Metagenome / Metatranscriptome Family F103459

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F103459
Family Type	Metagenome / Metatranscriptome
Number of Sequences	101
Average Sequence Length	59 residues
Representative Sequence	MKLSDRIKRWWNPAEWKDEHPVETEGGAGHPLTEEERAEDRRITSDVRFPETTTDYSDET
Number of Associated Samples	81
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	78.22 %
% of genes near scaffold ends (potentially truncated)	31.68 %
% of genes from short scaffolds (< 2000 bps)	83.17 %
Associated GOLD sequencing projects	76
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.24

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (51.485 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil (11.881 % of family members)
Environment Ontology (ENVO)	Unclassified (23.762 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (60.396 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 17.05% β-sheet: 0.00% Coil/Unstructured: 82.95%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.24
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.24
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF00441	Acyl-CoA_dh_1	34.65
PF07883	Cupin_2	16.83
PF02771	Acyl-CoA_dh_N	9.90
PF00291	PALP	5.94
PF02770	Acyl-CoA_dh_M	5.94
PF02146	SIR2	1.98
PF08245	Mur_ligase_M	0.99
PF00583	Acetyltransf_1	0.99
PF01872	RibD_C	0.99
PF01408	GFO_IDH_MocA	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	50.50
COG0846	NAD-dependent protein deacetylase, SIR2 family	Posttranslational modification, protein turnover, chaperones [O]	1.98
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	0.99
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	0.99

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	56.44 %
Unclassified	root	N/A	43.56 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	56.44 %
Unclassified	root	N/A	43.56 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	51.49 %
Unclassified	root	N/A	43.56 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	3.96 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.56 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	35.64 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	3.96 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.99 %
Opisthokonta	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.56 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	31.68 %
Stenosarchaea group	clade	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group	3.96 %
Candidatus Marinimicrobia	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia	0.99 %
Fungi	kingdom	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.56 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	13.86 %
Halobacteria	class	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria	3.96 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	3.96 %
Candidatus Marinimicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	0.99 %
Fungi incertae sedis	no rank	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.56 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	10.89 %
Haloferacales	order	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales	2.97 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1.98 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	1.98 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.99 %
Olpidiomycota	phylum	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Olpidiomycota	0.99 %
Halobacteriales	order	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales	0.99 %
Candidatus Marinimicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.56 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	10.89 %
Haloferacaceae	family	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Haloferacaceae	2.97 %
Actinopolymorphaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Actinopolymorphaceae	1.98 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1.98 %
Olpidiomycotina	subphylum	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Olpidiomycota → Olpidiomycotina	0.99 %
Halobacteriaceae	family	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales → Halobacteriaceae	0.99 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.99 %
Candidatus Marinimicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.56 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	10.89 %
Halogeometricum	genus	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Haloferacaceae → Halogeometricum	2.97 %
Actinopolymorpha	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Actinopolymorphaceae → Actinopolymorpha	1.98 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1.98 %
Olpidiomycetes	class	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Olpidiomycota → Olpidiomycotina → Olpidiomycetes	0.99 %
Halobacteriaceae	family	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales → Halobacteriaceae	0.99 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.99 %
Candidatus Marinimicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.56 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	10.89 %
Halogeometricum pallidum	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Haloferacaceae → Halogeometricum → Halogeometricum pallidum	2.97 %
Actinopolymorpha cephalotaxi	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Actinopolymorphaceae → Actinopolymorpha → Actinopolymorpha cephalotaxi	1.98 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1.98 %
Olpidiales	order	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Olpidiomycota → Olpidiomycotina → Olpidiomycetes → Olpidiales	0.99 %
Halobacteriaceae	family	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales → Halobacteriaceae	0.99 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.99 %
Candidatus Marinimicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.56 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	10.89 %
Halogeometricum pallidum	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Haloferacaceae → Halogeometricum → Halogeometricum pallidum	2.97 %
Actinopolymorpha cephalotaxi	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Actinopolymorphaceae → Actinopolymorpha → Actinopolymorpha cephalotaxi	1.98 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1.98 %
Olpidiaceae	family	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Olpidiomycota → Olpidiomycotina → Olpidiomycetes → Olpidiales → Olpidiaceae	0.99 %
Halobacteriaceae	family	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales → Halobacteriaceae	0.99 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.99 %
Candidatus Marinimicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.56 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	10.89 %
Halogeometricum pallidum	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Haloferacaceae → Halogeometricum → Halogeometricum pallidum	2.97 %
Actinopolymorpha cephalotaxi	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Actinopolymorphaceae → Actinopolymorpha → Actinopolymorpha cephalotaxi	1.98 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1.98 %
Olpidium	genus	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Olpidiomycota → Olpidiomycotina → Olpidiomycetes → Olpidiales → Olpidiaceae → Olpidium	0.99 %
Halobacteriaceae	family	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales → Halobacteriaceae	0.99 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.99 %
Candidatus Marinimicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.56 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	10.89 %
Halogeometricum pallidum	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Haloferacaceae → Halogeometricum → Halogeometricum pallidum	2.97 %
Actinopolymorpha cephalotaxi	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Actinopolymorphaceae → Actinopolymorpha → Actinopolymorpha cephalotaxi	1.98 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1.98 %
Olpidium bornovanus	species	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Olpidiomycota → Olpidiomycotina → Olpidiomycetes → Olpidiales → Olpidiaceae → Olpidium → Olpidium bornovanus	0.99 %
Halobacteriaceae	family	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales → Halobacteriaceae	0.99 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.99 %
Candidatus Marinimicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	0.99 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459004\|F62QY1Z02IKEMC	Not Available	537	Open in IMG/M
2170459022\|GZEQPF101CMSCP	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	543	Open in IMG/M
2209111022\|2221192668	Not Available	1332	Open in IMG/M
3300000956\|JGI10216J12902_106453250	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1489	Open in IMG/M
3300000956\|JGI10216J12902_121031347	All Organisms → cellular organisms → Bacteria	582	Open in IMG/M
3300001867\|JGI12627J18819_10481173	Not Available	510	Open in IMG/M
3300003221\|JGI26294J46811_10126	All Organisms → cellular organisms → Bacteria	508	Open in IMG/M
3300004156\|Ga0062589_100950405	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Haloferacaceae → Halogeometricum → Halogeometricum pallidum	797	Open in IMG/M
3300004480\|Ga0062592_101460482	Not Available	654	Open in IMG/M
3300004633\|Ga0066395_10910468	Not Available	533	Open in IMG/M
3300005093\|Ga0062594_102426828	Not Available	574	Open in IMG/M
3300005167\|Ga0066672_10576569	Not Available	729	Open in IMG/M
3300005329\|Ga0070683_100959397	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales → Halobacteriaceae	821	Open in IMG/M
3300005332\|Ga0066388_100162967	All Organisms → cellular organisms → Bacteria	2821	Open in IMG/M
3300005332\|Ga0066388_100361225	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2099	Open in IMG/M
3300005332\|Ga0066388_101463672	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Actinopolymorphaceae → Actinopolymorpha → Actinopolymorpha cephalotaxi	1192	Open in IMG/M
3300005332\|Ga0066388_102828617	All Organisms → cellular organisms → Bacteria	887	Open in IMG/M
3300005332\|Ga0066388_103296085	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Haloferacaceae → Halogeometricum → Halogeometricum pallidum	825	Open in IMG/M
3300005332\|Ga0066388_104311872	Not Available	725	Open in IMG/M
3300005332\|Ga0066388_106064731	Not Available	610	Open in IMG/M
3300005337\|Ga0070682_100692415	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Haloferacaceae → Halogeometricum → Halogeometricum pallidum	816	Open in IMG/M
3300005367\|Ga0070667_102338569	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	503	Open in IMG/M
3300005434\|Ga0070709_10005421	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	6909	Open in IMG/M
3300005435\|Ga0070714_100009012	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	7815	Open in IMG/M
3300005467\|Ga0070706_100305740	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1483	Open in IMG/M
3300005468\|Ga0070707_100168434	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2135	Open in IMG/M
3300005544\|Ga0070686_100141550	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1675	Open in IMG/M
3300005547\|Ga0070693_100546382	Not Available	828	Open in IMG/M
3300005548\|Ga0070665_100938087	All Organisms → cellular organisms → Bacteria	878	Open in IMG/M
3300005568\|Ga0066703_10144371	Not Available	1428	Open in IMG/M
3300005586\|Ga0066691_10412299	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	804	Open in IMG/M
3300005764\|Ga0066903_100210313	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2928	Open in IMG/M
3300005764\|Ga0066903_101140948	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1441	Open in IMG/M
3300005764\|Ga0066903_103311734	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	870	Open in IMG/M
3300005764\|Ga0066903_106469168	All Organisms → cellular organisms → Bacteria → Terrabacteria group	611	Open in IMG/M
3300005841\|Ga0068863_101381637	Not Available	712	Open in IMG/M
3300006046\|Ga0066652_101065452	Not Available	766	Open in IMG/M
3300006237\|Ga0097621_100959367	Not Available	799	Open in IMG/M
3300006755\|Ga0079222_10674848	Not Available	810	Open in IMG/M
3300006755\|Ga0079222_12429622	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	525	Open in IMG/M
3300006806\|Ga0079220_11995009	All Organisms → cellular organisms → Bacteria	517	Open in IMG/M
3300006854\|Ga0075425_100238698	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2091	Open in IMG/M
3300006854\|Ga0075425_100854071	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1042	Open in IMG/M
3300006871\|Ga0075434_102102363	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	569	Open in IMG/M
3300009012\|Ga0066710_100333838	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	2235	Open in IMG/M
3300009156\|Ga0111538_10223541	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	2386	Open in IMG/M
3300009162\|Ga0075423_11031193	Not Available	874	Open in IMG/M
3300009792\|Ga0126374_10286265	Not Available	1096	Open in IMG/M
3300010043\|Ga0126380_10390904	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1029	Open in IMG/M
3300010154\|Ga0127503_10101223	Not Available	545	Open in IMG/M
3300010154\|Ga0127503_10243914	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2800	Open in IMG/M
3300010154\|Ga0127503_10314297	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Actinopolymorphaceae → Actinopolymorpha → Actinopolymorpha cephalotaxi	970	Open in IMG/M
3300010154\|Ga0127503_10953454	Not Available	1416	Open in IMG/M
3300010359\|Ga0126376_11150591	All Organisms → cellular organisms → Bacteria	788	Open in IMG/M
3300010359\|Ga0126376_12553017	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	559	Open in IMG/M
3300010360\|Ga0126372_10016880	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	4163	Open in IMG/M
3300010360\|Ga0126372_10748333	All Organisms → cellular organisms → Bacteria	961	Open in IMG/M
3300010362\|Ga0126377_10378540	Not Available	1420	Open in IMG/M
3300010373\|Ga0134128_10065253	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	4186	Open in IMG/M
3300010396\|Ga0134126_10627102	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1228	Open in IMG/M
3300012198\|Ga0137364_10727433	Not Available	749	Open in IMG/M
3300012200\|Ga0137382_10395900	Not Available	973	Open in IMG/M
3300012206\|Ga0137380_11186928	Not Available	648	Open in IMG/M
3300012285\|Ga0137370_10748191	All Organisms → cellular organisms → Bacteria	607	Open in IMG/M
3300012354\|Ga0137366_11189090	Not Available	519	Open in IMG/M
3300012901\|Ga0157288_10247859	Not Available	596	Open in IMG/M
3300012915\|Ga0157302_10100490	All Organisms → cellular organisms → Bacteria	912	Open in IMG/M
3300012948\|Ga0126375_10116989	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1616	Open in IMG/M
3300012948\|Ga0126375_11780970	Not Available	537	Open in IMG/M
3300012955\|Ga0164298_10450396	Not Available	847	Open in IMG/M
3300012960\|Ga0164301_10507584	Not Available	871	Open in IMG/M
3300012984\|Ga0164309_10030613	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2948	Open in IMG/M
3300012984\|Ga0164309_11042397	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	677	Open in IMG/M
3300012988\|Ga0164306_10816242	Not Available	752	Open in IMG/M
3300013308\|Ga0157375_10479504	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1409	Open in IMG/M
3300014745\|Ga0157377_10817887	Not Available	688	Open in IMG/M
3300015077\|Ga0173483_10113100	Not Available	1149	Open in IMG/M
3300016357\|Ga0182032_11992141	Not Available	509	Open in IMG/M
3300017937\|Ga0187809_10310435	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	583	Open in IMG/M
3300017966\|Ga0187776_10000203	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	28654	Open in IMG/M
3300018482\|Ga0066669_10656680	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Olpidiomycota → Olpidiomycotina → Olpidiomycetes → Olpidiales → Olpidiaceae → Olpidium → Olpidium bornovanus	923	Open in IMG/M
3300019361\|Ga0173482_10483375	Not Available	597	Open in IMG/M
3300021478\|Ga0210402_10414474	Not Available	1251	Open in IMG/M
3300021560\|Ga0126371_10596260	All Organisms → cellular organisms → Bacteria	1254	Open in IMG/M
3300025905\|Ga0207685_10029358	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1946	Open in IMG/M
3300025910\|Ga0207684_10352096	All Organisms → cellular organisms → Bacteria	1267	Open in IMG/M
3300025916\|Ga0207663_10012186	All Organisms → cellular organisms → Bacteria	4640	Open in IMG/M
3300025916\|Ga0207663_10063033	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2359	Open in IMG/M
3300025922\|Ga0207646_11363084	All Organisms → cellular organisms → Bacteria	618	Open in IMG/M
3300025931\|Ga0207644_10786951	Not Available	795	Open in IMG/M
3300025949\|Ga0207667_12056202	Not Available	530	Open in IMG/M
3300026023\|Ga0207677_10318375	Not Available	1292	Open in IMG/M
3300026088\|Ga0207641_11216148	Not Available	753	Open in IMG/M
3300026095\|Ga0207676_11977648	Not Available	582	Open in IMG/M
3300026816\|Ga0207509_101367	Not Available	1079	Open in IMG/M
3300028802\|Ga0307503_10163945	Not Available	1021	Open in IMG/M
3300031231\|Ga0170824_123008961	Not Available	601	Open in IMG/M
3300031469\|Ga0170819_14097629	Not Available	516	Open in IMG/M
3300031474\|Ga0170818_108993565	Not Available	916	Open in IMG/M
3300031938\|Ga0308175_100064880	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3224	Open in IMG/M
3300032180\|Ga0307471_100882402	All Organisms → cellular organisms → Bacteria	1062	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	84.16%
Host-Associated	Host-Associated	15.84%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	79.21%
Plants	Host-Associated → Plants	15.84%
Aquatic	Environmental → Aquatic	4.95%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	79.21%
Rhizosphere	Host-Associated → Plants → Rhizosphere	9.90%
Freshwater	Environmental → Aquatic → Freshwater	4.95%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.95%
Roots	Host-Associated → Plants → Roots	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	52.48%
Loam	Environmental → Terrestrial → Soil → Loam	25.74%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.93%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.95%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	3.96%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.97%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.99%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.99%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	28.71%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	12.87%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	12.87%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	8.91%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	7.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.93%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	5.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.95%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	3.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.97%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.99%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.99%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.99%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.99%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	11.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	9.90%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	9.90%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	8.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.94%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	4.95%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.95%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	3.96%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.97%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.97%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.98%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	1.98%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.98%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.98%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.99%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.99%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.99%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.99%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.99%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.99%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.99%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.99%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.99%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.99%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459004	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect MP BIO 1O1 lysis 0-21cm (2)	Environmental	Open in IMG/M
2170459022	Grass soil microbial communities from Rothamsted Park, UK - FA2 (control condition)	Environmental	Open in IMG/M
2209111022	Grass soil microbial communities from Rothamsted Park, UK - Chitin enrichment	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300003221	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-SCHO21-B	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012901	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S119-311C-1	Environmental	Open in IMG/M
3300012915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S103-311B-2	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300017937	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_4	Environmental	Open in IMG/M
3300017966	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026816	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-SCHO21-B (SPAdes)	Environmental	Open in IMG/M
3300028802	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
E4B_03163150	2170459004	Grass Soil	MKLSDRIKRWWNPAEWQDEHPVETEGGEGHPLSEEERAEDRRITGGVRAPEPTTDYSDES
FA2_06862650	2170459022	Grass Soil	MSFSDRIKRWWNPAKWKDEHPEVTEGGQGHPLSDEERAEDRHVDSWVRAPESRTDYSDES
2222010156	2209111022	Grass Soil	MNFSDRIKRWWNPAKWKDEHPEVTEGGQGHPLSEEERAEDRHVDSWVRAPESRTDYSDES
JGI10216J12902_1064532504	3300000956	Soil	MKLSDRIKRWWKPAEWKDEHPVETEGGAGHPLTEEERAEDRRITSDVRFPETTTDYSDET
JGI10216J12902_1210313472	3300000956	Soil	MKLSDRIKRWWNPAEWKDEHPVVTEGGSGHPLSEEERAEDRRITSHVRIPETETDYSDET
JGI12627J18819_104811731	3300001867	Forest Soil	MNFSDRIKRWWNPAKWKDEHPEVTEGGQGHPLSEEERGEDRRLTSNVRFPESSTDYSDET
JGI26294J46811_101262	3300003221	Soil	WNPTKWKDEHPEVTEGGEGHPLSEEERGEDRHLTSNVRFPESSTDYSDEA*
Ga0062589_1009504051	3300004156	Soil	KRWWSPAEWKDAHPVETKGGAGHPLTEEERAEDRRITSDVRFPETTTDYSDET*
Ga0062592_1014604822	3300004480	Soil	MKLSDRIKRWWKPAEWKDEHPVETEGGAGHPLTDEERAEDRRITSDVRFPETETDYSDET
Ga0066395_109104682	3300004633	Tropical Forest Soil	MKLSERIKRWWKPAEWKDEHPVETEGGEGHPLTEEERAEDRRITGYVRNPETSTDYSDET
Ga0062594_1024268281	3300005093	Soil	MTKLSDRIKRWWSPAEWKDEHPVETEGGAGHPLTEEERAEDRRITSDVRFPETTTDYSDET*
Ga0066672_105765692	3300005167	Soil	MKLSDLIKRWWNPAEWRDEHPQVTEGGEGHPLSDEERAEDRRITGGTRVPETSTDYSDET
Ga0070683_1009593973	3300005329	Corn Rhizosphere	MTKLSDRIKRWWSPAEWKDEHPVETKGGAGHPLTEEERAEDRRITSDVRFPETTTDYSDET*
Ga0066388_1001629671	3300005332	Tropical Forest Soil	MNLSDRIKRWWNPAKWKDEHPEVTEGGEGHPLTEAERAEDRHIDSWTRAPETRTDYSDET
Ga0066388_1003612254	3300005332	Tropical Forest Soil	MKLSDRIRRWWAPANWRDEHPEVTEGGEGHPLSAEERSEDRRMTSDVRFPETKTDYSDEE
Ga0066388_1014636722	3300005332	Tropical Forest Soil	MKLSDRIKRWWKPAVWKDEHPVVTEGGEGHPLSEEERAEDREITGYVRSPETKTDYSDET
Ga0066388_1028286172	3300005332	Tropical Forest Soil	MKLSDRIRRWWSPAKWRDEHPEVTEGGEGHPLSEEERAEDRRITSDVRFPETETDYSDET
Ga0066388_1032960851	3300005332	Tropical Forest Soil	MKLSDRIKRWWSPAEWKDEHPVETEGSEGHPLTEQERAEDRRITSHVRDPETTTDYADEA
Ga0066388_1043118722	3300005332	Tropical Forest Soil	MKLSDRIKRWWAPAEWRDEHPEVTEGGEGHPLSAEERAEDRRMSSHIQIPETETDYSDEA
Ga0066388_1060647312	3300005332	Tropical Forest Soil	DRIKRWWNPAQWQDDHPEVTEGGEGHPLSEEERAEGSRHIDSWVRNPETSTDYTDES*
Ga0070682_1006924153	3300005337	Corn Rhizosphere	KLSDRIKRWWSPAEWKDEHPVETKGGAGHPLTEEERAEDRRITSDVRFPETTTDYSDET*
Ga0070667_1023385691	3300005367	Switchgrass Rhizosphere	IQMTKLSDRIKRWWSPAEWKDEHPVETEGGAGHPLTEEERAEDRRITSDVRFPETTTDYSDET*
Ga0070709_100054214	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MNFSDRIKRWWNPANWKDEHPEVTEGGEGHPLSEEERGEDRHLTSNVRFPESSTDYSDEA
Ga0070714_1000090125	3300005435	Agricultural Soil	MNFSDRIKRWWNPAKWKDEHHEVTEGGEGHPLSEEERGEDRHLTSNVRFPESSTDYSDEA
Ga0070706_1003057403	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	EHPEVTEGGEGHPLSEEERGEDRHLTSNVRFPESSTDYSDEA*
Ga0070707_1001684341	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	ECVQVMNFSDRIKRWWNPAKWKDEHPEVTEGGEGHPLSEEERGEDRHLTSNVRFPESSTDYSDEA*
Ga0070686_1001415503	3300005544	Switchgrass Rhizosphere	MKLSDRIKRWWSPAEWKDEHAVETEGGAGHPLTEEERAEDRRITSDVRFPETTTDYSDET
Ga0070693_1005463821	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MKLSDRIKRWWKPAEWKDEHPVETEGGAGHPLTDEERAEDRRITSDVRFPE
Ga0070665_1009380871	3300005548	Switchgrass Rhizosphere	AYVVGWEGPDRGECVQVMNFSDRIKRWWNPAKWKDEHPEVTEGGEGHPLSEEERGEDRHLTSNVRFPESSTDYSDEA*
Ga0066703_101443712	3300005568	Soil	MKLSDLIKRWWNPAKWQDEHPEVTEGGEGHPLSDEERAEDRRITGGTRVPETSTDYSDET
Ga0066691_104122991	3300005586	Soil	CVPVMKLSDLIKRWWNPAEWRDEHPQVTEGGEGHPLSDEERAEDRRITGGTRVPETSTDYSDET*
Ga0066903_1002103132	3300005764	Tropical Forest Soil	VKLSDRIRRWWAPAKWRDEHPVVTEGGEGHPLTEQERAEDRRITSPGVRAPETSTDYSDEA*
Ga0066903_1011409482	3300005764	Tropical Forest Soil	MKLSDRIKRWWSPAEWKDEHPVETEGGEGHPLTEQERAEDRRITSHVREPETSTDYSDED
Ga0066903_1033117343	3300005764	Tropical Forest Soil	MKLSERIKRWWKPAEWKDEHPVETEGGEGHPLTDEERAEDRRITGYVRDPETSTDYSDET
Ga0066903_1064691682	3300005764	Tropical Forest Soil	MKLSDRIRRWWNPAEWKDEHPVETEGGEGHSLTEQERAEDRRITSHVREPETSTDYSDEA
Ga0068863_1013816372	3300005841	Switchgrass Rhizosphere	MKFSDRIKRWWNPTKWKDEHPEVTEGGEGHPLSEEERGEDRHLTSNVRLPESSTDY
Ga0066652_1010654522	3300006046	Soil	MKLTDRIKRWWKPAQWQDEHPQVTEGGEGHPLSEEERAEGSRHIDSWVRNPETSTDYADES*
Ga0097621_1009593672	3300006237	Miscanthus Rhizosphere	MKLSDRIKRWWSPAEWKDEHPVETEGGAGHPLTEEERAEDRRITSDVRFPETTTDYSDET
Ga0079222_106748482	3300006755	Agricultural Soil	MKLGDRIKRWWNPAQWKDEHPEVTEGGEGHPLSKEERDEDRRITSDVRFPETQTDYSDET
Ga0079222_124296222	3300006755	Agricultural Soil	MNLSDRIKRWWSPAKWKDEHPEVTEGGEGHPLSEAERAEDRHVDSWVRAPETTTDYSDES
Ga0079220_119950091	3300006806	Agricultural Soil	GPHRRECIPMKLGDRIKRWWNPAQWKDEHPEVTEGGEGHPLSKEERDEDRRITSDVRFPETQTDYSDET*
Ga0075425_1002386984	3300006854	Populus Rhizosphere	RRECVQIMKLSDRIKRWWNPADWKDEHPEVTEGGEGHPLTEAERAEDRHVTGWVRAPETDTSYSDET*
Ga0075425_1008540712	3300006854	Populus Rhizosphere	MKLSDRIKRWWKPAEWKDEHPVETEGGAGHPLTDEERAEDRRIASDVRFPETETDYSDET
Ga0075434_1021023632	3300006871	Populus Rhizosphere	MNLSDRIKRWWSPAKWKDEHPEVTEGGEGHPLSEAERAENRHVDSWVRDPETSTDYSDES
Ga0066710_1003338382	3300009012	Grasslands Soil	MKLSDLIKRWWSPARWRDEHPQVTEGGEGHPLSEEERAEDRRLSFGTVNPETSPDYSDEE
Ga0111538_102235411	3300009156	Populus Rhizosphere	MKLSDRIKRWWKPAEWKDEHPVETEGGAGHPLTDEERAEDRRITRGVRFPETETDYS
Ga0075423_110311932	3300009162	Populus Rhizosphere	MKLSDRIKRWWKPAEWKEEHPVETEGGAGHPLTEEERAEDRRITSDVRFPETKTDYSDET
Ga0126374_102862652	3300009792	Tropical Forest Soil	MKFSERIKRWWKPAEWKDEHPVETEGGEGHPLTEEERAEDRRITGYVRDPETSTDYSDET
Ga0126380_103909042	3300010043	Tropical Forest Soil	MKLSDRIKRWWAPAKWRDEHPEVTEGGQGHPLSEAERAEDRRMTSDVRFPETKTDYSDEE
Ga0127503_101012232	3300010154	Soil	MKLSDRIKRWWNPAKWQDEHPVETEGGEGHPLSDEERAEDRRITGNVRFPETTTDYSDET
Ga0127503_102439144	3300010154	Soil	MKLPDRIRRWWAPAKWRDEHPEVTEGGEGHPLTEEERGEDRTITSDVRFPETKTDYSDEA
Ga0127503_103142972	3300010154	Soil	MKLSDRIRRWWAPAKWRDEHPEVTEGGEGHPLSEEERGEDRRITSDVRFPE
Ga0127503_109534542	3300010154	Soil	MKLSDRIRRWWGPAKWRDEHPEVTEGGEGHPLSEEERGEDRRITSDVRFPETRTDYSDET
Ga0126376_111505912	3300010359	Tropical Forest Soil	MKLSDRIKRWWNPAQWQDDHPEVTEGGEGHPLSEEERAEGSRHIDSWVRNPETSTDYTDES*
Ga0126376_125530171	3300010359	Tropical Forest Soil	RWWKPAEWKDEHPVETEGGEGHPLTEEERAEDRRITGYVRDPETSTDYSDET*
Ga0126372_100168802	3300010360	Tropical Forest Soil	MKFSERIKRWWKPAEWKDEHPVETEGGEGHPLTEEERAEDRRITGYVRNPETSTDYSDET
Ga0126372_107483332	3300010360	Tropical Forest Soil	MKLSDRIRRWWSPAKWRDEHPEVTEGGEGHPLSAEERAEDRRITSDVRFPETETDYSDET
Ga0126377_103785403	3300010362	Tropical Forest Soil	MKLSDRIKRWWKPAEWRDEHPVETEGGEGHPLTEQERAEDRRITSNVQVPETKTDYSDET
Ga0134128_100652533	3300010373	Terrestrial Soil	MNFSDRIKRWWNPANWKDEHPEVTEGGEGHPLSEEERGEDRHLTSNVRLPESSTDYSDEA
Ga0134126_106271022	3300010396	Terrestrial Soil	MKLSDRIKRWWSPAEWKDEHAVETEGGAGHPLTDEERAEDRRITSDVRFPETETDYSDET
Ga0137364_107274332	3300012198	Vadose Zone Soil	MKLTDRIKRWWKPAQWQDEHPQVTEGGEGHPLSEEERAEGSRHIDSWVRNPETSTDYTDES*
Ga0137382_103959002	3300012200	Vadose Zone Soil	MSFSDRIKRWWNPAKWKDEHPEVTEGGEGHPLSEEERADDRHIDSWVRAPESRTDYSDET
Ga0137380_111869282	3300012206	Vadose Zone Soil	MKLSDLIKRWWNPAEWRDEHPEVTEGGEGHPLSEEERIEDRRITGGTRVP
Ga0137370_107481911	3300012285	Vadose Zone Soil	GGESVDRRERLQMKLTDRIKRWWKPAQWQDEHPQVTEGGEGHPLSEEERAEGSRHIDSWVRNPETSTDYTDES*
Ga0137366_111890902	3300012354	Vadose Zone Soil	MKLSDLIKRWWNPAEWRDEHPQVTEGGEGHPLSEEERAEDRRITGGTLVPETSTDYSDET
Ga0157288_102478591	3300012901	Soil	MKLSDRIKRWWNPAEWKDEHPVETEGGAGHPLTEEERAEDRRITSDVRFPETTTDYSDET
Ga0157302_101004902	3300012915	Soil	MKLTDRIKRWWNPAHWKDEHPEVTEGGEGHPLSEEERAEGSRHIDSWVRNPETSTDYSDES*
Ga0126375_101169892	3300012948	Tropical Forest Soil	MKLSERIRRWWKPAEWKDEHPVETEGGEGHPLTEEERAEDRRITGYVRAPETSTDYSDET
Ga0126375_117809702	3300012948	Tropical Forest Soil	MKLSDRIKRWWAPAEWRDEHPEVTEGGEGHPLSAEERAEDRRMSSHIQIPETETHYSDEA
Ga0164298_104503962	3300012955	Soil	MKLSDRIKRWWSPAEWKDEHPVETEGGAGHPLTEEERAEDRRITSDVRFPETGTDYSDET
Ga0164301_105075842	3300012960	Soil	MKLSDRIKRWWNPAEWKDEHPVETEGGAGHPLTEEERAEDRRITSDVRFPETGTDYSDET
Ga0164309_100306135	3300012984	Soil	VMNFSDRIKRWWNPAKWKDEHPEVTEGGEGHPLSEEERGEDRHLTSNVRFPESSTDYSDEA*
Ga0164309_110423972	3300012984	Soil	VTQLSDRIKRWWSPAEWKDEHPVETEGGAGHPLTEEERAEDRRITSDVRFPETGTDYSDET*
Ga0164306_108162422	3300012988	Soil	MKLSDRIKRWWNPAEWKDEHPVETEGGAGHPLTEEERAEDRRITSDVRFPETETDYSDET
Ga0157375_104795042	3300013308	Miscanthus Rhizosphere	MTKLSDRIKRWWSPAEWKDAHPVETKGGAGHPLTEEERAEDRRITSDVRFPETTTDYSDET*
Ga0157377_108178871	3300014745	Miscanthus Rhizosphere	DRIKRWWNPAKWRDDHPEVTEGGEGHPLSEEERGEDRHLTSNVRFPESSTDYSDEA*
Ga0173483_101131003	3300015077	Soil	MKLSDRIKRWWNPAEWKDEHPVETEGGAGHPLTDEERAEDRRITSDVRFPETETDYSDET
Ga0182032_119921412	3300016357	Soil	MKLSDRIKRWWAPAKWQDEHPEVTEGGEGHPLSAEERSEDRRLTSDVRFPETQTDYSDES
Ga0187809_103104351	3300017937	Freshwater Sediment	ARGAHALGRQGADRRERVPLVKVSDRIKRWWNPRKWQDEHPVVTEGGEGHPLTEQERSEDRRITSHIREPETSTDYSDEA
Ga0187776_1000020323	3300017966	Tropical Peatland	MNLSDRIKRWWNPAKWKDEHPEVTEGGQGHPLSEEERSEDRHIDSWTRAPETRTDYSDEG
Ga0066669_106566802	3300018482	Grasslands Soil	MKLTNRIKRWWKPAQWQDEHPQVTEGGEGHPLSEEERAEGSRHIDSWVRNPETSTDYTDE
Ga0173482_104833751	3300019361	Soil	MKLSDRIKRWWSPAEWKDAHPVETKGGAGHPLTEEERAEDRRITSDVRFPETTTDYSDE
Ga0210402_104144742	3300021478	Soil	MKLSERIKRWWNPAEWRDEHPVETEGGEGHPLSAEERSEDRRITGDVRFPESTTDYSDEA
Ga0126371_105962601	3300021560	Tropical Forest Soil	QVMKLSDRIRRWWSPAKWRDEHPEVTEGGEGHPLSEEERAEDRRITSDVRFPETETDYSDET
Ga0207685_100293584	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	KRWWNPAKWKDEHPEVTEGGEGHPLSEEERGEDRHLTSNVRFPESSTDYSDEA
Ga0207684_103520961	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	EHPEVTEGGEGHPLSEEERGEDRHLTSNVRFPESSTDYSDEA
Ga0207663_100121867	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MNFSDRIKRWWNPAKWKDEHPEVTEGGEGHPLSEEERGEDRHLTSNVRF
Ga0207663_100630331	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	DRIRRWWNPAKWKDEHPEVTEGGEGHPLSEEERGEDRHLTSNVRFPESSTDYSDEA
Ga0207646_113630842	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MNLSDRIKRWWNPAKWKDEHPEVTEGGQGHPLSEEERAEDRHVDSWVRAPESRTDYSDES
Ga0207644_107869512	3300025931	Switchgrass Rhizosphere	MNFSDRIRRWWNPAKWKDEHPEVTEGGEGHPLSEEERGEDRHLTSNVRFPESSTDYSDEA
Ga0207667_120562021	3300025949	Corn Rhizosphere	MTKLSDRIKRWWSPAEWKDEHPVETKGGAGHPLTEEERAEDRRITSDVRFPET
Ga0207677_103183752	3300026023	Miscanthus Rhizosphere	MTKLSDRIKRWWSPAEWKDAHPVETKGGAGHPLTEEERAEDRRITSDVRFPETTTDYSDE
Ga0207641_112161482	3300026088	Switchgrass Rhizosphere	MKFSDRIKRWWNPTKWKDEHPEVTEGGEGHPLSEEERGEDRHLTSNVRLPESSTDYSDEA
Ga0207676_119776481	3300026095	Switchgrass Rhizosphere	MTKLSDRIKRWWSPAEWKDEHPVETKGGAGHPLTEEERAEDRRITSDVRFPETTTDYSD
Ga0207509_1013672	3300026816	Soil	MKFSDRIKRWWNPTKWKDEHPEVTEGGEGHPLSEEERGEDRHLTSNVRFPESSTDYSDEA
Ga0307503_101639452	3300028802	Soil	MSLSDRIKRWWSPAEWRDEHPEVTEGGEGHPLTEAERAEDRHITSWVRDPETSTDHSDES
Ga0170824_1230089611	3300031231	Forest Soil	MNFSDRIKRWWNPAKWKDEHPEVTEGGQGHPLSEEERAEDRHIDSWVRAPESRTDYSDES
Ga0170819_140976292	3300031469	Forest Soil	MNFSARIKRWWNPAKWKDEHPEVTEGGQGHPLSEEERAEDRHVDSWVRAPESRTDYSDES
Ga0170818_1089935652	3300031474	Forest Soil	MNFSARIKRWWNPAKWKDEHPEVTEGGHGHPLSEEEREEDRHVDSWVRAPESRTDYSDE
Ga0308175_1000648802	3300031938	Soil	MRLSDRIKRWWNPAEWRDEHPEVTEGGEGHPLSEAERAEDRHITSWVRDPETSTDHSDES
Ga0307471_1008824022	3300032180	Hardwood Forest Soil	MKVSDLIKRWWNPAEWRDEHPQVTEGGEGHPLSEQERAEDRRITSDVRFPETTTDYSDET

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F103459

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences