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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F103345 |
| Family Type | Metagenome / Metatranscriptome |
| Number of Sequences | 101 |
| Average Sequence Length | 57 residues |
| Representative Sequence | QFVGSRFAIRAEAKWLPILINPEVGAWACGTVGVGGCLVVLTGPLTQQFELSVGPVVRF |
| Number of Associated Samples | 85 |
| Number of Associated Scaffolds | 101 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | Yes |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 0.00 % |
| % of genes near scaffold ends (potentially truncated) | 0.00 % |
| % of genes from short scaffolds (< 2000 bps) | 0.00 % |
| Associated GOLD sequencing projects | 76 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.37 |
| Hidden Markov Model |
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| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (100.000 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere (9.901 % of family members) |
| Environment Ontology (ENVO) | Unclassified (53.465 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere (71.287 % of family members) |
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| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 0.00% β-sheet: 48.28% Coil/Unstructured: 51.72% | Feature Viewer |
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| Powered by Feature Viewer | |||||
| Structure Viewer | |
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| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.37 |
| Powered by PDBe Molstar | |
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| Pfam ID | Name | % Frequency in 101 Family Scaffolds |
|---|---|---|
| PF07519 | Tannase | 10.89 |
| PF11964 | SpoIIAA-like | 9.90 |
| PF12729 | 4HB_MCP_1 | 3.96 |
| PF13505 | OMP_b-brl | 3.96 |
| PF01436 | NHL | 2.97 |
| PF12681 | Glyoxalase_2 | 1.98 |
| PF07687 | M20_dimer | 1.98 |
| PF08818 | DUF1801 | 1.98 |
| PF12796 | Ank_2 | 1.98 |
| PF03551 | PadR | 1.98 |
| PF03641 | Lysine_decarbox | 0.99 |
| PF14863 | Alkyl_sulf_dimr | 0.99 |
| PF00326 | Peptidase_S9 | 0.99 |
| PF11172 | DUF2959 | 0.99 |
| PF03633 | Glyco_hydro_65C | 0.99 |
| PF13560 | HTH_31 | 0.99 |
| PF13606 | Ank_3 | 0.99 |
| PF00144 | Beta-lactamase | 0.99 |
| PF01565 | FAD_binding_4 | 0.99 |
| PF02954 | HTH_8 | 0.99 |
| PF13360 | PQQ_2 | 0.99 |
| PF00665 | rve | 0.99 |
| PF00135 | COesterase | 0.99 |
| PF13004 | BACON | 0.99 |
| PF01569 | PAP2 | 0.99 |
| PF01523 | PmbA_TldD | 0.99 |
| PF00034 | Cytochrom_C | 0.99 |
| PF13857 | Ank_5 | 0.99 |
| PF04960 | Glutaminase | 0.99 |
| COG ID | Name | Functional Category | % Frequency in 101 Family Scaffolds |
|---|---|---|---|
| COG5649 | Uncharacterized conserved protein, DUF1801 domain | Function unknown [S] | 1.98 |
| COG5646 | Iron-binding protein Fra/YdhG, frataxin family (Fe-S cluster biosynthesis) | Posttranslational modification, protein turnover, chaperones [O] | 1.98 |
| COG4430 | Uncharacterized conserved protein YdeI, YjbR/CyaY-like superfamily, DUF1801 family | Function unknown [S] | 1.98 |
| COG1695 | DNA-binding transcriptional regulator, PadR family | Transcription [K] | 1.98 |
| COG1733 | DNA-binding transcriptional regulator, HxlR family | Transcription [K] | 1.98 |
| COG1846 | DNA-binding transcriptional regulator, MarR family | Transcription [K] | 1.98 |
| COG2272 | Carboxylesterase type B | Lipid transport and metabolism [I] | 0.99 |
| COG4584 | Transposase | Mobilome: prophages, transposons [X] | 0.99 |
| COG3316 | Transposase (or an inactivated derivative), DDE domain | Mobilome: prophages, transposons [X] | 0.99 |
| COG2826 | Transposase and inactivated derivatives, IS30 family | Mobilome: prophages, transposons [X] | 0.99 |
| COG2801 | Transposase InsO and inactivated derivatives | Mobilome: prophages, transposons [X] | 0.99 |
| COG2367 | Beta-lactamase class A | Defense mechanisms [V] | 0.99 |
| COG0312 | Zn-dependent protease PmbA/TldA or its inactivated homolog | General function prediction only [R] | 0.99 |
| COG2066 | Glutaminase | Amino acid transport and metabolism [E] | 0.99 |
| COG1686 | D-alanyl-D-alanine carboxypeptidase | Cell wall/membrane/envelope biogenesis [M] | 0.99 |
| COG1680 | CubicO group peptidase, beta-lactamase class C family | Defense mechanisms [V] | 0.99 |
| COG1611 | Nucleotide monophosphate nucleosidase PpnN/YdgH, Lonely Guy (LOG) family | Nucleotide transport and metabolism [F] | 0.99 |
| COG1554 | Phosphatase/phosphodiesterase/kojibiose phosphorylase YcjT/PafA/Npp1, AlkP superfamily | Carbohydrate transport and metabolism [G] | 0.99 |
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| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 100.00 % |
| Visualization |
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| Powered by ApexCharts |
| Scaffold | Taxonomy | Length | IMG/M Link |
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| Habitat | Taxonomy | Distribution |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere | 9.90% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 7.92% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere | 6.93% |
| Arabidopsis Rhizosphere | Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere | 5.94% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere | 5.94% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere | 5.94% |
| Terrestrial Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil | 3.96% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere | 3.96% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere | 3.96% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil | 2.97% |
| Switchgrass Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere | 2.97% |
| Populus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere | 2.97% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere | 2.97% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 1.98% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil | 1.98% |
| Grass Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil | 1.98% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 1.98% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil | 1.98% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere | 1.98% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere | 1.98% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere | 1.98% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere | 1.98% |
| Natural And Restored Wetlands | Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands | 0.99% |
| Surface Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil | 0.99% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 0.99% |
| Hardwood Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil | 0.99% |
| Tropical Peatland | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland | 0.99% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 0.99% |
| Corn Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere | 0.99% |
| Sediment | Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment | 0.99% |
| Avena Fatua Rhizosphere | Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere | 0.99% |
| Arabidopsis Thaliana Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere | 0.99% |
| Arabidopsis Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere | 0.99% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere | 0.99% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere | 0.99% |
| Populus Endosphere | Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere | 0.99% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere | 0.99% |
| Arabidopsis Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere | 0.99% |
| Visualization |
|---|
| Powered by ApexCharts |
| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 2170459006 | Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect in plug lysis (for fosmid construction) 0-10cm | Environmental | Open in IMG/M |
| 3300003995 | Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleA_D2 | Environmental | Open in IMG/M |
| 3300004114 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5 | Environmental | Open in IMG/M |
| 3300004463 | Combined assembly of Arabidopsis thaliana microbial communities | Host-Associated | Open in IMG/M |
| 3300005328 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG | Host-Associated | Open in IMG/M |
| 3300005330 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG | Environmental | Open in IMG/M |
| 3300005332 | Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly) | Environmental | Open in IMG/M |
| 3300005333 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG | Host-Associated | Open in IMG/M |
| 3300005338 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 | Host-Associated | Open in IMG/M |
| 3300005341 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG | Environmental | Open in IMG/M |
| 3300005347 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG | Host-Associated | Open in IMG/M |
| 3300005354 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG | Host-Associated | Open in IMG/M |
| 3300005355 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG | Host-Associated | Open in IMG/M |
| 3300005356 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG | Host-Associated | Open in IMG/M |
| 3300005364 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG | Host-Associated | Open in IMG/M |
| 3300005455 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG | Host-Associated | Open in IMG/M |
| 3300005466 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG | Environmental | Open in IMG/M |
| 3300005526 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 | Environmental | Open in IMG/M |
| 3300005535 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG | Environmental | Open in IMG/M |
| 3300005539 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 | Host-Associated | Open in IMG/M |
| 3300005564 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG | Host-Associated | Open in IMG/M |
| 3300005616 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 | Host-Associated | Open in IMG/M |
| 3300005618 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 | Host-Associated | Open in IMG/M |
| 3300005719 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 | Host-Associated | Open in IMG/M |
| 3300005764 | Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2) | Environmental | Open in IMG/M |
| 3300005834 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 | Host-Associated | Open in IMG/M |
| 3300005840 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 | Host-Associated | Open in IMG/M |
| 3300005841 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 | Host-Associated | Open in IMG/M |
| 3300005843 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 | Host-Associated | Open in IMG/M |
| 3300006051 | Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 | Host-Associated | Open in IMG/M |
| 3300006358 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 | Host-Associated | Open in IMG/M |
| 3300006578 | Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMA (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300006853 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4 | Host-Associated | Open in IMG/M |
| 3300006881 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 | Host-Associated | Open in IMG/M |
| 3300006953 | Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300006969 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 | Host-Associated | Open in IMG/M |
| 3300009093 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG | Host-Associated | Open in IMG/M |
| 3300009156 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2) | Host-Associated | Open in IMG/M |
| 3300009176 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG | Host-Associated | Open in IMG/M |
| 3300009177 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG | Host-Associated | Open in IMG/M |
| 3300009553 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG | Host-Associated | Open in IMG/M |
| 3300010400 | Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2 | Environmental | Open in IMG/M |
| 3300010403 | Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3 | Environmental | Open in IMG/M |
| 3300012212 | Combined assembly of Hopland grassland soil | Host-Associated | Open in IMG/M |
| 3300012507 | Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.7.yng.070610 | Host-Associated | Open in IMG/M |
| 3300012905 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S013-104B-2 | Environmental | Open in IMG/M |
| 3300012913 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S043-104R-2 | Environmental | Open in IMG/M |
| 3300012958 | Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG | Environmental | Open in IMG/M |
| 3300012985 | Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG | Environmental | Open in IMG/M |
| 3300012989 | Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG | Environmental | Open in IMG/M |
| 3300013297 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG | Host-Associated | Open in IMG/M |
| 3300014326 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG | Host-Associated | Open in IMG/M |
| 3300014745 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG | Host-Associated | Open in IMG/M |
| 3300014968 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG | Host-Associated | Open in IMG/M |
| 3300015371 | Combined assembly of cpr5 and col0 rhizosphere and soil | Host-Associated | Open in IMG/M |
| 3300015372 | Soil combined assembly | Host-Associated | Open in IMG/M |
| 3300015373 | Combined assembly of cpr5 rhizosphere | Host-Associated | Open in IMG/M |
| 3300015374 | Col-0 rhizosphere combined assembly | Host-Associated | Open in IMG/M |
| 3300017792 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG | Host-Associated | Open in IMG/M |
| 3300018032 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_BV01_MP10_20_MG | Environmental | Open in IMG/M |
| 3300018469 | Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T | Environmental | Open in IMG/M |
| 3300018476 | Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T | Environmental | Open in IMG/M |
| 3300025924 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025926 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025934 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025936 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025938 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025940 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025960 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025972 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025981 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026088 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026089 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026118 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026121 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300028381 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300028592 | Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30 | Environmental | Open in IMG/M |
| 3300028802 | Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S | Environmental | Open in IMG/M |
| 3300031547 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4 | Environmental | Open in IMG/M |
| 3300031720 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515 | Environmental | Open in IMG/M |
| 3300031724 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20 | Environmental | Open in IMG/M |
| 3300031954 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2) | Environmental | Open in IMG/M |
| 3300032039 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21 | Environmental | Open in IMG/M |
| 3300032075 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3 | Environmental | Open in IMG/M |
| 3300034150 | Sediment microbial communities from East River floodplain, Colorado, United States - 25_j17 | Environmental | Open in IMG/M |
| Geographical Distribution | |
|---|---|
| Zoom: | Powered by OpenStreetMap |
| ⦗Top⦘ |
| Protein ID | Sample Taxon ID | Habitat | Sequence |
| L01_07182500 | 2170459006 | Grass Soil | LKQFLGSRFALRAEAKWLPILIDPEVGAWACGTVAVGGCLVVLTGPLTQQFELSFGPVVR |
| L01_05725070 | 2170459006 | Grass Soil | GSRFAIRAEAKWLPILINPEVGAWACGTVGVGGCFVVLTGPMTQQFELSVGPVLRF |
| Ga0055438_100939203 | 3300003995 | Natural And Restored Wetlands | KQFLGSRFAIRAEAQWLPIVVEPSVSGFACGAIQPGGCLVLLSGRLAQQFHLSVGPAVRF |
| Ga0062593_1000731041 | 3300004114 | Soil | QFLGSRFAIRAEVKWLPILIDPEVGAWACGTVGVGGCLVVLTGPMTQQFELSVGPVVRF* |
| Ga0062593_1028133951 | 3300004114 | Soil | GAGLKQFLGSRLAIRAEAQWLPILVEPAVSGFACGTIQFGGCLVVLNSELVQQYQITIGPVVRF* |
| Ga0063356_1045115891 | 3300004463 | Arabidopsis Thaliana Rhizosphere | LAIRAEAGWLPIWVAPEVGGFACGTIGVGGCFVVLDGTLMQQYEMSIGPVIRF* |
| Ga0070676_112923092 | 3300005328 | Miscanthus Rhizosphere | FSFGFGAGLKQFLGSRFALRAEAEWLPIVVEPSVDGFACGTIQFGGCLVILNGELVQQFQLSIGPVVRF* |
| Ga0070690_1016797002 | 3300005330 | Switchgrass Rhizosphere | APEVSSWACGVVGAGGCVVVLSGPAVQQFELSIGPVVRF* |
| Ga0066388_1066566742 | 3300005332 | Tropical Forest Soil | PIWIDPEVGAWACGTVGIGGCIVVLNGRLTQQFELSVGPVVRF* |
| Ga0070677_107937081 | 3300005333 | Miscanthus Rhizosphere | FGAGLKQFLGSRLAIRAEAEWLPILIEPSVSGFACGTIQFGGCLVVLNGELVQQFHFSIGPVIRF* |
| Ga0068868_1009376541 | 3300005338 | Miscanthus Rhizosphere | FSFGFGGGLKQFLGSRFGIRAEAQWLPILVDPSVSGFACGAVQFGGCLVLLSGDLVQQFQLSIGPVVRF* |
| Ga0068868_1010283651 | 3300005338 | Miscanthus Rhizosphere | FGAGLKQFVGSRFAIRGDAQWLPIVVEPSVSGFACGTIQYGGCLVVLNGELVQQFQLSVGPVVRF* |
| Ga0070691_102200201 | 3300005341 | Corn, Switchgrass And Miscanthus Rhizosphere | SRFAIRAEAKWLPILIEPEVGGWACGTVGVGGCLVVLNGRLMQQFELSIGPVVRF* |
| Ga0070668_1018673431 | 3300005347 | Switchgrass Rhizosphere | KWLPILIDPEVGAWACGTVGVGGCLVVLSGPLTQQFELSVGPVLRF* |
| Ga0070675_1009017271 | 3300005354 | Miscanthus Rhizosphere | QFVGSRFALRGEVQWLPILIDPEVGAWACGTAGVGGCLVVLTGRLTQQFELSVGPVLRF* |
| Ga0070671_1013484681 | 3300005355 | Switchgrass Rhizosphere | FSFGFGGGLKQFLGSRFGIRAEAQWLPILVDPSVSGFACGTIQLGGCLVVLSGDLVQQFQLSIGPVVRF* |
| Ga0070674_1021266822 | 3300005356 | Miscanthus Rhizosphere | AGLKQFLGSRLAIRAEAQWVPIVVEPSVSGFACGTIQVGGCLVVLNGELVQQFHLSIGPVVRF* |
| Ga0070673_1007118683 | 3300005364 | Switchgrass Rhizosphere | WLPILIAPEVSSWACGVVGAGGCVVVLSGPVVQQFELSIGPVVRF* |
| Ga0070673_1014571391 | 3300005364 | Switchgrass Rhizosphere | AGLKQFLGSRLAIRAEAQWLPIVLDPSVSGFACGTIQVGGCLVLLNGELVQQFQLSIGPVLRF* |
| Ga0070663_1021008701 | 3300005455 | Corn Rhizosphere | DPQVGPWACGTIGVNGCVVFLSGPLTQQFEISVGPVVRF* |
| Ga0070685_112438211 | 3300005466 | Switchgrass Rhizosphere | FGTGLKQFLGSHFAIKAEAKWLPILIAPEVSSWACGVVGAGGCVVVLSGPAVQQFELSIGPVVRF* |
| Ga0073909_106476711 | 3300005526 | Surface Soil | WLPILIDPEVGAWACGTLAGGGCLVVLTGPLTQQFELSVGPVVRF* |
| Ga0070684_1011629891 | 3300005535 | Corn Rhizosphere | KWLPILLDPHVRAWACGTVGVGGCLVVVSGPVTQQFEFSVGPVVRF* |
| Ga0068853_1006582583 | 3300005539 | Corn Rhizosphere | RFSFGFGAGLKQFLGSRLAIRAEAQWLPILVEPSVSGFACGTIQFGGCLVVLHGELVQQFQLSIGPVVRF* |
| Ga0070664_1008503931 | 3300005564 | Corn Rhizosphere | GFGAGLKQFLGSWFAIRAEAQWLPIVVEPSVSGFACGTIQFGGCLVVLNGELVQQFQLSIGPVVRF* |
| Ga0068852_1012206991 | 3300005616 | Corn Rhizosphere | AKWLPILIDPEVGAWACGTAAVGACLVVLTGSLTQQFELSVGPVVRF* |
| Ga0068864_1000989111 | 3300005618 | Switchgrass Rhizosphere | AIRAEAKWLPILIDPQVGPWACGTIGVNGCVVFLSGPLTQQFEISVGPVVRF* |
| Ga0068864_1021816432 | 3300005618 | Switchgrass Rhizosphere | FALRGEVQWLPILIDPEVGSWACGTAGVGGCLVVLTGRLTQQFELSVGPVLRF* |
| Ga0068861_1026242321 | 3300005719 | Switchgrass Rhizosphere | QFLGSKFAIRAEAHWLPILIEPEVGSFGCGTINVGGCFVVLNGKLTQQFEMSIGPVVSF* |
| Ga0066903_1017771742 | 3300005764 | Tropical Forest Soil | LVDPEVNSFACGTGPVGGCLVLLDGRLTQQFEVSIGPVVRF* |
| Ga0068851_107463222 | 3300005834 | Corn Rhizosphere | GQRFAIRAEAKWLPILIDPQVGPWACGTIGVNGCVVFLSGPLTQQFEISVGPVVRF* |
| Ga0068870_106240012 | 3300005840 | Miscanthus Rhizosphere | GFGAGLKQFVGSRFALRGEVQWLPILIDPEVGSWACGTAGVGGCLVVLTGRLTQQFELSVGPVLRF* |
| Ga0068863_1023419502 | 3300005841 | Switchgrass Rhizosphere | AEAKWLPILIAPEVSSWACGVVGAGGCVVVLSGPAVQQFELSIGPVVRF* |
| Ga0068863_1026229132 | 3300005841 | Switchgrass Rhizosphere | FGFGAGLKQFLGSRFAIRADAQWLPVLVDPSVGRFACGTIQFGGCLVLLSGELLQQFQLTIGPVVRF* |
| Ga0068860_1006034991 | 3300005843 | Switchgrass Rhizosphere | AEAKWLPILIDPEVGGWACGTIGVGGCFAVLTGPLTQQFELSVGPVLRF* |
| Ga0075364_101940382 | 3300006051 | Populus Endosphere | RFAIRAEASWLPILVDPEVSTFACGTGPIGGCLVVLNGRLTQQFEVSVGPVVRF* |
| Ga0068871_1001751421 | 3300006358 | Miscanthus Rhizosphere | AGLKQFVGSRFAIRAEAKWLPILIAPEVSSWACGVVGVGGCIVVLTGPAAQQFELSVGPVLRF* |
| Ga0074059_117248531 | 3300006578 | Soil | LAIRAEAKWLPILIDPEVGAWACGTVGVGGCLVVLTGPAAQQFELSVGPVVRF* |
| Ga0075420_1008638051 | 3300006853 | Populus Rhizosphere | FGFGAGLKQFLGSRLAIRAEAQWLPILVEPSVSGFACGTIQFGGCLVVLNGELVQQFQVSIGPVVRF* |
| Ga0068865_1008870181 | 3300006881 | Miscanthus Rhizosphere | PWACGTVGVNGCVVFLSGPLTQQFEVSVGPVVRF* |
| Ga0074063_141515233 | 3300006953 | Soil | RFAIRAEAKWLPILIDPEVGAWACGTLAGGGCLVVLTGPLTQQFELSVGPVVRF* |
| Ga0075419_114613141 | 3300006969 | Populus Rhizosphere | LGPRLAIRAEVQWLPILINPEVGAWACGTVGVGGCLVVLTGPLTQQFEMSVGPVLRF* |
| Ga0105240_116244021 | 3300009093 | Corn Rhizosphere | AEAKWLPILIDPQVGSWACGTVGVGGCLVVLNGRLTQQFEVSVGPVVRF* |
| Ga0111538_110547102 | 3300009156 | Populus Rhizosphere | AGLKQFLGSRLAIRAEAQWLPIVFDPSVSGFACGTIQFGGCFVVLSGELVQQFQLSIGPVVRF* |
| Ga0105242_123487312 | 3300009176 | Miscanthus Rhizosphere | FGAGLKQFLGSRLAIRAEAQWLPIVVEPSVSGFACGTIQFGGCLVVLNGELVQQFQLSIGPVVRF* |
| Ga0105248_122851561 | 3300009177 | Switchgrass Rhizosphere | GCGPGIKKFMGSRFALRGEVQWLPILIDHEVGAWACGTAGVGGCLVVLTGRLTQQFELSVGPVLRF* |
| Ga0105248_132154011 | 3300009177 | Switchgrass Rhizosphere | FSFGFGAGLKQFLGSRFAIRADAQWLPVLVDPSVGRFACGTIQFGGCLVLLSGELLQQFQLTIGPVVRF* |
| Ga0105249_102945274 | 3300009553 | Switchgrass Rhizosphere | RFSFGFGAGLKQFLGSRLAIRAEAQWLPILVEPSVSGFACGTIQFGGCLVVLNGELVQQFQLSIGPVVKF* |
| Ga0105249_134019891 | 3300009553 | Switchgrass Rhizosphere | KQFLGSRFAIRAEAKWLPILIDPEVGGWACGTIGVGGCFAVLTGPLTQQFELSVGPVLRF |
| Ga0134122_122246641 | 3300010400 | Terrestrial Soil | IRAEAHWLPIWIEPEVGSFACGTVGVDGCFVILTGRTTQQFELRIGPVVRF* |
| Ga0134123_108452813 | 3300010403 | Terrestrial Soil | SRFAIRAEAKWLPILIDPEVGGWACGTIGVGGCFAVLTGPLTQQFELSVGPVLRF* |
| Ga0134123_123927632 | 3300010403 | Terrestrial Soil | PILIDPEVGAWACGTAGVGGCLVVLTGPLTQQFEFSVGPVVRF* |
| Ga0134123_125269951 | 3300010403 | Terrestrial Soil | WLPILIDPEVGAWACGTVGAGGCLVVLTGRLTQQFELSVGPVVRF* |
| Ga0150985_1002572222 | 3300012212 | Avena Fatua Rhizosphere | RFSFGFGGGLKQFLGSRFAIRAEAQWLPMLVEPSVSGFGCGTVQYGGCLVLLNGELVQQFQLSIGPVVRF* |
| Ga0157342_10788462 | 3300012507 | Arabidopsis Rhizosphere | RLAIRAEGHWLPIWIDPEVGGFGCNSVTGGCLVFLNGRLTQQFELSVGPVVRF* |
| Ga0157296_101764472 | 3300012905 | Soil | GFGAGLKQFLGSRLAIRAEAQWLPILVEPSVSGFACGTIQFGGCLVVLHGELVQQFQLSIGPVVRF* |
| Ga0157298_101409571 | 3300012913 | Soil | ILIDPQVGPWACGTVGVNGCVVFLSGPLTQQFEISVGPVVRF* |
| Ga0164299_103769021 | 3300012958 | Soil | KWLPILINPEVGAWACGTAAVGGCLVVLTGSLTQQFELSIGPVVRF* |
| Ga0164308_107605431 | 3300012985 | Soil | KQFVGSRFAIRAEAKWLPILINPEVGAWACGTAAVGGCLVVLTGSLTQQFELSIGPVVRF |
| Ga0164305_115949821 | 3300012989 | Soil | SRFAIRAEAKWLPILIDPEVGAWACGTVGVSGCLVVLTGSLTQQFELSVGPVVRF* |
| Ga0157378_120006162 | 3300013297 | Miscanthus Rhizosphere | AEAKWLPIRIDPQVGPWACGTIGVNGCVVFLSGPLTQQFEISVGPVVRF* |
| Ga0157380_123662182 | 3300014326 | Switchgrass Rhizosphere | LDDGFIRFSFGFGAGLKQFLASRFAIRAEAKWLPILIEPEVGGWACGTVGVGGCLVVLNGRLMQQFELSVGPVVRF* |
| Ga0157380_132649131 | 3300014326 | Switchgrass Rhizosphere | PILIDPEVGAWACGTVGAGGCLVVLTGRLTQQFELSVGPVVRF* |
| Ga0157377_105682641 | 3300014745 | Miscanthus Rhizosphere | IDPEVGAWACGTVGFGGCLVVLTGPLTQQFELSVGPVVRF* |
| Ga0157379_111176852 | 3300014968 | Switchgrass Rhizosphere | IRAEAKWLPILIAPEVSSWACGVVGVGGCIVVLTGPAAQQFELSVGPVLRF* |
| Ga0132258_119983982 | 3300015371 | Arabidopsis Rhizosphere | GLKQFLGRRFAIRAEGKWLPILIDPEVGAWVCGTVGVGGCIVVLTGSLTQQFELSIGPVVRF* |
| Ga0132258_136605702 | 3300015371 | Arabidopsis Rhizosphere | RFSFGFGAGLKQFLGSRFAIRAEAKWLPILIDPEVGAWACGTVGVGGCLAVLTGSLTQQFELSVGPTVRF* |
| Ga0132256_1014214161 | 3300015372 | Arabidopsis Rhizosphere | VSWLPIWIDPEVGAFACGTIGVGGCVVVLNGRLTQQFELSVGPVVRF* |
| Ga0132257_1016450503 | 3300015373 | Arabidopsis Rhizosphere | LGAGLKQFVGTRLAIRAEAQWLPILVAPSVSGFACGTVQIGGCLVVLNGKLVQQFLLSVGPVVRF* |
| Ga0132257_1046002441 | 3300015373 | Arabidopsis Rhizosphere | QFFGQRFAIRAEAKWLPILIDTQVGPWACGTIGVNRCVVFLSGPLTQQFEISVGPVVRF* |
| Ga0132255_1003213581 | 3300015374 | Arabidopsis Rhizosphere | LPIWIDTEVGAFACGTIGVGGCVVVLNGRLTQQFELSVGPVVRF* |
| Ga0132255_1042417013 | 3300015374 | Arabidopsis Rhizosphere | TRLSFGLGAGLKQFIGPHLAIRAEAKWLPIWINPEVGAFACGAAGVGGCVVVLTGPLTEQFELSVGPVVRF* |
| Ga0163161_119474322 | 3300017792 | Switchgrass Rhizosphere | QRFAIRAEAKWLPILIDPQVGPWACGTVGVNGCVVFLSGPLTQQFEISVGPVVRF |
| Ga0187788_104423302 | 3300018032 | Tropical Peatland | HWLPIWIEPEIGSFGCNSVTGGCFLVLHGRLTQQFEMSVGPVLRF |
| Ga0190270_101878412 | 3300018469 | Soil | FGGGLKQFLGSRFAIRAEAKWLPILIDPKVGSWACGTVGVGGCLVVLSGPLAQQFELSVGPVVRF |
| Ga0190274_105586541 | 3300018476 | Soil | RFSFGFGAGLKQFVGRRFAIRAEAKWLPILIEPEVGGWACGTVGVGGCLVVLNGRLMQQFELSVGPVVRF |
| Ga0207694_118343962 | 3300025924 | Corn Rhizosphere | GLKQFIGRRFAIRAEATWLPIVVEPSVGGFACGTLQAGGCLVVLDGELASQFQLTIGPVVRF |
| Ga0207659_114873482 | 3300025926 | Miscanthus Rhizosphere | LPILIDPQVGPWACGTIGVNGCVVFLSGPLTQQFEISVGPVARF |
| Ga0207659_115418351 | 3300025926 | Miscanthus Rhizosphere | RADAKWLPILIDPEVGAWACGTVGFGGCLVVLTGPLTQQFELSVGPVVRF |
| Ga0207686_104389102 | 3300025934 | Miscanthus Rhizosphere | GFIRFSFGFGAGLKQFLGSRFAIRAEAKWLPILIEPEVGGWACGTVGVGGCLVVLNGRLMQQFELSIGPVVRF |
| Ga0207670_106658702 | 3300025936 | Switchgrass Rhizosphere | GLKQFLGSRFAIRAEAKWLPILINPEVGAFACGTVRLGGCLVVLTGPVTQQFEISVGPVVRF |
| Ga0207704_100282751 | 3300025938 | Miscanthus Rhizosphere | TGLKQFLGSHFAIKAEAKWLPILIAPEVSSWACGVVGAGGCVVVLSGPAVQQFELSIGPVVRF |
| Ga0207691_117216722 | 3300025940 | Miscanthus Rhizosphere | QFVGSRFAIRAEAKWLPILINPEVGAWACGTVGVGGCLVVLTGPLTQQFELSVGPVVRF |
| Ga0207651_108994163 | 3300025960 | Switchgrass Rhizosphere | WLPILIAPEVSSWACGVVGAGGCVVVLSGPVVQQFELSIGPVVRF |
| Ga0207668_110673292 | 3300025972 | Switchgrass Rhizosphere | GPWACGTVGVNGCVVFLSGPLTQQFEISVGPVVRF |
| Ga0207640_121316561 | 3300025981 | Corn Rhizosphere | FGAGLKQFLGSRLAIRAEAQWLPILVEPSVSGFACGTIQFGGCLVVLHGELVQQFQLSIGPVVRF |
| Ga0207641_103221314 | 3300026088 | Switchgrass Rhizosphere | FLGSHFAIKAEAKWLPILIAPEVSSWACGVVGAGGCLVVLTGPAVQQFELSIGPVVRF |
| Ga0207648_106843264 | 3300026089 | Miscanthus Rhizosphere | EVSSWACGVVGAGGCVVVLSGPAVQQFELSIGPVVRF |
| Ga0207675_1019157841 | 3300026118 | Switchgrass Rhizosphere | LGSRFAIRAEAKWLPIAIDPQVGSWACGTVGFGGCFVVLNGKLTQQFELSVGPVFRF |
| Ga0207675_1026785132 | 3300026118 | Switchgrass Rhizosphere | QFLGSKFAIRAEAHWLPILIEPEVGSFGCGTINVGGCFVVLNGKLTQQFEMSIGPVVSF |
| Ga0207683_116930272 | 3300026121 | Miscanthus Rhizosphere | WLPILVDPEVGAFACGTVGIGGCLVVLNGELTQQFELSVGPVVRF |
| Ga0268264_104743043 | 3300028381 | Switchgrass Rhizosphere | QFLGSHFAIKAEAKWLPILIAPEVSSWACGVVGAGGCVVVLSGPAVQQFELSIGPVVRF |
| Ga0247822_115137112 | 3300028592 | Soil | LKQFLGSWLAIRAEAQWLPIVVEPSVSGFACGTIQFGGCLVVLNGELVQQFQLSIGPVVR |
| Ga0307503_105464222 | 3300028802 | Soil | ILIDPQVGPWACGPVGIGGCVVVVSGPLAQQFEMSVGPVLRF |
| Ga0310887_101020672 | 3300031547 | Soil | RFSFGFGAGLKQFLGSRLAIRAEAQWLPIVVEPSVEGFACGTVQFGGCLVILQGELVQQFQLSIGPVVRF |
| Ga0307469_125064341 | 3300031720 | Hardwood Forest Soil | GFAAGLKEFLGSRFAIRAEAKWLPILIDPEVGAWACGTVGVGGCLVVLNGPLTQQFELSVGPVVRF |
| Ga0318500_101106501 | 3300031724 | Soil | GLKQFLGSKLAMRAEADWLPILIEPEVGAWACGTLGLGGCVVVLNGRLTQQFQLSIGPTVRF |
| Ga0306926_101042591 | 3300031954 | Soil | GLKQFLGSKLAMRAEADWLPILIEPEVGAWACGTLGLGGCVVILNGRLTQQFQLSIGPTVRF |
| Ga0318559_101754712 | 3300032039 | Soil | FLGSKLAMRAEADWLPILIEPEVGAWACGTLGLGGCVVILNGRLTQQFQLSIGPTVRF |
| Ga0310890_108851502 | 3300032075 | Soil | ILIDPQVGPWACGTVGVGGCVVFLTGPLTQQFELSIGPVVRF |
| Ga0364933_070223_1_189 | 3300034150 | Sediment | GLKQFLGSHFAIKAEAKWLPILIAPEVSSWACGVVGVGGCIVVLTGPAAQQFELSIGPVVRF |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |