Metagenome Family F103405

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F103405
Family Type	Metagenome
Number of Sequences	101
Average Sequence Length	55 residues
Representative Sequence	MEQILEKLETLIDDIERDSQLTKDEIHDSLLKLKEEIEDYQLRRDEGGDLQWEDLD
Number of Associated Samples	46
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	66.34 %
% of genes near scaffold ends (potentially truncated)	13.86 %
% of genes from short scaffolds (< 2000 bps)	85.15 %
Associated GOLD sequencing projects	44
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.59

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (72.277 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater (45.545 % of family members)
Environment Ontology (ENVO)	Unclassified (100.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (98.020 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 48.81% β-sheet: 0.00% Coil/Unstructured: 51.19%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.59
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.59
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF13640	2OG-FeII_Oxy_3	3.96
PF04965	GPW_gp25	0.99
PF00041	fn3	0.99
PF10544	T5orf172	0.99
PF00629	MAM	0.99
PF13585	CHU_C	0.99

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.28 %
All Organisms	root	All Organisms	27.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.28 %
cellular organisms	root	All Organisms → cellular organisms	25.74 %
Viruses	superkingdom	All Organisms → Viruses	1.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.28 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	25.74 %
Viruses	superkingdom	All Organisms → Viruses	1.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.28 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	23.76 %
Viruses	superkingdom	All Organisms → Viruses	1.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.28 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	23.76 %
Viruses	superkingdom	All Organisms → Viruses	1.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.28 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	23.76 %
Viruses	superkingdom	All Organisms → Viruses	1.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.28 %
unclassified Bacteroidetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes	22.77 %
Viruses	superkingdom	All Organisms → Viruses	1.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.28 %
Bacteroidetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	22.77 %
Viruses	superkingdom	All Organisms → Viruses	1.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001450\|JGI24006J15134_10012097	All Organisms → cellular organisms → Bacteria	4196	Open in IMG/M
3300001450\|JGI24006J15134_10018073	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	3292	Open in IMG/M
3300001450\|JGI24006J15134_10043220	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	1893	Open in IMG/M
3300001450\|JGI24006J15134_10049717	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	1721	Open in IMG/M
3300006310\|Ga0068471_1364430	Not Available	933	Open in IMG/M
3300006340\|Ga0068503_10290692	Not Available	542	Open in IMG/M
3300006736\|Ga0098033_1065413	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	1055	Open in IMG/M
3300006736\|Ga0098033_1199449	Not Available	554	Open in IMG/M
3300006750\|Ga0098058_1020450	Not Available	1946	Open in IMG/M
3300006750\|Ga0098058_1093056	Not Available	819	Open in IMG/M
3300006753\|Ga0098039_1151582	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	792	Open in IMG/M
3300006753\|Ga0098039_1208194	Not Available	662	Open in IMG/M
3300006753\|Ga0098039_1333207	Not Available	505	Open in IMG/M
3300006754\|Ga0098044_1400169	Not Available	516	Open in IMG/M
3300006789\|Ga0098054_1142352	Not Available	888	Open in IMG/M
3300006789\|Ga0098054_1228932	Not Available	673	Open in IMG/M
3300006900\|Ga0066376_10669660	Not Available	574	Open in IMG/M
3300006921\|Ga0098060_1061418	Not Available	1096	Open in IMG/M
3300006923\|Ga0098053_1018168	Not Available	1538	Open in IMG/M
3300006923\|Ga0098053_1041747	Not Available	959	Open in IMG/M
3300006926\|Ga0098057_1180956	Not Available	514	Open in IMG/M
3300008050\|Ga0098052_1016433	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	3647	Open in IMG/M
3300008050\|Ga0098052_1019054	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	3308	Open in IMG/M
3300008050\|Ga0098052_1048629	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	1840	Open in IMG/M
3300008050\|Ga0098052_1160323	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	887	Open in IMG/M
3300010149\|Ga0098049_1144924	Not Available	735	Open in IMG/M
3300010153\|Ga0098059_1179188	Not Available	829	Open in IMG/M
3300010153\|Ga0098059_1315874	Not Available	596	Open in IMG/M
3300010153\|Ga0098059_1364640	Not Available	547	Open in IMG/M
3300010155\|Ga0098047_10251112	Not Available	672	Open in IMG/M
3300017704\|Ga0181371_1032913	Not Available	852	Open in IMG/M
3300017704\|Ga0181371_1039329	Not Available	774	Open in IMG/M
3300017705\|Ga0181372_1008109	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	1938	Open in IMG/M
3300017705\|Ga0181372_1041977	Not Available	772	Open in IMG/M
3300017713\|Ga0181391_1035122	Not Available	1212	Open in IMG/M
3300017713\|Ga0181391_1105916	Not Available	634	Open in IMG/M
3300017713\|Ga0181391_1131355	Not Available	558	Open in IMG/M
3300017720\|Ga0181383_1158563	Not Available	606	Open in IMG/M
3300017724\|Ga0181388_1056022	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	949	Open in IMG/M
3300017728\|Ga0181419_1110606	Not Available	672	Open in IMG/M
3300017728\|Ga0181419_1114881	Not Available	657	Open in IMG/M
3300017730\|Ga0181417_1143628	Not Available	576	Open in IMG/M
3300017731\|Ga0181416_1075986	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	796	Open in IMG/M
3300017731\|Ga0181416_1132855	Not Available	599	Open in IMG/M
3300017732\|Ga0181415_1007945	Not Available	2554	Open in IMG/M
3300017732\|Ga0181415_1152409	Not Available	516	Open in IMG/M
3300017741\|Ga0181421_1177772	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	547	Open in IMG/M
3300017743\|Ga0181402_1093833	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	779	Open in IMG/M
3300017757\|Ga0181420_1133368	Not Available	749	Open in IMG/M
3300017757\|Ga0181420_1184826	Not Available	611	Open in IMG/M
3300017760\|Ga0181408_1007372	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	3147	Open in IMG/M
3300017760\|Ga0181408_1128611	Not Available	655	Open in IMG/M
3300017764\|Ga0181385_1167474	Not Available	665	Open in IMG/M
3300017764\|Ga0181385_1200518	Not Available	603	Open in IMG/M
3300017772\|Ga0181430_1130980	Not Available	735	Open in IMG/M
3300017773\|Ga0181386_1253849	Not Available	519	Open in IMG/M
3300017775\|Ga0181432_1006482	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	2737	Open in IMG/M
3300017775\|Ga0181432_1019698	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	1734	Open in IMG/M
3300017775\|Ga0181432_1025250	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	1562	Open in IMG/M
3300017775\|Ga0181432_1028921	Not Available	1476	Open in IMG/M
3300017775\|Ga0181432_1039897	Not Available	1288	Open in IMG/M
3300017775\|Ga0181432_1061598	Not Available	1068	Open in IMG/M
3300017775\|Ga0181432_1096474	Not Available	877	Open in IMG/M
3300017775\|Ga0181432_1112079	Not Available	820	Open in IMG/M
3300017775\|Ga0181432_1112211	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	819	Open in IMG/M
3300017775\|Ga0181432_1115303	Not Available	809	Open in IMG/M
3300017775\|Ga0181432_1126972	Not Available	773	Open in IMG/M
3300017775\|Ga0181432_1155312	Not Available	705	Open in IMG/M
3300017775\|Ga0181432_1156786	Not Available	702	Open in IMG/M
3300017775\|Ga0181432_1167205	Not Available	681	Open in IMG/M
3300017775\|Ga0181432_1171024	Not Available	674	Open in IMG/M
3300017775\|Ga0181432_1197766	Not Available	629	Open in IMG/M
3300017775\|Ga0181432_1211110	Not Available	609	Open in IMG/M
3300017775\|Ga0181432_1222329	Not Available	593	Open in IMG/M
3300017775\|Ga0181432_1243289	Not Available	567	Open in IMG/M
3300017775\|Ga0181432_1259558	Not Available	549	Open in IMG/M
3300017775\|Ga0181432_1269644	Not Available	538	Open in IMG/M
3300017775\|Ga0181432_1277347	Not Available	531	Open in IMG/M
3300017775\|Ga0181432_1296523	Not Available	513	Open in IMG/M
3300017781\|Ga0181423_1253026	Not Available	658	Open in IMG/M
3300020411\|Ga0211587_10148120	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	998	Open in IMG/M
3300020438\|Ga0211576_10097305	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	1629	Open in IMG/M
3300020447\|Ga0211691_10179208	Not Available	811	Open in IMG/M
3300020470\|Ga0211543_10581041	Not Available	527	Open in IMG/M
3300020471\|Ga0211614_10517368	Not Available	529	Open in IMG/M
3300025096\|Ga0208011_1046013	Not Available	1023	Open in IMG/M
3300025133\|Ga0208299_1001238	All Organisms → Viruses	19582	Open in IMG/M
3300025133\|Ga0208299_1016468	Not Available	3403	Open in IMG/M
3300025133\|Ga0208299_1024484	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	2616	Open in IMG/M
3300025133\|Ga0208299_1030316	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	2261	Open in IMG/M
3300025133\|Ga0208299_1143531	Not Available	758	Open in IMG/M
3300025168\|Ga0209337_1000191	Not Available	48967	Open in IMG/M
3300025168\|Ga0209337_1001223	All Organisms → Viruses	19823	Open in IMG/M
3300025168\|Ga0209337_1019627	All Organisms → cellular organisms → Bacteria	3967	Open in IMG/M
3300025168\|Ga0209337_1037651	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	2617	Open in IMG/M
3300025168\|Ga0209337_1060460	Not Available	1915	Open in IMG/M
3300025873\|Ga0209757_10291947	Not Available	519	Open in IMG/M
3300026079\|Ga0208748_1135127	Not Available	593	Open in IMG/M
3300027685\|Ga0209554_1035623	Not Available	1936	Open in IMG/M
3300032820\|Ga0310342_100599532	Not Available	1248	Open in IMG/M
3300032820\|Ga0310342_101759647	Not Available	740	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	100.00%

Habitat	Taxonomy	Distribution
Oceanic	Environmental → Aquatic → Marine → Oceanic	49.50%
Strait	Environmental → Aquatic → Marine → Strait	45.54%
Unclassified	Environmental → Aquatic → Marine → Unclassified	4.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	47.52%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	45.54%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	4.95%
Aphotic Zone	Environmental → Aquatic → Marine → Oceanic → Aphotic Zone	1.98%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	45.54%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	45.54%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	4.95%
Seawater	Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater	1.98%
Marine	Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine	1.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001450	Marine viral communities from the Pacific Ocean - LP-53	Environmental	Open in IMG/M
3300006310	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_3_0500m	Environmental	Open in IMG/M
3300006340	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0770m	Environmental	Open in IMG/M
3300006736	Marine viral communities from the Subarctic Pacific Ocean - 1_ETSP_OMZ_AT15124 metaG	Environmental	Open in IMG/M
3300006750	Marine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaG	Environmental	Open in IMG/M
3300006753	Marine viral communities from the Subarctic Pacific Ocean - 6_ETSP_OMZ_AT15160 metaG	Environmental	Open in IMG/M
3300006754	Marine viral communities from the Subarctic Pacific Ocean - 10_ETSP_OMZ_AT15264 metaG	Environmental	Open in IMG/M
3300006789	Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG	Environmental	Open in IMG/M
3300006900	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_Bottom_ad_5009_LV_A	Environmental	Open in IMG/M
3300006921	Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG	Environmental	Open in IMG/M
3300006923	Marine viral communities from the Subarctic Pacific Ocean - 15B_ETSP_OMZ_AT15312_CsCl metaG	Environmental	Open in IMG/M
3300006926	Marine viral communities from the Subarctic Pacific Ocean - 18_ETSP_OMZAT15316 metaG	Environmental	Open in IMG/M
3300008050	Marine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaG	Environmental	Open in IMG/M
3300010149	Marine viral communities from the Subarctic Pacific Ocean - 13B_ETSP_OMZ_AT15268_CsCl metaG	Environmental	Open in IMG/M
3300010153	Marine viral communities from the Subarctic Pacific Ocean - 20_ETSP_OMZ_AT15318 metaG	Environmental	Open in IMG/M
3300010155	Marine viral communities from the Subarctic Pacific Ocean - 12_ETSP_OMZ_AT15267 metaG	Environmental	Open in IMG/M
3300017704	Marine viral communities from the Subarctic Pacific Ocean - Lowphox_07 viral metaG	Environmental	Open in IMG/M
3300017705	Marine viral communities from the Subarctic Pacific Ocean - Lowphox_08 viral metaG	Environmental	Open in IMG/M
3300017713	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 14 SPOT_SRF_2010-08-11	Environmental	Open in IMG/M
3300017720	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 6 SPOT_SRF_2009-12-23	Environmental	Open in IMG/M
3300017724	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 11 SPOT_SRF_2010-05-17	Environmental	Open in IMG/M
3300017728	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 42 SPOT_SRF_2013-04-24	Environmental	Open in IMG/M
3300017730	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 40 SPOT_SRF_2013-02-13	Environmental	Open in IMG/M
3300017731	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 39 SPOT_SRF_2013-01-16	Environmental	Open in IMG/M
3300017732	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 38 SPOT_SRF_2012-12-11	Environmental	Open in IMG/M
3300017741	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 44 SPOT_SRF_2013-06-19	Environmental	Open in IMG/M
3300017743	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 25 SPOT_SRF_2011-08-17	Environmental	Open in IMG/M
3300017757	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 43 SPOT_SRF_2013-05-22	Environmental	Open in IMG/M
3300017760	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 31 SPOT_SRF_2012-02-16	Environmental	Open in IMG/M
3300017764	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 8 SPOT_SRF_2010-02-11	Environmental	Open in IMG/M
3300017772	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 53 SPOT_SRF_2014-04-10	Environmental	Open in IMG/M
3300017773	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 9 SPOT_SRF_2010-03-24	Environmental	Open in IMG/M
3300017775	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 55 SPOT_SRF_2014-07-17	Environmental	Open in IMG/M
3300017781	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 46 SPOT_SRF_2013-08-14	Environmental	Open in IMG/M
3300020411	Marine microbial communities from Tara Oceans - TARA_B100000131 (ERX556098-ERR599130)	Environmental	Open in IMG/M
3300020438	Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)	Environmental	Open in IMG/M
3300020447	Marine microbial communities from Tara Oceans - TARA_B100000745 (ERX556090-ERR599159)	Environmental	Open in IMG/M
3300020470	Marine microbial communities from Tara Oceans - TARA_B100000287 (ERX555976-ERR599053)	Environmental	Open in IMG/M
3300020471	Marine microbial communities from Tara Oceans - TARA_B100000214 (ERX556063-ERR599002)	Environmental	Open in IMG/M
3300025096	Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG (SPAdes)	Environmental	Open in IMG/M
3300025133	Marine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaG (SPAdes)	Environmental	Open in IMG/M
3300025168	Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)	Environmental	Open in IMG/M
3300025873	Marine viral communities from the Pacific Ocean - ETNP_6_1000 (SPAdes)	Environmental	Open in IMG/M
3300026079	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_Bottom_ad_4513_LV_A (SPAdes)	Environmental	Open in IMG/M
3300027685	Marine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - Bottom_A/KNORR_S2/LV (SPAdes)	Environmental	Open in IMG/M
3300032820	Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - S1503-DNA-20-500_MG	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI24006J15134_100120978	3300001450	Marine	MEQILEKLEVLIDDIERDSQLTRDEIIISLSKLKTEIEDYQLRREEGSSLEWDDLD*
JGI24006J15134_100180736	3300001450	Marine	MEEIQNQVEILIDNIERDPQLTKDEILLALTILKAEIEDYNFQREEGGDLQWEDLD*
JGI24006J15134_100432203	3300001450	Marine	MENILEKLETLIDDIERDSQLTRDEITDALTKLKTEIEDYQLKREESNSINWEDLD*
JGI24006J15134_100497173	3300001450	Marine	MEQILEKLETIIDDIERDPQLTRDDIHNALLKLKSEIEDYQIRRDEGDLQWEDLD*
Ga0068471_13644301	3300006310	Marine	MEQILEKLETLIDDIERDSQLTRDEIHDALKQLKEEIEDHQLSQEEGRGLEWDDLD*
Ga0068503_102906921	3300006340	Marine	MEQILEKLETLIDDIERDSQLTKDEIHDSLLKLKEEIEDYQLRRDEG
Ga0098033_10654132	3300006736	Marine	MEQILEKLETLIDDIERDSQLTKDEIHDTLVKIKTEIEDHQLRVYEGGGLQWEDLE*
Ga0098033_11994492	3300006736	Marine	MEHILEKLETLIDDIERDSQLTRDEIHEALVKLKTEIEDHQLRVYEGGGLQWEDLE*
Ga0098058_10204506	3300006750	Marine	MEQILEKLETLIDDVERDEELDKDEILQELQKLKIEMEDYQLGGDEGGDLQWDDLD*
Ga0098058_10930563	3300006750	Marine	MDTILETLETLIDDIERDENLTKDDIHSALSKLKTEIEDHQLSINEGGSFEWEDLD*
Ga0098039_11515821	3300006753	Marine	MEQILEKLEVLIDDIERDSQLTRDEIHDALVKLKGEIEDHQIRLDEGGGLEWDDLD*
Ga0098039_12081942	3300006753	Marine	MEQILEKLETLIDDIERDSQLTRDEILTTLNNIKTEIEDHQLRIDEGTLNWEDLD*
Ga0098039_13332071	3300006753	Marine	MEQILEKLEVLIDDIERDSQLTKDEIHTALAKLKDELEDYQLRRDEGDLQWEDLD*
Ga0098044_14001693	3300006754	Marine	MDKILETLETLIDDIERDENLTKDDIHSALSKLKTEIEDHQLSINEGGSFEWEDLD*
Ga0098054_11423524	3300006789	Marine	MDTILEKLEVLIDDIEGDSQLTKDEIHTALIKLKEEIEEHQIRKEEGDFH
Ga0098054_12289321	3300006789	Marine	MDTILETLETLIDDIERDENLTKDDIHSALSKLKTEIEDHQLSINEG
Ga0066376_106696602	3300006900	Marine	MEQILDKLEALIDDIERDSQLTREEIHDALVKLKTEIEDHQLRMDEGGGLQWDDLD*
Ga0098060_10614181	3300006921	Marine	IGLNKNDTILEKLEVLIDDIERDSSLTKEDINDALNALKTEIEDYNLEREGDRTLEWEDLD*
Ga0098053_10181682	3300006923	Marine	MDTILETLETLIDDIERDENLTKDDIHSALSKLKTEIEDHQLSINEGGSFEWDDLD*
Ga0098053_10417471	3300006923	Marine	TLIDDIERDENLTKDDIHSALSKLKTEIEDHQLSINEGGDLQWEDLD*
Ga0098057_11809561	3300006926	Marine	MEQILEKLETLIDDIERDSQLTRDEIHDALKQLKEEIEDHQLSQEEG
Ga0098052_10164335	3300008050	Marine	MDTILETLETLIDDIERDENLTKDDIHSALSKLKTEIEDHQLSINEGGDLQWEDLD*
Ga0098052_10190544	3300008050	Marine	MDTILEKLEVLIEDIEGNSQLTKEDIKISLNKLKEEIEDYNLRREEYTGGSINWEDLD*
Ga0098052_10486293	3300008050	Marine	MDAILENLETLIDDIERDSQMTKDEIYDALLKLKGEIEDYQIRLDGGGDLQWGDLD*
Ga0098052_11603233	3300008050	Marine	MDTILEKLEILIDGISTDENLSKEEIHNALIILKAEIEDYNLRREEGSSLEWEDLD*
Ga0098049_11449241	3300010149	Marine	MDTILEKLEILIDGISTDENLSKEEIHNALIILKAEIEDYNLRRE
Ga0098059_11791883	3300010153	Marine	MEQILEKLEVLIDDIERDSQLTKDEIHTALAKLKDEIEDYQLRREEGNSIDWEDLD*
Ga0098059_13158742	3300010153	Marine	MDTILEKLEVLIDDIERDSTLTKDEIHIALSKLKEEIEDYQLRREEGNSIDWEDLD*
Ga0098059_13646402	3300010153	Marine	MEQILEKLEVLIDDIERDENLTKDDIHNALSKLKEEIEEYQLIREEGSSLEWEDLD*
Ga0098047_102511123	3300010155	Marine	MDAILENLETLIDDIERDSQMTKDEIYDALLKLKGEIEDYQIRLDGGGDL
Ga0181371_10329131	3300017704	Marine	MEQILEKLETLIDDIERDSQLTKDEIHDSLLKLKEEIEDYQLRRDEGGDLQWEDLD
Ga0181371_10393292	3300017704	Marine	MEQILEKLETLIDDIERDSQLTKDEIHDALLKLKGEIEDYQIRLDGGGDLQWGDLD
Ga0181372_10081091	3300017705	Marine	MDIILEKLEVLIDDIERDSQLTKDEIHTALTKLKEEIEEYQLRREEGSSLEWED
Ga0181372_10419771	3300017705	Marine	MEQILEKLEVLIDDVERDSQMTKDEIHDALLKLKSELEDHQLRRDEGGDLQWEDLD
Ga0181391_10351222	3300017713	Seawater	MDTILEKLETIIDDVERDNTMTNEDIISSLYKLKEEIEDYNLRREEGGSIEWEDLD
Ga0181391_11059162	3300017713	Seawater	MDTILEKLEVLIDDIERDSQLTKDEIHIALSKLKEEMEEYQLRREEGNSIDWEDLD
Ga0181391_11313551	3300017713	Seawater	MENILEKLEVLIDDISTDENLSKDEIHTALVILKAEIEECQLRREGGSSLEWEDLD
Ga0181383_11585632	3300017720	Seawater	MDTILEKLEVLMDDIERDESLTKEEIHTALSTLKTEIEDYNLERGEGRTLEWEDLD
Ga0181388_10560221	3300017724	Seawater	MNTILEKLEVLIDDIERDSTLTKDEIHIALSKLKEEMEEYQLRREEGNSIDWEDLD
Ga0181419_11106061	3300017728	Seawater	MDTILEKLETIIDDVERDNTMTNEDIISSLYKLKGEIEDYNLRREEGGSIEWEDLD
Ga0181419_11148812	3300017728	Seawater	MDIILEKLEVLMDDIERDENLTKDEIYLALTILKSEIEDYSIERGEGRTLEWEDLD
Ga0181417_11436281	3300017730	Seawater	MEQILEKLEVLMDDIERDENLTKDEIYLALTILKSEIEDYSIERGEGRTLEWEDLD
Ga0181416_10759864	3300017731	Seawater	MEQILEKLEVLMDDIERDENLTKDEIYLALTILKSEIEDYSIERGEGRTLE
Ga0181416_11328552	3300017731	Seawater	MENIVEKLETLIDDIERDENLTKDDIYDALTKLKEEIEEYQLKDYEGGSSLNWEDLD
Ga0181415_10079453	3300017732	Seawater	MDIILEKLEVLMDDIERDENLTKDEIYLALTILKSKIEDYNIERGEGRTLEWEDLD
Ga0181415_11524091	3300017732	Seawater	MDTILEKLETLIDDIERDSQLTKDEIHAALVKLKEEIEDYQLRREEGGSIEWEDLD
Ga0181421_11777721	3300017741	Seawater	MNTILEKLEVLIDDIERDSQLTKDEIHTALTKLKEEIEEHQIRKEEGDFHRDFTFE
Ga0181402_10938331	3300017743	Seawater	MNTILEKLEVLIDDIERDEYLTKEDINKSLNKLKEEIEDYNLRQEEGNSLEWEDLD
Ga0181420_11333681	3300017757	Seawater	MEQILEKLETLIDDIERDSQLTKDEIHTALSKLKEEIEDYQLRREEGNSIDWEDLD
Ga0181420_11848262	3300017757	Seawater	MDTILEKLEVLIDDIERDESLTKEDINRALNKLKEEIEDYQLRREGSSIEWEDLD
Ga0181408_10073725	3300017760	Seawater	MDTILEKLEVLIDDIERDENLTKDDIHNALSKLKEEIEDYNLRREEGGDLQWEDLD
Ga0181408_11286111	3300017760	Seawater	IKMDTILEKLEVLIDDIERDESLTKEDINRALNKLKEEIEDYNLQKDERTLNWEDLD
Ga0181385_11674743	3300017764	Seawater	MDTILEKLEVLMDDIERDENLTKEEIHTALTILKSEIEDYNIEKEEGRTLEWEDLD
Ga0181385_12005181	3300017764	Seawater	MDIILEKLEVLIDDIERDSQLTKDEIHTALTKLKEEIEEYQLRREEGSSLEWEDLD
Ga0181430_11309802	3300017772	Seawater	MDTILEKIEVLIDDIERDSQLTKDEIHTALTKLKEEIEEYQLRREEGNSIDWEDLD
Ga0181386_12538492	3300017773	Seawater	MDTILEKLEVHMDDIERDESLTKEEIHTALSTLKTEIEDYNLERGEGRTLEWEDLD
Ga0181432_10064822	3300017775	Seawater	METIIEKLEVLIDDIERDSQLTKDEIHTALVKLKEEIEDYQLRRDEGGDLQWEDLD
Ga0181432_10196985	3300017775	Seawater	MEQILEKLEVLIDDMERDPQLTRDEILLALTILKAEIEDYQLNRDEGGSIEWEDLD
Ga0181432_10252502	3300017775	Seawater	MEQILEKLEILIDDIERDSQLTKDEIHDVLVKLKSEIEDYKLRRDEGGSLEWEDLD
Ga0181432_10289213	3300017775	Seawater	MEQILEKLETLIDDLERDSQLTRDEIHGALVKLKGEIEDYQIRKDEGDLHRDFSFEDLD
Ga0181432_10398973	3300017775	Seawater	MEHILEKLEVLIDDMERDSQLTRDEILLALNMLKAEIEDYQLSRDGGGSFDWDDLD
Ga0181432_10615983	3300017775	Seawater	MEHILEKIETLIDDIERDSQLTREEIHETLVKLKVEIEDHQLRMDEGGGLQWDDLD
Ga0181432_10964741	3300017775	Seawater	MDTILEKLEVLIDDIERDSQLTKDEIHNALKQLKDEIEDYQLRAEEGGSLEWDDLD
Ga0181432_11120792	3300017775	Seawater	MEQILEKLETLIDDIERDSQLTRDEIIKTLNKLKTEIEDHQLRMDEGSSLDWDDLD
Ga0181432_11122112	3300017775	Seawater	MEQILEKLETLIDDIERDSQLTKDEIHEALVKLKTEIEDHQLRMEEGGTFEWDDLD
Ga0181432_11153032	3300017775	Seawater	MDTILEKLEVLIDDIERDSQLTKDEIHTALSKLKEEIEDYNLQREEGSSLDWEDLD
Ga0181432_11269722	3300017775	Seawater	MEQILEKLETLIDDIERDSQLTKDEIHDTLVNIKTEIEDYNLRRDEGDLQWEDLD
Ga0181432_11553123	3300017775	Seawater	MENILEKLETLIDEIERDSQLTRGEILETLNKLKEEIEDYQLRVDEGGGLQWEDLE
Ga0181432_11567863	3300017775	Seawater	MDIILENLETLIDDIERDSQMTKDEIYDALLKLKGEIEDYQIRLDGGGDLQWGDLD
Ga0181432_11672051	3300017775	Seawater	MEQILEKLETLIDDIERDSQLTRDEIHDALVKLKTEIEDYNLRRDEGDLQWEDLD
Ga0181432_11710242	3300017775	Seawater	MEQILEKLETLIDDIERDSQLTKDEIHDSLLKLKEEIEDHQIRMDEGGDLQWDDLD
Ga0181432_11977662	3300017775	Seawater	MEQILETLETLIDDIERDSQLTRDEIHDVLVKLKEEIEDHQLKIDEGTLNWEDLD
Ga0181432_12111102	3300017775	Seawater	MEEIKNQLEALIDDIEGDSQLTKDEILESLNKLKSEIEDYQLRLEEGSDLQWEDLD
Ga0181432_12223292	3300017775	Seawater	MDTILEKLETLIDDIERDSQLTKDEIHDTLLKLKEEIEDHQLRSDSGDLRWEDLE
Ga0181432_12432891	3300017775	Seawater	MEQILEKLETLIDDIERDSQLTRDEIYEALVKLKTEIEDHQLNINEGGSLDWDDLD
Ga0181432_12595582	3300017775	Seawater	MENILEKLETLIDDIERDSQMTKDEIHDALLKLKEEVEDYQLRMDEGGGLQWEDLE
Ga0181432_12696442	3300017775	Seawater	MDTLLEKLETIIDDIERDSQLTRDEIIKSLSELKIEIEDYQLRMDEGGGLQWDDLD
Ga0181432_12773472	3300017775	Seawater	MEHILEKIEVLIDDMERDSQLTRDEIILALTILKAEIEDYQLSREEGSSLDWDDLD
Ga0181432_12965232	3300017775	Seawater	MEQILEKLEILIDDIERDSQLTKDEIHDALLKLKGEIEDHQLRMDEGGGLQWEDLE
Ga0181423_12530262	3300017781	Seawater	MEQILEKLETLIDDIERDSQLTKDEIHTVLSKLKEEIEDYNLRKEEGTLEWEDLD
Ga0211587_101481203	3300020411	Marine	MDTILEKLEVLIDDIERDSQLTKDDIHEALVILKAEIEDYNLERGEGRTIEWEDLD
Ga0211576_100973054	3300020438	Marine	MDIILEKLEVLMDDIERDENLTKDEIYLALTILKSEIEDYNIERGEGRTLEWEDLD
Ga0211691_101792082	3300020447	Marine	MENILEKLETLIDDIERDSQLTKDEIHDSLLKLKEEIEDYQLTKNEGLQWEDLD
Ga0211543_105810413	3300020470	Marine	MDTILEKLEVLMDDIERDESLTKEEIHTALSTLKTEIEDYNLRQEEGRTLEWEDLD
Ga0211614_105173681	3300020471	Marine	MDTILEKLEVLMDDIERDENLTKEEIHTALTILKSEIEDYNIERGEGRTLEWEDLD
Ga0208011_10460132	3300025096	Marine	MEQILEKLETLIDDIERDSQLTKDEIHDTLVKIKTEIEDHQLRVYEGGGLQWEDLE
Ga0208299_100123825	3300025133	Marine	MDTILETLETLIDDIERDENLTKDDIHSALSKLKTEIEDHQLSINEGGDLQWEDLD
Ga0208299_10164685	3300025133	Marine	MDTILEKLEVLIEDIEGNSQLTKEDIKISLNKLKEEIEDYNLRREEYTGGSINWEDLD
Ga0208299_10244844	3300025133	Marine	MDTILETLETLIDDIERDENLTKDDIHSALSKLKTEIEDHQLSINEGSSFEWEDLD
Ga0208299_10303164	3300025133	Marine	MDAILENLETLIDDIERDSQMTKDEIYDALLKLKGEIEDYQIRLDGGGDLQWGDLD
Ga0208299_11435313	3300025133	Marine	MDIILEKLETLIDDIERDSQITKDEIHDSLLKLKEEIEDYQLRRDEGGGLQWEDLD
Ga0209337_100019120	3300025168	Marine	MENILEKLETLIDDIERDSQLTRDEITDALTKLKTEIEDYQLKREESNSINWEDLD
Ga0209337_10012234	3300025168	Marine	MEEIQNQVEILIDNIERDPQLTKDEILLALTILKAEIEDYNFQREEGGDLQWEDLD
Ga0209337_10196278	3300025168	Marine	MEQILEKLEVLIDDIERDSQLTRDEIIISLSKLKTEIEDYQLRREEGSSLEWDDLD
Ga0209337_10376514	3300025168	Marine	MEQILEKLETIIDDIERDPQLTRDDIHNALLKLKSEIEDYQIRRDEGDLQWEDLD
Ga0209337_10604603	3300025168	Marine	MDTILEKLETLIDDIERDSQLTRDEIHDALIKLKEEMEDYQIRKDNSGDLQWEDLD
Ga0209757_102919472	3300025873	Marine	MEQILEKLEVLIDDIERDSQLTKDEIYNKIKEIKSELEDHQIRMDEGGGLQWEDLE
Ga0208748_11351271	3300026079	Marine	MEQILEKIEILIDDIERDSQLTKDEIHDSLLKLKEEIEDHQLRRDEGGDLQ
Ga0209554_10356232	3300027685	Marine	MEQILEKIEILIDDIERDSQLTKDEIHDSLLKLKEEIEDHQLRRDEGGDLQWDDLD
Ga0310342_1005995322	3300032820	Seawater	MEHILEKIEVLIDDMERDSQLTRDEIHDTLLKLKIEIEDYQLRMDEGGSLQWDDLD
Ga0310342_1017596471	3300032820	Seawater	MDNILEKLETIIDDIERDSQLTRNEILLALTILKAEIEDYQLSREEGSSLDWDDLD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F103405

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences