NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome Family F103444

Metagenome Family F103444

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F103444
Family Type Metagenome
Number of Sequences 101
Average Sequence Length 108 residues
Representative Sequence VRNSLVAALVSCADQPLKSTARRFLAGLSSDELQFIAEFLGSCVLESQVRCARNRAEIAERIARFQQARADRARMRSTDQELKMILLLEYLCRSGVQEFSMPARAAGPSVN
Number of Associated Samples 83
Number of Associated Scaffolds 101

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 70.30 %
% of genes near scaffold ends (potentially truncated) 35.64 %
% of genes from short scaffolds (< 2000 bps) 85.15 %
Associated GOLD sequencing projects 71
AlphaFold2 3D model prediction Yes
3D model pTM-score0.39

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (100.000 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil
(16.832 % of family members)
Environment Ontology (ENVO) Unclassified
(24.752 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(51.485 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 56.12%    β-sheet: 0.00%    Coil/Unstructured: 43.88%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.39
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 101 Family Scaffolds
PF11950DUF3467 59.41
PF00251Glyco_hydro_32N 9.90
PF13470PIN_3 0.99
PF00294PfkB 0.99
PF00873ACR_tran 0.99
PF17132Glyco_hydro_106 0.99
PF13592HTH_33 0.99
PF12848ABC_tran_Xtn 0.99
PF14534DUF4440 0.99
PF00005ABC_tran 0.99
PF01209Ubie_methyltran 0.99

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 101 Family Scaffolds
COG1621Sucrose-6-phosphate hydrolase SacC, GH32 familyCarbohydrate transport and metabolism [G] 9.90
COG2152Predicted glycosyl hydrolase, GH43/DUF377 familyCarbohydrate transport and metabolism [G] 9.90
COG3507Beta-xylosidaseCarbohydrate transport and metabolism [G] 9.90
COG2226Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenGCoenzyme transport and metabolism [H] 0.99
COG22272-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylaseCoenzyme transport and metabolism [H] 0.99


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms100.00 %
UnclassifiedrootN/A0.00 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2170459010|GIO7OMY01B54EGAll Organisms → cellular organisms → Bacteria → Acidobacteria501Open in IMG/M
3300001870|JGI24129J20441_1015495All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus2189Open in IMG/M
3300002569|JGI24136J36422_10061589All Organisms → cellular organisms → Bacteria → Acidobacteria1077Open in IMG/M
3300003369|JGI24140J50213_10192383All Organisms → cellular organisms → Bacteria → Acidobacteria638Open in IMG/M
3300005329|Ga0070683_101554418All Organisms → cellular organisms → Bacteria → Acidobacteria636Open in IMG/M
3300005331|Ga0070670_100971786All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium772Open in IMG/M
3300005334|Ga0068869_100403600All Organisms → cellular organisms → Bacteria → Acidobacteria1125Open in IMG/M
3300005367|Ga0070667_100826484All Organisms → cellular organisms → Bacteria → Acidobacteria861Open in IMG/M
3300005457|Ga0070662_101992901All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium502Open in IMG/M
3300005563|Ga0068855_100959908All Organisms → cellular organisms → Bacteria → Acidobacteria900Open in IMG/M
3300005564|Ga0070664_100689183All Organisms → cellular organisms → Bacteria → Acidobacteria951Open in IMG/M
3300005618|Ga0068864_102479645All Organisms → cellular organisms → Bacteria → Acidobacteria525Open in IMG/M
3300005841|Ga0068863_100016011All Organisms → cellular organisms → Bacteria → Proteobacteria7191Open in IMG/M
3300005843|Ga0068860_100533165All Organisms → cellular organisms → Bacteria1175Open in IMG/M
3300005938|Ga0066795_10006792All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae3013Open in IMG/M
3300005938|Ga0066795_10112896All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium809Open in IMG/M
3300005938|Ga0066795_10179933All Organisms → cellular organisms → Bacteria → Acidobacteria630Open in IMG/M
3300006050|Ga0075028_100934349All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium536Open in IMG/M
3300006055|Ga0097691_1005783All Organisms → cellular organisms → Bacteria6939Open in IMG/M
3300006055|Ga0097691_1026528All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae2370Open in IMG/M
3300006086|Ga0075019_10595011All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium693Open in IMG/M
3300006237|Ga0097621_101896970All Organisms → cellular organisms → Bacteria → Acidobacteria569Open in IMG/M
3300006358|Ga0068871_100682623All Organisms → cellular organisms → Bacteria → Acidobacteria940Open in IMG/M
3300006358|Ga0068871_100846440All Organisms → cellular organisms → Bacteria845Open in IMG/M
3300006642|Ga0075521_10313459All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium756Open in IMG/M
3300006795|Ga0075520_1020513All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae3307Open in IMG/M
3300006795|Ga0075520_1100518All Organisms → cellular organisms → Bacteria1312Open in IMG/M
3300006795|Ga0075520_1165898All Organisms → cellular organisms → Bacteria → Acidobacteria955Open in IMG/M
3300006864|Ga0066797_1039349All Organisms → cellular organisms → Bacteria → Proteobacteria1665Open in IMG/M
3300006864|Ga0066797_1043335All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia1584Open in IMG/M
3300006871|Ga0075434_102203086All Organisms → cellular organisms → Bacteria → Acidobacteria555Open in IMG/M
3300009029|Ga0066793_10165685All Organisms → cellular organisms → Bacteria → Acidobacteria1288Open in IMG/M
3300009029|Ga0066793_10174903All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA41251Open in IMG/M
3300009029|Ga0066793_10307530All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium916Open in IMG/M
3300009029|Ga0066793_10313399All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium906Open in IMG/M
3300009098|Ga0105245_11838788All Organisms → cellular organisms → Bacteria → Acidobacteria659Open in IMG/M
3300009176|Ga0105242_10448049All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia1216Open in IMG/M
3300009177|Ga0105248_10076106All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae3772Open in IMG/M
3300009548|Ga0116107_1103069All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium846Open in IMG/M
3300009553|Ga0105249_11938099All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium662Open in IMG/M
3300010375|Ga0105239_12912721All Organisms → cellular organisms → Bacteria → Acidobacteria558Open in IMG/M
3300010379|Ga0136449_100032354All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia12573Open in IMG/M
3300010401|Ga0134121_11999279All Organisms → cellular organisms → Bacteria → Acidobacteria612Open in IMG/M
3300011119|Ga0105246_11164950All Organisms → cellular organisms → Bacteria707Open in IMG/M
3300012986|Ga0164304_10861903All Organisms → cellular organisms → Bacteria → Acidobacteria705Open in IMG/M
3300014490|Ga0182010_10496795All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium674Open in IMG/M
3300014491|Ga0182014_10112353All Organisms → cellular organisms → Bacteria → Acidobacteria1612Open in IMG/M
3300014494|Ga0182017_10039043All Organisms → cellular organisms → Bacteria3197Open in IMG/M
3300014496|Ga0182011_10757826All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium610Open in IMG/M
3300014498|Ga0182019_10124849All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus1604Open in IMG/M
3300014839|Ga0182027_12003088All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium554Open in IMG/M
3300014839|Ga0182027_12184984All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium526Open in IMG/M
3300015371|Ga0132258_11518840All Organisms → cellular organisms → Bacteria → Acidobacteria1691Open in IMG/M
3300015374|Ga0132255_101677670All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus964Open in IMG/M
3300016270|Ga0182036_11055347All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium671Open in IMG/M
3300016357|Ga0182032_11507653All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium584Open in IMG/M
3300016445|Ga0182038_10750441All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia853Open in IMG/M
3300017792|Ga0163161_12044373All Organisms → cellular organisms → Bacteria → Acidobacteria510Open in IMG/M
3300018023|Ga0187889_10465779All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium541Open in IMG/M
3300018083|Ga0184628_10067317All Organisms → cellular organisms → Bacteria → Acidobacteria1818Open in IMG/M
3300019787|Ga0182031_1164866All Organisms → cellular organisms → Bacteria → Acidobacteria697Open in IMG/M
3300021478|Ga0210402_10508997All Organisms → cellular organisms → Bacteria → Acidobacteria1118Open in IMG/M
3300022756|Ga0222622_10130151All Organisms → cellular organisms → Bacteria → Acidobacteria1596Open in IMG/M
3300023091|Ga0224559_1006728All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus5341Open in IMG/M
3300023091|Ga0224559_1014083All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus3488Open in IMG/M
3300025481|Ga0208079_1000666All Organisms → cellular organisms → Bacteria → Acidobacteria18694Open in IMG/M
3300025495|Ga0207932_1060349All Organisms → cellular organisms → Bacteria → Acidobacteria828Open in IMG/M
3300025579|Ga0207927_1034362All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia1419Open in IMG/M
3300025650|Ga0209385_1136921All Organisms → cellular organisms → Bacteria → Acidobacteria744Open in IMG/M
3300025650|Ga0209385_1152837All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium683Open in IMG/M
3300025650|Ga0209385_1192174All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium572Open in IMG/M
3300025725|Ga0209638_1010496All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus4883Open in IMG/M
3300025878|Ga0209584_10407311All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium525Open in IMG/M
3300025903|Ga0207680_10303586All Organisms → cellular organisms → Bacteria → Acidobacteria1113Open in IMG/M
3300025925|Ga0207650_10211733All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus1557Open in IMG/M
3300025930|Ga0207701_11530977All Organisms → cellular organisms → Bacteria → Acidobacteria539Open in IMG/M
3300025936|Ga0207670_10302065All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus1253Open in IMG/M
3300025941|Ga0207711_10056585All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus3370Open in IMG/M
3300025942|Ga0207689_10226042All Organisms → cellular organisms → Bacteria → Acidobacteria1547Open in IMG/M
3300026095|Ga0207676_10180727All Organisms → cellular organisms → Bacteria → Acidobacteria1847Open in IMG/M
3300026273|Ga0209881_1069871All Organisms → cellular organisms → Bacteria → Acidobacteria868Open in IMG/M
3300029984|Ga0311332_11721064All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium510Open in IMG/M
3300029987|Ga0311334_11341003All Organisms → cellular organisms → Bacteria → Acidobacteria603Open in IMG/M
3300029990|Ga0311336_12040728All Organisms → cellular organisms → Bacteria → Acidobacteria509Open in IMG/M
3300030838|Ga0311335_10959613All Organisms → cellular organisms → Bacteria → Acidobacteria609Open in IMG/M
3300031057|Ga0170834_105504699All Organisms → cellular organisms → Bacteria → Acidobacteria820Open in IMG/M
3300031231|Ga0170824_121043679All Organisms → cellular organisms → Bacteria → Acidobacteria576Open in IMG/M
3300031232|Ga0302323_101328733All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium806Open in IMG/M
3300031250|Ga0265331_10239781All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium814Open in IMG/M
3300031446|Ga0170820_17490291All Organisms → cellular organisms → Bacteria → Acidobacteria566Open in IMG/M
3300031722|Ga0311351_10825312All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium708Open in IMG/M
3300031726|Ga0302321_100658554All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia1171Open in IMG/M
3300031726|Ga0302321_101074559All Organisms → cellular organisms → Bacteria919Open in IMG/M
3300031726|Ga0302321_101423660All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus798Open in IMG/M
3300031726|Ga0302321_102167878All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium647Open in IMG/M
3300031821|Ga0318567_10420889All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium757Open in IMG/M
3300031954|Ga0306926_11460303All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia791Open in IMG/M
3300032160|Ga0311301_10038237All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus11770Open in IMG/M
3300034125|Ga0370484_0148852All Organisms → cellular organisms → Bacteria → Acidobacteria628Open in IMG/M
3300034281|Ga0370481_0279384All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium603Open in IMG/M
3300034281|Ga0370481_0343253All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium546Open in IMG/M



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Arctic Peat SoilEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil16.83%
FenEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Fen9.90%
FenEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Fen5.94%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Soil5.94%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil3.96%
Prmafrost SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil3.96%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere3.96%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere3.96%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil2.97%
Untreated Peat SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil2.97%
Miscanthus RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere2.97%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere2.97%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere2.97%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds1.98%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil1.98%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil1.98%
BogEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Bog1.98%
SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Soil1.98%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere1.98%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere1.98%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere1.98%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland0.99%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland0.99%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment0.99%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment0.99%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.99%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil0.99%
Grass SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil0.99%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere0.99%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere0.99%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere0.99%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere0.99%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.99%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere0.99%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.99%
RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere0.99%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2170459010Grass soil microbial communities from Rothamsted Park, UK - December 2009 direct MP BIO1O1 lysis 0-9cm (no DNA from 10 to 21cm!!!)EnvironmentalOpen in IMG/M
3300001870Arctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0002-211EnvironmentalOpen in IMG/M
3300002569Arctic peat soil from Barrow, Alaska, USA - Barrow Graham LP Ref core NGADG0011-212EnvironmentalOpen in IMG/M
3300003369Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 002-22AEnvironmentalOpen in IMG/M
3300005329Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaGEnvironmentalOpen in IMG/M
3300005331Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaGHost-AssociatedOpen in IMG/M
3300005334Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2Host-AssociatedOpen in IMG/M
3300005367Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaGHost-AssociatedOpen in IMG/M
3300005457Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaGHost-AssociatedOpen in IMG/M
3300005563Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2Host-AssociatedOpen in IMG/M
3300005564Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaGHost-AssociatedOpen in IMG/M
3300005618Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2Host-AssociatedOpen in IMG/M
3300005841Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2Host-AssociatedOpen in IMG/M
3300005843Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2Host-AssociatedOpen in IMG/M
3300005938Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 2 DNA2013-191EnvironmentalOpen in IMG/M
3300006050Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014EnvironmentalOpen in IMG/M
3300006055Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 deep-072012EnvironmentalOpen in IMG/M
3300006086Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013EnvironmentalOpen in IMG/M
3300006237Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)Host-AssociatedOpen in IMG/M
3300006358Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2Host-AssociatedOpen in IMG/M
3300006642Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-DEnvironmentalOpen in IMG/M
3300006795Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-BEnvironmentalOpen in IMG/M
3300006864Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 3 DNA2013-193EnvironmentalOpen in IMG/M
3300006871Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3Host-AssociatedOpen in IMG/M
3300009029Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 1 DNA2013-189EnvironmentalOpen in IMG/M
3300009098Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaGHost-AssociatedOpen in IMG/M
3300009176Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaGHost-AssociatedOpen in IMG/M
3300009177Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaGHost-AssociatedOpen in IMG/M
3300009548Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_100EnvironmentalOpen in IMG/M
3300009553Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaGHost-AssociatedOpen in IMG/M
3300010375Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaGHost-AssociatedOpen in IMG/M
3300010379Sb_50d combined assemblyEnvironmentalOpen in IMG/M
3300010401Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1EnvironmentalOpen in IMG/M
3300011119Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaGHost-AssociatedOpen in IMG/M
3300012986Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MGEnvironmentalOpen in IMG/M
3300014490Permafrost microbial communities from Stordalen Mire, Sweden - 611E1M metaGEnvironmentalOpen in IMG/M
3300014491Permafrost microbial communities from Stordalen Mire, Sweden - 612S2D metaGEnvironmentalOpen in IMG/M
3300014494Permafrost microbial communities from Stordalen Mire, Sweden - 712E3D metaGEnvironmentalOpen in IMG/M
3300014496Permafrost microbial communities from Stordalen Mire, Sweden - 711E1D metaGEnvironmentalOpen in IMG/M
3300014498Permafrost microbial communities from Stordalen Mire, Sweden - 812E2M metaGEnvironmentalOpen in IMG/M
3300014839Permafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300015374Col-0 rhizosphere combined assemblyHost-AssociatedOpen in IMG/M
3300016270Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080EnvironmentalOpen in IMG/M
3300016357Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000EnvironmentalOpen in IMG/M
3300016445Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108EnvironmentalOpen in IMG/M
3300017792Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaGHost-AssociatedOpen in IMG/M
3300018023Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_100EnvironmentalOpen in IMG/M
3300018083Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1EnvironmentalOpen in IMG/M
3300019787Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (PacBio error correction)EnvironmentalOpen in IMG/M
3300021478Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-MEnvironmentalOpen in IMG/M
3300022756Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1EnvironmentalOpen in IMG/M
3300023091Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 30-34EnvironmentalOpen in IMG/M
3300025481Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 deep-092012 (SPAdes)EnvironmentalOpen in IMG/M
3300025495Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-2 deep-092012 (SPAdes)EnvironmentalOpen in IMG/M
3300025579Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 deep-072012 (SPAdes)EnvironmentalOpen in IMG/M
3300025650Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-B (SPAdes)EnvironmentalOpen in IMG/M
3300025725Arctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0002-211 (SPAdes)EnvironmentalOpen in IMG/M
3300025878Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-D (SPAdes)EnvironmentalOpen in IMG/M
3300025903Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025925Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025930Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)EnvironmentalOpen in IMG/M
3300025936Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025941Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025942Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026095Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026273Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 3 DNA2013-193 (SPAdes)EnvironmentalOpen in IMG/M
3300029984I_Fen_E1 coassemblyEnvironmentalOpen in IMG/M
3300029987I_Fen_E3 coassemblyEnvironmentalOpen in IMG/M
3300029990I_Fen_N2 coassemblyEnvironmentalOpen in IMG/M
3300030838I_Fen_N1 coassemblyEnvironmentalOpen in IMG/M
3300031057Oak Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031231Coassembly Site 11 (all samples) - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031232Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_3EnvironmentalOpen in IMG/M
3300031250Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaGHost-AssociatedOpen in IMG/M
3300031446Fir Summer Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031722II_Fen_N3 coassemblyEnvironmentalOpen in IMG/M
3300031726Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_1EnvironmentalOpen in IMG/M
3300031821Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20EnvironmentalOpen in IMG/M
3300031954Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)EnvironmentalOpen in IMG/M
3300032160Sb_50d combined assembly (MetaSPAdes)EnvironmentalOpen in IMG/M
3300034125Peat soil microbial communities from wetlands in Alaska, United States - Sheep_creek_tus_01_15EnvironmentalOpen in IMG/M
3300034281Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_03D_15EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
F62_083529902170459010Grass SoilVRNSLVAALVACADQPLKPKARRFLAGLSSDELQFIAEFLGSCILESQGRCAGDRAELAERIARFQRARADRSRKIARDQELKMILLLEYLCCSGIQKLSMAVR
JGI24129J20441_101549523300001870Arctic Peat SoilVRNSLVAALVSCADQPLKSTARRFLAGLSSDELQFIAEFLGSCVLESQVRCARNRAEIAERIARFQQARADRARMRSTDQELKMILLLEYLCRSGVQEFSMPPRAAGPSVN*
JGI24136J36422_1006158923300002569Arctic Peat SoilVRNSLVAALVSCADQPLKSTARRFLAGLSSDELXFIAEFLGSCVLESQVRCARNRAEIAERIARFQQARADRARMRSTDQELKMILLLEYLCRSGVQEFSMPARAAGPSVN*
JGI24140J50213_1019238323300003369Arctic Peat SoilVRNTLVAALVACADQPLKSEARRFLAGLSSDELQFIAEFLGSCVLESQVRCAPNRAELAERIARFQKARADRARMHTTDQELKMILLLEYLCRSGVQ
Ga0070683_10155441813300005329Corn RhizosphereVRNSLVAALVACADQPLKAKARRFLAGLSSDELQFIAEFLGSCILESQARSARDRAELAERIARFQNARTDRARKQARDQELKMIVLLEYLCCSGLQKLSMAVRAGGRNTK*
Ga0070670_10097178623300005331Switchgrass RhizosphereVRNSLVAALVACADQPLKAKARRFLAGLSSDELQFIAEFLGSCILESQARSARDRAELAERIAQFQNARTGCARKHARDQELKMILLLEFLCCSGIQ
Ga0068869_10040360023300005334Miscanthus RhizosphereVRNSLVAALVACADRPLKTKARRFLAGLASDELQFIAEFLGSCILESQARSARDRAELAERIARFQHARTDRARKHARDQELKMILLLEYLCCSGIQNLSMSASAGGPGVK*
Ga0070667_10082648413300005367Switchgrass RhizosphereVRNSLVAALVACADRPLKTKARRFLAGLSSDELQFIAEFLGSCILESQARSARDRAELAERIARFQHARTDRARKHARDQELKMILLLEYLCCSGIQNLSMSASAGGSGVK*
Ga0070662_10199290113300005457Corn RhizosphereVRNSLVAALVACADQPLKAKARRFLAGLSSDELQFIAEFLGSCILESQARSARDRAELAERIAQFQNARTGCARKHARDQELKMILLLEFLCCSGIQKMPMPVRAGGPRVK*
Ga0068855_10095990813300005563Corn RhizosphereAVRNSLVAALVACADRPLKTKARRFLAGLSSDELQFIAEFLGSCILESQARSARDRAELAERIARFQHARTDRARKHARDQELKMILLLEYLCCSGIQKLSMSASAGRPGVK*
Ga0070664_10068918313300005564Corn RhizosphereCADQPLKAKARRFLAGLSSDELQFIAEFLGSCILESQARSARDRAELAERIARFQNARTDRARKQARDQELKMIVLLEYLCCSGLQKLSMAVRAGGRNTK*
Ga0068864_10247964513300005618Switchgrass RhizosphereVRNSLVAALVACADQPLKAKARRFLAGLSSDELQFIAEFLGSCILESQARGARDRAELAERIARFQHARTDRARKHARDQELKMILLLEYLCCSEIQKLSMSASAGGPGVK*
Ga0068863_10001601183300005841Switchgrass RhizosphereVRNSLVAALVACADRPLKTKARRFLAGLSSDELQFIAEFLGSCILESQARSARDRAELAERIARFQHARTDRARKHARDQELKMILLLEYLCCSGIQKLSMSASAGGPGVK*
Ga0068860_10053316523300005843Switchgrass RhizosphereVRNSLVAALVACADRPLKTKARRFLAGLSSDELQFIAEFLGSCILESQARGARDRAELAERIARFQHARTDRARKHARDQELKMILLLEYLCCSEIQKLSMSASAGGPGVK*
Ga0066795_1000679253300005938SoilVRNSLVAALVSCADQPLKSTARRFLAGLSSDELQFIAEFLGSCVLESQVRCARNRAEIAERIARFQQARADRARMRSTDQELKMILLLEYLCRSGVQEFSMPARAAGPSVN*
Ga0066795_1011289623300005938SoilVRNSLVAALVACADQPLKSTARRFLDGLSSDELQFIAEFLGSCMLEPQVRYARNRAELAERIARFQRARADRARMRSTDQGLKMILLLEYLCRSGVQEFSMPARAGSASVN*
Ga0066795_1017993313300005938SoilAALVSCADQPLKSTARRFLAGLSSDELQFIAEFLGACVLESQVRCARNRAELAERIAHFQQARADRARMRTTDQELKMIVLLEYLCRSGVQEFSMPVRAGSASVN*
Ga0075028_10093434913300006050WatershedsVRKSLVAALVECADQPLKSKARRFLAGLSSDELQFIAEFLGSCILDAPVHCAHNRAELAERIARFQLARADCARVRSTDQEHKMILLLEYLCTVAEATGRCQPRHGVPA*
Ga0097691_100578343300006055Arctic Peat SoilVRDSLVAALVACADQPLKSEARRFLAGLSSDELQFIAEFLGSCVLESQIRWACNRAELAERIARFQQVRADRVQRCSTDQAHKMILLLEYLCRSVVQERGMAAGAGSSSVN*
Ga0097691_102652813300006055Arctic Peat SoilVRNSLVAALVSCADQPLKSTARRFLAGLSSDELQFIAEFLGSCVLESQVRCARNRAEIAERIARFHQARADRARMRSTDQELKMILLLEYLCRSGVQEFSMPARAAGPSVN*
Ga0075019_1059501123300006086WatershedsVRKSLVAALVECADQPLKSKARRFLAGLSSDELQFIAEFLGSCILDAPVHCARNRAEVAERIARFQQARADCARAHSTDQEHKMILLLEYLCTVAEATGRCRPRHGVPA*
Ga0097621_10189697013300006237Miscanthus RhizosphereSLVAALVACADRPLKTKARRFLAGLSSDELQFIAEFLGSCILESQARSARDRAELAERIARFQHARTDRARKHARDQELKMILLLEYLCCSGIQNLSMSASAGGPGVK*
Ga0068871_10068262313300006358Miscanthus RhizosphereVRNSLVAALVACADRPLKTKARRFLAGLSSDELQFIAEFLGSCILESQARSARDRAELAERIARFQHARTDRARKHARDQELKMILLLEYLCCS
Ga0068871_10084644013300006358Miscanthus RhizosphereSLVAALVACADEQLQEQARRFLAGLSADELQFIAEFLGAYILESQSRGRSRTERAERIARFQQARADRELKMILVREYLCRSGVPHLSMTAGVD*
Ga0075521_1031345913300006642Arctic Peat SoilVRDSLVAALVACADQPLKSEARRFLAGLSSDELQFIAEFLGSCVLESQVRCACNRAELAERIARFQQVRADRAQRCSTDQAHKMILLLEYLCRSVVQERGMAAGAGSASVN*
Ga0075520_102051343300006795Arctic Peat SoilLRDSLVAALVECADRPLKSEARRFLTGLSADELQFIAEFLGSCVLESQVRCACNRAELAERIARFQQARAGRARMRSPDQELKMILLLEYLCRSGVQGLSMPARASGSGVN*
Ga0075520_110051813300006795Arctic Peat SoilVRNSLVAALVACADRPLKSEARRFLTGLSADELQFIAEFLGSCVLESQLRCARNRAELAERIARFQQARANRAPMRSPDQELKMILLLEYLCRSGVQGLSMPAHATGSSVN*
Ga0075520_116589813300006795Arctic Peat SoilSEARRFLAGLSSDELQFIAEFLGSCVLESQVRCACNRAELAERIARFQQVRADRAQRCSTDQAHKMILLLEYLCRSGVQERGMAAGAGSSSVN*
Ga0066797_103934933300006864SoilVRNSLVAALVSCADQPLKSTARRFLAGLSSDELQFIAEFLGSCVLESQVRCARNRAEIAERIARFQQARADRARMRSTDQELKMILLLEYLCRSGVQEFSLPARAGSENS*
Ga0066797_104333543300006864SoilVRNSLVAALVACADQPLKSTARRFLDGLSSDELQFIAEFLGSCMLEPQVRYARNRAELAERIARFQRARADRARMRSTDQELKMILLLEYLCRSGVQEFSMPPRAAGPSVN*
Ga0075434_10220308613300006871Populus RhizosphereKARRFLAGLSSDELQFIAEFLGSCILESQARSARDRAELAERIARFQHARSDRARKYARDQELKMILLLEYLCCSGIQKLSMSASAGGPGVK*
Ga0066793_1016568523300009029Prmafrost SoilVRNSLVAALVSCADQPLKSTARRFLAGLSSDELQFIAEFLGSCVLESQVRCARNRAELAERIAHFQQARADRARMRTTDQELKMIVLLEYLCRSGVQEFSMPVRARSASVN*
Ga0066793_1017490333300009029Prmafrost SoilLVAALVACADQPLKSTARRFLDGLSSDELQFIAEFLGSCMLEPQVRYARNRAELAERIARFQRARADRARMRSTDQGLKMILLLEYLCRSGVQEFSMPARAGSASVN*
Ga0066793_1030753013300009029Prmafrost SoilVRDSLVAALVACADQPLKSEARRFLAGLSSDELQFIAEFLGSCVLEPQIRWTCNRAELAERIARFQQVRADRVQRCSTDQAHKMILLLEYLCRSVVQERGMAAGAGSSSVN*
Ga0066793_1031339913300009029Prmafrost SoilVRNSLVAALVACADRPLKSEARRFLTGLSADELQFIAEFLGSCVLESQVRCARNRAELAERIARFQRERADRARMRSPDQELKMILLLEYLCRSGVPGLSMPARAGGSSVN*
Ga0105245_1183878813300009098Miscanthus RhizosphereVRNSLVAALVACADQPLRTKARRFLAGLSADELQFIAEFLGSCILESQARSARDRAELAERIARFQHARTDRARKHARDQELKMILLLEYLCCSGIQNLSMSASAGGPGVK*
Ga0105242_1044804943300009176Miscanthus RhizosphereAVRNSLVAALVACADQPLRTKARRFLAGLSADELQFIAEFLGSCILESQARSARDRAELAERIAHFQNARTGCARKHARDQELKMILLLEFLCCSGIQKMPMPVRAGGPRVK*
Ga0105248_1007610623300009177Switchgrass RhizosphereVRNSLVAALVACADEQLQEQARRFLAGLSADELQFIAEFLGAYILESQSRGRSRTERAERIARFQQARADRELKMILVREYLCRSGVPHLSMTAGVD*
Ga0116107_110306923300009548PeatlandVAALVACADRPLKSEARRFLAGLSSDELQFIAEFLGSCVLESQMRCARNRAELAERIARFQQARADRARMRSPDQELKMILLLEYLCRAGVQGLSMPARAVGSSVN*
Ga0105249_1193809923300009553Switchgrass RhizosphereVRNSLVAALVACADQPLKAKARRFLAGLSSDELQFIAEFLGSCILESQARSARDRAELAERIAHFQNARTGCARKHARDQELKMILLLEFLCCSGIQKMPMPVRAGGPRVK*
Ga0105239_1291272123300010375Corn RhizosphereLVCFLTDRRSAVRNSLVAALVACADQPLKTKARRFLAGLSADELQFIAEFLGSCILESQARSARDRAELAERIARFQHARTDRARKHARDQELKMILLLEYLCCSGIQNLSMSASAGGPGVK*
Ga0136449_10003235493300010379Peatlands SoilVRASLVAALESCAEGPGRTQAERFLAGLSSDELQFIAEFLGACLLESARDRCVSRAEVADRIARYQEARACPARCSADQEHKMILLLEYLCRCGLLRFPLPARARQCS*
Ga0134121_1199927923300010401Terrestrial SoilVRNSLIAALVAYADQPLKAKTRRFLAGLSSDELQFIAEFLGSCILESQARSARDRAELAERIARFQNARTDRARKQARDQELKMIVLLEYLCCSGLQKLSMAVRAGGRNTK*
Ga0105246_1116495013300011119Miscanthus RhizosphereVRNSLVAALVACADQPLKAKARRFLAGLSSDELQFIAEFLGSCILESQARSARDRAELAERIARFQNARTDRARKQARDQELKMIVLLE
Ga0164304_1086190323300012986SoilVKTKARRFLAGLSSDELEFIAEFLGSCILESQARSARDRAELAERIARFQRARTGRARKHDRDQELKMILLLEYLCCSGIQKLSMSASAGGPSVN*
Ga0182010_1049679523300014490FenVRNSLVAALVACADQPLKSEARRFLSGLSSDELQFIAEFLGSCVLESQVGCACNRAELAERIARFQQARADRARRWSTDQEHKMILLLEYLCRLGVQERGMAAGAGSANFN*
Ga0182014_1011235343300014491BogVRHALVAALVACADRPLKSEARRFLAGLSADELQFIAEFLGSCVLESQMRCARNRAELAERIARFQQARADRAGMRSPDQERKMILLLEYLCRAGVQGLSMPARAAGSGVN*
Ga0182017_1003904333300014494FenVRNSLVAALVACADQPLKSEARRFLAGLSSDELQFIAEFLGSCVLESQARCACNRAEMAERIARFQRARADRAQRCSTDQAHKMILLLEYLCRSGVQERGMAAGAGSANFN*
Ga0182011_1075782613300014496FenVRNSLVAALVACADQPLKSEARRFLAGLSSDELQFIAEFLGSCVLESQARYACNRAELAERIAHFQRARADRAQRCSTDQAHKMILLLEYLCRSGVQERRMAAGAGSASLN
Ga0182019_1012484923300014498FenVACADQPLKSEARRFLAGLSSDELQFIAEFLGSCVLEPEVRCACNRAELAQRIARFQQARANRTERWSSDQAHKMILLLEYLCHTGVQARDMAASAGGASFN*
Ga0182027_1200308813300014839FenVRNSLVAALVACADRPLKSEARRFLAGLSADELQFIAEFLGSCVLESQMRCARNRAELAERIARFQQARADRAGMRSPDQERKMILLLEYLCRAGVPGLSMPARAAGS
Ga0182027_1218498413300014839FenVRDSLVAALVACADQPLRSEARRFLAGLSSDELQFIAEFLGSCVLESQIRRACNRAELAERIARFHQVRVDRAQRCSTDQAHKMILLLEYLCRSGVQERGMAAGAGSANFN*
Ga0132258_1151884043300015371Arabidopsis RhizosphereVRNSLVAALVACADQALKTKARRFLVGLSSDELQFIAEFLGSCILESQARSARDRAELAERIARFQHARSDRARKYARDQELKMILLLEYLCCSGIQKLSMSASAGGPGVK*
Ga0132255_10167767023300015374Arabidopsis RhizosphereVRNSLVAALVACADQALKTKARRFLAGLSSDELQFIAEFLGSCILESQARSARDRAELAERIARFQHARSDRARKYARDQELKMILLLEYLCCSGIQKLSMSASAGGPGVK*
Ga0182036_1105534723300016270SoilVRKSLVAALVACADQPLKAKARRFLAGLSSDELQFIAEFLGSCILESQARCAGDRAELAERIARFQRARTARSRTLVPDQELKMILLLEYLCCSGLQKLSMAVRAGEPRQTNEPIRPG
Ga0182032_1150765323300016357SoilVRKSLVAALVESADQPLKSKARRFLAGLSSDELQFIAEFLGSCILDAPVHCARSRAELAERIACFQRARADCARVRCTDQEHKMILLLEYLCNVAETTGRCRPRRGVPA
Ga0182038_1075044133300016445SoilRKSLVAALVECADQPLKSKVRRFLAGLSSDELQFIAEFLGSCILDAPVHCGRSRAELAERIACFQRARADCARVRCTDQEHKMILLLEYLCNVAETTGRCRPRRGVPA
Ga0163161_1204437313300017792Switchgrass RhizosphereVRNSLVAALVACADRPLKTKARRFLAGLSSDELQFIAEFLGSCILESQARSARDRAELAERIARFQHARTDRARKHARDQELKMILLLEYLCCSGIQKLSMSASAGRPGVK
Ga0187889_1046577913300018023PeatlandVRNSLVAALVACADRPLKSEARRFLAGLSSDELQFIAEFLGSCVLESQMRCARNRAELAERIARFQQARADRARMRSPDQELKMILLLEYLCRAGVQGLSMPARAVGSSVN
Ga0184628_1006731753300018083Groundwater SedimentVRNSLVAALVACADQPLKKKARRFLAGLSSDELQFIAEFLGSCILESQARSARDRAELAERIARFQNARTDGARKHARDQELKMILLLEFLCCSGIQKMPMPVRAGGPRVK
Ga0182031_116486613300019787BogVRHALVAALVACADRPLKSEARRFLAGLSADELQFIAEFLGSCVLESQMRCARNRAELAERIARFQQARADRAGMRSPDQERKMILLLEYLCRAGVQGLSMPARAAGSGVN
Ga0210402_1050899713300021478SoilVRNSLVAALVACADQPLKAKARRFLAGLSSDELQFIAEFLGSCILESQARCARDRAELAERIARFQQARTNRARKLAPDQELKMILLLEYLCCSGIQKLSMTARAGGPS
Ga0222622_1013015123300022756Groundwater SedimentVRNSLVAALVACADQSLKTKARRFLAGLSSDELQFIAEFLGSCILESQARSARDRAELAERIARFQKARTDRTRKLARDQELKMILLLEYLCCSGIQRLSMTVRAGGPSAN
Ga0224559_100672833300023091SoilVRDSLVAALVACADQPLRSEARRFLAGLSSDELQFIAEFLGSCVLESQIRWACNRAELAERIARFHQVRVDRAQRCSTDQAHKMILLLEYLCCSVVQKRGMAAGAGSSSVN
Ga0224559_101408353300023091SoilVRNSLVAALVACADRPLKSEARRFLAGLSADELQFIAEFLGSCVLESQMRCARNRAELAERIARFQQARADRAGMRSPDQERKMILLLEYLCRAGVPGLSMPARAAGSSVN
Ga0208079_100066673300025481Arctic Peat SoilVRNSLVAALVSCADQPLKSTARRFLAGLSSDELQFIAEFLGSCVLESQVRCARNRAEIAERIARFQQARADRARMRSTDQELKMILLLEYLCRSGVQEFSMPARAAGPSVN
Ga0207932_106034913300025495Arctic Peat SoilNSLVAALVSCADQPLKSTARRFLAGLSSDELQFIAEFLGSCVLESQVRCARNRAEIAERIARFQQARADRARMRSTDQELKMILLLEYLCRSGVQEFSMPPRAAGPSVN
Ga0207927_103436213300025579Arctic Peat SoilVRDSLVAALVACADQPLKSEARRFLAGLSSDELQFIAEFLGSCVLESQIRWACNRAELAERIARFQQVRADRVQRCSTDQAHKMILLLEYLCRSVVQERGMAAGAGSSSVN
Ga0209385_113692113300025650Arctic Peat SoilSEARRFLAGLSSDELQFIAEFLGSCVLESQVRCACNRAELAERIARFQQVRADRAQRCSTDQAHKMILLLEYLCRSGVQERGMAAGAGSSSVN
Ga0209385_115283713300025650Arctic Peat SoilVRNSLVAALVACADRALKSEARRFLTGLSADELQFIAEFLGSCVLESQVRCARNRAELAERIARFQQARANRAPMRSPDQELKMILLLEYLCRSGVQGLSMPAHATGSSVN
Ga0209385_119217413300025650Arctic Peat SoilLRDSLVAALVECADRPLKSEARRFLTGLSADELQFIAEFLGSCVLESQVRCACNRAELAERIARFQQARAGRARMRSPDQELKMILLLEYLCRSGVQGLSMPARASGSGVN
Ga0209638_101049623300025725Arctic Peat SoilVRNSLVAALVSCADQPLKSTARRFLAGLSSDELQFIAEFLGSCVLESQVRCARNRAEIAERIARFQQARADRARMRSTDQELKMILLLEYLCRSGVQEFSMPPRAAGPSVN
Ga0209584_1040731113300025878Arctic Peat SoilVRDSLVAALVACADQPLKSEARRFLAGLSSDELQFIAEFLGSCVLESQIRWARNRAELAERIARFQQVRADRAQRCSTDQAHKMILLLEYLCRS
Ga0207680_1030358623300025903Switchgrass RhizosphereVRNSLVAALVACADRPLKTKARRFLAGLSSDELQFIAEFLGSCILESQARSARDRAELAERIARFQHARTDRARKHARDQELKMILLLEYLC
Ga0207650_1021173323300025925Switchgrass RhizosphereVRNSLVAALVACADQPLKAKARRFLAGLSSDELQFIAEFLGSCILESQARSARDRAELAERIARFQNARTDRARKQARDQELKMIVLLEYLCCSGLQKLSMAVRAGGRNTK
Ga0207701_1153097713300025930Corn, Switchgrass And Miscanthus RhizosphereVRNSLVAALVACADQPLKAKARRFLAGLSSDELQFIAEFLGSCILESQARSARDRAELAERIARFQHARTGRARKHARDQELKMILLLEYLCCSGIQKLSMSASAGGP
Ga0207670_1030206523300025936Switchgrass RhizosphereVRNSLVAALVACADQPLKAKARRFLAGLSSDELQFIAEFLGSCILESQARSARDRAELAERIAHFQNARTGCARKHARDQELKMILLLEFLCCSGIQKMPMPVRAGGPRVK
Ga0207711_1005658523300025941Switchgrass RhizosphereVRNSLVAALVACADEQLQEQARRFLAGLSADELQFIAEFLGAYILESQSRGRSRTERAERIARFQQARADRELKMILVREYLCRSGVPHLSMTAGVD
Ga0207689_1022604213300025942Miscanthus RhizosphereVRNSLVAALVACADRPLKTKARRFLAGLSSDELQFIAEFLGSCILESQARSARDRAELAERIARFQHARTDRARKHARDQELKMILLLEYLCCSGIQNLSMSASAGGPGVK
Ga0207676_1018072713300026095Switchgrass RhizosphereVRNSLVAALVACADQPLKAKARRFLAGLSSDELQFIAEFLGSCILESQARSARDRAELAERIARFQHARTDRARKHARDQELKMILLLEYLCCSEIQKLSMSASAGGPGVK
Ga0209881_106987113300026273SoilLVCFLTDRRSAVRNSLVAALVACADQPLKSTARRFLDGLSSDELQFIAEFLGSCMLEPQVRYARNRAELAERIARFQRARADRARMRSTDQELKMILLLEYLCRSGVQEFSMPPRAAGPSVN
Ga0311332_1172106423300029984FenVSALVACADQPLKSEARRFLAGLSSDELQFIAEFLGACVLESQARCACNRAELAERIARFQQARADRARRWSTDQEHKMILLLEYLCRLGVQERGMAAGAGSRTVN
Ga0311334_1134100313300029987FenPETHVSYVSSPTGDLPLRSALVAALVACADGPLKEKARRFLAGLSADELQFIAEFLGSCVLESQENCVRNREELAEWIARFQQKRAKRVRGQSSDQDLKMIVLLEYLCRSGAQERHLAARAGGYWTMPPSA
Ga0311336_1204072813300029990FenKSKARRFLTGLSSDELQFIAEFLGSCVLESQVRCACNRAELAERIARFQQARADRGQRCSSDQAHKMILLLEYLFRSGDQERGMAAGAGSASFN
Ga0311335_1095961323300030838FenVRNSLVAALVACADEPLKATAHRFLAGLSADELQFIAEFLGSCVLEGQDSCVRNRAELAEWIAGFQLKRVKWVQGQASDQERKMSVLRVYLSRSGVQELGMPARAGSSGAN
Ga0170834_10550469913300031057Forest SoilGSVCFLTDRRSAVRNSLVAALVACADPPLKAKARRFLAGLSSDELQFIAEFLGSCILESQARCARDRAELAERIARFQQARTNRARKLAPDQELKMILLLEYLCCSGIQKLSMTARASGPSVK
Ga0170824_12104367923300031231Forest SoilVRNSLVAALVACADPPLKAKARRFLAGLSSDELQFIAEFLGSCILESQARCARDRAELAERIARFQQARTNRARKLAPDQELKMILLLEYLCCSGIQKLSMTARASGPSVK
Ga0302323_10132873313300031232FenVAALVACADGPMRWRARRFLAGLSSDELEFIAAFLGSCVLESQARCTGDRSQLAERVARFQQVGAECSPSWSCDREHKMIVLLEYLCQAGMHQRGMAARAGSASLN
Ga0265331_1023978113300031250RhizosphereLTDRRSAVRHSLVTALVSCANQPLQSQVRRFLAGLSKDELEFIAEFLGAYVLESQGRWACNRAELAERIARFQQVRLDRERAWSGDQEHKMIVLLEYLCHAGVQERGMARASGSSVN
Ga0170820_1749029123300031446Forest SoilVRNSLVAALVACADQPLKPKARRFLAGLSSDELQFIAEFLGSCILESQSRCASDRAELAERIARFQQARAHRPRKIARDEELKMILLLEYLCCSGIQNLSMSASSGGPSVK
Ga0311351_1082531223300031722FenVRDSLVAALVACADQPLKSEARRFLAGLSSDELQFIAEFLGSCVLESQARGALNRAELAERIARFQQVRADRAQRCSTDQAHKMILLLEYLCRSRVQERWMTAGAGSSSVN
Ga0302321_10065855413300031726FenVRDTLVAALVACADQPMRRAARRFLAGLSSDELQFIAEFLGSCVLEPEQQGGCNRGELAERIARFQQARADRAQKWTTDQAHKMILLLEYLCRSGIQERGMAASAGSAAYN
Ga0302321_10107455923300031726FenVRDSLVAALVACADQPLKSEARRFLAGLSSDELQFIAEFLGSCVLESQARGALNRAELAERIARFQQVRADRAQRCSTDQAHKMILLLEYLCCSVVQERGMAAGAGTGSVN
Ga0302321_10142366023300031726FenVRDSLVAALIACADPPLKSEARRFLAGLSSDELQFIAEYLGSSVLDPQAPCGCNRAELARRVARFQQAREDQARSQSTDQAHKMILLLEYLCRLGVRERGMAARAGSAARN
Ga0302321_10216787823300031726FenLRNSLVAALVACADQPLKSKARRFLTGLSSDELQFIAEFLGSCVLESQLRCARNRAEFAERIARFQHTRADRARMRSPDLELKMILLLEYLCHSGVQMPAPAGGSGVN
Ga0318567_1042088913300031821SoilLRKSLVAALVECADQPLKSKVRRFLAGLSSDELQFIAEFLGSCILDAPVHCGRSRAELAERIACFQRARADCARVRCTDQEHKMILLLEYLCNVAETTGRCRPRRGVPA
Ga0306926_1146030313300031954SoilECADQPLKSKVRRFLAGLSSDELQFIAEFLGSCILDAPAHCARNRAELAERIACFQRARADCARVRCTDQEHKMILLLEYLCNVAETTGRCHPRRGVPA
Ga0311301_1003823783300032160Peatlands SoilVRASLVAALESCAEGPGRTQAERFLAGLSSDELQFIAEFLGACLLESARDRCVSRAEVADRIARYQEARACPARCSADQEHKMILLLEYLCRCGLLRFPLPARARQCS
Ga0370484_0148852_1_3243300034125Untreated Peat SoilLVAALVSCADQPLKSTARRFLAGLSSDELQFIAEFLGSCVLESQVRCARNRAEIAERIARFQQARADRARMRSTDQELKMILLLEYLCRSGVQEFSMPARAAGPSVN
Ga0370481_0279384_48_3293300034281Untreated Peat SoilLKSQARRFLDGLSSDELQFIAEFLGSCILDSQARCARNRAELAERIARFQQARTDRPRGRTTDQELKTILLLEYLCRSGELPVPLRAGGPAVS
Ga0370481_0343253_222_5453300034281Untreated Peat SoilLVAALVACADQPLKSEARRFLAGLSSDELQFIAEFLGSCVLESQIRWACNRAELAERIARFQQVRADRAQRCSTDQAHKMILLLEYLCRSVVQERGMAAGAGSSSVN


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.