Basic Information | |
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Family ID | F103464 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 101 |
Average Sequence Length | 44 residues |
Representative Sequence | MRVVPILSGAKVALCPYCSRTVGIMRQVRDGAAGLLQSHPYRQY |
Number of Associated Samples | 91 |
Number of Associated Scaffolds | 101 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 69.00 % |
% of genes near scaffold ends (potentially truncated) | 42.57 % |
% of genes from short scaffolds (< 2000 bps) | 79.21 % |
Associated GOLD sequencing projects | 86 |
AlphaFold2 3D model prediction | No |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (69.307 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (6.931 % of family members) |
Environment Ontology (ENVO) | Unclassified (36.634 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere (43.564 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 34.09% β-sheet: 0.00% Coil/Unstructured: 65.91% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Groundwater Sediment Natural And Restored Wetlands Soil Sediment (Intertidal) Groundwater Sediment Groundwater Sediment Soil Terrestrial Soil Tropical Forest Soil Grasslands Soil Corn, Switchgrass And Miscanthus Rhizosphere Soil Agricultural Soil Sugarcane Root And Bulk Soil Arctic Peat Soil Soil Corn, Switchgrass And Miscanthus Rhizosphere Soil Soil Soil Soil Soil Prmafrost Soil Tropical Forest Soil Corn, Switchgrass And Miscanthus Rhizosphere Corn Rhizosphere Switchgrass Rhizosphere Fen Sediment Arabidopsis Rhizosphere Avena Fatua Rhizosphere Corn Rhizosphere Switchgrass Rhizosphere Arabidopsis Thaliana Rhizosphere Miscanthus Rhizosphere Miscanthus Rhizosphere Plant Roots Miscanthus Rhizosphere Corn Rhizosphere Miscanthus Rhizosphere Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Corn Rhizosphere Avena Fatua Rhizosphere Boreal Forest Soil |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
JGI10216J12902_1000945932 | 3300000956 | Soil | MRIVPVPPGAKVALCPYCHRSVGIMRSVHEGEAGTLKSHPERRFVRVPTR* |
soilH2_103879622 | 3300003324 | Sugarcane Root And Bulk Soil | MRVVPILAGAKVALCPYCSRPVGIMRAVRDGAAGLLQSHPYREY* |
Ga0062589_1026702021 | 3300004156 | Soil | MRVVPILSGAKVALCPYCSRTVGIMRAVRDGAAGLLQSHPYRQY* |
Ga0063356_1006107023 | 3300004463 | Arabidopsis Thaliana Rhizosphere | MRVVPILSGAKVALCPYCSRTVGIMRRVRDGAAGLLQSHPYRQY* |
Ga0062595_1004658903 | 3300004479 | Soil | MRVVPILPGAKVALCPYCSRPIGIMRMVRDGAAGLLQSHPYRQY |
Ga0066395_1000032524 | 3300004633 | Tropical Forest Soil | LRVVPILSGAKVALCPYCSRPVGIMRRVRDGAAGLLQSHPYRQY* |
Ga0062594_1004093181 | 3300005093 | Soil | MRVVPILPGAKVALCPYCSRPVGIMRKVRDGSAGMLQSHPYRQY* |
Ga0068998_101670281 | 3300005213 | Natural And Restored Wetlands | ILSGAKVALCPYCSRTVGIMRTVRDGAAGLLQSHPYREY* |
Ga0068996_100837762 | 3300005218 | Natural And Restored Wetlands | MRVVPILPGAKVALCPYCSRPIGIMRMVRDGAAGLLQSHPYRRY* |
Ga0070676_101537221 | 3300005328 | Miscanthus Rhizosphere | RRRCRGTMRVVPILPGAKVALCPYCSRPIGIMRMVRDGAAGLLQSHPYRQY* |
Ga0070683_1002585171 | 3300005329 | Corn Rhizosphere | MRVVPILSGAKVALCPYCSRPVGIMRQVRDGAAGLLQSHPYREY* |
Ga0070683_1005899283 | 3300005329 | Corn Rhizosphere | MRVVPILSGAKVALCPYCSRTVGIMRQVRDGAAGLLQSHPYR |
Ga0070670_1000095604 | 3300005331 | Switchgrass Rhizosphere | MSVVPILSGAKVALCPYCSRTVGIMRAVRDGAAGLLQSHPYRQY* |
Ga0070670_1017987472 | 3300005331 | Switchgrass Rhizosphere | MRVVPILPGAKVALCPYCSRPIGIMRMVRDGAAGLLQSHPYRQY* |
Ga0070677_102662441 | 3300005333 | Miscanthus Rhizosphere | MRVVPILPGAKVALCPFCSRPVGIMRMVRDGAAGLLQSHSYRQY* |
Ga0070680_1003595863 | 3300005336 | Corn Rhizosphere | MRVVPILSGAKVALCPYCSRTVGIMRQVRDGAAGLLQSHPYRPY* |
Ga0070689_1000288581 | 3300005340 | Switchgrass Rhizosphere | LRRRCRGTMRVVPILPGAKVALCPFCSRPVGIMRMVRDGAAGLLQSHSYRQY* |
Ga0070671_1012751562 | 3300005355 | Switchgrass Rhizosphere | RCSGTMRVVPILPGAKVALCPYCSRPVGIMRKVRDGAAGMLQSHPYRQY* |
Ga0070674_1011177541 | 3300005356 | Miscanthus Rhizosphere | VPVLSGAKVALCPYCHRTVEIMRSVRGGEAGMLKSHPFRAY |
Ga0070667_1019480771 | 3300005367 | Switchgrass Rhizosphere | RTVPVLSGAKVALCPYCHRTVEIMRSVRGGEAGMLKSHPFRAY* |
Ga0070700_1001022051 | 3300005441 | Corn, Switchgrass And Miscanthus Rhizosphere | TMRVVPILPGAKVALCPFCSRPVGIMRMVRDGAAGLLQSHSYRQY* |
Ga0070662_1011429953 | 3300005457 | Corn Rhizosphere | ILPGAKVALCPFCSRPVGIMRMVRDGAAGLLQSHSYRQY* |
Ga0068867_1004118643 | 3300005459 | Miscanthus Rhizosphere | CRGTMRVVPILPGAKVALCPFCSRPVGIMRMVRDGAAGLLQSHSYRQY* |
Ga0070684_10000269912 | 3300005535 | Corn Rhizosphere | MRVVPILPGAKVALCPYCSRPVGIMRKVRDGAAGMLQSHPYRQY* |
Ga0070684_1011448481 | 3300005535 | Corn Rhizosphere | TVPVLSGAKVALCPYCHRTVEIMRSVRDGEAGTLKSHPFRGY* |
Ga0068855_1001904093 | 3300005563 | Corn Rhizosphere | LRVVPHVAGAKVAVCPYCHRAVEIMREVRHGEAAMLKSHPSRRY* |
Ga0070664_1012015373 | 3300005564 | Corn Rhizosphere | KVALCPYCSRPVGIMRKVRDGAAGMLQSHPYRQY* |
Ga0066693_102739592 | 3300005566 | Soil | MQVVPILSGAKVALCPYCSRPVGIMRRVRDGAAGLLQSHPYRQY* |
Ga0068856_1001448853 | 3300005614 | Corn Rhizosphere | VVPLVSGAKVALCPYCLRTVEIMRQVRDGEAAMLKSHPARRY* |
Ga0068856_1005826714 | 3300005614 | Corn Rhizosphere | VVPLVSGAKVALCPYCLRTVEIMRQVRDGEAAMLKSHPGRRY* |
Ga0068852_1019388531 | 3300005616 | Corn Rhizosphere | GAKVALCPYCHRAVEIMREVRHGEAAMLKSHPSRRY* |
Ga0068861_1000320487 | 3300005719 | Switchgrass Rhizosphere | RCRGTMRVVPILPGAKVALCPFCSRPVGIMRMVRDGAAGLLQSHSYRQY* |
Ga0066903_1018531232 | 3300005764 | Tropical Forest Soil | MRVVPILSGAKVALCPYCSRTVGIMRQVRDGAAGLLQSHPYREY* |
Ga0066903_1051866363 | 3300005764 | Tropical Forest Soil | STLRRRCRGTLRVVPILSGAKVALCPYCSRTVGIMRTVRDGAAGLLQSHPYREY* |
Ga0074470_116193363 | 3300005836 | Sediment (Intertidal) | MRVVPILPGAKVALCPFCSRPVGIMRKVRDGAAGMLQSHPFRQY* |
Ga0080027_1000050715 | 3300005993 | Prmafrost Soil | MRVVPILAGAKVALCPYCHRTVEIMRQVRDGAAGTLKSHPSRRY* |
Ga0097621_1007680742 | 3300006237 | Miscanthus Rhizosphere | LRVVPILAGAKVALCPDGSRPVGSMRKVRDGAAGLLQSHPYRQY* |
Ga0068871_1007268421 | 3300006358 | Miscanthus Rhizosphere | CKGSLRTVPVLSGAKVALCPYCHRTVEIMRSVRGGEAGMLKSHPFRAY* |
Ga0079222_123613501 | 3300006755 | Agricultural Soil | MRVVPILSGAKVALCPYCSRTVGIMRQVRDGAAGLLQSHPYRQY* |
Ga0079218_114926092 | 3300007004 | Agricultural Soil | MRVVPVLSGAKVALCPYCNRTVAIMRPVRDGAAGLLK |
Ga0105245_117739272 | 3300009098 | Miscanthus Rhizosphere | MRVVPILPGAKVALCPYCSRPVGIMRKVRDGAAGMLQSHPYRQ |
Ga0126377_114955472 | 3300010362 | Tropical Forest Soil | MRVVPILSGAKVALCPYCSRPVGIMRRVRDGSAGLLQSHPYRQY* |
Ga0134124_112702591 | 3300010397 | Terrestrial Soil | MRVVPILPGAKVALCPFCSRPVGIMRKVRDGAAGMLQSHPYRQY* |
Ga0126383_127770771 | 3300010398 | Tropical Forest Soil | MRVVPILAGAKVALCPYCARTVGIMRTVRDGAAGLLQSHPYREY* |
Ga0134127_113222632 | 3300010399 | Terrestrial Soil | MRVVPILSGAKVALCPFCSRTVGIMRRVRDGAAGLLQSHPYRQY* |
Ga0134123_100531307 | 3300010403 | Terrestrial Soil | MRVVPILPGAKVALCPFCSRPVGIMRMVRDGAAGLLQSHSYRQ |
Ga0126359_10361022 | 3300010869 | Boreal Forest Soil | MRVVPILAGAKVALCPYCHRTVEIMRQVRDGAAGTLKSHPGRRY* |
Ga0137314_10124095 | 3300011420 | Soil | MRVVPILSGAKVALCPYCNRTVGIMRAVRDGAAGLLQSHPYRQY* |
Ga0137425_10337872 | 3300011422 | Soil | MRVVPILSGAKVALCPYCSRTVGIMRAVRDGVAGLLQSHPYRQY* |
Ga0137455_11956572 | 3300011429 | Soil | MSVVPILSGAKVALCPYCSRTVGIMRAVRDGAAGLLQS |
Ga0137427_101477732 | 3300011445 | Soil | MRVVPILSGAKVALCPYCSRTVGIMRAVRDGAAGMLQSHPYRQY* |
Ga0150985_1001350702 | 3300012212 | Avena Fatua Rhizosphere | MRVVPILPGAKVALCPYCSRPVGIMRKVRDGAEGMLQSHPYRQY* |
Ga0150985_1009939622 | 3300012212 | Avena Fatua Rhizosphere | MRVVPILPGAKVALCPYCSRPIGIMRKVRDGAAGMLQSHPYRQY* |
Ga0150985_1067408012 | 3300012212 | Avena Fatua Rhizosphere | MRGVPLLPGAKVALCPYCRRPIGIMRKVRDGAAGMLQSHPYRQY* |
Ga0150984_1053159912 | 3300012469 | Avena Fatua Rhizosphere | VVPILAGAKVALCPYCARTVGIMRQVRDGAAGLLQSHPYRLY* |
Ga0157374_112555983 | 3300013296 | Miscanthus Rhizosphere | RRCRGTMRVVPILSGAKVALCPYCSRTVGIMRQVRDGAAGLLQSHPYRPY* |
Ga0134079_106591371 | 3300014166 | Grasslands Soil | ILPGAKVALCPYCSRPIGIMRKVRDGAAGMLQSHPYRQY* |
Ga0157376_122960191 | 3300014969 | Miscanthus Rhizosphere | MRVVPILSGAKVALCPYCSRTVGIMRRVRDGAAGLLQSHPYREY* |
Ga0132258_134809862 | 3300015371 | Arabidopsis Rhizosphere | MSVVPILSGAKVALCPYCSRTVGIMRRVRDGAAGLLQSHPYRQY* |
Ga0132255_1056377992 | 3300015374 | Arabidopsis Rhizosphere | VPILSGAKVALCPYCSRTVGIMRTVRDGAAGLLQSHPYRE |
Ga0184625_100218732 | 3300018081 | Groundwater Sediment | MRVVPVLSGAKVALCPYCNRTVAIMRPVRDGAAALLKSHPFREYPENT |
Ga0184625_104428201 | 3300018081 | Groundwater Sediment | MRVVPILSGAKVALCPYCSRTVGIMRAVRDGAAGLLQSHPYRQY |
Ga0193712_10890692 | 3300019880 | Soil | MRVVPILSGAKVALCPYCSRTVGIMRRVRDGAAGLLQSHPYRQY |
Ga0193697_10096392 | 3300020005 | Soil | MRVVPVLSGAKVAMCPYCNRTVAIMRPVRDGAAALLKSHPFREYPENT |
Ga0197907_103975851 | 3300020069 | Corn, Switchgrass And Miscanthus Rhizosphere | VAGAKVAVCPYCHRAVEIMREVRHGEAAMLKSHPSRRY |
Ga0206353_105559413 | 3300020082 | Corn, Switchgrass And Miscanthus Rhizosphere | AGAKVAVCPYGHRAVEIMREVRHGEAAMLKSHPSRRY |
Ga0210380_100629913 | 3300021082 | Groundwater Sediment | MSVVPILSGAKVALCPYCSRTVGIMRAVRDGAAGLLQSHPYRQY |
Ga0213876_100701544 | 3300021384 | Plant Roots | VVPILAGAKVALCPYCSRPVGIMRKVRDGAAGLLQSHPYRQY |
Ga0193694_10178441 | 3300021415 | Soil | MRVVPILPGAKVALCPYCSRPVGIMRKVRDGAAGMLQSHPYRQY |
Ga0222622_101761874 | 3300022756 | Groundwater Sediment | RRRCRGTMRVVPILSGAKVALCPYCSRTVGIMRAVRDGAAGLLQSHPYRQY |
Ga0247688_10718081 | 3300024186 | Soil | RRCRGTMRVVPILPGAKVALCPFCSRPIGIMRKVRDGAEGLLQSHPYRQY |
Ga0208356_10044674 | 3300025504 | Arctic Peat Soil | MRVVPILAGAKVALCPYCHRTVEIMRQVRDGAAGTLKSHPSRKY |
Ga0207643_102055292 | 3300025908 | Miscanthus Rhizosphere | MRVVPILPGAKVALCPFCSRPVGIMRMVRDGAAGLLQSHSYRQY |
Ga0207695_111234791 | 3300025913 | Corn Rhizosphere | VVPLVSGAKVALCPYCLRTVEIMRQVRDGEAAMLKSHPARRY |
Ga0207662_102534413 | 3300025918 | Switchgrass Rhizosphere | VPILSGAKVALCPYCSRTVGIMRTVRDGAAGLLQSHPYREY |
Ga0207701_100174031 | 3300025930 | Corn, Switchgrass And Miscanthus Rhizosphere | MRVVPILPGAKVALCPYCSRPVGIMRKVRDGSAGMLQSHPYRQY |
Ga0207644_116809661 | 3300025931 | Switchgrass Rhizosphere | RCSGTMRVVPILPGAKVALCPYCSRPVGIMRKVRDGAAGMLQSHPYRQY |
Ga0207669_118568241 | 3300025937 | Miscanthus Rhizosphere | MRVVPVLSGAKVALCPYCNRTVAIMRPVRDGAAGLLKSHPYREYPENT |
Ga0207677_122436832 | 3300026023 | Miscanthus Rhizosphere | GTMRVVPILPGAKVALCPYCSRPVGIMRKVRDGAAGMLQSHPYRQY |
Ga0209863_100303713 | 3300026281 | Prmafrost Soil | MRVVPILAGAKVALCPYCHRTVEIMRQVRDGAAGTLKSHPSRRY |
Ga0209839_101096502 | 3300026294 | Soil | MRVVPILAGAKVAICPYCHRTVEIMRQVRDGAAGTLKSHPSRRY |
Ga0207637_10107361 | 3300027483 | Soil | MRVVPILSGAKVALCPYCSRTVGIMRAVRDGAAGLLQ |
Ga0247663_10257473 | 3300028145 | Soil | MRVVPILPGAKVALCPFCSRPIGIMRKVRDGAEGLLQSHPYRQY |
Ga0268265_109365041 | 3300028380 | Switchgrass Rhizosphere | MRVVPILPGAKVALCPFCSRPVGIMRMVRDGAAGL |
Ga0311332_102349864 | 3300029984 | Fen | TLRVVPLMSGAKVALCPYCQRTVEIMRQVRDGEAAMLKSHPGRRY |
Ga0308189_103996022 | 3300031058 | Soil | MQVVPILSGAKVALCPYCSRTVGIMRRVRDGAAGLLQSHPYRQY |
Ga0265325_100182444 | 3300031241 | Rhizosphere | MSGAKVALCPYCQRTVEIMRQVRDGEAAMLKSHPSRRY |
Ga0265340_100668264 | 3300031247 | Rhizosphere | VPLMSGAKVALCPYCQRTVEIMRQVRDGEAAMLKSHPSRRY |
Ga0318534_100134405 | 3300031544 | Soil | MRVVPVLPGAKVALCPYCLRTVEIMRSVRDGEAGSLKSHPERRFG |
Ga0318534_100514595 | 3300031544 | Soil | LRVVPVLAGAKVALCPYCHRTVEIMRSVKDGEAGTLKSHPDRFRY |
Ga0318542_104985013 | 3300031668 | Soil | LPGAKVALCPYCLRTVEIMRSVRDGEAGSLKSHPERRFG |
Ga0318574_105843403 | 3300031680 | Soil | KGTLRVVPVLAGAKVALCPYCHRTVEIMRSVKDGEAGTLKSHPDRFRY |
Ga0318547_100624522 | 3300031781 | Soil | MVPVLPGAKVALCPYCLRTVEIMRSVRDGEAGSLKSHPERRFG |
Ga0308174_107597202 | 3300031939 | Soil | TLRVVPLVAGAKVALCPYCLRTVEIMRQVRDGEAAMLKSHPSRRY |
Ga0310901_102676171 | 3300031940 | Soil | TLRRRCRGTMRVVPILPGAKVALCPFCSRPVGIMRMVRDGAAGLLQSHSYRQY |
Ga0306926_111054413 | 3300031954 | Soil | VPVLAGAKVALCPYCHRTVEIMRSVKDGEAGTLKSHP |
Ga0335076_100862292 | 3300032955 | Soil | MRVVPIVPGAKVALCPYCHRTVEIMRAVRDGEAGSLKSHPERR |
Ga0364925_0319888_471_581 | 3300034147 | Sediment | MSGAKVALCPYCQRTVGIMRSVRNGEAGTLKSHPSRR |
Ga0314780_094747_1_120 | 3300034659 | Soil | MRVVPILPGAKVALCPYCSRPVGIMRKVRDGAAGMLQSHP |
Ga0314780_102654_540_653 | 3300034659 | Soil | MRVVPILAGAKVALCPYCSRPVGIMRAVRDGAAGLLQS |
Ga0364923_0216395_390_518 | 3300034690 | Sediment | MRVVPILSGAKVALCPYCSRTVGIMRAVRDGAAGLLQSHPYRQ |
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