Metagenome Family F103520

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F103520
Family Type	Metagenome
Number of Sequences	101
Average Sequence Length	64 residues
Representative Sequence	QGPLKFPPLLDVSVKPRRSVDDIVGLLKDPPAYGLQPPMRSFSDKLTEEQMREIAEWIVKLKK
Number of Associated Samples	78
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	0.00 %
% of genes from short scaffolds (< 2000 bps)	96.04 %
Associated GOLD sequencing projects	71
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.64

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (95.050 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere (9.901 % of family members)
Environment Ontology (ENVO)	Unclassified (54.455 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (68.317 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 28.57% β-sheet: 0.00% Coil/Unstructured: 71.43%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.64
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.64
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF13442	Cytochrome_CBB3	63.37
PF00491	Arginase	3.96
PF03023	MurJ	0.99
PF00285	Citrate_synt	0.99
PF00034	Cytochrom_C	0.99
PF09674	DUF2400	0.99
PF07676	PD40	0.99
PF13801	Metal_resist	0.99
PF02537	CRCB	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG0010	Arginase/agmatinase family enzyme	Amino acid transport and metabolism [E]	3.96
COG0239	Fluoride ion exporter CrcB/FEX, affects chromosome condensation	Cell cycle control, cell division, chromosome partitioning [D]	0.99
COG0372	Citrate synthase	Energy production and conversion [C]	0.99
COG0534	Na+-driven multidrug efflux pump, DinF/NorM/MATE family	Defense mechanisms [V]	0.99
COG0728	Lipid II flippase MurJ/MviN (peptidoglycan biosynthesis)	Cell wall/membrane/envelope biogenesis [M]	0.99
COG2244	Membrane protein involved in the export of O-antigen and teichoic acid	Cell wall/membrane/envelope biogenesis [M]	0.99

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	95.05 %
Unclassified	root	N/A	4.95 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	95.05 %
Unclassified	root	N/A	4.95 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	95.05 %
Unclassified	root	N/A	4.95 %

Name	Rank	Taxonomy	Distribution
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → environmental samples	37.62 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	26.73 %
Unclassified	root	N/A	4.95 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	37.62 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	13.86 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	6.93 %
Unclassified	root	N/A	4.95 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	37.62 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	13.86 %
unclassified Blastocatellia	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia	6.93 %
Unclassified	root	N/A	4.95 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	37.62 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	13.86 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	6.93 %
Unclassified	root	N/A	4.95 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.99 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000531\|CNBas_1002435	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1026	Open in IMG/M
3300004157\|Ga0062590_100975052	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	803	Open in IMG/M
3300004480\|Ga0062592_102122330	All Organisms → cellular organisms → Bacteria	558	Open in IMG/M
3300005290\|Ga0065712_10412580	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	720	Open in IMG/M
3300005295\|Ga0065707_10864759	All Organisms → cellular organisms → Bacteria	578	Open in IMG/M
3300005331\|Ga0070670_100384668	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1237	Open in IMG/M
3300005331\|Ga0070670_101191558	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	696	Open in IMG/M
3300005333\|Ga0070677_10922288	All Organisms → cellular organisms → Bacteria	506	Open in IMG/M
3300005334\|Ga0068869_101342343	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	632	Open in IMG/M
3300005338\|Ga0068868_101293341	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	677	Open in IMG/M
3300005341\|Ga0070691_10751168	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	590	Open in IMG/M
3300005364\|Ga0070673_102227004	All Organisms → cellular organisms → Bacteria	521	Open in IMG/M
3300005364\|Ga0070673_102349720	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	507	Open in IMG/M
3300005366\|Ga0070659_100264520	All Organisms → cellular organisms → Bacteria → Proteobacteria	1427	Open in IMG/M
3300005406\|Ga0070703_10381076	All Organisms → cellular organisms → Bacteria	609	Open in IMG/M
3300005438\|Ga0070701_10531245	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	769	Open in IMG/M
3300005444\|Ga0070694_101337201	Not Available	603	Open in IMG/M
3300005466\|Ga0070685_11279299	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	560	Open in IMG/M
3300005536\|Ga0070697_100893629	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	788	Open in IMG/M
3300005544\|Ga0070686_101919933	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	506	Open in IMG/M
3300005545\|Ga0070695_100599586	All Organisms → cellular organisms → Bacteria → Acidobacteria	864	Open in IMG/M
3300005545\|Ga0070695_100873760	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	725	Open in IMG/M
3300005545\|Ga0070695_101547526	All Organisms → cellular organisms → Bacteria	553	Open in IMG/M
3300005549\|Ga0070704_100962319	All Organisms → cellular organisms → Bacteria	770	Open in IMG/M
3300005577\|Ga0068857_100490032	All Organisms → cellular organisms → Bacteria	1152	Open in IMG/M
3300005577\|Ga0068857_101935112	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	578	Open in IMG/M
3300005578\|Ga0068854_100285332	All Organisms → cellular organisms → Bacteria	1331	Open in IMG/M
3300005618\|Ga0068864_102707357	All Organisms → cellular organisms → Bacteria	502	Open in IMG/M
3300005841\|Ga0068863_100313731	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1522	Open in IMG/M
3300005843\|Ga0068860_100391265	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1374	Open in IMG/M
3300005843\|Ga0068860_100931336	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	885	Open in IMG/M
3300005883\|Ga0075299_1000854	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1485	Open in IMG/M
3300005887\|Ga0075292_1012002	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1092	Open in IMG/M
3300005937\|Ga0081455_10625631	All Organisms → cellular organisms → Bacteria	697	Open in IMG/M
3300006196\|Ga0075422_10595545	All Organisms → cellular organisms → Bacteria	511	Open in IMG/M
3300006358\|Ga0068871_102364470	All Organisms → cellular organisms → Bacteria	507	Open in IMG/M
3300006755\|Ga0079222_10379365	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	972	Open in IMG/M
3300006755\|Ga0079222_12538604	All Organisms → cellular organisms → Bacteria	515	Open in IMG/M
3300006852\|Ga0075433_10820150	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	812	Open in IMG/M
3300006852\|Ga0075433_11109478	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	688	Open in IMG/M
3300006852\|Ga0075433_11606552	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	561	Open in IMG/M
3300009098\|Ga0105245_12039280	All Organisms → cellular organisms → Bacteria → Acidobacteria	627	Open in IMG/M
3300009156\|Ga0111538_11111871	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	999	Open in IMG/M
3300009174\|Ga0105241_11123980	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	741	Open in IMG/M
3300009174\|Ga0105241_11941103	All Organisms → cellular organisms → Bacteria	578	Open in IMG/M
3300009176\|Ga0105242_10164477	All Organisms → cellular organisms → Bacteria	1945	Open in IMG/M
3300009177\|Ga0105248_11307359	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	820	Open in IMG/M
3300009553\|Ga0105249_10293880	All Organisms → cellular organisms → Bacteria	1627	Open in IMG/M
3300009553\|Ga0105249_11667237	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	710	Open in IMG/M
3300010037\|Ga0126304_10488090	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	827	Open in IMG/M
3300010042\|Ga0126314_10794471	All Organisms → cellular organisms → Bacteria → Acidobacteria	696	Open in IMG/M
3300010042\|Ga0126314_10829950	All Organisms → cellular organisms → Bacteria → Acidobacteria	681	Open in IMG/M
3300010045\|Ga0126311_10006824	All Organisms → cellular organisms → Bacteria	6159	Open in IMG/M
3300010047\|Ga0126382_12262082	Not Available	524	Open in IMG/M
3300010360\|Ga0126372_10730732	All Organisms → cellular organisms → Bacteria → Acidobacteria	971	Open in IMG/M
3300010373\|Ga0134128_12357868	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	586	Open in IMG/M
3300010397\|Ga0134124_10930561	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	877	Open in IMG/M
3300010397\|Ga0134124_11287114	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	754	Open in IMG/M
3300010397\|Ga0134124_12702561	All Organisms → cellular organisms → Bacteria	540	Open in IMG/M
3300010400\|Ga0134122_10799378	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	900	Open in IMG/M
3300010403\|Ga0134123_13638282	Not Available	500	Open in IMG/M
3300011119\|Ga0105246_10172784	All Organisms → cellular organisms → Bacteria	1657	Open in IMG/M
3300011431\|Ga0137438_1082735	All Organisms → cellular organisms → Bacteria	970	Open in IMG/M
3300012015\|Ga0120187_1050570	All Organisms → cellular organisms → Bacteria	552	Open in IMG/M
3300012957\|Ga0164303_11286775	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	540	Open in IMG/M
3300012961\|Ga0164302_10577129	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	810	Open in IMG/M
3300012986\|Ga0164304_11548280	All Organisms → cellular organisms → Bacteria	550	Open in IMG/M
3300013100\|Ga0157373_10573773	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	820	Open in IMG/M
3300013100\|Ga0157373_11185508	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	575	Open in IMG/M
3300013297\|Ga0157378_12043048	All Organisms → cellular organisms → Bacteria → Acidobacteria	623	Open in IMG/M
3300013306\|Ga0163162_11277580	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	834	Open in IMG/M
3300013307\|Ga0157372_11874021	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	689	Open in IMG/M
3300013308\|Ga0157375_11620707	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	765	Open in IMG/M
3300015374\|Ga0132255_102362556	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	811	Open in IMG/M
3300025900\|Ga0207710_10172323	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1058	Open in IMG/M
3300025900\|Ga0207710_10481184	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	643	Open in IMG/M
3300025901\|Ga0207688_10524748	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	743	Open in IMG/M
3300025901\|Ga0207688_10872100	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	570	Open in IMG/M
3300025926\|Ga0207659_10786974	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	817	Open in IMG/M
3300025932\|Ga0207690_10469988	All Organisms → cellular organisms → Bacteria	1013	Open in IMG/M
3300025933\|Ga0207706_10947143	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	725	Open in IMG/M
3300025942\|Ga0207689_11129043	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	660	Open in IMG/M
3300026020\|Ga0208531_1009651	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	841	Open in IMG/M
3300026088\|Ga0207641_11592029	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	655	Open in IMG/M
3300026116\|Ga0207674_10063913	All Organisms → cellular organisms → Bacteria	3713	Open in IMG/M
3300026116\|Ga0207674_11079489	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	772	Open in IMG/M
3300026116\|Ga0207674_11460772	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	653	Open in IMG/M
3300026118\|Ga0207675_100277335	All Organisms → cellular organisms → Bacteria	1628	Open in IMG/M
3300026118\|Ga0207675_101840557	Not Available	624	Open in IMG/M
3300026121\|Ga0207683_10952873	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	797	Open in IMG/M
3300027691\|Ga0209485_1348157	All Organisms → cellular organisms → Bacteria	501	Open in IMG/M
3300027775\|Ga0209177_10127551	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	839	Open in IMG/M
3300028381\|Ga0268264_11106171	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	801	Open in IMG/M
3300028381\|Ga0268264_11796363	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	623	Open in IMG/M
3300031548\|Ga0307408_100143610	All Organisms → cellular organisms → Bacteria	1876	Open in IMG/M
3300031824\|Ga0307413_10341262	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1152	Open in IMG/M
3300031824\|Ga0307413_11602282	All Organisms → cellular organisms → Bacteria	578	Open in IMG/M
3300031852\|Ga0307410_10048634	All Organisms → cellular organisms → Bacteria	2842	Open in IMG/M
3300031911\|Ga0307412_10806098	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	815	Open in IMG/M
3300032005\|Ga0307411_10722736	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	870	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	62.38%
Environmental	Environmental	37.62%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	62.38%
Terrestrial	Environmental → Terrestrial	36.63%
Aquatic	Environmental → Aquatic	0.99%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	36.63%
Rhizosphere	Host-Associated → Plants → Rhizosphere	34.65%
Rhizoplane	Host-Associated → Plants → Rhizoplane	26.73%
Sediment	Environmental → Aquatic → Sediment	0.99%
Roots	Host-Associated → Plants → Roots	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	25.74%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	22.77%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	22.77%
Loam	Environmental → Terrestrial → Soil → Loam	10.89%
Soil	Host-Associated → Plants → Rhizosphere → Soil	8.91%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.97%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.97%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.99%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.99%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	25.74%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	22.77%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	16.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	10.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	8.91%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	5.94%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.97%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.97%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.99%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.99%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.99%

Habitat	Taxonomy	Distribution
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	9.90%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	8.91%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	5.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	5.94%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	5.94%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.95%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	4.95%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	3.96%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	3.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	3.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.97%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	2.97%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.97%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.97%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.97%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.97%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.98%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.98%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.98%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.99%
Terrestrial	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial	0.99%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.99%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.99%
Quercus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Quercus Rhizosphere	0.99%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.99%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.99%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.99%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.99%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.99%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000531	Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - CNB_Illumina_Assembled	Host-Associated	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005290	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005333	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG	Host-Associated	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300005883	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_80N_302	Environmental	Open in IMG/M
3300005887	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_80N_403	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300011431	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT157_2	Environmental	Open in IMG/M
3300012015	Terrestrial microbial communites from a soil warming plot in Okalahoma, USA - C3.rep1	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026020	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_80N_403 (SPAdes)	Environmental	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027691	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100 (SPAdes)	Environmental	Open in IMG/M
3300027775	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)	Environmental	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300031911	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1	Host-Associated	Open in IMG/M
3300032005	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1	Host-Associated	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
CNBas_10024354	3300000531	Quercus Rhizosphere	RFPDLLFVWKKPQRTVDDIVGLLKNPEAFGLKPPMRSFSDKLTEEQMREIAEWIVKLKR*
Ga0062590_1009750521	3300004157	Soil	QQGPLKFPPLLDVSAKPRRSVDDIVSLLKDPTAYGLQPPMRSFSEKLTEEQMREIAEWIVKLKK*
Ga0062592_1021223301	3300004480	Soil	NFPPLLDVAAKPRRSVDDIVGLLKDPAAYGLQPPMRSFADKLTEPQMREIAEWIVKLKK*
Ga0065712_104125802	3300005290	Miscanthus Rhizosphere	CHGPNGEGARQGRLNFPPLLDVSAKPRRTVDDIVGLLKDPPAYGLQPPMRSFRDKLSDEQMKEIGEWIVKLKR*
Ga0065707_108647591	3300005295	Switchgrass Rhizosphere	GVAAKPRRTVNDIVGLLKDPSAYGLQPPMRSFSDKLTEDQMREIAQWIVQLKM*
Ga0070670_1003846681	3300005331	Switchgrass Rhizosphere	PFRFPPLRNLSAKPRRTADDIVALLKDPRAYDLQPPMTSFSGKMTEDHMRQIAEWLLQLK
Ga0070670_1011915582	3300005331	Switchgrass Rhizosphere	PLLDVSTKPRRTADDIASLLKDPTAYGLQPPMRSFRDKLTDEQMKEIGEWIVKLKR*
Ga0070677_109222881	3300005333	Miscanthus Rhizosphere	GTHGQGAQQGPLKFPPLLDVSAKPRRSVDDIVGLLKDPTAYGLQPPMRSFSEKLTEEQMREIAEWIVKLKK*
Ga0068869_1013423432	3300005334	Miscanthus Rhizosphere	HGQGAQQGPLKFPPLLDVSAKPRRNVDDIVSLLKDPTAYGLQPPMRSFAEKLTEEQMREIAEWIVKLKK*
Ga0068868_1012933411	3300005338	Miscanthus Rhizosphere	FPPLLDVSTKPRRTVDDIVGLLKDPPAYGLQPPMRSFSNKLTEQQMREIGEWIVKLKR*
Ga0070691_107511682	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	GKLNFPSLLDVSTKPRRTADDIVSLLKDPTAYGLQPPMRSFRDKLTDEQMKEIGEWIVKLKR*
Ga0070673_1022270041	3300005364	Switchgrass Rhizosphere	GQGAQQGPLKFPPLLDVPSKPRRSVDDIVALLKDPTTYGLQPPMRSFSGKLTEEQMREIAEWIVKLKK*
Ga0070673_1023497202	3300005364	Switchgrass Rhizosphere	PLLDVSAKPRRSVDDLVSLLKDPTAYGLQPPMRSFSEKLTEEQMREIAEWIVKLKR*
Ga0070659_1002645201	3300005366	Corn Rhizosphere	STKPRRTADDIVALLKDPGAYGLQPPMTSFAGKLPDEELVTIADWLVKLKR*
Ga0070703_103810762	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	GPHGEGVRRGNLSFPSLLGVAAKPQRTVDDIVGLLKDPPTYGLQPPMRSFNDKLNEAQMREIAQWIVQLKK*
Ga0070701_105312451	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	LLDVAAKPRRTVNDIVEILKDPPAYGLSPPMRSFSDKLNDEQMKEIGEWIVKLKR*
Ga0070694_1013372012	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	QGPFRFPPLRNLSAKPRRTADDIVALLKDPRAYDLQPPMTSFSGKMTEDHMRQIAEWLLQLK*
Ga0070685_112792991	3300005466	Switchgrass Rhizosphere	GQGAQQGPLKFPPLLDVSAKPRRSVDDIVALLKDPTAYGLQPPMRSFADKLREEQMREIAEWIVKLRQD*
Ga0070697_1008936291	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	RGTLKFPPLLDVGAKPRRAPEDIVGLLKDPPAYGLQPPMRSFADKLTDEQMREIAAWVVKLKR*
Ga0070686_1019199331	3300005544	Switchgrass Rhizosphere	GPLKFPPLLDVSSKQRRSVDDIVNLLKDPTAYGLQPPMRSFSTKLNDEQMREIAEWIVKLKK*
Ga0070695_1005995861	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	GEGARQGRLNFPPLIGVAAKPRRTVDDIVGLLKDPTAYGLQPPMRSFSNKLTEPQMRIVAEWIVKLQK*
Ga0070695_1008737601	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	GVATKPRRTVDDLTGLLKDPQAYGLQPPMRSFADKLTEPQMREIAEWVHRLR*
Ga0070695_1015475261	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	TRGSLRFPPLIGISSKPRRTVEDIVALLNDPVAYGLEPPMRSFANKLTEDQKQEIAEWIVKLK*
Ga0070704_1009623191	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	PLLDVSAKPRRTVDDIVGLLKDPTAYGLEAPMRSFSTKLTEPQMREIAEWIVKLKR*
Ga0068857_1004900321	3300005577	Corn Rhizosphere	GEGARQGKLNFPPLLDVSAKPRRTVDDIVGLLKDPTAYGLEPPMRSFSNKLTEPQMREIAEWIVKLKR*
Ga0068857_1019351121	3300005577	Corn Rhizosphere	QLNFPPLLDVSTKPRRTVDDIVSLLKDPPAYGLQPPMRSFSNKLTDEQMREIGEWIVKLKR*
Ga0068854_1002853321	3300005578	Corn Rhizosphere	RLTGVGAKPQRNVDDIVGLLKNPEAYGLQPPMRSFSEKLTEPQMREIAEWVHRLR*
Ga0068864_1020415601	3300005618	Switchgrass Rhizosphere	VSAKPRRSVDDIVSLLKDPAAYGLQPPMRSFSEKLTEEQMREIAEWIVKLKK*
Ga0068864_1027073572	3300005618	Switchgrass Rhizosphere	PNGEGARQGRLNFPPLLDVSAKPRRTVDDIVGLLKDPPAYGLQPPMRSFRDKLSDEQMKEIGEWIVKLKR*
Ga0068863_1003137315	3300005841	Switchgrass Rhizosphere	GEGARQGRLTFPPLLGVAAKPKRSVDDIVGLLKDPAAYGLQPPMRSFSDKLTEDQMREIAQWIVQLKM*
Ga0068860_1003912654	3300005843	Switchgrass Rhizosphere	RLTFPPLLGVAAKPRRTTEDIVGLLKDPAAYGLQPPMRSFSDKLTEDQMREIAQWIVQLKM*
Ga0068860_1009313363	3300005843	Switchgrass Rhizosphere	HGPNGEGARQGRLNFPALLDVSTKPRRTVDDIVTLLKDPPAYGLQPPMRSFSNKLTEQQMREIGEWIVKLKR*
Ga0075299_10008541	3300005883	Rice Paddy Soil	PLLEVSAKPRRGVEDIVALLKDPPAYGLQPPMRSFSTKLTEEQMREIAEWIVKLRHD*
Ga0075292_10120021	3300005887	Rice Paddy Soil	TQGQGAQQGRLKFPPLLEVSAKPRRGVEDIVALLKDPPAYGLQPPMRSFSTKLTEEQMREIAEWIVKLRHD*
Ga0081455_106256312	3300005937	Tabebuia Heterophylla Rhizosphere	FPALLGVAAKPRRSVDDIVALLKDPTAYGLQPPMRSFSDKLNEPQMREIAEWIVKLKK*
Ga0075422_105955451	3300006196	Populus Rhizosphere	DVSTKPRRTVDDIVGLLKNPPGYGLQPPMRSFSDKLTDEQMKEIGEWIVKLKR*
Ga0068871_1023644702	3300006358	Miscanthus Rhizosphere	GPLKFPPLLDVSTKPRRSVDDIVGLLKDPPAYGLQPPMRSFSGKLSEDQMREIAEWIVKLKK*
Ga0079222_103793654	3300006755	Agricultural Soil	FPPLFDVRIKPRRKVEDIVGLLKDPPAYGLQPPMRSFADKLSEEQMREIAQWILSLKQ*
Ga0079222_125386042	3300006755	Agricultural Soil	SPAARVGGLSFPPLRGVAAKPRRSVDDIVGLLKNPPTYGLQAPMRSFSDKLTEPQMREIAEWIVKLTK*
Ga0075433_108201503	3300006852	Populus Rhizosphere	FPPLLDVSVKPRRTVDDIVALLKDPTAYNLQPPMRSFANKLTEPQMREIAEWIVKLKR*
Ga0075433_111094782	3300006852	Populus Rhizosphere	GGRQGRLTFPPLLGISAKPRRTVNDIVALLKDPQAYGLQLPMRSFSDKLTEEQMREIAEWIVKLEK*
Ga0075433_116065521	3300006852	Populus Rhizosphere	GRQGVFVFPPLLNVSAKPRRTVDDIVGLMKDPPAYGLQPPMRSFADKLSEPQMREIAEWIVKLKS*
Ga0105245_120392801	3300009098	Miscanthus Rhizosphere	QGPLKFPPLLNVSTKPRRSVDDIVRLLKDPTAYGLQPPMRSFSEKLTEEQMREIAEWIVKLRQD*
Ga0111538_111118714	3300009156	Populus Rhizosphere	LLDVAAKPRRSVDDIVSLLKDPAAYDLQPPMRSFRDKLTEPQMREIAEWIVKLKK*
Ga0105241_111239801	3300009174	Corn Rhizosphere	GLHGEGARVGTLNFPPLLGVAAKPRRSVDAIVGLLKDPAAYKLEPPMRSFSDKLTEPQMREIAEWIVKLQK*
Ga0105241_119411031	3300009174	Corn Rhizosphere	HGQGAQQGPLKFPPLLDVSAKPRRSVDDIVALLKDPTAYGLQPPMRSFSEKLREDQMREIAEWIVKLRQD*
Ga0105242_101644774	3300009176	Miscanthus Rhizosphere	PPLLDVSAKPRRSVDDIVALLKDPTAYGLQPPMRSFSDKLSEEQMREIAEWIVKLRHD*
Ga0105248_113073591	3300009177	Switchgrass Rhizosphere	LKFPPLLDVSAKPRRSVDDIVSLLKDPAAYGLQPPMRSFSDKLTEEQMREIAEWIVKLRQD*
Ga0105249_102938801	3300009553	Switchgrass Rhizosphere	LKFPPLLDVSAKPRRSVDDIVSLLKDPTAYGLQPPMRSFSEKLTEEQMREIAEWIVKLRK
Ga0105249_116672372	3300009553	Switchgrass Rhizosphere	GRLNFPPLQGVAAKPRRTVDDIVSLLKDPTAYDLQPPMRSFSDKLTEPQMREIAEWIVKLKK*
Ga0126304_104880901	3300010037	Serpentine Soil	EGARQGPLRFPPLLNVSAKPRRTADDIAALLKDPAAYDLKPPMTSFSGKLTDEQMREIAEWVVKLKT*
Ga0126314_107944712	3300010042	Serpentine Soil	LRFPPLLDVSAKPRRSVEDIVGLLKDPTAYGLEPPMRSFSNKLTEEQMREIAEWIVKLRQD*
Ga0126314_108299501	3300010042	Serpentine Soil	PLLDVAAKPRRSVDDIVGLLKDPTAYGLQPPMRSFSDKLTESQMREIAEWIVKLKR*
Ga0126311_100068241	3300010045	Serpentine Soil	PLRFPPLLDVAAKPRRSVEDIVGLLKDPAAYGLEPPMRSFSDKLSEEQMREIAEWIVKLKR*
Ga0126382_122620822	3300010047	Tropical Forest Soil	GPNGEGARQGRLNFPPLLDVSAKPRRTVNDIVEILKDPPAYGLSPPMRSFSDKLSDEQMKEIGEWIVRLKK*
Ga0126372_107307324	3300010360	Tropical Forest Soil	AQQGPLKFPPLLGVSSKPRRGVDDIMGLLKDPAAYGLQPPMRPFADKLTKDQMREIAEWIVKLKK*
Ga0134128_123578681	3300010373	Terrestrial Soil	QGPLKFPPLLDVSAKPRRSIDDIVGLLKDPTAYGLQPPMRSFATKLTEEQMREIAGWIVKLKR*
Ga0134124_109305613	3300010397	Terrestrial Soil	PHGEGARVGSLNFPPLLGVAAKPHRNVDDIVGLLKDPAAYKLEPPMRSFSDKLTEPQMREIAEWIVKLQK*
Ga0134124_112871143	3300010397	Terrestrial Soil	DVSAKPRRSVDDIVALLKDPTAYGLQPPMRSFSTKLSEEQMRDIAGWIVKLKR*
Ga0134124_127025612	3300010397	Terrestrial Soil	QGTLNFPPLLDVAAKPRRSIDDIVGLLKDPPAYGLQPPMRSFSDKLTEPQMREIAEWIVKLKK*
Ga0134122_107993781	3300010400	Terrestrial Soil	QGRLNFPPLLDVSAKPRRTVDDIASLLRDPAAYGLQPPMRSFKDKLTDEQMKEIGEWIVKLKR*
Ga0134123_136382821	3300010403	Terrestrial Soil	ARQGKLNFPPLLNVSTKPRRSVNDIVELLKDPPAYGLSPPMRSFRDKLTDEQMKEIGEWIVKLKR*
Ga0105246_101727844	3300011119	Miscanthus Rhizosphere	LNFPPLLDVSTKPRRTVDDIVGLLKDPPAYGLQPPMRSFSNKLTEQQMREISEWIVKLKR
Ga0137438_10827351	3300011431	Soil	LKFPPLLGVSEKPRRSVDDIIGILNDPKPYGLEPPMKSFATKLTDEEKREIANWIVTLKKTQ*
Ga0120187_10505701	3300012015	Terrestrial	VPTKPRRTVDDIIGLLKDPTVFGLQPPMKSFSTKLTEQQMREIAEWIVKLKR*
Ga0164303_112867751	3300012957	Soil	QGAQQVPRKFPPLLDVPAKPRRSVDDIVALLKDPTAYGLQPPMRSFSGKLTEEQMREIAEWIVKLKR*
Ga0164302_105771293	3300012961	Soil	SFPSLLGVAAKPQRTVDDIVGLLKDPPTFGLQPPMRSFNDKLSEAQMREIAQWIVQLKK*
Ga0164304_115482802	3300012986	Soil	QQGPLKFPPLLDVSSKPRRGVNDIMGLLKDPAAYGLQPPMRPFADKLTKDQMQEIAEWIVKLKK*
Ga0157373_105737732	3300013100	Corn Rhizosphere	HGRNGEGAQQGQVHFPRLTGVGAKPQRNVDDIVGLLKNPEAYGLQPPMRSFSEKLTEPQMREIAEWVHRLR*
Ga0157373_111855081	3300013100	Corn Rhizosphere	PHGEGAQQGTLRFPPLLDVAAKPRRTTEDIVGLLKDPTAYGLQPPMRSFNDKLSEGQMREIAAWIVQLKRVQP*
Ga0157378_120430481	3300013297	Miscanthus Rhizosphere	QGPLKFPPLLDVSVKPRRSVDDIVGLLKDPPAYGLQPPMRSFSDKLTEEQMREIAEWIVKLKK*
Ga0163162_112775801	3300013306	Switchgrass Rhizosphere	EGGRQGPFRFPPLRNLSAKPRRTADDIVALLKDPRAYDLQPPMTSFSGKMTEDHMRQIAEWLLQLK*
Ga0157372_118740212	3300013307	Corn Rhizosphere	GARRNNLTFPPLRDVPAKPRRTVEDIVGLLKDPPAYGLQPPMRSFSDKLSEEQMRQIAQWIVTLKR*
Ga0157375_116207071	3300013308	Miscanthus Rhizosphere	GGHQGRLNFPPLLDVSTKPRRTVDDIVGLLKDPPAYGLEPPMRSFSNKLTEQQMREIGEWIVKLKR*
Ga0132255_1023625561	3300015374	Arabidopsis Rhizosphere	LDVAAKPRRTVNDIVEILKDPPSYGLSPPMRSFSDKLNDEQMKEIGEWIVKLKR*
Ga0207710_101723234	3300025900	Switchgrass Rhizosphere	CHGPHGEGARQGTLNFPPLLDVAAKPRRSVDDIVGLLKDPPAYGLQPPMRSFSDKLTEPQMREIAEWIVKLKK
Ga0207710_104811842	3300025900	Switchgrass Rhizosphere	QGAQQGPLKFPPLLDVSSKPRRSVDDIMGLLKDPAAYGLQPPMRSFADKLTQEQMREVAEWIVKLKK
Ga0207688_105247482	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	RNGEGAQQGQVHFPRLTGVGAKPQRNVDDIVGLLKNPEAYGLQPPMRSFSEKLTEPQMREIAEWVHRLR
Ga0207688_108721001	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	QGRLTFPPLLGVAAKPRRTVNDIVGLLKDPSAYGLQPPMRSFSDKLTEDQMREIAQWIVQLKM
Ga0207659_107869741	3300025926	Miscanthus Rhizosphere	QQGPLKFPPLLEVSAKPRRSVDDIVSLLKDPAAYGLQPPMRSFADKLTEEQMREIAEWIVKLRK
Ga0207690_104699883	3300025932	Corn Rhizosphere	SGVGGRQGPFRFPPLINVSTKPRRTADDIVALLKDPGAYGLQPPMTSFAGKLPDEELVTIADWLVKLKR
Ga0207706_109471432	3300025933	Corn Rhizosphere	GRNGEGAQQGQVHFPRLTGVGAKPQRNVDDIVGLLKNPEAYGLQPPMRSFSEKLTEPQMREIAEWVHRLR
Ga0207689_111290431	3300025942	Miscanthus Rhizosphere	HGTHGQGAQQGPLKFPPLLDVSAKPRRSVDDIVGLLKDPAAYGLQPPMRSFSEKLTEEQMREIAEWIVKLKK
Ga0208531_10096511	3300026020	Rice Paddy Soil	AVPEDRAGIERIEQGQGAQQGRLKFPPLLEVSAKPRRGVEDIVALLKDPPAYGLQPPMRSFSTKLTEEQMREIAEWIVKLRHD
Ga0207641_115920291	3300026088	Switchgrass Rhizosphere	AKGEGARQGRLTFPPLLGVAAKPKRSVDDIVGLLKDPAAYGLQPPMRSFSDKLTEDQMREIAQWIVQLKM
Ga0207674_100639136	3300026116	Corn Rhizosphere	HGQGAQQGPLKFPPLLDVSAKPRRSVDDIVALLKDPTAYGLEPPMRSFSTKLSEEQMREIAGWIVKLKR
Ga0207674_110794891	3300026116	Corn Rhizosphere	RQGTLNFPPLLDVAAKPRRSVDDIVGLLKDPAAYGLQPPMRSFADKLTEPQMREIAEWIVKLKR
Ga0207674_114607722	3300026116	Corn Rhizosphere	QLNFPPLLDVSTKPRRTVDDIVSLLKDPPAYGLQPPMRSFSNKLTDEQMREIGEWIVKLK
Ga0207675_1002773351	3300026118	Switchgrass Rhizosphere	QQGPLKFPPLLDVPSKPRRSVDDIVALLKDPTAYGLQPPMRSFSTKLTEEQMREIAEWIVKLKR
Ga0207675_1018405572	3300026118	Switchgrass Rhizosphere	GASGEGGRQGPFRFPPLRNLSAKPRRTADDIVALLKDPRAYDLQPPMTSFSGKMTEDHMRQIAEWLLRLK
Ga0207683_109528732	3300026121	Miscanthus Rhizosphere	QQGQVHFPRLTGVGAKPQRNVDDIVGLLKNPEAYGLQPPMRSFSEKLTEPQMREIAEWVHRLR
Ga0209485_13481572	3300027691	Agricultural Soil	EGGQQGPLKFPPLLDVAAKPRRTADDIVALLKDPAAYGLQPPMRSFADKLTEAEMKEIAAWVVQLKR
Ga0209177_101275511	3300027775	Agricultural Soil	LKFPPLLDVSAKPRRSVDDIISLLKDPTVYGLQPPMRSFATKLTEEQMREIAEWIVKLKK
Ga0268264_111061711	3300028381	Switchgrass Rhizosphere	GEGARQGRLNFPPLLDVAAKPRRTVNDIVEILKDPPSYGLSPPMRSFSDKLNDEQMKEIGEWIVKLKR
Ga0268264_117963632	3300028381	Switchgrass Rhizosphere	QGAQQGPLKFPPLLDVSAKPRRSVDDIVALLKDPTAYGLQPPMRSFADKLREEQMREIAEWIVKLRQD
Ga0307408_1001436101	3300031548	Rhizosphere	GAQQGRAKFPPLIDVSAKPRRTVDDIVGLLKDPPAYGLQPPMRSFSNKLTEEQMRDIAEWIVKLRHD
Ga0307413_103412621	3300031824	Rhizosphere	HGEGARQGTLKFPPLIDVAAKPRRSVEDIVGLLKDPAAYGLQPPMRSFSDKLTEPQMREIAEWIVKLKK
Ga0307413_116022821	3300031824	Rhizosphere	GEGARQGRLNFPSLLDVPTKPRRTVDDIVVLLKDPTAYGLQPPMKSFSNKLTEQQMREIAEWIVKLKR
Ga0307410_100486341	3300031852	Rhizosphere	ARQGTLKFPPLIDVAAKPRRSVEDIVGLLKDPAAYGLQPPMRSFSDKLTEPQMREIAEWIVKLKK
Ga0307412_108060983	3300031911	Rhizosphere	RNLSAKPRRTADDIVALLKDPRAYDLQPPMTSFSGKMTEDHMRQIAEWLLQLK
Ga0307411_107227363	3300032005	Rhizosphere	ARQGRLNFPSLLDVPTKPRRTVDDIVVLLKDPTAYGLQPPMKSFSNKLTEQQMREIAEWIVKLKR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F103520

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences