Basic Information | |
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Family ID | F103523 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 101 |
Average Sequence Length | 53 residues |
Representative Sequence | MAVGLALIGAAVNRLDLFETLGAETFAVAAGFALVLLGVIAIAAYAVVRAIEWASRA |
Number of Associated Samples | 88 |
Number of Associated Scaffolds | 101 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 28.12 % |
% of genes near scaffold ends (potentially truncated) | 75.25 % |
% of genes from short scaffolds (< 2000 bps) | 81.19 % |
Associated GOLD sequencing projects | 83 |
AlphaFold2 3D model prediction | No |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (79.208 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (18.812 % of family members) |
Environment Ontology (ENVO) | Unclassified (39.604 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere (68.317 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Transmembrane (alpha-helical) | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 92.98% β-sheet: 0.00% Coil/Unstructured: 7.02% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Soil Terrestrial Soil Switchgrass Rhizosphere Corn, Switchgrass And Miscanthus Rhizosphere Soil Soil Agricultural Soil Permafrost Soil Hardwood Forest Soil Soil Corn, Switchgrass And Miscanthus Rhizosphere Corn Rhizosphere Host-Associated Arabidopsis Rhizosphere Corn Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Corn, Switchgrass And Miscanthus Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Switchgrass, Maize And Miscanthus Rhizosphere Populus Rhizosphere Miscanthus Rhizosphere Corn Rhizosphere Corn Rhizosphere Miscanthus Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Corn Rhizosphere Avena Fatua Rhizosphere |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
PVR_914820 | 2044078004 | Switchgrass, Maize And Miscanthus Rhizosphere | MAVGLALIGAAVNRLDLFETLGAETFALAAGFALVLLGVIAIAAYAVVRTIEWANRA |
GPICI_03179750 | 2088090015 | Soil | ITAVGLALIGAAVNRLDLFETLGDETFALAVGFALVLLGVIAIAAYAVVRAIEWASRA |
JGI1027J12803_1003347741 | 3300000955 | Soil | LAIGVAVAIMAVGLGLIGAAVNRLDLFETLGAEAFAYAAVFALVLLGVISIAAYALVRAIEWANRA* |
JGI10216J12902_1032668751 | 3300000956 | Soil | MAVGLALIGAAVNRLDLFETLGDETLAVAAGFALILLGVIAIFAYGVVRAIEWASRA* |
JGI10220J13317_100301331 | 3300001139 | Soil | FHRLGIAIAGAIIAVGLALIGAAMMRLDLLETLGAETFAIVAGFTLVFLGGIAIAAYGVVRAIEWASRG* |
JGI24743J22301_101362722 | 3300001991 | Corn, Switchgrass And Miscanthus Rhizosphere | ILAIGLALIGAAISRLDLFETLGADTLGVIAGFALVLLGVFAIATYGVIRAIEWVSRGG* |
Ga0062589_1015288091 | 3300004156 | Soil | MAVGLALIGAAVNRLDLFETLGAETFAVAAGFALVLLGVIAIAAYAVVR |
Ga0062592_1000412233 | 3300004480 | Soil | MAVGLALSGAAVNRLDLFETLGAETFVVAAGFALVLLGVIAIAAYGVVRAIEWASRA* |
Ga0058861_120077111 | 3300004800 | Host-Associated | LDLFETLGAETFAYAVGFALVLLGVMAIAAYAVVRAIEWASRA* |
Ga0065705_103303403 | 3300005294 | Switchgrass Rhizosphere | LDLFETLGAETFALAAGFALVLLGVIAIAAYAVVRAIEWANRA* |
Ga0070683_1001239863 | 3300005329 | Corn Rhizosphere | MAVGLALIGAAVNRLDLFETLGAETFAVAAGFALVLLGVIAIAAYAVVRAIEWASRA* |
Ga0070670_1016308381 | 3300005331 | Switchgrass Rhizosphere | GAAVNRLDLFETLGAEAFAYAAVFALVLLGVISIAAYALVRAIEWANRA* |
Ga0070677_107893432 | 3300005333 | Miscanthus Rhizosphere | IAVGLALVGAAINQLDLFETLGAETFAYAVGFALVLLGVMAIAAYAVVRAIEWASRA* |
Ga0068868_1000985364 | 3300005338 | Miscanthus Rhizosphere | MAVGLALIGAAVNRLDLFETLGAETFAVAAGFALVLLGVIAIAAYAVVRAI |
Ga0070660_1012172062 | 3300005339 | Corn Rhizosphere | IAVGLALIGAAMMRLDLLETLGAETFAIVAGFTLVFLGGIAIAAYGVVRAIEWASRG* |
Ga0070675_1021499712 | 3300005354 | Miscanthus Rhizosphere | AVNRLDLFETLGAEAFAYAAVFALVLLGVISIAAYALVRAIEWANRA* |
Ga0070671_1001790273 | 3300005355 | Switchgrass Rhizosphere | RLDLFETLGDETFTLAVGFALVLLGVIAIAAYAVVRAIEWASRA* |
Ga0070674_1005159881 | 3300005356 | Miscanthus Rhizosphere | IGVAGAIIAVGLALVGAAINQLDLFETLGAETFAYAVGFALVLLGVMAIAAYAVVRAIEWASRA* |
Ga0070673_10000131014 | 3300005364 | Switchgrass Rhizosphere | VAIAGAILAIGLALIGAAISRLDLFETLGADTLGVIAGFALVLLGVFAIATYGVIRAIEWVSRGG* |
Ga0070659_1000620791 | 3300005366 | Corn Rhizosphere | GAAMMRLDLLETLGAETFAIVAGFTLVFLGGIAIAAYGVVRAIEWASRG* |
Ga0070711_1019474201 | 3300005439 | Corn, Switchgrass And Miscanthus Rhizosphere | LDLLETLGAETFAIVAGFTLVFLGGIAIAAYGVVRAIEWASRG* |
Ga0070678_1012661452 | 3300005456 | Miscanthus Rhizosphere | IGAAMMRLDLLETLGAETFAIVAGFTLVFLGGIAIAAYGVVRAIEWASRG* |
Ga0070678_1019104241 | 3300005456 | Miscanthus Rhizosphere | RLAIGVAGAIMAVGLALSGAAVNRLDLFETLGAETFVVAAGFALVLLGVIAIAAYGVVRAIEWASRA* |
Ga0070699_1000605956 | 3300005518 | Corn, Switchgrass And Miscanthus Rhizosphere | MAVGLELIGAAVNRLDLFETLGAETFAVAAGFALVLLGVIAIAAYAVVRAIEWASRA* |
Ga0068853_1018735661 | 3300005539 | Corn Rhizosphere | NRLDLFETLGAEAFTYAAVFALVLLGVISIAAYALVRAIEWANRA* |
Ga0070696_1002414611 | 3300005546 | Corn, Switchgrass And Miscanthus Rhizosphere | LFETLGAEAFTYAAVFALVLLGVISIAAYALVRAIEWANRA* |
Ga0070696_1013593881 | 3300005546 | Corn, Switchgrass And Miscanthus Rhizosphere | VGLALIGAAMMRLDLLETLGAETFAIVAGFTLVFLGGIAIAAYGVVRAIEWASRG* |
Ga0070704_1013526301 | 3300005549 | Corn, Switchgrass And Miscanthus Rhizosphere | ETLGAETFAIVAGFTLVFLGGIAIAAYGVVRAIEWASRG* |
Ga0070704_1022295741 | 3300005549 | Corn, Switchgrass And Miscanthus Rhizosphere | NRLDLFETLGAEAFAYAAVFALVLLGVISIAAYALVRAIEWANRA* |
Ga0068855_1001603525 | 3300005563 | Corn Rhizosphere | LIGAAMMRLDLLETLGAETFAIVAGFTLVFLGGIAIAAYGVVRAIEWASRG* |
Ga0068851_106301133 | 3300005834 | Corn Rhizosphere | IGAAVNRLDLFETLGAETFAVAAGFALVLLGVIAIAAYAVVRAIEWASRA* |
Ga0068862_1003821673 | 3300005844 | Switchgrass Rhizosphere | VGLALIGAAVNRLDLFETLGDETFTLAVGFALVLLGVIAIAAYAVVRAIEWASRA* |
Ga0075432_100357572 | 3300006058 | Populus Rhizosphere | MAVGLALIGAAVNRLDLFETLGDDTFALAVGFALVLLGVIAIAAYAVVRAIEWASRA* |
Ga0075422_104507142 | 3300006196 | Populus Rhizosphere | ETFAVAAGFALVLLGVIAIAAYGVVRAIEWASRG* |
Ga0079221_109044372 | 3300006804 | Agricultural Soil | FETLGDDTFALAVGFALVLLGVIAIAAYAVVRAIEWASRA* |
Ga0075431_1015210871 | 3300006847 | Populus Rhizosphere | LDLFETLGDETFTLAVGFALVLLGVIAIAAYAVVRAIEWASRA* |
Ga0075433_107379043 | 3300006852 | Populus Rhizosphere | LIGAAVNRLDLFETLGAETFAVAVGFALVLLGVIALAAYAVVRAIEWASRA* |
Ga0075425_1015994301 | 3300006854 | Populus Rhizosphere | SRLAIGVAGAITAVGLALIGAAVNRLDLFETLGDETFTLAVGFALVLLGVIAIAAYAVVRAIEWASRA* |
Ga0075425_1023322552 | 3300006854 | Populus Rhizosphere | AITAVGLALIGAAVNRLDLFETLGDETFTLAVGFALVLLGIIAIAAYAVVRAIEWASRA* |
Ga0075425_1028008242 | 3300006854 | Populus Rhizosphere | AITAVGLALIGAAVNRLDLFETLGDETFTLAVGFALVLLGVIAIAAYAVVRAIEWASRA* |
Ga0075434_1003880501 | 3300006871 | Populus Rhizosphere | VAGAITAVGLALIGAAVNRLDLFETLGDETFTLAVGFALVLLGVIAIAAYAVVRAIEWASRA* |
Ga0079219_115766652 | 3300006954 | Agricultural Soil | FETLGDETFTLAVGFALVLLGVIAIAAYAVVRAIEWASGA* |
Ga0075419_104668694 | 3300006969 | Populus Rhizosphere | MAVGLALIGAAVNRLDLFETLGAETFAVAVGFALVLLGVFALAAYAVVRAIEWASRA* |
Ga0075435_1002324001 | 3300007076 | Populus Rhizosphere | LAVGLALIGAAVNRLDLFETLGAETFALAAGFALVLLGVIAIAAYGVVR |
Ga0111539_116220232 | 3300009094 | Populus Rhizosphere | MAVGLALIGAAVNRLDLFETLGAETFAVAVGFALVLLGVIALAAYAVVRAIEWASRA* |
Ga0075418_112959283 | 3300009100 | Populus Rhizosphere | ALIGAAVNRLDLFETLGDETFTLAVGFALVLLGVIAIAAYAVVRAIEWASRA* |
Ga0114129_110922222 | 3300009147 | Populus Rhizosphere | MAVGLVLIGAAVNRLDLFETLGAETFAVAAGFALVLLGVIAIAAYAVV |
Ga0114129_118832811 | 3300009147 | Populus Rhizosphere | MAVGLALIGAAVNRLDLFETLGAETFAVAAGFALVLLGVIAIAAYAVV |
Ga0114129_124048351 | 3300009147 | Populus Rhizosphere | IGAAVNRLDLFETLGAETFAVAAGFALVLLGVIAIAAYAVVRVIEWANRA* |
Ga0111538_105072891 | 3300009156 | Populus Rhizosphere | AIGLALIGAAISRLDLFETLGADTLAVVAGFALVLLGVIAIATYGVIRAIEWVSRER* |
Ga0111538_129791391 | 3300009156 | Populus Rhizosphere | MAVGLALIGAAVNRLDLFETLGDETFAVAAGFALVLLGVSAIAAYGVVRAIEWAGRA* |
Ga0075423_114685771 | 3300009162 | Populus Rhizosphere | VAGAITAVGLALIGAAVNRLDLFETLGAETFAVAVGFALVLLGVIALAAYAVVRAIEWASRA* |
Ga0075423_118454592 | 3300009162 | Populus Rhizosphere | VNRLDLFETLGDETFTLAVGFALVLLGVIAIAAYAVVRAIEWASRA* |
Ga0134128_111603183 | 3300010373 | Terrestrial Soil | FETLGDETFTLAVGFALVLLGVIAIAAYAVVRAIEWASRA* |
Ga0105239_130093212 | 3300010375 | Corn Rhizosphere | MALGLAFIGAAVTRLELFEMLSAQTFAIAAGFALLLVVVAIAAYGVVRAIEWASRG* |
Ga0134124_120451251 | 3300010397 | Terrestrial Soil | AVGLALIGAAMMRLDLLETLGAETFAIVAGFTLVFLGGIAIAAYGVVRAIEWASRG* |
Ga0134122_114120061 | 3300010400 | Terrestrial Soil | IIAVGLALIGAAMMRLDLLETLGAETFAIVAGFTLVFLGGIAIAAYGVVRAIEWASRG* |
Ga0105246_1000055122 | 3300011119 | Miscanthus Rhizosphere | MAVGLALIGAAVNRLDLFETLGAETFVVAAGFALVLLGVIAIAAYGVVRAIEWASRA* |
Ga0150984_1027227562 | 3300012469 | Avena Fatua Rhizosphere | MAVGLALVGAAVNRLNLFETLGDETFAYALGFALVLLGVIAIASYAVVRVIEWASRA* |
Ga0157304_10699592 | 3300012882 | Soil | MAVGLALIGAAVNRLDLFETLGDETFAVAAGFALVLLGVIVIAAYAVVRVIEWASRA* |
Ga0157305_100696003 | 3300012891 | Soil | MAVGLALIGAAVNRLDLFETLGDETFTLAVGFALVLLGVIAIAAYAVVRAIEWASRA* |
Ga0157285_100758161 | 3300012897 | Soil | ALIGAAISRLDLFETLGADTLGVIAGFALVLLGVFAIATYGVIRAIEWVSRGG* |
Ga0157286_100644961 | 3300012908 | Soil | VGLALSGAAVNRLDLFETLGAETFVVAAGFALVLLGVIAIAAYGVVRAIEWASRA* |
Ga0157301_100185145 | 3300012911 | Soil | IAIAGAIIAVGLALIGAAMMRLDLLETLGAETFAIVAGFTLVFLGGIAIAAYGVVRAIEWASRG* |
Ga0157310_103804862 | 3300012916 | Soil | LFETLGDETFTLAVGFALVLLGVIAIAAYAVVRAIEWASRA* |
Ga0164300_100914543 | 3300012951 | Soil | MAVGLALIGAAVNRLDLFETLGDETFTLAVGFALVLLGVIAIAAYAVVQPSNGL |
Ga0157307_10397913 | 3300013096 | Soil | VAGAITAVGLALIGAAVNRLDLFETLGAETFAVAVGFALVLLGVIAIAAYAVVRAIEWASRA* |
Ga0157371_114391752 | 3300013102 | Corn Rhizosphere | AIMAVGLALIGAAVNRLDLFETLGDETFAVAAGFALVLLGVIAIVAYGVVRAIEWASRA* |
Ga0157374_102666241 | 3300013296 | Miscanthus Rhizosphere | IGVAGAIMAVGLALSGAAVNRLDLFETLGAETFVVAAGFALVLLGVIAIAAYGVVRAIEWASRA* |
Ga0157374_103978651 | 3300013296 | Miscanthus Rhizosphere | AIMAVGLGLIGAAVNRLDLFETLGAEAFAYAAVFALVLLGVISLAAYALVRAIEWANRA* |
Ga0157378_1000056234 | 3300013297 | Miscanthus Rhizosphere | MAVGLALIAAAVNRLDLFETLGAETFAVAAGFALVLLGVIAIAAYAVV |
Ga0157372_101042425 | 3300013307 | Corn Rhizosphere | GVAAAIMAVGLGLIGAAVNRLDLFETLGAEAFAYAAVFALVLLGVISIAAYALVRAIEWANRA* |
Ga0120179_10339884 | 3300013763 | Permafrost | DTFEIVVGFTLVLLGGIAIAAYGVVRAIEWASRGRQG* |
Ga0157377_100085958 | 3300014745 | Miscanthus Rhizosphere | AIGVAGAIMAVGLALIGAAVNRLDLFETLGDETFTLAVGFALVLLGVIAIAAYAVVRAIEWASRA* |
Ga0157377_100457166 | 3300014745 | Miscanthus Rhizosphere | LLETLGAETFAIVAGFTLVFLGGIAIAAYGVVRAIEWASRG* |
Ga0132258_123760814 | 3300015371 | Arabidopsis Rhizosphere | MAVGLALVGVAVNRLDLFETLGPETFASAVGFALVLLGVFAITAYAVVRVIEWAS |
Ga0163161_106745171 | 3300017792 | Switchgrass Rhizosphere | AIMAVGLGLIGAAVNRLDLFETLGAEAFAYAAVFALVLLGVISIAAYALVRAIEWANRA |
Ga0173481_102583633 | 3300019356 | Soil | GVAGAITAVGLALIGAAVNRLDLFETLGDETFTLAVGFALVLLGVIAIAAYAVVRAIEWASRA |
Ga0173482_100270021 | 3300019361 | Soil | GAAVNRLDLFETLGAETFAYVAVFALVLLGVISIAAYALVRAIEWANRA |
Ga0173482_104333792 | 3300019361 | Soil | MAVGLALSGATVNRLDLFETLGAETFVVAAGFALVLLGVIAIAAYGVVRAIEWASRA |
Ga0224712_106701382 | 3300022467 | Corn, Switchgrass And Miscanthus Rhizosphere | FSRLAIGVAGAIIAVGLALVGAAINQLDLFETLGAETFAYAVGFALVLLGVMAIAAYAVVRAIEWASRA |
Ga0247745_10430721 | 3300022898 | Soil | MAVGLALIGAAVNRLDLFETLGDETFTLAVGFALVLLGVIAIAAYA |
Ga0247754_11711672 | 3300023102 | Soil | MAVGLALSGAAVNRLDLFETLGAETFVVAAGFALVLLGVIAIAAYGVVRAIEWASRA |
Ga0247800_11089641 | 3300023263 | Soil | ALISAAMMRLDLLETLGAETFAIVAGFTLVFLGGIAIAAYGVVRAIEWASRG |
Ga0247794_102531431 | 3300024055 | Soil | GAAVNRLDLFETLGAEAFAYAAVFALVLLGVISIAAYALVRAIEWANRA |
Ga0207682_100768062 | 3300025893 | Miscanthus Rhizosphere | AIGVAGAIIAMGLALVGAAINQLDLFETLGAETFAYAVGFALVLLGVMAIAAYAVVRAIEWASRA |
Ga0207699_110129441 | 3300025906 | Corn, Switchgrass And Miscanthus Rhizosphere | AIIAVGLALIGAAMMRLDLLETLGAETFAIVAGFTLVFLGGIAIAAYGVVRAIEWASRG |
Ga0207705_104434671 | 3300025909 | Corn Rhizosphere | MAVGLALIGAAVNRLDLFETLGAETFAVAAGFALDLLGVIAIAAYAVVRAIEWASRA |
Ga0207654_101163381 | 3300025911 | Corn Rhizosphere | LFETLGAETFAVAAGFALVLLGVIAIAAYAVVRAIEWASRA |
Ga0207695_110442993 | 3300025913 | Corn Rhizosphere | IGAAVNRLDLFETLGDETFTLAVGFALVLLGVIAIAAYAVVRAIEWASRA |
Ga0207671_100457726 | 3300025914 | Corn Rhizosphere | LFETLGAETFAVAAGFALVLLAVIAIAAYAVVRAIEWASRA |
Ga0207663_115211171 | 3300025916 | Corn, Switchgrass And Miscanthus Rhizosphere | DLFETLGDETFTLAVGFALVLLGVIAIAAYAVVRAIEWASRA |
Ga0207649_102316151 | 3300025920 | Corn Rhizosphere | AAINQLYLFETLGAETFAYAVDFALVLLGVMAIAAYAVVRAIEWASRA |
Ga0207649_116519162 | 3300025920 | Corn Rhizosphere | ETLGDETFTLAVGFALVLLGVIAIAAYAVVRAIEWASRA |
Ga0207691_116462201 | 3300025940 | Miscanthus Rhizosphere | IGVAGAITAVGLALIGAAVNRLDLFETLGDETFTLAVGFALVLLGVIAIAAYAVVRAIEWASRA |
Ga0207640_100150777 | 3300025981 | Corn Rhizosphere | MAVGLALIGAAVNRLDLFETLGAETFAVAAGFALVLLAVIAIAAYAVVRAIEWASRA |
Ga0307468_1015931372 | 3300031740 | Hardwood Forest Soil | MAVGLALSGAAVNRLDLFETLGAETFVVAAGFALVLLGVIAIAAYGVVRAFEWASRA |
Ga0310904_100133236 | 3300031854 | Soil | MAVGLALIGAAVNRLDLFETLGAETFAVAAGFALVLLGVIAIAAYAVVRAIEWASR |
Ga0310900_100953884 | 3300031908 | Soil | MAVGLALIGAAVNRLDLFETLGAETFAVAVGFALVLLGVIAIAAYAVVRAIEWASRA |
Ga0310899_101635001 | 3300032017 | Soil | TLGDETFTLAVGFALVLLGVIAIAAYAVVRAIEWASRA |
Ga0307471_1042957321 | 3300032180 | Hardwood Forest Soil | NQLDLFETLGAETFAYAVGFALVLLGVMAIAAYAVVRAIEWASRA |
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