Metagenome Family F103522

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F103522
Family Type	Metagenome
Number of Sequences	101
Average Sequence Length	96 residues
Representative Sequence	MLRSLAVFAIVSTLHFFLSVLGLAFVLPAAFETQGGAGFWAAPGKSMLAWMANVLLAPLWFLPAGAGFGFLHVAAVSVLFGLAAAGLSHLWRKRRT
Number of Associated Samples	77
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.99 %
% of genes near scaffold ends (potentially truncated)	25.74 %
% of genes from short scaffolds (< 2000 bps)	88.12 %
Associated GOLD sequencing projects	69
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.45

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (64.356 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (20.792 % of family members)
Environment Ontology (ENVO)	Unclassified (36.634 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (54.455 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 64.52% β-sheet: 0.00% Coil/Unstructured: 35.48%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.45
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.45
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF01315	Ald_Xan_dh_C	35.64
PF01977	UbiD	20.79
PF02738	MoCoBD_1	13.86
PF13181	TPR_8	4.95
PF12796	Ank_2	2.97
PF03401	TctC	1.98
PF01551	Peptidase_M23	0.99
PF04828	GFA	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG0043	3-polyprenyl-4-hydroxybenzoate decarboxylase	Coenzyme transport and metabolism [H]	20.79
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	1.98
COG3791	Uncharacterized conserved protein	Function unknown [S]	0.99

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	64.36 %
Unclassified	root	N/A	35.64 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	64.36 %
Unclassified	root	N/A	35.64 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	64.36 %
Unclassified	root	N/A	35.64 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	36.63 %
Unclassified	root	N/A	35.64 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.64 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	5.94 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.64 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	4.95 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.99 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.99 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.64 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.99 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.99 %
Brucellaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Brucellaceae	0.99 %
Roseobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.64 %
unclassified Rhodospirillaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae	0.99 %
Brucella/Ochrobactrum group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Brucellaceae → Brucella/Ochrobactrum group	0.99 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.99 %
Roseobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.64 %
Brucella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Brucellaceae → Brucella/Ochrobactrum group → Brucella	0.99 %
Rhodospirillaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	0.99 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.99 %
Roseobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.64 %
Brucella rhizosphaerae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Brucellaceae → Brucella/Ochrobactrum group → Brucella → Brucella rhizosphaerae	0.99 %
Rhodospirillaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	0.99 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.99 %
Roseobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae	0.99 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_108814286	Not Available	530	Open in IMG/M
3300000956\|JGI10216J12902_115685683	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae	950	Open in IMG/M
3300004463\|Ga0063356_100450050	All Organisms → cellular organisms → Bacteria	1680	Open in IMG/M
3300004463\|Ga0063356_105492950	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Brucellaceae → Brucella/Ochrobactrum group → Brucella → Brucella rhizosphaerae	544	Open in IMG/M
3300004480\|Ga0062592_102703786	Not Available	502	Open in IMG/M
3300005328\|Ga0070676_10177634	All Organisms → cellular organisms → Bacteria	1382	Open in IMG/M
3300005331\|Ga0070670_101870563	All Organisms → cellular organisms → Bacteria	553	Open in IMG/M
3300005333\|Ga0070677_10182700	All Organisms → cellular organisms → Bacteria → Proteobacteria	1000	Open in IMG/M
3300005340\|Ga0070689_101494647	All Organisms → cellular organisms → Bacteria → Proteobacteria	612	Open in IMG/M
3300005345\|Ga0070692_11408563	Not Available	504	Open in IMG/M
3300005354\|Ga0070675_100111226	All Organisms → cellular organisms → Bacteria → Proteobacteria	2318	Open in IMG/M
3300005356\|Ga0070674_102146492	Not Available	510	Open in IMG/M
3300005438\|Ga0070701_10759761	All Organisms → cellular organisms → Bacteria → Proteobacteria	658	Open in IMG/M
3300005440\|Ga0070705_100802504	Not Available	749	Open in IMG/M
3300005617\|Ga0068859_100870078	All Organisms → cellular organisms → Bacteria → Proteobacteria	987	Open in IMG/M
3300005718\|Ga0068866_10155144	Not Available	1330	Open in IMG/M
3300005840\|Ga0068870_10070605	All Organisms → cellular organisms → Bacteria	1904	Open in IMG/M
3300006196\|Ga0075422_10476100	Not Available	563	Open in IMG/M
3300006844\|Ga0075428_100632820	All Organisms → cellular organisms → Bacteria → Proteobacteria	1141	Open in IMG/M
3300006844\|Ga0075428_102553453	Not Available	522	Open in IMG/M
3300006845\|Ga0075421_100346910	All Organisms → cellular organisms → Bacteria → Proteobacteria	1794	Open in IMG/M
3300006845\|Ga0075421_102210362	All Organisms → cellular organisms → Bacteria	580	Open in IMG/M
3300006846\|Ga0075430_100067815	All Organisms → cellular organisms → Bacteria	2994	Open in IMG/M
3300006846\|Ga0075430_101281919	All Organisms → cellular organisms → Bacteria	603	Open in IMG/M
3300006847\|Ga0075431_100163080	All Organisms → cellular organisms → Bacteria	2291	Open in IMG/M
3300006847\|Ga0075431_101533699	All Organisms → cellular organisms → Bacteria → Proteobacteria	624	Open in IMG/M
3300006852\|Ga0075433_10678258	Not Available	903	Open in IMG/M
3300006876\|Ga0079217_10024406	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	2174	Open in IMG/M
3300006876\|Ga0079217_10404401	Not Available	808	Open in IMG/M
3300006876\|Ga0079217_11231830	All Organisms → cellular organisms → Bacteria → Proteobacteria	572	Open in IMG/M
3300006894\|Ga0079215_10027406	All Organisms → cellular organisms → Bacteria → Proteobacteria	1994	Open in IMG/M
3300006894\|Ga0079215_10139407	Not Available	1139	Open in IMG/M
3300006918\|Ga0079216_11757831	All Organisms → cellular organisms → Bacteria → Proteobacteria	531	Open in IMG/M
3300006969\|Ga0075419_10384676	Not Available	959	Open in IMG/M
3300006969\|Ga0075419_11121962	All Organisms → cellular organisms → Bacteria	577	Open in IMG/M
3300007004\|Ga0079218_10209011	All Organisms → cellular organisms → Bacteria → Proteobacteria	1498	Open in IMG/M
3300009094\|Ga0111539_10062593	All Organisms → cellular organisms → Bacteria → Proteobacteria	4403	Open in IMG/M
3300009094\|Ga0111539_11283532	Not Available	850	Open in IMG/M
3300009100\|Ga0075418_10911203	Not Available	950	Open in IMG/M
3300009100\|Ga0075418_11013244	Not Available	899	Open in IMG/M
3300009156\|Ga0111538_10099419	All Organisms → cellular organisms → Bacteria	3697	Open in IMG/M
3300009156\|Ga0111538_11052326	All Organisms → cellular organisms → Bacteria	1029	Open in IMG/M
3300009162\|Ga0075423_11848321	Not Available	652	Open in IMG/M
3300011417\|Ga0137326_1148985	Not Available	541	Open in IMG/M
3300011423\|Ga0137436_1019895	Not Available	1662	Open in IMG/M
3300012146\|Ga0137322_1006233	Not Available	1448	Open in IMG/M
3300014326\|Ga0157380_12313424	Not Available	602	Open in IMG/M
3300014745\|Ga0157377_10178049	All Organisms → cellular organisms → Bacteria → Proteobacteria	1335	Open in IMG/M
3300015200\|Ga0173480_10664513	Not Available	648	Open in IMG/M
3300015200\|Ga0173480_10948175	All Organisms → cellular organisms → Bacteria	563	Open in IMG/M
3300018422\|Ga0190265_10044988	All Organisms → cellular organisms → Bacteria → Proteobacteria	3799	Open in IMG/M
3300018422\|Ga0190265_13549710	Not Available	520	Open in IMG/M
3300018429\|Ga0190272_10497735	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1034	Open in IMG/M
3300018432\|Ga0190275_10449591	Not Available	1311	Open in IMG/M
3300018432\|Ga0190275_11992045	All Organisms → cellular organisms → Bacteria	659	Open in IMG/M
3300018469\|Ga0190270_11210907	Not Available	794	Open in IMG/M
3300018469\|Ga0190270_12516146	Not Available	577	Open in IMG/M
3300018476\|Ga0190274_10046855	All Organisms → cellular organisms → Bacteria → Proteobacteria	3094	Open in IMG/M
3300018481\|Ga0190271_10229489	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1873	Open in IMG/M
3300019377\|Ga0190264_10240763	Not Available	1040	Open in IMG/M
3300019377\|Ga0190264_12006064	Not Available	530	Open in IMG/M
3300019884\|Ga0193741_1046996	Not Available	1114	Open in IMG/M
3300020009\|Ga0193740_1012102	Not Available	1387	Open in IMG/M
3300021260\|Ga0213898_100403	Not Available	1007	Open in IMG/M
3300021264\|Ga0213895_101835	Not Available	812	Open in IMG/M
3300021272\|Ga0213899_100826	All Organisms → cellular organisms → Bacteria → Proteobacteria	917	Open in IMG/M
3300021280\|Ga0213900_100423	All Organisms → cellular organisms → Bacteria → Proteobacteria	1433	Open in IMG/M
3300025908\|Ga0207643_10016364	All Organisms → cellular organisms → Bacteria → Proteobacteria	4045	Open in IMG/M
3300025925\|Ga0207650_10846499	All Organisms → cellular organisms → Bacteria	776	Open in IMG/M
3300025936\|Ga0207670_10636817	All Organisms → cellular organisms → Bacteria	878	Open in IMG/M
3300025942\|Ga0207689_10119411	Not Available	2169	Open in IMG/M
3300025960\|Ga0207651_10152330	All Organisms → cellular organisms → Bacteria → Proteobacteria	1802	Open in IMG/M
3300026121\|Ga0207683_10470288	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1160	Open in IMG/M
3300027637\|Ga0209818_1152002	All Organisms → cellular organisms → Bacteria	650	Open in IMG/M
3300027880\|Ga0209481_10085735	Not Available	1507	Open in IMG/M
3300027886\|Ga0209486_10015223	All Organisms → cellular organisms → Bacteria → Proteobacteria	3516	Open in IMG/M
3300027886\|Ga0209486_10159686	All Organisms → cellular organisms → Bacteria	1249	Open in IMG/M
3300027907\|Ga0207428_10209473	All Organisms → cellular organisms → Bacteria	1465	Open in IMG/M
3300028380\|Ga0268265_10251975	All Organisms → cellular organisms → Bacteria	1564	Open in IMG/M
3300028809\|Ga0247824_10150108	All Organisms → cellular organisms → Bacteria	1253	Open in IMG/M
3300028812\|Ga0247825_10568557	Not Available	810	Open in IMG/M
3300031547\|Ga0310887_10053847	All Organisms → cellular organisms → Bacteria	1820	Open in IMG/M
3300031548\|Ga0307408_100193373	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1641	Open in IMG/M
3300031548\|Ga0307408_101102809	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	736	Open in IMG/M
3300031548\|Ga0307408_101699295	All Organisms → cellular organisms → Bacteria	601	Open in IMG/M
3300031731\|Ga0307405_10383615	All Organisms → cellular organisms → Bacteria → Proteobacteria	1095	Open in IMG/M
3300031852\|Ga0307410_11030171	All Organisms → cellular organisms → Bacteria → Proteobacteria	711	Open in IMG/M
3300031908\|Ga0310900_10103114	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	1835	Open in IMG/M
3300031911\|Ga0307412_11207475	Not Available	677	Open in IMG/M
3300031944\|Ga0310884_10763074	All Organisms → cellular organisms → Bacteria	589	Open in IMG/M
3300032002\|Ga0307416_100746493	All Organisms → cellular organisms → Bacteria → Proteobacteria	1071	Open in IMG/M
3300032005\|Ga0307411_10503862	All Organisms → cellular organisms → Bacteria → Proteobacteria	1024	Open in IMG/M
3300032005\|Ga0307411_11176543	All Organisms → cellular organisms → Bacteria	694	Open in IMG/M
3300032005\|Ga0307411_11925447	All Organisms → cellular organisms → Bacteria	551	Open in IMG/M
3300032012\|Ga0310902_10579578	All Organisms → cellular organisms → Bacteria	742	Open in IMG/M
3300032013\|Ga0310906_10108734	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1538	Open in IMG/M
3300032157\|Ga0315912_10825730	All Organisms → cellular organisms → Bacteria	737	Open in IMG/M
3300032179\|Ga0310889_10668529	Not Available	540	Open in IMG/M
3300033550\|Ga0247829_10024660	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	3899	Open in IMG/M
3300033550\|Ga0247829_11706487	All Organisms → cellular organisms → Bacteria	519	Open in IMG/M
3300033551\|Ga0247830_11188773	All Organisms → cellular organisms → Bacteria → Proteobacteria	609	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	51.49%
Host-Associated	Host-Associated	48.51%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	48.51%
Plants	Host-Associated → Plants	48.51%
Aquatic	Environmental → Aquatic	2.97%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	48.51%
Rhizosphere	Host-Associated → Plants → Rhizosphere	39.60%
Rhizoplane	Host-Associated → Plants → Rhizoplane	8.91%
Sediment	Environmental → Aquatic → Sediment	2.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	43.56%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	32.67%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	7.92%
Soil	Host-Associated → Plants → Rhizosphere → Soil	6.93%
Loam	Environmental → Terrestrial → Soil → Loam	4.95%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.97%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	32.67%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.80%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	10.89%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	10.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	7.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	6.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.95%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.97%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	20.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	19.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	10.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	9.90%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	9.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	3.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	3.96%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	2.97%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.98%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.98%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	1.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.99%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.99%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.99%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.99%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005333	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG	Host-Associated	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006876	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200	Environmental	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300011417	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT500_2	Environmental	Open in IMG/M
3300011423	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT119_2	Environmental	Open in IMG/M
3300012146	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT400_2	Environmental	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300019884	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2s2	Environmental	Open in IMG/M
3300020009	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2s1	Environmental	Open in IMG/M
3300021260	Switchgrass-associated microbial communities from reclaimed mine lands soil in West Virginia, United States ? Hamp_Shaw_1	Environmental	Open in IMG/M
3300021264	Switchgrass-associated microbial communities from reclaimed mine lands soil in West Virginia, United States ? Hamp_Cave_1	Environmental	Open in IMG/M
3300021272	Switchgrass-associated microbial communities from reclaimed mine lands soil in West Virginia, United States ? Hamp_Shaw_2	Environmental	Open in IMG/M
3300021280	Switchgrass-associated microbial communities from reclaimed mine lands soil in West Virginia, United States ? Hamp_Shaw_3	Environmental	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027637	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200 (SPAdes)	Environmental	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300027886	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028809	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day48	Environmental	Open in IMG/M
3300028812	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031911	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1	Host-Associated	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032005	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1	Host-Associated	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032157	Garden soil microbial communities collected in Santa Monica, California, United States - V. faba soil	Environmental	Open in IMG/M
3300032179	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D2	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1088142861	3300000956	Soil	MLRSLAVFSIVSALHFVLSVLGLLFVLPAAFETQGGAGFWAAPGKSLLAGMAGVLLAPLNLFPARAGFGYAEIAAVSVLFGLGAVGLYRLWRMRKTT*
JGI10216J12902_1156856832	3300000956	Soil	MFSIVSTLHFVLSVLSLAFILPAAFETQGGAGFWAAPGKSTLAWMSNVLLAPLWFFPTRTDFGFLHVAAASVLFGLAAVGILHLWRKWRT*
Ga0063356_1004500502	3300004463	Arabidopsis Thaliana Rhizosphere	MLRSLAVFSIVGALHFFLSVLGLLFVLPAAFETQGGSGFWAAPGKSLLAGMATVLLAPLGFIPAGPGFGFLEIAAVSAMFGLGAVGLYQLWGMVRRRSAP*
Ga0063356_1054929501	3300004463	Arabidopsis Thaliana Rhizosphere	MLRSLAVFSIVSALHFVLSVLGLLFVLPAAFETQGGAGFWAAPGKSLLAGMAGVLLAPLNLFPARAGFGFLEIAAVSALFGLAAVALLLGWRKWRT*
Ga0062592_1027037861	3300004480	Soil	MLRSLAVFSIVSALHFFLSVLGLLFVLPAAFETQGGAGFWAAPGKSLLAGMTTVLLAPLNLIPARAGFGYLEIAAVSALFGLAAAGVHGLWRRITRPGAESVLPKSRPNDRVR*
Ga0070676_101776341	3300005328	Miscanthus Rhizosphere	MLRSLAVFSIVSALHFFLSVLGLLFVLPAAFETQGGSGFWAAPGKSLLAGMATVLLAPLAFIPAGPGFGFLEIAAVSALFGVAAIGLDHLWRLLRRR*
Ga0070670_1018705632	3300005331	Switchgrass Rhizosphere	MLRSLAVFSIVGALHFFLSVLGLLFVLPAAFETQGGSGFWAAPGKSLLAGMATVLLAPLGFIPAGPGFGFLEIAAVS
Ga0070677_101827002	3300005333	Miscanthus Rhizosphere	MLRSLAVFSIVGALHFFLSVLGLLFVLPAAFETQGGSGFWAAPGKSLLAGMATVLLAPLAFIPAGPGFGFLEIAAVSALFGVAALGLDRLWRLLRRRLE*
Ga0070689_1014946472	3300005340	Switchgrass Rhizosphere	SLAVFSIVGALHFFLSVLGLLFVLPAAFETQGGSGFWAAPGKSLLAGMATVLLAPLAFIPAGPGFGFLEIAAVSALFGVAALGLDHLWRLLRRRLE*
Ga0070692_114085631	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	MLRSLAVFSIVSALHFFLSVLGLLFVLPAAFETQGAGFWAAPGKSLLAGMTAVLLAPLDFVPTRPGSGYLEIAAASALFGLGAVGLHFGWRKWRA*
Ga0070675_1001112262	3300005354	Miscanthus Rhizosphere	MLRSLAVFSIVGALHFFLSVLGLLFVLPAAFETQGGSGFWAAPGKSLLAGMATVLLAPLAFIPAGPGFGFLEIAAVSALFGVAALGLDHLWRLLRRRLE*
Ga0070674_1021464921	3300005356	Miscanthus Rhizosphere	MLRSLAVFSIVGALHFFLSVLGLLFVLPAAFETQGGSGFWAAPGKSLLAGMATVLLAPLSLIPAGAGFGFLEIAAVSVMFGVAALGLDYLWR
Ga0070701_107597611	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	MLRSLAVFSIVGALHFFLSVLGLLFVLPAAFETQGGSGFWAAPGKSLLAGMATVLLAPLAFIPAGPGFGFLEIAAVSALFGVAALGVDHLWRLLRRR
Ga0070705_1008025041	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MLRSLAVFSIVGALHFFLSVLGLLFVLPAAFETQGGSGFWAAPGKSLLAGMASVLLAPLAFIPAGPGFGFLEIAAVSALFG
Ga0068859_1008700781	3300005617	Switchgrass Rhizosphere	MLRSLAVFSIVGALHFFLSVLGLLFVLPAAFETQGGSGFWAAPGKSLLAGMATVLLAPLAFIPAGPGFGFLEIAAVSALFGVAALGVDHLWRLLRRRSAP*
Ga0068866_101551442	3300005718	Miscanthus Rhizosphere	VGALHFFLSVLGLLFVLPAAFETQGGSGFWAAPGKSLLAGMATVLLAPLGFIPAGPGFGFLEIAAVSAMFGLGAVGLYQLWGMVRRRSAP*
Ga0068870_100706052	3300005840	Miscanthus Rhizosphere	MLRSLAVFSIVGALHFFLSVLGLLFVLPAAFETQGGSGFWAAPGKSLLAGMATVLLAPLAFIPAGPGFGFLEIAAVSALFGVAAIGLDHLWRLLRRR*
Ga0075422_104761002	3300006196	Populus Rhizosphere	FFLSVLGLLFVLPAAFETQGGAGFWAAPGKSLLAGMTTVLLAPLNLIPARAGFGYLEIAAVSALFGLAAAGVHGLWRRITRPGAESVLSKSRPNAE*
Ga0075428_1006328202	3300006844	Populus Rhizosphere	MLRSLAVFSIVSALHFVLSVLGLLFVLPAAFETQGGAGFWAAPGKSLLAGMAGVLLAPLNLFPARTGFGYAEIAAVSVLFGLGAVGLYRLWRMRKTT*
Ga0075428_1025534532	3300006844	Populus Rhizosphere	ALHFVLSVLGLLFVLPAAFETQGGAGFWAAPGKSLLAGMAGVLLAPLNLFPARTGFGYPEIAAVSALFGLAAVALVLGWRKWRT*
Ga0075421_1003469103	3300006845	Populus Rhizosphere	HFVLSVLGLLFVLPAAFETQGGAGFWAAPGKSLLAGMAGVLLAPLNLFPARTGFGYPEIAAVSALFGLAAVALVLGWRKWRT*
Ga0075421_1022103622	3300006845	Populus Rhizosphere	VLSVLGLLFVLPAAFETQGGAGFWAAPGKSLLAGMAGVLLAPLNFFPARAGFGFLEIAAVSVMFGMVALGLVAVWRRLRRRPASDRNNEGS*
Ga0075430_1000678154	3300006846	Populus Rhizosphere	MLRSLAVFSIVGALHFVLSVLGLLFVLPAAFETQGGAGFWAAPGKSLLAGMAGVLLAPLNLFPARTGFGYPEIAAVSALFGLAAVALVLGWRKWRT*
Ga0075430_1012819192	3300006846	Populus Rhizosphere	MLRSLTVFSIVGTLHFLLSVLGLAFILPAAFETQGGAGFWAAPGKSMLVWMSNVLLAPLWFLPTGTDFGFRHVAAVSVLFGLAAAGLFHLWRKRRI*
Ga0075431_1001630804	3300006847	Populus Rhizosphere	MLRSLAVFSIVSALHFVLSVLGLLFVLPAAFETQGGAGFWAAPGKSLLAGMAGVLLAPLNLFPARTGFGYPEIAAVSALFGLAAVALVLGWRKWRT*
Ga0075431_1015336992	3300006847	Populus Rhizosphere	MLRSLAVFSIVSALHFVLSVLGLLFVLPAAFETQGGAGFWAAPGKSLLAGMAGVLLAPLNFFPARAGFGFFEIAAVSVMFGMVALGLVAVWRRLRRRPASDRNNEGS*
Ga0075433_106782582	3300006852	Populus Rhizosphere	MLRSLAVFSIVSALHYFLSVLGLLFVLPAAFDTQADAGFWAAPGKSLLAGMTAVLLAPLDFVPTRPGSGYLEIAAASALFGLGAVGLHFGWRKWRA*
Ga0079217_100244062	3300006876	Agricultural Soil	MLRSLAVFAIVSTLHFLLSVLGLAFVLPAAFETQGGAGFWAAPGKSMLAWMSNVLLAPLWFFPTGTELGFLHIAAVSVLFGVAAAGLFHRWRKPRT*
Ga0079217_104044011	3300006876	Agricultural Soil	MLRSLTVFSIAGTLHFLLSVLGLAFILPAAFETQGGAGFWAAPGKSMLVWMSNVLLAPLWLLPTGTDFGFRHVAAVSVLFGLAAAGLFHLWRKPRI*
Ga0079217_112318302	3300006876	Agricultural Soil	MLRSLAVFAIVSTLHFFLSVLGLAFILPAAFETQGGAGFWAAPGKSMLAWMANVLLAPLWFLPARAAFGFLHVAAVSVLFGLAAVGLFHLWRKRRT*
Ga0079215_100274062	3300006894	Agricultural Soil	MLRSLAVFAIVSTLHFFLSVFGLAFVLPAAFETQGGAGFWAAPGKSMLVWMSNVLLAPLWFFPTGTEFGFLHIAAVSLLFGLAVAGLFHRWRKRRT*
Ga0079215_101394072	3300006894	Agricultural Soil	MLRSLTVFSIAGTLHFLLSVLGLAFILPAAFETQGGAGFWAAPGKSMLVWMSNVLLAPLWLFPPADFGFRHVAAVSVLFGLVAAAVFHRWRRRRT*
Ga0079216_117578311	3300006918	Agricultural Soil	AGTLHFLLSVLGLAFILPAAFETQGGAGFWAAPGKSMLVWMSNVLLAPLWFLPTATDFGFRHVAAVSVIFGLVAAGLFHFWRKRRV*
Ga0075419_103846762	3300006969	Populus Rhizosphere	SLAVFSIVSALHFVLSVLGLLFVLPAAFETQGGAGFWAAPGKSLLAGMAGVLLAPLNLFPARTGFGYPEIAAVSALFGLAAVALVLGWRKWRT*
Ga0075419_111219621	3300006969	Populus Rhizosphere	SLAVFSIVSALHFVLSVLGLLFVLPAAFETQGGAGFWAAPGKSLLAGMAGVLLAPLNLFPARAGFGYAEIAAVSVLFGLGAVGLYRLWRMRKTT*
Ga0079218_102090112	3300007004	Agricultural Soil	MLRSLTVFSIAGTLHFLLSVLGLAFILPAAFETQGGAGFWAAPGKSMLVWMSNVLLAPLWFLPTATDFGFRHVAAVSVIFGLVAAGLFHFWRKRRV*
Ga0111539_100625936	3300009094	Populus Rhizosphere	MLRSLAAFSIVGALHFFLSVLGLLFVLPAAFETQGGAGFWAAPGKSLLAGMAGILLSPLAFFPAGTGFNYLEIVAVSAMFGCA
Ga0111539_112835321	3300009094	Populus Rhizosphere	MLRSLAVFSIVSALHFFLSVLGLLFVLPAAFDTQADAGFWAAPGKSLLAGMTAVLLAPLDFVPTRPGSGYLEIAAASALFGLGAVGLHFGWRKWRA*
Ga0075418_109112032	3300009100	Populus Rhizosphere	MLRSLAVFSIVSALHFVLSVLGLLFVLPAAFETQGGAGFWAAPGKSLLAGMAGALLAPLNLFPARAGFGFLEIAAVSVMFGMVALGLDALWRRLRRRPAQ*
Ga0075418_110132442	3300009100	Populus Rhizosphere	VFSIVSALHFVLSVLGLLFVLPAAFETQGGAGFWAAPGKSLLAGMAGVLLAPLNLFPARTGFGYPEIAAVSALFGLAAVALVLGWRKWRT*
Ga0111538_100994192	3300009156	Populus Rhizosphere	MLRSLAVFSIVSALHFFLSVLGLLFVLPAAFETQGGAGFWAAPGKSLLAGMTTVLLAPLNLIPARAGFGYLEIAAVSALFGLAAASVHGLWRRITRPGAESVLPKSRPNDRVR*
Ga0111538_110523262	3300009156	Populus Rhizosphere	MLRSLAAFSIVGALHFFLSVLGLLFVLPAAFETQGGAGFWAAPGKSLLAGMAGILLSPLAFFPANTNFNYLEIIAVSAMFDCAATGLDYLWRLLRARRPAQ*
Ga0075423_118483212	3300009162	Populus Rhizosphere	SIVSALHYFLSVLGLLFVLPAAFDTQADAGFWAAPGKSLLAGMTAVLLAPLDFVPTRPGSGYLEIAAASALFGLGAVGLHFGWRKWRA*
Ga0137326_11489852	3300011417	Soil	MLRSLTVFSIVSTLHFLLSVLGLAFILPAAFETQGGAGFWAAPGKSMLVWMSNVLLVPLWFFPPADFGFRHVAAVSVIFGLVAAGLFHFWRKWRA*
Ga0137436_10198952	3300011423	Soil	MLRSAAVFSIVSALHFFLSVLGLLFVLPAAFETQGGAGFWAAPGKSLLAGMTAVLLAPLSFIPAGAGSGYLEIAAVSALFGLGAAGLHFGWRQWRT*
Ga0137322_10062332	3300012146	Soil	MLRSLAVFSIVSTLHFFLSVLGLLFILPAAFETQGGAGFWAAPGKSLLAGMAAVLLAPLALFPAGAGLSYLEIVAVSAMFGLAAVGIFHLWRKWRT*
Ga0157380_123134242	3300014326	Switchgrass Rhizosphere	MLRSLAVFSIVGALHFFLSVLGLLFVLPAAFETQGGSGFWAAPGKSLLAGMATVLLAPLGFIPAGPGFGFLEIAAVSALFGVAALGVDHLWRLLRRRSAP*
Ga0157377_101780492	3300014745	Miscanthus Rhizosphere	MLRSLAVFSIVGALHFFLSVLGLLFVLPAAFETQGGSGFWAAPGKSPLAGMATVLLAPLAFIPAGPGFGFLEIAAVSALFGVAAIGLDHLWRLLRRR*
Ga0173480_106645132	3300015200	Soil	MLRSLAVFSIVSALHFFLSVLGLLFVLPAAFETQGGAGFWAAPGKSLLAGMTTVLLAPLNLIPARAGFGYLEIAAVSALFGLAAAGAHGLWRRITRPGAESVLPKSRPNDRVR*
Ga0173480_109481751	3300015200	Soil	RMLRSLAVFSIVGALHFFLSVLGLLFVLPAAFETQGGSGFWAAPGKSLLAGMATVLLAPLGFIPAGPGFGFLEIAAVSAMFGLGAVGLYQLWGMVRRRTAP*
Ga0190265_100449882	3300018422	Soil	MLRSLAVFAIVSALHFFLSVLGLAFVLPAAFETQGGAGFWAAPGKSMLVWMSNVLLAPLWFFPTGTDFGFLHVAAVSVLFGVVAAGLYRVWRAARR
Ga0190265_135497102	3300018422	Soil	MLRSLVVFAIVSTLHFFLSVLGLAFILPAAFETQGGAGFWAAPGKSMLVWMSNALLAPLWFFPTGTDFGFLHIAAVSVLFGLAAAGLFHLRRKRRT
Ga0190272_104977352	3300018429	Soil	MLRALTVFSIVSTLHFLLSLLSLAFILPAAFETQGGAGFWAAPGKSMLAWMSNVLLAPLWFFPTPADFGFRHVAAVSVLYGLVAAAVFHLWRRRRT
Ga0190275_104495912	3300018432	Soil	MLRALTVFSIVSTLHFLLSVLGLAFVLPAAFETQGGAGFWAAPGKSMLAWMPNVLLAPLWFFPPPADFGFRHVAALSVLYGLAAAGLVHAWRKWRT
Ga0190275_119920451	3300018432	Soil	MLRSLTVFAIVSTLHFFLSVLGLAFALPAAFETQGGAGFWAAPGKSMLVWMSNVLLAPLWFFPTGTEFGFLHVAAVSVLFALAAA
Ga0190270_112109072	3300018469	Soil	MVFSIVSALHFFLSVLGLLFVLPAAFETQGGSGFWAAPGKSLIVAMTSVLLAPLALIPAGLGFGFGEIALVSAMFGVAAVGLHYFWRTLRGRR
Ga0190270_125161462	3300018469	Soil	MLRALVVFSIVSTLHFLLSVLGLAFILPAAFETQGGAGFWAAPGKSMLAWMANVLLAPLWFFPTRTNFGFLHVAAVSVLFGLAAAGLVQAWRKWRT
Ga0190274_100468552	3300018476	Soil	MLRSLTVFSIASALHFFLSVLGLAFVLPAAFETQGGSGFWAAPGKSLLAGMTGVLLAPLALIPAGPGFGHLEIVAVSAMFGAVAAGLDYAWRRIRASAQ
Ga0190271_102294892	3300018481	Soil	MLRSLTVFSIAGTLHFLLSVLGLAFILPAAFETQGGAGFWAAPGKSMLVWMSNVLLAPLWLLPTGTDFGFRHVAAVSVLFGLAAAGLFHLRRKRRI
Ga0190264_102407631	3300019377	Soil	MLRALVVFSIVSTLHFLLSVLGIAFILPAAFETQGGAGFWAAPGKSMLVWMSNVLLVPLWFFPPADFGFRHVAAVSVMFGLAAAGLHYWWRARRARRRA
Ga0190264_120060642	3300019377	Soil	VSTLHFLLSVLGLAFVLPAAFETQGGAGFWAAPGKSMLAWMSNVLLAPLWFFPTPADFGFRHVAALSVLYGLAAAGLVHAWRKWRT
Ga0193741_10469962	3300019884	Soil	MLRALVVFSIVSTLHFLLSVLGIAFILPAAFETQGGAGFWAAPGTSMLAWMSNVLLAPLWFFPTPADFGFRHVAAVSVLFGLAAVGLFHLWRKWRT
Ga0193740_10121022	3300020009	Soil	MLRALAVFSIVSTLHFLLSVLGIASILPAAFETQGGAGFWAAPGKSMLVWMSNVLLVPLWFFPPADFGFRHVAAVSVLFGLAAVGLFHLWRKWRT
Ga0213898_1004032	3300021260	Soil	MLRSLTVFSIAGTLHFLLSVLGLAFILPAAFETQGGAGFWAAPGKSMLVWMSNVLLAPLWLLPTGTDFGFRHVAAVSVLFGLAAAGLFHLRRI
Ga0213895_1018352	3300021264	Soil	MLRSLTVFSIAGTLHFLLSVLGLAFILPAAFETQGGAGFWAAPGKSMLVWMSNVLLAPLWLLPTGTDFGFRHVAAVSVLFGLAAAGLFHL
Ga0213899_1008262	3300021272	Soil	MLRSLTVFSIAGTLHFLLSVLGLAFILPAAFETQGGAGFWAAPGKSMLVWMSNVLLAPLWFLPTGTDFGFRHVAAVSVLFGLAAAGLFHLWRKPRI
Ga0213900_1004232	3300021280	Soil	MLRSLTVFSIAGTLHFLLSVLGLAFILPAAFETQGGAGFWAAPGKSMLVWMSNVLLAPLWFLPTGTDFGFRHVAAVSVLFGLAAAGLFHLRRKRRI
Ga0207643_100163642	3300025908	Miscanthus Rhizosphere	MLRSLAVFSIVGALHFFLSVLGLLFVLPAAFETQGGSGFWAAPGKSLLAGMATVLLAPLAFIPAGPGFGFLEIAAVSALFGVAAIGLDHLWRLLRRR
Ga0207650_108464991	3300025925	Switchgrass Rhizosphere	MLRSLAVFSIVGALHFFLSVLGLLFVLPAAFETQGGSGFWAAPGKSLLAGMATVLLAPLGFIPAGPGFGFLEIAAVSAMFGLGA
Ga0207670_106368172	3300025936	Switchgrass Rhizosphere	MLRSLAVFSIVGALHFFLSVLGLLFVLPAAFETQGGSGFWAAPGKSLLAGMATVLLAPLAFIPAGPGFGFFEIAAVSALFGVAALGLDHLWRLLRRRLE
Ga0207689_101194112	3300025942	Miscanthus Rhizosphere	MLRSLAVFSIVGALHFFLSVLGLLFVLPAAFETQGGSGFWAAPGKSLLAGMATVLLAPLAFIPAGPGFGFLEIAAVSALFGVAALGVDHL
Ga0207651_101523302	3300025960	Switchgrass Rhizosphere	MLRSLAVFSIVGALHFFLSVLGLLFVLPVAFETQGGSGFWAAPGKSLLAGMATVLLAPLAFIPAGPGFGFLEIAAVSALFGVAAIGLDHLWRLLRRR
Ga0207683_104702882	3300026121	Miscanthus Rhizosphere	MLRSLAVFSIVGALHFFLSVLGLLFVLPAAFETQGGSGFWAAPGKSLLAGMATVLLAPLAFIPAGPGFGFLEIAAVSALFGVAALGLDRLWRLLRRRLE
Ga0209818_11520022	3300027637	Agricultural Soil	MLRSLAVFAIVSTLHFFLSVLGLAFILPAAFETQGGAGFWAAPGKSMLVWMANVLLAPLWLLPARAAFGFLHVAAVSVLFGLAAVGLFHLWRKRRT
Ga0209481_100857352	3300027880	Populus Rhizosphere	MLRSLAVFSIVSALHFVLSVLGLLFVLPAAFETQGGAGFWAAPGKSLLAGMAGVLLAPLNLFPARTGFGYPEIAAVSALFGLAAVALVLGWRKWRT
Ga0209486_100152232	3300027886	Agricultural Soil	MLRSLTVFSIAGTLHFLLSVLGLAFILPAAFETQGGAGFWAAPGKSMLVWMSNVLLAPLWFLPTATDFGFRHVAAVSVIFGLVAAGLFHFWRKRRV
Ga0209486_101596861	3300027886	Agricultural Soil	MLRSLAVFAIVSTLHFFLSVFGLAFVLPAAFETQGGAGFWAAPGKSMLVWMSNVLLAPLWFFPTGTEFGFLHIAAVSLLFGLAVAGLFHRWRKRRT
Ga0207428_102094732	3300027907	Populus Rhizosphere	MLRSLAVFSIVSALHFFLSVLGLLFVLPAAFETQGGAGFWAAPGKSLLAGMTTVLLAPLNLIPARAGFGYLEIAAASALFGLAAAGVHGLWRRITRPGAESVLPKSRPNDRVR
Ga0268265_102519753	3300028380	Switchgrass Rhizosphere	MLRSLAVFSIVSALHFFLSVLGLLFVLPAAFETQGGAGFWAAPGKSLLAGMTTVLLAPLNLIPARAGFGYLEIAAVSALFGLAAAGVHGLWRRITRPGAESVLPKSRPNDRVR
Ga0247824_101501082	3300028809	Soil	MLRSLTVFSIVGTLHFLLSVLGLAFILPAAFETQGGAGFWAAPGKSMLVWMSNVLLAPLWFFPTGTDFGFRHVAAVSVLFGLAAAGLFHLWRKPRI
Ga0247825_105685571	3300028812	Soil	MLRSLTVFSIVGTLHFLLSVLGLAFILPAAFETQGGAGFWAAPGKSMLVWMSNVLLAPLWFLPTGTDFGFRHVAAVSVLFGLAAAGLFHLRRKRRI
Ga0310887_100538473	3300031547	Soil	MLRSLAVFSIVSALHFFLSVLGLLFVLPAAFETQGGAGFWAAPGKSLLAGMTTVLLAPLNFIPARAGFGYLEIAAVSALFGLAAAGVHGLWRRITRPGAESVLPKSRPNDRVR
Ga0307408_1001933732	3300031548	Rhizosphere	MLRSLTVFSIAGTLHFLLSVLGLAFILPAAFETQGGAGFWAAPGKSMLVWMSDVLLAPLWFLPTGTDFGFRHVAAVSVLFGLAAAG
Ga0307408_1011028092	3300031548	Rhizosphere	MLRSSAVFAIVSALHFFLSVLGLAFVLPAAFETQGGAGFWAAPGKSMLVWMSNALLAPLWFFPTGTDFGFLHVAGVSALFGLAAAGLFQRWRTRRT
Ga0307408_1016992952	3300031548	Rhizosphere	MLRSAAVFAIVSTLHFFLSVLGLAFVLPAAFETQGGAGFWAAPGKSMLVWMSNLLLAPLWFFPTGSDFGFLQVAAVSVLFGLAAAGLFHLRRKRRT
Ga0307405_103836152	3300031731	Rhizosphere	MLRSLTVFSIAGTLHFLLSVLGLAFILPAAFETQGGAGFWAAPGKSMLVWMSNVLLAPLWFLPTGTDFGFRHVAAVSVLFGLAAAGLFHLWRKRRI
Ga0307410_110301712	3300031852	Rhizosphere	MLRSAAVFAIVSTLHFFLSVLGLAFVLPAAFETQGGAGFWAAPGKSMLVWMSNVLLAPLWFLPTGTDFGIRHIAAVSVLFGLAAAGLFHLWRKRRV
Ga0310900_101031142	3300031908	Soil	MLRSLAVFSIVSALHFFLSVLGLLFVLPAAFETQGGAGFWAAPGKSLLAGMTTVLLAPLNLIPARAGFGYLEIAAVSALFGLAAAGVHGLWRRIT
Ga0307412_112074752	3300031911	Rhizosphere	MLRSLTVFSIAGTLHFLLSVLGLAFILPAAFETQGGAGFWAAPGKSMLVWMSNLLLAPLWFLPTGTDFGFRHVAAVSVLFGLAAAGLFHLWRKRRI
Ga0310884_107630742	3300031944	Soil	MLRSLAVFSIVGALHFFLSVLGLLFVLPAAFETQGGSGFWAAPGKSLLAGMATVLLAPLAFIPAGPGFGFLEIAAVSALFGVAALGVDHLWRLLR
Ga0307416_1007464932	3300032002	Rhizosphere	MLRSSAVFAIVSALHFFLSVLGLAFVLPAAFETQGGAGFWAAPGKSMLAWMSNALLAPLWFFPTGTDFGFLHVAGVSALFGLAAAGLFQRWRARRT
Ga0307411_105038622	3300032005	Rhizosphere	MLRSSAVFAIVSALHFFLSVLGLAFVLPAAFETQGGAGFWAAPGKSMLVWMSNALLAPLWLFPTGTDFGFLHVAGVSALFGLAAAGLFQRWRTRRT
Ga0307411_111765431	3300032005	Rhizosphere	MLRSLAVFAIVSTLHFFLSVLGLAFVLPAAFETQGGAGFWAAPGKSMLAWMANVLLAPLWFLPAGAGFGFLHVAAVSVLFGLAAAGLSHLWRKRRT
Ga0307411_119254471	3300032005	Rhizosphere	MLRALTVFSIVITLHFLLSVLGLAFILPAAFETQGGAGFWAAPGKSMLVWMSNVLLAPLWFLPTGTDFGFRHVAAVSVLFGLAAAGLFHLWRKRRI
Ga0310902_105795781	3300032012	Soil	MLRSLAVFSIVSALHFFLSVLGLLFVLPAAFETQGGAGFWAAPGKSLLAGMTTVLLAPLNLIPARAGFGYLEIAAVSALFGLAAAGAHGLWRRITRPGAESVLPKSRPNDRVR
Ga0310906_101087341	3300032013	Soil	MLRSLAVFSIVSALHFFLSVLGLLFVLPAAFETQGGAGFWAAPGKSLLAGMTTVLLAPLNLIPARAGFGYLEIAAVSALFGLAAAGV
Ga0315912_108257302	3300032157	Soil	MLRSLTVFSIAGTLHFLLSVLGLAFILPAAFETQGGAGFWAAPGKSMLAWIPSVLLAPLWVFPTPADFGFRHVAAVSVLFGVAAVGLFHLWRRRRN
Ga0310889_106685292	3300032179	Soil	MLRSLAVFSIVGALHFFLSVLGLLFVLPAAFETQGGSGFWAAPGKSLLAGMATVLLAPLAFIPAGPGFGFLEIAAVSALFGVAA
Ga0247829_100246602	3300033550	Soil	MLRSLTVFSIAGTLHFLLSVLGLAFILPAAFETQGGAGFWAAPGKSMLVWMSNVLLVPLWFFPPADFGFRHVAAVSVLFGLAAAGLFHLWRKRRV
Ga0247829_117064872	3300033550	Soil	MLRSLTVFSIVGTLHFLLSVLGLAFILPAAFETQGGGGFWAAPGKSMLVWMSNVLLAPLWFLPTGTDFGFRHVAAVSVLFGLAAAGLFHLRRKRRI
Ga0247830_111887732	3300033551	Soil	MLRSLTVFSIVGTLHFLLSVLGLAFILPAAFETQGGGGFWAAPGKSMLVWMSNVLLAPLWFLPTGTDFGFRHVAAVSVLFGLAAAGLFHLRRKRRN

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F103522

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences