NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F103428

Metagenome / Metatranscriptome Family F103428

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F103428
Family Type Metagenome / Metatranscriptome
Number of Sequences 101
Average Sequence Length 47 residues
Representative Sequence MIRTESCTGLGGSTQRLHQKEIGMIVLIVEYQGEGQDEDPDPARKGSR
Number of Associated Samples 78
Number of Associated Scaffolds 101

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 38.61 %
% of genes near scaffold ends (potentially truncated) 20.79 %
% of genes from short scaffolds (< 2000 bps) 74.26 %
Associated GOLD sequencing projects 71
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (45.545 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine
(30.693 % of family members)
Environment Ontology (ENVO) Unclassified
(87.129 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(80.198 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58
1JGI24006J15134_1000208313
2KVRMV2_1001147521
3Ga0052192_10241341
4Ga0066369_100708784
5Ga0066369_101306922
6Ga0066368_101595122
7Ga0066382_100122524
8Ga0081592_10251401
9Ga0068504_11250762
10Ga0068469_12108851
11Ga0068470_11349253
12Ga0068471_11013404
13Ga0068471_11013412
14Ga0068471_11013449
15Ga0068471_12395934
16Ga0068471_16219261
17Ga0068471_16279994
18Ga0068471_16282812
19Ga0068478_11475873
20Ga0068475_10744204
21Ga0068476_11107701
22Ga0068477_13905672
23Ga0068483_10019677
24Ga0068488_12139804
25Ga0068480_14106541
26Ga0068480_18027932
27Ga0068480_18167352
28Ga0068502_11746423
29Ga0068502_11843522
30Ga0068482_11511023
31Ga0068481_11357142
32Ga0068481_12155192
33Ga0068481_15159292
34Ga0068503_103482362
35Ga0068503_103820982
36Ga0068503_103914321
37Ga0068503_103918944
38Ga0068503_111616001
39Ga0068493_102844184
40Ga0099957_11300731
41Ga0066376_100486796
42Ga0066376_100936422
43Ga0066366_105688571
44Ga0066367_10984542
45Ga0114905_10102237
46Ga0114905_12033561
47Ga0115657_11851952
48Ga0117920_101130510
49Ga0114995_108026441
50Ga0114996_102588391
51Ga0114996_105928432
52Ga0114993_100642785
53Ga0114908_10475373
54Ga0114994_100161712
55Ga0114932_100271631
56Ga0114901_12215502
57Ga0114906_12072251
58Ga0115002_100559973
59Ga0115002_101515771
60Ga0133547_107025444
61Ga0151674_10129851
62Ga0181432_10466471
63Ga0181432_11456252
64Ga0211549_103181712
65Ga0211578_101459823
66Ga0211697_101155522
67Ga0206678_100515401
68Ga0206685_101223331
69Ga0226832_100979243
70Ga0232639_12008232
71Ga0209992_100216917
72Ga0209634_10560452
73Ga0209337_100746610
74Ga0208180_11356831
75Ga0208030_10567712
76Ga0208113_10235961
77Ga0208391_10201141
78Ga0208560_10168491
79Ga0208879_10553924
80Ga0208879_12213681
81Ga0207991_11641872
82Ga0209710_10176553
83Ga0209752_10874461
84Ga0209709_100194209
85Ga0209502_100150602
86Ga0257108_11328231
87Ga0257112_102535711
88Ga0302123_103227591
89Ga0302135_103164541
90Ga0308004_100038837
91Ga0302117_102146281
92Ga0315328_106010961
93Ga0310122_100292013
94Ga0310121_104384501
95Ga0310124_105014991
96Ga0310124_105096173
97Ga0315319_102643862
98Ga0315333_103505543
99Ga0310345_102281322
100Ga0315334_111879591
101Ga0310342_1004578882
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 0.00%    β-sheet: 12.50%    Coil/Unstructured: 87.50%
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Variant

51015202530354045MIRTESCTGLGGSTQRLHQKEIGMIVLIVEYQGEGQDEDPDPARKGSRSequenceα-helicesβ-strandsCoilSS Conf. score
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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
54.5%45.5%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Marine
Deep Ocean
Seawater
Marine
Marine Oceanic
Marine
Marine
Marine
Seawater
Marine
Marine
Hydrothermal Vent Fluids
Diffuse Hydrothermal Fluids
Marine
Marine Sediment
Seawater
Deep Subsurface
30.7%6.9%5.9%8.9%22.8%3.0%5.9%3.0%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI24006J15134_10002083133300001450MarineMIRTESCAGLGGSTQRLHQKEIDMVVLIVEYQGEGQNDDPDPAQKGSEGSY*
KVRMV2_10011475213300002231Marine SedimentMIQTESCTGLGGSTQRLHQKEITVVVLFLEELGGETDDPDPHSKRSR*
Ga0052192_102413413300003153MarineMIRTESCAGLGGSTQRLHQKEIGMIVLIVKYHGEGQDEDPDPARKGSC*
Ga0066369_1007087843300005969MarineSLMIRTESCAGLGGSTQRLHQKEIGMIVLLVEYQEGGQDEDPDPARKGSR*
Ga0066369_1013069223300005969MarineMIRTESCTGLGGSTQRLHQKEIGMIVLLVECQGEGQNEDPDPTRKGSC*
Ga0066368_1015951223300006002MarineMIRTESCTGLGGSTQRLHQKEIGMIVLVEYQGEGQNEDPEPARKGSR*
Ga0066382_1001225243300006013MarineMIRTEDCTGLGGSTQRLHQKEIKVVVLFVELLEGESDEPDPYSKRSR*
Ga0081592_102514013300006076Diffuse Hydrothermal FluidsMIRTESCTGLGGSTQRLHQKEIGMIVLVEYQGEGQDEDPDPARKGSC*
Ga0068504_112507623300006304MarineMIRTESCAGLGGSTQRLHQKEIGMIVLIVEYQDGGQDEDPDPARKGSR*
Ga0068469_121088513300006306MarineMIRTESCTGLGGSTQRLHQKEIGMIVLIVEYQGEG
Ga0068470_113492533300006308MarineMIRTESCTGLGGSTQRLHQKEIGMIVLVEYQGEGQNEDPDPTRKGSC*
Ga0068471_110134043300006310MarineMIRTENCTGLGGSTQRLHQKEIGMIVLVEYQEGGQDEDPDPTRKGSR*
Ga0068471_110134123300006310MarineMIRTESCTGLGGSTQRLHQKEIDMIVLVEYQGEGQNEDPDPNSKGSR*
Ga0068471_110134493300006310MarineLMIQTESCTGLGGSTQRLHQKEIGMIVLVEYQGEGQNEDPEPTRKGSR*
Ga0068471_123959343300006310MarineMIRTESCTGLGGSTQRLHQKEIGMIILIVEYQGEGQDEDPDPARKGSC*
Ga0068471_162192613300006310MarineMIRTESCTGLGGSTQRLHQKEIDMVVLVEYQGEGQNEDPDPTRKGSC*
Ga0068471_162799943300006310MarineMIRTESCTGLGGSTQRLHQKEIGMIVLVEYQGEGQDEDPDPHSKGSR*
Ga0068471_162828123300006310MarineMIRTESCTGLGGSTQRLHQKEIGMIVLVEYQGEGQNEDPEPTRKGSR*
Ga0068478_114758733300006311MarineMIRTESCTGLGGSTQRLHQKEIGMIVLIVEYQGEGQDEDPDPARKGSC*
Ga0068475_107442043300006318MarineMIRTESCTGLGGSTQRLHQKEIDMIVLVEYQGEGQDEDPEPHSKGSR*
Ga0068476_111077013300006324MarineMMRTESCTGLGGSTQRLHQKEIGMIVLIVEYQEEGQDEDPDPTRKGSC*
Ga0068477_139056723300006326MarineMIRTESCTGLGGSTQRLHQKEIGMIVIIVEYQEEGQDEDPDPARKGSR*
Ga0068483_100196773300006330MarineEYSLMIQTESCTGLGGSTQRLHQKEIGMIVLIVEYQEEGQDEDPDPARKGSR*
Ga0068488_121398043300006331MarineMIRTESCTGLGGSTQRLHQKEIGMIVLIVEYQEGGQDEDPDPTRKGSR*
Ga0068480_141065413300006335MarineMIRTESCTGLGGSTQRLHQKEIDMIVLVEYQGEGQNEDPDPARKGSC*
Ga0068480_180279323300006335MarineMIRTESCTGLGGSTQRLHQKEIGMIVLVEYQGEGQDEDPDPTRKGSC*
Ga0068480_181673523300006335MarineMIRTESCTGLGGSTQRLHQKEIGMVVLVEYQGEGQNEDPEPTRKGSR*
Ga0068502_117464233300006336MarineMIRTENCTGLGGSTQRLHQKEIGMIVLVEYQGEGQDEDPDPTRKGSC*
Ga0068502_118435223300006336MarineMIRTESCTGLGGSTQRLHQKEIDMIVLVEYQGEGQNEDPDPTRKGSC*
Ga0068482_115110233300006338MarineMIRTESCTGLGGSTQRLHQKEIGMIVLIVEYQEEGQDEDPDPARKGSC*
Ga0068481_113571423300006339MarineMIRTENCTGLGGSTQRLHQKEIGMIVLIVEYQGEGQDEDPDPARKGSC*
Ga0068481_121551923300006339MarineMIRTENCTGLGGSTQRLHQKEIGMVVLVEYQGEGQNEDPDPTRKGSC*
Ga0068481_151592923300006339MarineMIRTESCTGLGGSTQRLHQKEIDMIVLVEYQGEGQNEDPDPNSKESR*
Ga0068503_1034823623300006340MarineMIRTESCTGLGGSTQRLHQKEIGMIVLIVKYQGEGQDEDPDPARKGSC*
Ga0068503_1038209823300006340MarineMMRIERLTGLGCNSQRLHQKEIGMIVLIVEYQEGGQDEDPDPARKGSR*
Ga0068503_1039143213300006340MarineMIQTESCTGLGGSTQRLHQKEIKVVVLFLEELLEGESDDPDPHSKGSR*
Ga0068503_1039189443300006340MarineMIRTESCSGLGGSTQRLHQKEIGMIVLIVEYQEEGQDEDPDPARKGSR*
Ga0068503_1116160013300006340MarineMIRTESCTGLGGSTQRLHQKEIGMIVLIVEYQEGGQDEDPDPTRKGSS*
Ga0068493_1028441843300006341MarineMIRTESCTGLGGSTQRLHQKEIGMIVLIVEYQGEGQDEDPDPARKGSR*
Ga0099957_113007313300006414MarineMIRTESCTGLGGSTQRLHQKEIGMIVLVEYQEGGQDEDPDPTRKGSR*
Ga0066376_1004867963300006900MarineMIRTESCTGLGGSTQRLHQKEIGMIVLVFKYQGEGQDEDPDPVRKGSR*
Ga0066376_1009364223300006900MarineMIRTESCAGLGGSTQRLHQKEIGMIVLLVEYQEGGQDEDPDPARKGSR*
Ga0066366_1056885713300007283MarineMIRTESCTGLGGSTQRLHQKEIKVLVLLLTELLELEGETDDPDPHSKGS
Ga0066367_109845423300007291MarineMIRTESCTGLGGSTQRLHQKEIGMIVLVEYQGEGQDEDPDPTRKGSR*
Ga0114905_101022373300008219Deep OceanMIRTESCTGLGGSTQRLHQKEIGMIVLIVECQEGGQDEDPD
Ga0114905_120335613300008219Deep OceanYSLMIRTESCTGLGGSTQRLHQKEIGMVVLFFEELLEGESDDPDPHSKRSR*
Ga0115657_118519523300008735MarineMIRTESCTGLGGSTQRLHQKESSMIIVTVEYQGEGQNEDPDPTRKGSR*
Ga0117920_1011305103300009108MarineMIRTESCTGLGGSTQRLHQKESSMVIYQGEGQNEDPDPTRKGSR*
Ga0114995_1080264413300009172MarineMIRTESCTGLGGSTQRLHQKEIDMIILSVEYQGEGLNDDPDPARKGSR*
Ga0114996_1025883913300009173MarineGLGGSTQRLHQKEIDMVVLIVEYQGEGQNDDPDPAHKGNEGSY*
Ga0114996_1059284323300009173MarineMIRTESCTGLGGSTQRLHQKEIGMIILVEYQGEGQNEDPEPARKGSR*
Ga0114993_1006427853300009409MarineMIRTESCAGLGGSTQRLHQKEIDMVVLIVECQGEGQNDDPDPAQKGSEGSY*
Ga0114908_104753733300009418Deep OceanMIRTESCTGLGGSTQRLHQKEIGMIVLVEYQGEGQNEDPDPACKGSR*
Ga0114994_1001617123300009420MarineMIRTESCAGLGGSTQRLHQKEIDMVVLIVEYQGEGQNDDPDPAHKGNEGSY*
Ga0114932_1002716313300009481Deep SubsurfaceMIRTESCTGLGGSTQRLHQKEISMIILFLEELLEGESDDPDPHSKGSC*
Ga0114901_122155023300009604Deep OceanMIRTESCTGLGGSTQRLHQKEIKVLVLLLTELLELEGETDDPDPHSKGSR*
Ga0114906_120722513300009605Deep OceanIEYSLMIRTESCTGLGGSTQRLHQKEIKVLVLLLTELLELEGETDDPDPHNKGSR*
Ga0115002_1005599733300009706MarineMIRTESCAGLGGSTQRLHQKEIDMVVLIVECQGEGQNDDPDPAHKGNEGSY*
Ga0115002_1015157713300009706MarineMIQTESCTGLGGSTQRLHQKEIGMIILVEYQGEGQNEDPEPARKGSR*
Ga0133547_1070254443300010883MarineMIRTESCTGLGGSTQRLHQKEIGMIVLILDYQGEGQDEDPDPASKESR*
Ga0151674_101298513300011252MarineSCAGLGGSTQRLHQKEIDMVVLIVECQGEGQNDDPDPAQKGSEGSY*
Ga0181432_104664713300017775SeawaterESCTGLGGSTQRLHQKEMGMIVLIVEYQGEGQNEDPDPARKGSC
Ga0181432_114562523300017775SeawaterMIRTESCTGLGGSTQRLHQKEIGMIVLVEYQGEGQNEDPDPTRKGSR
Ga0211549_1031817123300020425MarineMIRTESCTGLGGSTQRLHQKEIDMIVLVEYQGEGQNEDPDPNSKGSR
Ga0211578_1014598233300020444MarineMIRTESCTGLGGSTQRLHQKEIGMIVLIVEYQEGGQDEDPDPTRKGSR
Ga0211697_1011555223300020458MarineMIRTESCTGLGGSTQRLHQKEIGMIVLVEYQGEGQDEDPDPTRKGSC
Ga0206678_1005154013300021084SeawaterMIRTESCTGLGGSTQRLHQKEIGMVVLVEYQGEGQDEDPDPTRKGSC
Ga0206685_1012233313300021442SeawaterLMIRTESCTGLGGSTQRLHQKEIGMVVLVEYQGEGQDEDPDPHSKGSC
Ga0226832_1009792433300021791Hydrothermal Vent FluidsMIRTESCTGLGGSTQRLHQKEIKVLVLFLTELLELEGETDDPDPRSEGSR
Ga0232639_120082323300021977Hydrothermal Vent FluidsMIRTENCAGLGGSTQRLHQKEIKVIILLIELLKGEPDEPDPHSKGNR
Ga0209992_1002169173300024344Deep SubsurfaceMIRTESCTGLGGSTQRLHQKEISMIILFLEELLEGESDDPDPHSKGSC
Ga0209634_105604523300025138MarineMIRTESCAGLGGSTQRLHQKEIDMVVLIVECQGEGQNDDPDPAQKGNEGSY
Ga0209337_1007466103300025168MarineMIRTESCAGLGGSTQRLHQKEIDMVVLIVECQGEGQNDDPDPAQKGSEGSY
Ga0208180_113568313300025277Deep OceanMIRTESCTGLGGSTQRLHQKEIGMVVLVEYQGEGQNEDPDPARKGSC
Ga0208030_105677123300025282Deep OceanMIRTESCTGLGGSTQRLHQKEIGMIVLIVEYQEGGQDEDPDPTRKGSY
Ga0208113_102359613300026087MarineMIRTESCAGLGGSTQRLHQKEIGMIVLVEYQGEGQNEDPEPARKGSR
Ga0208391_102011413300026108MarineMIRTESCTGLGGSTQRLHQKEIDMIILSVEYQGEGQNDDPDPTRKASR
Ga0208560_101684913300026115Marine OceanicMIRTESCTGLGGSTQRLHQKEIKVLVLLLTELLELEGETDDPDPHNKGSR
Ga0208879_105539243300026253MarineMIRTESCAGLGGSTQRLHQKEIGMIVLLVEYQEGGQDEDPDPARKGSR
Ga0208879_122136813300026253MarineMIRTESCTGLGGSTQRLHQKEIGMIVLLVECQGEGQNEDPDPTRKGSC
Ga0207991_116418723300026264MarineMIRTESCTGLGGSTQRLHQKEIGMIVLLIEYQKEGQDEDPDPARKGS
Ga0209710_101765533300027687MarineMIRTESCAGLGGSTQRLHQKEIDMVVLIVEYQGEGQNDDPDPAHKGNEGSY
Ga0209752_108744613300027699MarineMIRTESCTGLGGSTQRLHQKEIGMIVLVEYQGEGQDEDPDPHSKGSC
Ga0209709_1001942093300027779MarineMIRTESCTGLGGSTQRLHQKEIDMIILSVEYQGEGLNDDPDPARKGSR
Ga0209502_1001506023300027780MarineMIRTESCAGLGGSTQRLHQKEIGMVVLIVEYQGEGQNDDPDPAHKGNEGSY
Ga0257108_113282313300028190MarineMIRTESCTGLGGSTQRLHQKEIGMIVLIVKYQGEGQDEDPDPARKGSC
Ga0257112_1025357113300028489MarineSCAGLGGSTQRLHQKEIGMIVLVVEYQGEGQDEDPDPARKGSC
Ga0302123_1032275913300031623MarineMIRTESCAGLGGSTQRLHQKEIDMVVLIVECQGEGQNDDPD
Ga0302135_1031645413300031625MarineMIRTESCAGLGGSTQRLHQKEIDMVVLIVEYQGEG
Ga0308004_1000388373300031630MarineMIRTESCTGLGGSTQRLHQKEIGMIVLVVEYQGEGQNEDPDPVRKGSR
Ga0302117_1021462813300031639MarineMIRTESCAGLGGSTQRLHQKEIDMVVLIVECQGEGQ
Ga0315328_1060109613300031757SeawaterMIRTESCTGLGGSTQRLHQKEIGMVVLVEYQGEGQDEDPDPHSKGSC
Ga0310122_1002920133300031800MarineMIQTESCTGLGGSAQRLHQKEIKVIILFFEELLEGESDDPDPHSKRSR
Ga0310121_1043845013300031801MarineMIQTESCTGLGGSTQRLHQKEIGMIILVEYQGEGQNEDP
Ga0310124_1050149913300031804MarineMIRTESCAGLGGSTQRLHQKEITVVIVEYQGEGQNDDPDPARKRNR
Ga0310124_1050961733300031804MarineMIQTESCTGLGGSTQRLHQKEIGMIVLVEYQRESQNEDPDPARKGSR
Ga0315319_1026438623300031861SeawaterMIRTESCTGLGGSTQRLHQKEIGMIVLIVEYQEGGQDEDPDPTRKGSC
Ga0315333_1035055433300032130SeawaterMIRTESCTGLGGSTQRLHQKEIGMVVLVEYQGEGQDEDPDPTRKGS
Ga0310345_1022813223300032278SeawaterMIRTENCTGLGGSTQRLHQKEIGMIVLVEYQEGGQDEDPDPTRKGSR
Ga0315334_1118795913300032360SeawaterMIRTESCTGLGGSTQRLHQKEIGMIVLIFEYQEEGQDEDPDP
Ga0310342_10045788823300032820SeawaterMIRTESCTGLGGSTQRLHQKEIGMIVLVEYQEGGQDEDPDPTRKGSR


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