFNKMKVAPKWSDYNIDKLYYMQAIETEINNILTINTNQLKLF
(restricted) Ga0233426_104004913	3300022920	Seawater	DLQKINRYFISKDGVKIIKVNKKDAREIQLEAGRWLQTVYNKMEVEPKWESYNINKGYYLQAIESEINAILSVSSNQLKLF
Ga0255774_105233851	3300023087	Salt Marsh	LQKINRYYISNSGIKIIKVNKSDGREIQLESGQWLQTVFNKMKIEPKWENYNINRAYYLEAIEQEIDNITNVSSNQLTLF
(restricted) Ga0233412_104742821	3300023210	Seawater	IKVNKTDKREIQLEAGRWLQSIFNNMQIKPQWKDYDIQKKYYLDAIEQEINGIINVASNQLTLF
Ga0232112_10303701	3300023693	Seawater	KKLQKINRYFISKSGVKIVKVNKNDGREIQLESGKWLQTVFNKMEVKLKWSDYNIDNLYYLQAIESEINSILSIKSNQLKLF
Ga0228695_10695462	3300023699	Seawater	VKVNKNDGREIQLESGKWLQTVFNKMEVKLKWSDYNIDNLYYLQAIESEINSILSIKSNQLKLF
Ga0228633_10441371	3300024228	Seawater	INRYFISKDGVKIIKVNKNDGREIQLEAGRWLQTVFNKMEVKPKWSDYNIDKLYYLQAIESEINSILSIKSNQLKLF
Ga0233399_10873143	3300024231	Seawater	GREIQLEAGRWLQTVFNKMEVKPKCSDYNIDKLYYLQAIESEINSILSVKTNQLKLF
(restricted) Ga0233438_101223104	3300024255	Seawater	YIYDGVKIIKVNKKDAREIQLESGRWMQSIFNKMHIKPKWEEYNINKRYYLDAIEQEINSIITVSNQLTLF
Ga0228626_10418623	3300024321	Seawater	INRYFISKSGVKILKVNKKDKREIQLEAGKWLQSIFNDMQLEPKWENYDIDKKYYLEAIEQEINNIIDVAPNQLTLF
Ga0228635_11426672	3300024328	Seawater	AFTEDSLQKINRYFISKDGVKIIKVNKNDGREIQLEAGRWLQTVFNKMEVKPKWSDYNIDKLYYLQAIESEINSILSVKTNQLKLF
Ga0228631_10861741	3300024329	Seawater	IKVNKNDGREIQLEAGRWLQTVFNKMEVKPKWSDYNINKLYYLQAIESEINSILSVKTNQLKLF
Ga0228659_11385332	3300024332	Seawater	KNDGREIQLEAGRWLQTVFNKMEVKPKWSDYNIDKLYYLQAIESEINSILSVKTNQLKLF
(restricted) Ga0255042_100207791	3300024340	Seawater	YFISKDGVKIIKVNKNDGREIQLEAGRWVQTVFNKMKVAPKLSDYNIDKLYYMQAIEAEINSILTVNTNQLKLF
Ga0244775_111843041	3300024346	Estuarine	VKIIKVNKKDGREIQLEAGKWLQTVYNDMKVEPKWENYNIDKAYYLQAIESEINSILTVPSNQLKLF
Ga0228662_11458001	3300024415	Seawater	KDKREIQLEAGKWLQSIFNDMQLEPKWENYDIDKKYYLEAIEQEINNIIDVAPNQLTLF
(restricted) Ga0255048_104230861	3300024518	Seawater	KITKVNKNDGREIQLEAGRWLQTVFNKMEVEPKWTTYNIDKVYYLQAIESEINSILSVNSNQLKLF
(restricted) Ga0255044_100738243	3300024529	Seawater	YKEKNLQKINRYFISRPGKDSVKIIKVNKKDGREIQCESGMWMQTVFNELDIKPKWEDYNLNLNYYLKAIESEIDKILSVSANQLKLF
(restricted) Ga0255044_103057853	3300024529	Seawater	GLLNEIDLQKINRYFISKDGVKIIKVNKKDAREIQLEAGRWLQTVYNKMEVEPKWESYNINKGYYLQAIESEINAILSVSSNQLKLF
Ga0209197_11637592	3300025637	Pelagic Marine	SRSVENKSFIERKLQKINRYFISKSGVKIVKVNKNDGREIQLESGKWLQTVFNKMEVKLKWSDYNIDNLYYLQAIESEINSILSIRSNQLKLF
Ga0209653_11975242	3300025695	Marine	TKVHKIDGREIQLEAGKWLQTVFNKMECKPKWDSYNINISYYLEAVEQEINNILNVPSKQMKLF
Ga0209771_12236391	3300025701	Marine	KTDGREIQLEAGKWLQTVFNKMECKPKWDSYNINIGYYLEAVEQEINNILNVPSKQMKLF
Ga0209602_10882352	3300025704	Pelagic Marine	NDGREIQLEAGRWVQTVFNKMKVAPKWSDYNIDKLYYMQAIEAEINSILTVNTNQLKLF
Ga0208680_10733712	3300027253	Estuarine	KDGVKIVKVNKNDDREIQLEAGKWLQSLFNDMQVEPKWENYNINKLYYLQAIESEINSILTVSSNQLKLF
Ga0208923_10176934	3300027320	Estuarine	EIQLEAGKWIQAIFNKMKMEPKWESYNIDKGYYTQAIENEINNILTVSSNQLRLF
Ga0209121_101636732	3300027742	Marine	KKDKREIQLEAGKWLQSIFNDMQLEPKWENYDIDKKYYLEAIEQEINNIIDVAPNQLTLF
Ga0209502_101807281	3300027780	Marine	KVHKLDKREIQLEAGRWLQVVFNDMKIKPKWEDYKIDKKYYLDAVEEEINGIINVSSNQLKLF
(restricted) Ga0255041_100315694	3300027837	Seawater	DKLQKINRYFISKDGVKIVKVNKNDDREIQLEAGKWLQSLFNNMQVEPKWENYNINKLYYLQAIESEINSILTVSSNQLKLF
(restricted) Ga0255041_102733843	3300027837	Seawater	IIKVNKKDAREIQLEAGRWLQTVYNKMEVEPKWESYNINKGYYLQAIESEINAILSVSSNQLKLF
(restricted) Ga0255053_103876503	3300027868	Seawater	KIIKLNKNDGREIQLEAGKWLQTVYNDMKVEPKWENYDINKVYYLEAIEKEINNILTVSSNQLKLF
Ga0209713_110118021	3300027883	Marine	LQKINRYFISSIGKKIVKVNKTDGREIQLESGQWLQTVFNKMTVEPKWENYKINKSYYMQAIESEINSIITVNNNQLKLF
(restricted) Ga0233413_102905222	3300027996	Seawater	KGMKIIKINKSDHREIQLEAGPWMQVLFNKLEIKPKWKEYDININYYLKAIESEIDKILSVSANQLKLF
Ga0228674_10331421	3300028008	Seawater	YFISKSGVKILKVNKKDKREIQLEAGKWLQSIFNDMQLEPKWENYDIDKKYYLEAIEQEINNIIDVAPNQLTLF
(restricted) Ga0233414_104237522	3300028045	Seawater	ISKAGVKITKVNKNDGREIQLEAGRWLQTVFNKMEVEPKWTTYNIDKVYYLQAIESEINSILSVNSNQLKLF
Ga0228608_10742681	3300028136	Seawater	ERKLQKINRYFISKSGVKIVKVNKNDGREIQLESGKWLQTVFNKMEVKLKWSDYNIDNLYYLQAIESEINSILSIKSNQLKLF
Ga0257106_11442253	3300028194	Marine	DGREIQLESGQWLQTVFNKMTVEPKWENYNINKSYYMQAIESEINSIITINNNQLKLF
Ga0257126_11365593	3300028287	Marine	DGVKIVKVNKNDDREIQLEAGKWLQSLFNDMQVEPKWENYNINKLYYLQAIESEINSILSVSSNQLKLF
Ga0257126_12316911	3300028287	Marine	NEEDLQKINRYFISNDGVKIIKVNKKDAREIQLESGRWMQSIFNKMHIKPKWEEYNINKRYYLDAIEQEINSIITVSNQLTLF
Ga0183683_10572311	3300029309	Marine	KSIKDGKYQQVNLQKINRYYISNSGVKIVKINKKDGREIQLESGKWLQTLYNKLRVERKWDNYDVNTRYYLSAIESEIDKILSCSMNQLELF
Ga0307488_107077981	3300031519	Sackhole Brine	WYFISKAGVKIIKVNKDDQREIQLEAGRWLQVVFNDMKIKPKWEDYNIDKKYYTDAIEQEINAIINAASNQLKLF
Ga0307376_100348501	3300031578	Soil	IKNGSFNEESLQKINRYFISKDGVKIIKVNKNDGREIQLEAGRWVQTVFNKMKMAPKWSDYNIDKLYYMQAIEAEINSILKVNTNQLKLF
Ga0307376_100385671	3300031578	Soil	GSLCENELQKINRYYISNNGVKIIKINKTDKREIQLEAGRWLQNIYNNMEILPKWDNYNINKGYYLEAIEQEINGIINVTSNQLKLF
Ga0307996_11531052	3300031589	Marine	DQREIQLEAGRWLQVVFNDMQIKPKWEDYNIDKKYYLDSIEEEINSIINVSSNQLKLF
Ga0308014_10079675	3300031628	Marine	DLQKINRYYISKDGAKIVKVNKTDNREIQLEAGRWLQEVFNDIKIQPKWENYNIDKKYYLDAIEQEINGIIDVSSNQLKLF
Ga0307986_102508661	3300031659	Marine	YIDKGAFTEDNLQKINRYFISKKGVKMLKVNKTDSREIQLEAGKWLQTVFNKMEVQPKWETYNIDKTYYLMAIETEINNILTVSSNQLKLF
Ga0307375_102974754	3300031669	Soil	KIIKVNKKDKREIQLEAGRWLQSIYNNMVIEPKWDQYNINKGYYLDAIEKEINSIIEVAPNQLKLF
Ga0308011_101511802	3300031688	Marine	KQVARKIKDGKLNEEELQKINRYFISKDGVKMIKVNKSDNREIQLEAGRWLQTVYNKMKVEPKWESYNINKGYYLQAIESEINSILSVSSNQLKLF
Ga0308017_10169683	3300031689	Marine	KTDNREIQLEAGRWLQEVFNDIKIQPKWENYNIDKKYYLDAIEQEINGIIDVSSNQLKLF
Ga0308000_103596582	3300031848	Marine	KGVFGEEDLQKINRYFISKTGVKILKVNKKDNREIQLEAGKWLQTVFNKMEVQPKWETYNIDKTYYLMAIETEINNILTVNANQLKLF
Ga0315320_109256512	3300031851	Seawater	KLTKVNKNDGREIQLESGKWLQTVFNKMICEKKWKSYDINTGYYLEAIEQEITNILDVPSKQMKLF