NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F103464

Metagenome / Metatranscriptome Family F103464

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F103464
Family Type Metagenome / Metatranscriptome
Number of Sequences 101
Average Sequence Length 44 residues
Representative Sequence MRVVPILSGAKVALCPYCSRTVGIMRQVRDGAAGLLQSHPYRQY
Number of Associated Samples 91
Number of Associated Scaffolds 101

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 69.00 %
% of genes near scaffold ends (potentially truncated) 42.57 %
% of genes from short scaffolds (< 2000 bps) 79.21 %
Associated GOLD sequencing projects 86
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (69.307 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(6.931 % of family members)
Environment Ontology (ENVO) Unclassified
(36.634 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(43.564 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62
1JGI10216J12902_1000945932
2soilH2_103879622
3Ga0062589_1026702021
4Ga0063356_1006107023
5Ga0062595_1004658903
6Ga0066395_1000032524
7Ga0062594_1004093181
8Ga0068998_101670281
9Ga0068996_100837762
10Ga0070676_101537221
11Ga0070683_1002585171
12Ga0070683_1005899283
13Ga0070670_1000095604
14Ga0070670_1017987472
15Ga0070677_102662441
16Ga0070680_1003595863
17Ga0070689_1000288581
18Ga0070671_1012751562
19Ga0070674_1011177541
20Ga0070667_1019480771
21Ga0070700_1001022051
22Ga0070662_1011429953
23Ga0068867_1004118643
24Ga0070684_10000269912
25Ga0070684_1011448481
26Ga0068855_1001904093
27Ga0070664_1012015373
28Ga0066693_102739592
29Ga0068856_1001448853
30Ga0068856_1005826714
31Ga0068852_1019388531
32Ga0068861_1000320487
33Ga0066903_1018531232
34Ga0066903_1051866363
35Ga0074470_116193363
36Ga0080027_1000050715
37Ga0097621_1007680742
38Ga0068871_1007268421
39Ga0079222_123613501
40Ga0079218_114926092
41Ga0105245_117739272
42Ga0126377_114955472
43Ga0134124_112702591
44Ga0126383_127770771
45Ga0134127_113222632
46Ga0134123_100531307
47Ga0126359_10361022
48Ga0137314_10124095
49Ga0137425_10337872
50Ga0137455_11956572
51Ga0137427_101477732
52Ga0150985_1001350702
53Ga0150985_1009939622
54Ga0150985_1067408012
55Ga0150984_1053159912
56Ga0157374_112555983
57Ga0134079_106591371
58Ga0157376_122960191
59Ga0132258_134809862
60Ga0132255_1056377992
61Ga0184625_100218732
62Ga0184625_104428201
63Ga0193712_10890692
64Ga0193697_10096392
65Ga0197907_103975851
66Ga0206353_105559413
67Ga0210380_100629913
68Ga0213876_100701544
69Ga0193694_10178441
70Ga0222622_101761874
71Ga0247688_10718081
72Ga0208356_10044674
73Ga0207643_102055292
74Ga0207695_111234791
75Ga0207662_102534413
76Ga0207701_100174031
77Ga0207644_116809661
78Ga0207669_118568241
79Ga0207677_122436832
80Ga0209863_100303713
81Ga0209839_101096502
82Ga0207637_10107361
83Ga0247663_10257473
84Ga0268265_109365041
85Ga0311332_102349864
86Ga0308189_103996022
87Ga0265325_100182444
88Ga0265340_100668264
89Ga0318534_100134405
90Ga0318534_100514595
91Ga0318542_104985013
92Ga0318574_105843403
93Ga0318547_100624522
94Ga0308174_107597202
95Ga0310901_102676171
96Ga0306926_111054413
97Ga0335076_100862292
98Ga0364925_0319888_471_581
99Ga0314780_094747_1_120
100Ga0314780_102654_540_653
101Ga0364923_0216395_390_518
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 34.09%    β-sheet: 0.00%    Coil/Unstructured: 65.91%
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510152025303540MRVVPILSGAKVALCPYCSRTVGIMRQVRDGAAGLLQSHPYRQYSequenceα-helicesβ-strandsCoilSS Conf. score
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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
30.7%69.3%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Groundwater Sediment
Natural And Restored Wetlands
Soil
Sediment (Intertidal)
Groundwater Sediment
Groundwater Sediment
Soil
Terrestrial Soil
Tropical Forest Soil
Grasslands Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Soil
Agricultural Soil
Sugarcane Root And Bulk Soil
Arctic Peat Soil
Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Soil
Soil
Soil
Soil
Soil
Prmafrost Soil
Tropical Forest Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Corn Rhizosphere
Switchgrass Rhizosphere
Fen
Sediment
Arabidopsis Rhizosphere
Avena Fatua Rhizosphere
Corn Rhizosphere
Switchgrass Rhizosphere
Arabidopsis Thaliana Rhizosphere
Miscanthus Rhizosphere
Miscanthus Rhizosphere
Plant Roots
Miscanthus Rhizosphere
Corn Rhizosphere
Miscanthus Rhizosphere
Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Corn Rhizosphere
Avena Fatua Rhizosphere
Boreal Forest Soil
4.0%4.0%3.0%4.0%6.9%4.0%3.0%5.0%3.0%4.0%3.0%5.0%4.0%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI10216J12902_10009459323300000956SoilMRIVPVPPGAKVALCPYCHRSVGIMRSVHEGEAGTLKSHPERRFVRVPTR*
soilH2_1038796223300003324Sugarcane Root And Bulk SoilMRVVPILAGAKVALCPYCSRPVGIMRAVRDGAAGLLQSHPYREY*
Ga0062589_10267020213300004156SoilMRVVPILSGAKVALCPYCSRTVGIMRAVRDGAAGLLQSHPYRQY*
Ga0063356_10061070233300004463Arabidopsis Thaliana RhizosphereMRVVPILSGAKVALCPYCSRTVGIMRRVRDGAAGLLQSHPYRQY*
Ga0062595_10046589033300004479SoilMRVVPILPGAKVALCPYCSRPIGIMRMVRDGAAGLLQSHPYRQY
Ga0066395_10000325243300004633Tropical Forest SoilLRVVPILSGAKVALCPYCSRPVGIMRRVRDGAAGLLQSHPYRQY*
Ga0062594_10040931813300005093SoilMRVVPILPGAKVALCPYCSRPVGIMRKVRDGSAGMLQSHPYRQY*
Ga0068998_1016702813300005213Natural And Restored WetlandsILSGAKVALCPYCSRTVGIMRTVRDGAAGLLQSHPYREY*
Ga0068996_1008377623300005218Natural And Restored WetlandsMRVVPILPGAKVALCPYCSRPIGIMRMVRDGAAGLLQSHPYRRY*
Ga0070676_1015372213300005328Miscanthus RhizosphereRRRCRGTMRVVPILPGAKVALCPYCSRPIGIMRMVRDGAAGLLQSHPYRQY*
Ga0070683_10025851713300005329Corn RhizosphereMRVVPILSGAKVALCPYCSRPVGIMRQVRDGAAGLLQSHPYREY*
Ga0070683_10058992833300005329Corn RhizosphereMRVVPILSGAKVALCPYCSRTVGIMRQVRDGAAGLLQSHPYR
Ga0070670_10000956043300005331Switchgrass RhizosphereMSVVPILSGAKVALCPYCSRTVGIMRAVRDGAAGLLQSHPYRQY*
Ga0070670_10179874723300005331Switchgrass RhizosphereMRVVPILPGAKVALCPYCSRPIGIMRMVRDGAAGLLQSHPYRQY*
Ga0070677_1026624413300005333Miscanthus RhizosphereMRVVPILPGAKVALCPFCSRPVGIMRMVRDGAAGLLQSHSYRQY*
Ga0070680_10035958633300005336Corn RhizosphereMRVVPILSGAKVALCPYCSRTVGIMRQVRDGAAGLLQSHPYRPY*
Ga0070689_10002885813300005340Switchgrass RhizosphereLRRRCRGTMRVVPILPGAKVALCPFCSRPVGIMRMVRDGAAGLLQSHSYRQY*
Ga0070671_10127515623300005355Switchgrass RhizosphereRCSGTMRVVPILPGAKVALCPYCSRPVGIMRKVRDGAAGMLQSHPYRQY*
Ga0070674_10111775413300005356Miscanthus RhizosphereVPVLSGAKVALCPYCHRTVEIMRSVRGGEAGMLKSHPFRAY
Ga0070667_10194807713300005367Switchgrass RhizosphereRTVPVLSGAKVALCPYCHRTVEIMRSVRGGEAGMLKSHPFRAY*
Ga0070700_10010220513300005441Corn, Switchgrass And Miscanthus RhizosphereTMRVVPILPGAKVALCPFCSRPVGIMRMVRDGAAGLLQSHSYRQY*
Ga0070662_10114299533300005457Corn RhizosphereILPGAKVALCPFCSRPVGIMRMVRDGAAGLLQSHSYRQY*
Ga0068867_10041186433300005459Miscanthus RhizosphereCRGTMRVVPILPGAKVALCPFCSRPVGIMRMVRDGAAGLLQSHSYRQY*
Ga0070684_100002699123300005535Corn RhizosphereMRVVPILPGAKVALCPYCSRPVGIMRKVRDGAAGMLQSHPYRQY*
Ga0070684_10114484813300005535Corn RhizosphereTVPVLSGAKVALCPYCHRTVEIMRSVRDGEAGTLKSHPFRGY*
Ga0068855_10019040933300005563Corn RhizosphereLRVVPHVAGAKVAVCPYCHRAVEIMREVRHGEAAMLKSHPSRRY*
Ga0070664_10120153733300005564Corn RhizosphereKVALCPYCSRPVGIMRKVRDGAAGMLQSHPYRQY*
Ga0066693_1027395923300005566SoilMQVVPILSGAKVALCPYCSRPVGIMRRVRDGAAGLLQSHPYRQY*
Ga0068856_10014488533300005614Corn RhizosphereVVPLVSGAKVALCPYCLRTVEIMRQVRDGEAAMLKSHPARRY*
Ga0068856_10058267143300005614Corn RhizosphereVVPLVSGAKVALCPYCLRTVEIMRQVRDGEAAMLKSHPGRRY*
Ga0068852_10193885313300005616Corn RhizosphereGAKVALCPYCHRAVEIMREVRHGEAAMLKSHPSRRY*
Ga0068861_10003204873300005719Switchgrass RhizosphereRCRGTMRVVPILPGAKVALCPFCSRPVGIMRMVRDGAAGLLQSHSYRQY*
Ga0066903_10185312323300005764Tropical Forest SoilMRVVPILSGAKVALCPYCSRTVGIMRQVRDGAAGLLQSHPYREY*
Ga0066903_10518663633300005764Tropical Forest SoilSTLRRRCRGTLRVVPILSGAKVALCPYCSRTVGIMRTVRDGAAGLLQSHPYREY*
Ga0074470_1161933633300005836Sediment (Intertidal)MRVVPILPGAKVALCPFCSRPVGIMRKVRDGAAGMLQSHPFRQY*
Ga0080027_10000507153300005993Prmafrost SoilMRVVPILAGAKVALCPYCHRTVEIMRQVRDGAAGTLKSHPSRRY*
Ga0097621_10076807423300006237Miscanthus RhizosphereLRVVPILAGAKVALCPDGSRPVGSMRKVRDGAAGLLQSHPYRQY*
Ga0068871_10072684213300006358Miscanthus RhizosphereCKGSLRTVPVLSGAKVALCPYCHRTVEIMRSVRGGEAGMLKSHPFRAY*
Ga0079222_1236135013300006755Agricultural SoilMRVVPILSGAKVALCPYCSRTVGIMRQVRDGAAGLLQSHPYRQY*
Ga0079218_1149260923300007004Agricultural SoilMRVVPVLSGAKVALCPYCNRTVAIMRPVRDGAAGLLK
Ga0105245_1177392723300009098Miscanthus RhizosphereMRVVPILPGAKVALCPYCSRPVGIMRKVRDGAAGMLQSHPYRQ
Ga0126377_1149554723300010362Tropical Forest SoilMRVVPILSGAKVALCPYCSRPVGIMRRVRDGSAGLLQSHPYRQY*
Ga0134124_1127025913300010397Terrestrial SoilMRVVPILPGAKVALCPFCSRPVGIMRKVRDGAAGMLQSHPYRQY*
Ga0126383_1277707713300010398Tropical Forest SoilMRVVPILAGAKVALCPYCARTVGIMRTVRDGAAGLLQSHPYREY*
Ga0134127_1132226323300010399Terrestrial SoilMRVVPILSGAKVALCPFCSRTVGIMRRVRDGAAGLLQSHPYRQY*
Ga0134123_1005313073300010403Terrestrial SoilMRVVPILPGAKVALCPFCSRPVGIMRMVRDGAAGLLQSHSYRQ
Ga0126359_103610223300010869Boreal Forest SoilMRVVPILAGAKVALCPYCHRTVEIMRQVRDGAAGTLKSHPGRRY*
Ga0137314_101240953300011420SoilMRVVPILSGAKVALCPYCNRTVGIMRAVRDGAAGLLQSHPYRQY*
Ga0137425_103378723300011422SoilMRVVPILSGAKVALCPYCSRTVGIMRAVRDGVAGLLQSHPYRQY*
Ga0137455_119565723300011429SoilMSVVPILSGAKVALCPYCSRTVGIMRAVRDGAAGLLQS
Ga0137427_1014777323300011445SoilMRVVPILSGAKVALCPYCSRTVGIMRAVRDGAAGMLQSHPYRQY*
Ga0150985_10013507023300012212Avena Fatua RhizosphereMRVVPILPGAKVALCPYCSRPVGIMRKVRDGAEGMLQSHPYRQY*
Ga0150985_10099396223300012212Avena Fatua RhizosphereMRVVPILPGAKVALCPYCSRPIGIMRKVRDGAAGMLQSHPYRQY*
Ga0150985_10674080123300012212Avena Fatua RhizosphereMRGVPLLPGAKVALCPYCRRPIGIMRKVRDGAAGMLQSHPYRQY*
Ga0150984_10531599123300012469Avena Fatua RhizosphereVVPILAGAKVALCPYCARTVGIMRQVRDGAAGLLQSHPYRLY*
Ga0157374_1125559833300013296Miscanthus RhizosphereRRCRGTMRVVPILSGAKVALCPYCSRTVGIMRQVRDGAAGLLQSHPYRPY*
Ga0134079_1065913713300014166Grasslands SoilILPGAKVALCPYCSRPIGIMRKVRDGAAGMLQSHPYRQY*
Ga0157376_1229601913300014969Miscanthus RhizosphereMRVVPILSGAKVALCPYCSRTVGIMRRVRDGAAGLLQSHPYREY*
Ga0132258_1348098623300015371Arabidopsis RhizosphereMSVVPILSGAKVALCPYCSRTVGIMRRVRDGAAGLLQSHPYRQY*
Ga0132255_10563779923300015374Arabidopsis RhizosphereVPILSGAKVALCPYCSRTVGIMRTVRDGAAGLLQSHPYRE
Ga0184625_1002187323300018081Groundwater SedimentMRVVPVLSGAKVALCPYCNRTVAIMRPVRDGAAALLKSHPFREYPENT
Ga0184625_1044282013300018081Groundwater SedimentMRVVPILSGAKVALCPYCSRTVGIMRAVRDGAAGLLQSHPYRQY
Ga0193712_108906923300019880SoilMRVVPILSGAKVALCPYCSRTVGIMRRVRDGAAGLLQSHPYRQY
Ga0193697_100963923300020005SoilMRVVPVLSGAKVAMCPYCNRTVAIMRPVRDGAAALLKSHPFREYPENT
Ga0197907_1039758513300020069Corn, Switchgrass And Miscanthus RhizosphereVAGAKVAVCPYCHRAVEIMREVRHGEAAMLKSHPSRRY
Ga0206353_1055594133300020082Corn, Switchgrass And Miscanthus RhizosphereAGAKVAVCPYGHRAVEIMREVRHGEAAMLKSHPSRRY
Ga0210380_1006299133300021082Groundwater SedimentMSVVPILSGAKVALCPYCSRTVGIMRAVRDGAAGLLQSHPYRQY
Ga0213876_1007015443300021384Plant RootsVVPILAGAKVALCPYCSRPVGIMRKVRDGAAGLLQSHPYRQY
Ga0193694_101784413300021415SoilMRVVPILPGAKVALCPYCSRPVGIMRKVRDGAAGMLQSHPYRQY
Ga0222622_1017618743300022756Groundwater SedimentRRRCRGTMRVVPILSGAKVALCPYCSRTVGIMRAVRDGAAGLLQSHPYRQY
Ga0247688_107180813300024186SoilRRCRGTMRVVPILPGAKVALCPFCSRPIGIMRKVRDGAEGLLQSHPYRQY
Ga0208356_100446743300025504Arctic Peat SoilMRVVPILAGAKVALCPYCHRTVEIMRQVRDGAAGTLKSHPSRKY
Ga0207643_1020552923300025908Miscanthus RhizosphereMRVVPILPGAKVALCPFCSRPVGIMRMVRDGAAGLLQSHSYRQY
Ga0207695_1112347913300025913Corn RhizosphereVVPLVSGAKVALCPYCLRTVEIMRQVRDGEAAMLKSHPARRY
Ga0207662_1025344133300025918Switchgrass RhizosphereVPILSGAKVALCPYCSRTVGIMRTVRDGAAGLLQSHPYREY
Ga0207701_1001740313300025930Corn, Switchgrass And Miscanthus RhizosphereMRVVPILPGAKVALCPYCSRPVGIMRKVRDGSAGMLQSHPYRQY
Ga0207644_1168096613300025931Switchgrass RhizosphereRCSGTMRVVPILPGAKVALCPYCSRPVGIMRKVRDGAAGMLQSHPYRQY
Ga0207669_1185682413300025937Miscanthus RhizosphereMRVVPVLSGAKVALCPYCNRTVAIMRPVRDGAAGLLKSHPYREYPENT
Ga0207677_1224368323300026023Miscanthus RhizosphereGTMRVVPILPGAKVALCPYCSRPVGIMRKVRDGAAGMLQSHPYRQY
Ga0209863_1003037133300026281Prmafrost SoilMRVVPILAGAKVALCPYCHRTVEIMRQVRDGAAGTLKSHPSRRY
Ga0209839_1010965023300026294SoilMRVVPILAGAKVAICPYCHRTVEIMRQVRDGAAGTLKSHPSRRY
Ga0207637_101073613300027483SoilMRVVPILSGAKVALCPYCSRTVGIMRAVRDGAAGLLQ
Ga0247663_102574733300028145SoilMRVVPILPGAKVALCPFCSRPIGIMRKVRDGAEGLLQSHPYRQY
Ga0268265_1093650413300028380Switchgrass RhizosphereMRVVPILPGAKVALCPFCSRPVGIMRMVRDGAAGL
Ga0311332_1023498643300029984FenTLRVVPLMSGAKVALCPYCQRTVEIMRQVRDGEAAMLKSHPGRRY
Ga0308189_1039960223300031058SoilMQVVPILSGAKVALCPYCSRTVGIMRRVRDGAAGLLQSHPYRQY
Ga0265325_1001824443300031241RhizosphereMSGAKVALCPYCQRTVEIMRQVRDGEAAMLKSHPSRRY
Ga0265340_1006682643300031247RhizosphereVPLMSGAKVALCPYCQRTVEIMRQVRDGEAAMLKSHPSRRY
Ga0318534_1001344053300031544SoilMRVVPVLPGAKVALCPYCLRTVEIMRSVRDGEAGSLKSHPERRFG
Ga0318534_1005145953300031544SoilLRVVPVLAGAKVALCPYCHRTVEIMRSVKDGEAGTLKSHPDRFRY
Ga0318542_1049850133300031668SoilLPGAKVALCPYCLRTVEIMRSVRDGEAGSLKSHPERRFG
Ga0318574_1058434033300031680SoilKGTLRVVPVLAGAKVALCPYCHRTVEIMRSVKDGEAGTLKSHPDRFRY
Ga0318547_1006245223300031781SoilMVPVLPGAKVALCPYCLRTVEIMRSVRDGEAGSLKSHPERRFG
Ga0308174_1075972023300031939SoilTLRVVPLVAGAKVALCPYCLRTVEIMRQVRDGEAAMLKSHPSRRY
Ga0310901_1026761713300031940SoilTLRRRCRGTMRVVPILPGAKVALCPFCSRPVGIMRMVRDGAAGLLQSHSYRQY
Ga0306926_1110544133300031954SoilVPVLAGAKVALCPYCHRTVEIMRSVKDGEAGTLKSHP
Ga0335076_1008622923300032955SoilMRVVPIVPGAKVALCPYCHRTVEIMRAVRDGEAGSLKSHPERR
Ga0364925_0319888_471_5813300034147SedimentMSGAKVALCPYCQRTVGIMRSVRNGEAGTLKSHPSRR
Ga0314780_094747_1_1203300034659SoilMRVVPILPGAKVALCPYCSRPVGIMRKVRDGAAGMLQSHP
Ga0314780_102654_540_6533300034659SoilMRVVPILAGAKVALCPYCSRPVGIMRAVRDGAAGLLQS
Ga0364923_0216395_390_5183300034690SedimentMRVVPILSGAKVALCPYCSRTVGIMRAVRDGAAGLLQSHPYRQ


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