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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F103523 |
| Family Type | Metagenome / Metatranscriptome |
| Number of Sequences | 101 |
| Average Sequence Length | 53 residues |
| Representative Sequence | MAVGLALIGAAVNRLDLFETLGAETFAVAAGFALVLLGVIAIAAYAVVRAIEWASRA |
| Number of Associated Samples | 88 |
| Number of Associated Scaffolds | 101 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | Yes |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 28.12 % |
| % of genes near scaffold ends (potentially truncated) | 75.25 % |
| % of genes from short scaffolds (< 2000 bps) | 81.19 % |
| Associated GOLD sequencing projects | 83 |
| AlphaFold2 3D model prediction | No |
| Hidden Markov Model |
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| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (79.208 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (18.812 % of family members) |
| Environment Ontology (ENVO) | Unclassified (39.604 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere (68.317 % of family members) |
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| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Transmembrane (alpha-helical) | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 92.98% β-sheet: 0.00% Coil/Unstructured: 7.02% | Feature Viewer |
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| Pfam ID | Name | % Frequency in 101 Family Scaffolds |
|---|---|---|
| PF00507 | Oxidored_q4 | 5.94 |
| PF00329 | Complex1_30kDa | 2.97 |
| PF01904 | DUF72 | 2.97 |
| PF00239 | Resolvase | 2.97 |
| PF00072 | Response_reg | 0.99 |
| PF03796 | DnaB_C | 0.99 |
| PF13087 | AAA_12 | 0.99 |
| PF02656 | DUF202 | 0.99 |
| PF02245 | Pur_DNA_glyco | 0.99 |
| PF13432 | TPR_16 | 0.99 |
| PF00346 | Complex1_49kDa | 0.99 |
| PF01058 | Oxidored_q6 | 0.99 |
| PF00589 | Phage_integrase | 0.99 |
| PF05694 | SBP56 | 0.99 |
| PF01921 | tRNA-synt_1f | 0.99 |
| COG ID | Name | Functional Category | % Frequency in 101 Family Scaffolds |
|---|---|---|---|
| COG0838 | NADH:ubiquinone oxidoreductase subunit 3 (chain A) | Energy production and conversion [C] | 5.94 |
| COG1801 | Sugar isomerase-related protein YecE, UPF0759/DUF72 family | General function prediction only [R] | 2.97 |
| COG3262 | Ni,Fe-hydrogenase III component G | Energy production and conversion [C] | 2.97 |
| COG2452 | Predicted site-specific integrase-resolvase | Mobilome: prophages, transposons [X] | 2.97 |
| COG1961 | Site-specific DNA recombinase SpoIVCA/DNA invertase PinE | Replication, recombination and repair [L] | 2.97 |
| COG0852 | NADH:ubiquinone oxidoreductase 27 kD subunit (chain C) | Energy production and conversion [C] | 2.97 |
| COG1066 | DNA repair protein RadA/Sms, contains AAA+ ATPase domain | Replication, recombination and repair [L] | 0.99 |
| COG1384 | Lysyl-tRNA synthetase, class I | Translation, ribosomal structure and biogenesis [J] | 0.99 |
| COG1740 | Ni,Fe-hydrogenase I small subunit | Energy production and conversion [C] | 0.99 |
| COG0305 | Replicative DNA helicase | Replication, recombination and repair [L] | 0.99 |
| COG1941 | Coenzyme F420-reducing hydrogenase, gamma subunit | Energy production and conversion [C] | 0.99 |
| COG2094 | 3-methyladenine DNA glycosylase Mpg | Replication, recombination and repair [L] | 0.99 |
| COG2149 | Uncharacterized membrane protein YidH, DUF202 family | Function unknown [S] | 0.99 |
| COG0649 | NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) | Energy production and conversion [C] | 0.99 |
| COG3260 | Ni,Fe-hydrogenase III small subunit | Energy production and conversion [C] | 0.99 |
| COG3261 | Ni,Fe-hydrogenase III large subunit | Energy production and conversion [C] | 0.99 |
| COG0377 | NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase | Energy production and conversion [C] | 0.99 |
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| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 79.21 % |
| All Organisms | root | All Organisms | 20.79 % |
| Visualization |
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| Habitat | Taxonomy | Distribution |
| Populus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere | 18.81% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 10.89% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 7.92% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere | 4.95% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere | 4.95% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere | 4.95% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil | 3.96% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil | 3.96% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere | 3.96% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere | 3.96% |
| Terrestrial Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil | 2.97% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil | 2.97% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere | 2.97% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil | 1.98% |
| Agricultural Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil | 1.98% |
| Hardwood Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil | 1.98% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere | 1.98% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere | 1.98% |
| Switchgrass Rhizosphere | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere | 0.99% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere | 0.99% |
| Permafrost | Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost | 0.99% |
| Corn Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere | 0.99% |
| Host-Associated | Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated | 0.99% |
| Arabidopsis Rhizosphere | Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere | 0.99% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere | 0.99% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere | 0.99% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere | 0.99% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere | 0.99% |
| Switchgrass, Maize And Miscanthus Rhizosphere | Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Switchgrass, Maize And Miscanthus Rhizosphere | 0.99% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere | 0.99% |
| Avena Fatua Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere | 0.99% |
| Visualization |
|---|
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| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 2044078004 | Switchgrass soil microbial communities from University of Illinois Energy Farm, Urbana, IL | Host-Associated | Open in IMG/M |
| 2088090015 | Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil | Environmental | Open in IMG/M |
| 3300000955 | Soil microbial communities from Great Prairies - Iowa, Native Prairie soil | Environmental | Open in IMG/M |
| 3300000956 | Soil microbial communities from Great Prairies - Kansas, Native Prairie soil | Environmental | Open in IMG/M |
| 3300001139 | Soil microbial communities from Great Prairies - Wisconsin, Switchgrass soil | Environmental | Open in IMG/M |
| 3300001991 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2 | Host-Associated | Open in IMG/M |
| 3300004156 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1 | Environmental | Open in IMG/M |
| 3300004480 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4 | Environmental | Open in IMG/M |
| 3300004800 | Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-1 (Metagenome Metatranscriptome) | Host-Associated | Open in IMG/M |
| 3300005294 | Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil | Environmental | Open in IMG/M |
| 3300005329 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG | Environmental | Open in IMG/M |
| 3300005331 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG | Host-Associated | Open in IMG/M |
| 3300005333 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG | Host-Associated | Open in IMG/M |
| 3300005338 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 | Host-Associated | Open in IMG/M |
| 3300005339 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG | Host-Associated | Open in IMG/M |
| 3300005354 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG | Host-Associated | Open in IMG/M |
| 3300005355 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG | Host-Associated | Open in IMG/M |
| 3300005356 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG | Host-Associated | Open in IMG/M |
| 3300005364 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG | Host-Associated | Open in IMG/M |
| 3300005366 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG | Host-Associated | Open in IMG/M |
| 3300005439 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG | Environmental | Open in IMG/M |
| 3300005456 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG | Host-Associated | Open in IMG/M |
| 3300005518 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG | Environmental | Open in IMG/M |
| 3300005539 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 | Host-Associated | Open in IMG/M |
| 3300005546 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG | Environmental | Open in IMG/M |
| 3300005549 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG | Environmental | Open in IMG/M |
| 3300005563 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 | Host-Associated | Open in IMG/M |
| 3300005834 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 | Host-Associated | Open in IMG/M |
| 3300005844 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 | Host-Associated | Open in IMG/M |
| 3300006058 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 | Host-Associated | Open in IMG/M |
| 3300006196 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 | Host-Associated | Open in IMG/M |
| 3300006804 | Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 | Environmental | Open in IMG/M |
| 3300006847 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 | Host-Associated | Open in IMG/M |
| 3300006852 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 | Host-Associated | Open in IMG/M |
| 3300006854 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4 | Host-Associated | Open in IMG/M |
| 3300006871 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 | Host-Associated | Open in IMG/M |
| 3300006954 | Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control | Environmental | Open in IMG/M |
| 3300006969 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 | Host-Associated | Open in IMG/M |
| 3300007076 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 | Host-Associated | Open in IMG/M |
| 3300009094 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) | Host-Associated | Open in IMG/M |
| 3300009100 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2 | Host-Associated | Open in IMG/M |
| 3300009147 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) | Host-Associated | Open in IMG/M |
| 3300009156 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2) | Host-Associated | Open in IMG/M |
| 3300009162 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2 | Host-Associated | Open in IMG/M |
| 3300010373 | Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4 | Environmental | Open in IMG/M |
| 3300010375 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG | Host-Associated | Open in IMG/M |
| 3300010397 | Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4 | Environmental | Open in IMG/M |
| 3300010400 | Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2 | Environmental | Open in IMG/M |
| 3300011119 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG | Host-Associated | Open in IMG/M |
| 3300012469 | Combined assembly of Soil carbon rhizosphere | Host-Associated | Open in IMG/M |
| 3300012882 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 | Environmental | Open in IMG/M |
| 3300012891 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S148-409B-2 | Environmental | Open in IMG/M |
| 3300012897 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S074-202C-1 | Environmental | Open in IMG/M |
| 3300012908 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S089-202R-1 | Environmental | Open in IMG/M |
| 3300012911 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S088-202R-2 | Environmental | Open in IMG/M |
| 3300012916 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S213-509R-2 | Environmental | Open in IMG/M |
| 3300012951 | Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG | Environmental | Open in IMG/M |
| 3300013096 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 | Environmental | Open in IMG/M |
| 3300013102 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG | Host-Associated | Open in IMG/M |
| 3300013296 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG | Host-Associated | Open in IMG/M |
| 3300013297 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG | Host-Associated | Open in IMG/M |
| 3300013307 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG | Host-Associated | Open in IMG/M |
| 3300013763 | Permafrost microbial communities from Nunavut, Canada - A15_65cm_0M | Environmental | Open in IMG/M |
| 3300014745 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG | Host-Associated | Open in IMG/M |
| 3300015371 | Combined assembly of cpr5 and col0 rhizosphere and soil | Host-Associated | Open in IMG/M |
| 3300017792 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG | Host-Associated | Open in IMG/M |
| 3300019356 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2) | Environmental | Open in IMG/M |
| 3300019361 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2) | Environmental | Open in IMG/M |
| 3300022467 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) | Environmental | Open in IMG/M |
| 3300022898 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S109-311C-5 | Environmental | Open in IMG/M |
| 3300023102 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S184-509B-5 | Environmental | Open in IMG/M |
| 3300023263 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S092-311B-6 | Environmental | Open in IMG/M |
| 3300024055 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S046-202B-6 | Environmental | Open in IMG/M |
| 3300025893 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025906 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025909 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025911 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025913 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025914 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025916 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025920 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025940 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025981 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300031740 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05 | Environmental | Open in IMG/M |
| 3300031854 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1 | Environmental | Open in IMG/M |
| 3300031908 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1 | Environmental | Open in IMG/M |
| 3300032017 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D4 | Environmental | Open in IMG/M |
| 3300032180 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515 | Environmental | Open in IMG/M |
| Geographical Distribution | |
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| Zoom: | Powered by OpenStreetMap |
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| Protein ID | Sample Taxon ID | Habitat | Sequence |
| PVR_914820 | 2044078004 | Switchgrass, Maize And Miscanthus Rhizosphere | MAVGLALIGAAVNRLDLFETLGAETFALAAGFALVLLGVIAIAAYAVVRTIEWANRA |
| GPICI_03179750 | 2088090015 | Soil | ITAVGLALIGAAVNRLDLFETLGDETFALAVGFALVLLGVIAIAAYAVVRAIEWASRA |
| JGI1027J12803_1003347741 | 3300000955 | Soil | LAIGVAVAIMAVGLGLIGAAVNRLDLFETLGAEAFAYAAVFALVLLGVISIAAYALVRAIEWANRA* |
| JGI10216J12902_1032668751 | 3300000956 | Soil | MAVGLALIGAAVNRLDLFETLGDETLAVAAGFALILLGVIAIFAYGVVRAIEWASRA* |
| JGI10220J13317_100301331 | 3300001139 | Soil | FHRLGIAIAGAIIAVGLALIGAAMMRLDLLETLGAETFAIVAGFTLVFLGGIAIAAYGVVRAIEWASRG* |
| JGI24743J22301_101362722 | 3300001991 | Corn, Switchgrass And Miscanthus Rhizosphere | ILAIGLALIGAAISRLDLFETLGADTLGVIAGFALVLLGVFAIATYGVIRAIEWVSRGG* |
| Ga0062589_1015288091 | 3300004156 | Soil | MAVGLALIGAAVNRLDLFETLGAETFAVAAGFALVLLGVIAIAAYAVVR |
| Ga0062592_1000412233 | 3300004480 | Soil | MAVGLALSGAAVNRLDLFETLGAETFVVAAGFALVLLGVIAIAAYGVVRAIEWASRA* |
| Ga0058861_120077111 | 3300004800 | Host-Associated | LDLFETLGAETFAYAVGFALVLLGVMAIAAYAVVRAIEWASRA* |
| Ga0065705_103303403 | 3300005294 | Switchgrass Rhizosphere | LDLFETLGAETFALAAGFALVLLGVIAIAAYAVVRAIEWANRA* |
| Ga0070683_1001239863 | 3300005329 | Corn Rhizosphere | MAVGLALIGAAVNRLDLFETLGAETFAVAAGFALVLLGVIAIAAYAVVRAIEWASRA* |
| Ga0070670_1016308381 | 3300005331 | Switchgrass Rhizosphere | GAAVNRLDLFETLGAEAFAYAAVFALVLLGVISIAAYALVRAIEWANRA* |
| Ga0070677_107893432 | 3300005333 | Miscanthus Rhizosphere | IAVGLALVGAAINQLDLFETLGAETFAYAVGFALVLLGVMAIAAYAVVRAIEWASRA* |
| Ga0068868_1000985364 | 3300005338 | Miscanthus Rhizosphere | MAVGLALIGAAVNRLDLFETLGAETFAVAAGFALVLLGVIAIAAYAVVRAI |
| Ga0070660_1012172062 | 3300005339 | Corn Rhizosphere | IAVGLALIGAAMMRLDLLETLGAETFAIVAGFTLVFLGGIAIAAYGVVRAIEWASRG* |
| Ga0070675_1021499712 | 3300005354 | Miscanthus Rhizosphere | AVNRLDLFETLGAEAFAYAAVFALVLLGVISIAAYALVRAIEWANRA* |
| Ga0070671_1001790273 | 3300005355 | Switchgrass Rhizosphere | RLDLFETLGDETFTLAVGFALVLLGVIAIAAYAVVRAIEWASRA* |
| Ga0070674_1005159881 | 3300005356 | Miscanthus Rhizosphere | IGVAGAIIAVGLALVGAAINQLDLFETLGAETFAYAVGFALVLLGVMAIAAYAVVRAIEWASRA* |
| Ga0070673_10000131014 | 3300005364 | Switchgrass Rhizosphere | VAIAGAILAIGLALIGAAISRLDLFETLGADTLGVIAGFALVLLGVFAIATYGVIRAIEWVSRGG* |
| Ga0070659_1000620791 | 3300005366 | Corn Rhizosphere | GAAMMRLDLLETLGAETFAIVAGFTLVFLGGIAIAAYGVVRAIEWASRG* |
| Ga0070711_1019474201 | 3300005439 | Corn, Switchgrass And Miscanthus Rhizosphere | LDLLETLGAETFAIVAGFTLVFLGGIAIAAYGVVRAIEWASRG* |
| Ga0070678_1012661452 | 3300005456 | Miscanthus Rhizosphere | IGAAMMRLDLLETLGAETFAIVAGFTLVFLGGIAIAAYGVVRAIEWASRG* |
| Ga0070678_1019104241 | 3300005456 | Miscanthus Rhizosphere | RLAIGVAGAIMAVGLALSGAAVNRLDLFETLGAETFVVAAGFALVLLGVIAIAAYGVVRAIEWASRA* |
| Ga0070699_1000605956 | 3300005518 | Corn, Switchgrass And Miscanthus Rhizosphere | MAVGLELIGAAVNRLDLFETLGAETFAVAAGFALVLLGVIAIAAYAVVRAIEWASRA* |
| Ga0068853_1018735661 | 3300005539 | Corn Rhizosphere | NRLDLFETLGAEAFTYAAVFALVLLGVISIAAYALVRAIEWANRA* |
| Ga0070696_1002414611 | 3300005546 | Corn, Switchgrass And Miscanthus Rhizosphere | LFETLGAEAFTYAAVFALVLLGVISIAAYALVRAIEWANRA* |
| Ga0070696_1013593881 | 3300005546 | Corn, Switchgrass And Miscanthus Rhizosphere | VGLALIGAAMMRLDLLETLGAETFAIVAGFTLVFLGGIAIAAYGVVRAIEWASRG* |
| Ga0070704_1013526301 | 3300005549 | Corn, Switchgrass And Miscanthus Rhizosphere | ETLGAETFAIVAGFTLVFLGGIAIAAYGVVRAIEWASRG* |
| Ga0070704_1022295741 | 3300005549 | Corn, Switchgrass And Miscanthus Rhizosphere | NRLDLFETLGAEAFAYAAVFALVLLGVISIAAYALVRAIEWANRA* |
| Ga0068855_1001603525 | 3300005563 | Corn Rhizosphere | LIGAAMMRLDLLETLGAETFAIVAGFTLVFLGGIAIAAYGVVRAIEWASRG* |
| Ga0068851_106301133 | 3300005834 | Corn Rhizosphere | IGAAVNRLDLFETLGAETFAVAAGFALVLLGVIAIAAYAVVRAIEWASRA* |
| Ga0068862_1003821673 | 3300005844 | Switchgrass Rhizosphere | VGLALIGAAVNRLDLFETLGDETFTLAVGFALVLLGVIAIAAYAVVRAIEWASRA* |
| Ga0075432_100357572 | 3300006058 | Populus Rhizosphere | MAVGLALIGAAVNRLDLFETLGDDTFALAVGFALVLLGVIAIAAYAVVRAIEWASRA* |
| Ga0075422_104507142 | 3300006196 | Populus Rhizosphere | ETFAVAAGFALVLLGVIAIAAYGVVRAIEWASRG* |
| Ga0079221_109044372 | 3300006804 | Agricultural Soil | FETLGDDTFALAVGFALVLLGVIAIAAYAVVRAIEWASRA* |
| Ga0075431_1015210871 | 3300006847 | Populus Rhizosphere | LDLFETLGDETFTLAVGFALVLLGVIAIAAYAVVRAIEWASRA* |
| Ga0075433_107379043 | 3300006852 | Populus Rhizosphere | LIGAAVNRLDLFETLGAETFAVAVGFALVLLGVIALAAYAVVRAIEWASRA* |
| Ga0075425_1015994301 | 3300006854 | Populus Rhizosphere | SRLAIGVAGAITAVGLALIGAAVNRLDLFETLGDETFTLAVGFALVLLGVIAIAAYAVVRAIEWASRA* |
| Ga0075425_1023322552 | 3300006854 | Populus Rhizosphere | AITAVGLALIGAAVNRLDLFETLGDETFTLAVGFALVLLGIIAIAAYAVVRAIEWASRA* |
| Ga0075425_1028008242 | 3300006854 | Populus Rhizosphere | AITAVGLALIGAAVNRLDLFETLGDETFTLAVGFALVLLGVIAIAAYAVVRAIEWASRA* |
| Ga0075434_1003880501 | 3300006871 | Populus Rhizosphere | VAGAITAVGLALIGAAVNRLDLFETLGDETFTLAVGFALVLLGVIAIAAYAVVRAIEWASRA* |
| Ga0079219_115766652 | 3300006954 | Agricultural Soil | FETLGDETFTLAVGFALVLLGVIAIAAYAVVRAIEWASGA* |
| Ga0075419_104668694 | 3300006969 | Populus Rhizosphere | MAVGLALIGAAVNRLDLFETLGAETFAVAVGFALVLLGVFALAAYAVVRAIEWASRA* |
| Ga0075435_1002324001 | 3300007076 | Populus Rhizosphere | LAVGLALIGAAVNRLDLFETLGAETFALAAGFALVLLGVIAIAAYGVVR |
| Ga0111539_116220232 | 3300009094 | Populus Rhizosphere | MAVGLALIGAAVNRLDLFETLGAETFAVAVGFALVLLGVIALAAYAVVRAIEWASRA* |
| Ga0075418_112959283 | 3300009100 | Populus Rhizosphere | ALIGAAVNRLDLFETLGDETFTLAVGFALVLLGVIAIAAYAVVRAIEWASRA* |
| Ga0114129_110922222 | 3300009147 | Populus Rhizosphere | MAVGLVLIGAAVNRLDLFETLGAETFAVAAGFALVLLGVIAIAAYAVV |
| Ga0114129_118832811 | 3300009147 | Populus Rhizosphere | MAVGLALIGAAVNRLDLFETLGAETFAVAAGFALVLLGVIAIAAYAVV |
| Ga0114129_124048351 | 3300009147 | Populus Rhizosphere | IGAAVNRLDLFETLGAETFAVAAGFALVLLGVIAIAAYAVVRVIEWANRA* |
| Ga0111538_105072891 | 3300009156 | Populus Rhizosphere | AIGLALIGAAISRLDLFETLGADTLAVVAGFALVLLGVIAIATYGVIRAIEWVSRER* |
| Ga0111538_129791391 | 3300009156 | Populus Rhizosphere | MAVGLALIGAAVNRLDLFETLGDETFAVAAGFALVLLGVSAIAAYGVVRAIEWAGRA* |
| Ga0075423_114685771 | 3300009162 | Populus Rhizosphere | VAGAITAVGLALIGAAVNRLDLFETLGAETFAVAVGFALVLLGVIALAAYAVVRAIEWASRA* |
| Ga0075423_118454592 | 3300009162 | Populus Rhizosphere | VNRLDLFETLGDETFTLAVGFALVLLGVIAIAAYAVVRAIEWASRA* |
| Ga0134128_111603183 | 3300010373 | Terrestrial Soil | FETLGDETFTLAVGFALVLLGVIAIAAYAVVRAIEWASRA* |
| Ga0105239_130093212 | 3300010375 | Corn Rhizosphere | MALGLAFIGAAVTRLELFEMLSAQTFAIAAGFALLLVVVAIAAYGVVRAIEWASRG* |
| Ga0134124_120451251 | 3300010397 | Terrestrial Soil | AVGLALIGAAMMRLDLLETLGAETFAIVAGFTLVFLGGIAIAAYGVVRAIEWASRG* |
| Ga0134122_114120061 | 3300010400 | Terrestrial Soil | IIAVGLALIGAAMMRLDLLETLGAETFAIVAGFTLVFLGGIAIAAYGVVRAIEWASRG* |
| Ga0105246_1000055122 | 3300011119 | Miscanthus Rhizosphere | MAVGLALIGAAVNRLDLFETLGAETFVVAAGFALVLLGVIAIAAYGVVRAIEWASRA* |
| Ga0150984_1027227562 | 3300012469 | Avena Fatua Rhizosphere | MAVGLALVGAAVNRLNLFETLGDETFAYALGFALVLLGVIAIASYAVVRVIEWASRA* |
| Ga0157304_10699592 | 3300012882 | Soil | MAVGLALIGAAVNRLDLFETLGDETFAVAAGFALVLLGVIVIAAYAVVRVIEWASRA* |
| Ga0157305_100696003 | 3300012891 | Soil | MAVGLALIGAAVNRLDLFETLGDETFTLAVGFALVLLGVIAIAAYAVVRAIEWASRA* |
| Ga0157285_100758161 | 3300012897 | Soil | ALIGAAISRLDLFETLGADTLGVIAGFALVLLGVFAIATYGVIRAIEWVSRGG* |
| Ga0157286_100644961 | 3300012908 | Soil | VGLALSGAAVNRLDLFETLGAETFVVAAGFALVLLGVIAIAAYGVVRAIEWASRA* |
| Ga0157301_100185145 | 3300012911 | Soil | IAIAGAIIAVGLALIGAAMMRLDLLETLGAETFAIVAGFTLVFLGGIAIAAYGVVRAIEWASRG* |
| Ga0157310_103804862 | 3300012916 | Soil | LFETLGDETFTLAVGFALVLLGVIAIAAYAVVRAIEWASRA* |
| Ga0164300_100914543 | 3300012951 | Soil | MAVGLALIGAAVNRLDLFETLGDETFTLAVGFALVLLGVIAIAAYAVVQPSNGL |
| Ga0157307_10397913 | 3300013096 | Soil | VAGAITAVGLALIGAAVNRLDLFETLGAETFAVAVGFALVLLGVIAIAAYAVVRAIEWASRA* |
| Ga0157371_114391752 | 3300013102 | Corn Rhizosphere | AIMAVGLALIGAAVNRLDLFETLGDETFAVAAGFALVLLGVIAIVAYGVVRAIEWASRA* |
| Ga0157374_102666241 | 3300013296 | Miscanthus Rhizosphere | IGVAGAIMAVGLALSGAAVNRLDLFETLGAETFVVAAGFALVLLGVIAIAAYGVVRAIEWASRA* |
| Ga0157374_103978651 | 3300013296 | Miscanthus Rhizosphere | AIMAVGLGLIGAAVNRLDLFETLGAEAFAYAAVFALVLLGVISLAAYALVRAIEWANRA* |
| Ga0157378_1000056234 | 3300013297 | Miscanthus Rhizosphere | MAVGLALIAAAVNRLDLFETLGAETFAVAAGFALVLLGVIAIAAYAVV |
| Ga0157372_101042425 | 3300013307 | Corn Rhizosphere | GVAAAIMAVGLGLIGAAVNRLDLFETLGAEAFAYAAVFALVLLGVISIAAYALVRAIEWANRA* |
| Ga0120179_10339884 | 3300013763 | Permafrost | DTFEIVVGFTLVLLGGIAIAAYGVVRAIEWASRGRQG* |
| Ga0157377_100085958 | 3300014745 | Miscanthus Rhizosphere | AIGVAGAIMAVGLALIGAAVNRLDLFETLGDETFTLAVGFALVLLGVIAIAAYAVVRAIEWASRA* |
| Ga0157377_100457166 | 3300014745 | Miscanthus Rhizosphere | LLETLGAETFAIVAGFTLVFLGGIAIAAYGVVRAIEWASRG* |
| Ga0132258_123760814 | 3300015371 | Arabidopsis Rhizosphere | MAVGLALVGVAVNRLDLFETLGPETFASAVGFALVLLGVFAITAYAVVRVIEWAS |
| Ga0163161_106745171 | 3300017792 | Switchgrass Rhizosphere | AIMAVGLGLIGAAVNRLDLFETLGAEAFAYAAVFALVLLGVISIAAYALVRAIEWANRA |
| Ga0173481_102583633 | 3300019356 | Soil | GVAGAITAVGLALIGAAVNRLDLFETLGDETFTLAVGFALVLLGVIAIAAYAVVRAIEWASRA |
| Ga0173482_100270021 | 3300019361 | Soil | GAAVNRLDLFETLGAETFAYVAVFALVLLGVISIAAYALVRAIEWANRA |
| Ga0173482_104333792 | 3300019361 | Soil | MAVGLALSGATVNRLDLFETLGAETFVVAAGFALVLLGVIAIAAYGVVRAIEWASRA |
| Ga0224712_106701382 | 3300022467 | Corn, Switchgrass And Miscanthus Rhizosphere | FSRLAIGVAGAIIAVGLALVGAAINQLDLFETLGAETFAYAVGFALVLLGVMAIAAYAVVRAIEWASRA |
| Ga0247745_10430721 | 3300022898 | Soil | MAVGLALIGAAVNRLDLFETLGDETFTLAVGFALVLLGVIAIAAYA |
| Ga0247754_11711672 | 3300023102 | Soil | MAVGLALSGAAVNRLDLFETLGAETFVVAAGFALVLLGVIAIAAYGVVRAIEWASRA |
| Ga0247800_11089641 | 3300023263 | Soil | ALISAAMMRLDLLETLGAETFAIVAGFTLVFLGGIAIAAYGVVRAIEWASRG |
| Ga0247794_102531431 | 3300024055 | Soil | GAAVNRLDLFETLGAEAFAYAAVFALVLLGVISIAAYALVRAIEWANRA |
| Ga0207682_100768062 | 3300025893 | Miscanthus Rhizosphere | AIGVAGAIIAMGLALVGAAINQLDLFETLGAETFAYAVGFALVLLGVMAIAAYAVVRAIEWASRA |
| Ga0207699_110129441 | 3300025906 | Corn, Switchgrass And Miscanthus Rhizosphere | AIIAVGLALIGAAMMRLDLLETLGAETFAIVAGFTLVFLGGIAIAAYGVVRAIEWASRG |
| Ga0207705_104434671 | 3300025909 | Corn Rhizosphere | MAVGLALIGAAVNRLDLFETLGAETFAVAAGFALDLLGVIAIAAYAVVRAIEWASRA |
| Ga0207654_101163381 | 3300025911 | Corn Rhizosphere | LFETLGAETFAVAAGFALVLLGVIAIAAYAVVRAIEWASRA |
| Ga0207695_110442993 | 3300025913 | Corn Rhizosphere | IGAAVNRLDLFETLGDETFTLAVGFALVLLGVIAIAAYAVVRAIEWASRA |
| Ga0207671_100457726 | 3300025914 | Corn Rhizosphere | LFETLGAETFAVAAGFALVLLAVIAIAAYAVVRAIEWASRA |
| Ga0207663_115211171 | 3300025916 | Corn, Switchgrass And Miscanthus Rhizosphere | DLFETLGDETFTLAVGFALVLLGVIAIAAYAVVRAIEWASRA |
| Ga0207649_102316151 | 3300025920 | Corn Rhizosphere | AAINQLYLFETLGAETFAYAVDFALVLLGVMAIAAYAVVRAIEWASRA |
| Ga0207649_116519162 | 3300025920 | Corn Rhizosphere | ETLGDETFTLAVGFALVLLGVIAIAAYAVVRAIEWASRA |
| Ga0207691_116462201 | 3300025940 | Miscanthus Rhizosphere | IGVAGAITAVGLALIGAAVNRLDLFETLGDETFTLAVGFALVLLGVIAIAAYAVVRAIEWASRA |
| Ga0207640_100150777 | 3300025981 | Corn Rhizosphere | MAVGLALIGAAVNRLDLFETLGAETFAVAAGFALVLLAVIAIAAYAVVRAIEWASRA |
| Ga0307468_1015931372 | 3300031740 | Hardwood Forest Soil | MAVGLALSGAAVNRLDLFETLGAETFVVAAGFALVLLGVIAIAAYGVVRAFEWASRA |
| Ga0310904_100133236 | 3300031854 | Soil | MAVGLALIGAAVNRLDLFETLGAETFAVAAGFALVLLGVIAIAAYAVVRAIEWASR |
| Ga0310900_100953884 | 3300031908 | Soil | MAVGLALIGAAVNRLDLFETLGAETFAVAVGFALVLLGVIAIAAYAVVRAIEWASRA |
| Ga0310899_101635001 | 3300032017 | Soil | TLGDETFTLAVGFALVLLGVIAIAAYAVVRAIEWASRA |
| Ga0307471_1042957321 | 3300032180 | Hardwood Forest Soil | NQLDLFETLGAETFAYAVGFALVLLGVMAIAAYAVVRAIEWASRA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |