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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F103339 |
| Family Type | Metagenome / Metatranscriptome |
| Number of Sequences | 101 |
| Average Sequence Length | 49 residues |
| Representative Sequence | MAVSLNRRDVLKGALGVFATWTSSRVLCAQQAFGGVRRLTDQMTVVDGGGSN |
| Number of Associated Samples | 96 |
| Number of Associated Scaffolds | 101 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | Yes |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 75.00 % |
| % of genes near scaffold ends (potentially truncated) | 3.96 % |
| % of genes from short scaffolds (< 2000 bps) | 2.97 % |
| Associated GOLD sequencing projects | 94 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.34 |
| Hidden Markov Model |
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| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (96.040 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (15.842 % of family members) |
| Environment Ontology (ENVO) | Unclassified (39.604 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere (46.535 % of family members) |
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| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Globular | Signal Peptide: | Yes | Secondary Structure distribution: | α-helix: 52.50% β-sheet: 0.00% Coil/Unstructured: 47.50% | Feature Viewer |
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| Structure Viewer | |
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| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.34 |
| Powered by PDBe Molstar | |
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| Pfam ID | Name | % Frequency in 101 Family Scaffolds |
|---|---|---|
| PF07586 | HXXSHH | 59.41 |
| PF07624 | PSD2 | 2.97 |
| PF07627 | PSCyt3 | 1.98 |
| PF07637 | PSD5 | 0.99 |
| PF07631 | PSD4 | 0.99 |
| PF00753 | Lactamase_B | 0.99 |
| PF10518 | TAT_signal | 0.99 |
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| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 96.04 % |
| All Organisms | root | All Organisms | 3.96 % |
| Visualization |
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| Powered by ApexCharts |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| 3300005343|Ga0070687_100182636 | All Organisms → cellular organisms → Bacteria | 1258 | Open in IMG/M |
| 3300005441|Ga0070700_100803746 | All Organisms → cellular organisms → Bacteria | 758 | Open in IMG/M |
| 3300005543|Ga0070672_100444278 | All Organisms → cellular organisms → Bacteria | 1116 | Open in IMG/M |
| 3300031908|Ga0310900_10052239 | All Organisms → cellular organisms → Bacteria | 2408 | Open in IMG/M |
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| Habitat | Taxonomy | Distribution |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 15.84% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil | 9.90% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 4.95% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere | 4.95% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere | 4.95% |
| Soil | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil | 3.96% |
| Agricultural Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil | 3.96% |
| Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere | 3.96% |
| Groundwater Sediment | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment | 2.97% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere | 2.97% |
| Populus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere | 2.97% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere | 2.97% |
| Groundwater Sediment | Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment | 1.98% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil | 1.98% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 1.98% |
| Switchgrass Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere | 1.98% |
| Arabidopsis Rhizosphere | Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere | 1.98% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere | 1.98% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere | 1.98% |
| Watersheds | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds | 0.99% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 0.99% |
| Vadose Zone Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil | 0.99% |
| Serpentine Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil | 0.99% |
| Surface Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil | 0.99% |
| Unplanted Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil | 0.99% |
| Switchgrass Rhizosphere | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere | 0.99% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil | 0.99% |
| Hardwood Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil | 0.99% |
| Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil | 0.99% |
| Corn Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere | 0.99% |
| Plant Litter | Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter | 0.99% |
| Exposed Rock | Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Exposed Rock | 0.99% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere | 0.99% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere | 0.99% |
| Tabebuia Heterophylla Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere | 0.99% |
| Arabidopsis Thaliana Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere | 0.99% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere | 0.99% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere | 0.99% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere | 0.99% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere | 0.99% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere | 0.99% |
| Visualization |
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| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 3300000953 | Soil microbial communities from Great Prairies - Kansas Corn soil | Environmental | Open in IMG/M |
| 3300005293 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 | Host-Associated | Open in IMG/M |
| 3300005295 | Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 | Environmental | Open in IMG/M |
| 3300005330 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG | Environmental | Open in IMG/M |
| 3300005333 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG | Host-Associated | Open in IMG/M |
| 3300005343 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG | Environmental | Open in IMG/M |
| 3300005345 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG | Environmental | Open in IMG/M |
| 3300005347 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG | Host-Associated | Open in IMG/M |
| 3300005356 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG | Host-Associated | Open in IMG/M |
| 3300005406 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG | Environmental | Open in IMG/M |
| 3300005441 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG | Environmental | Open in IMG/M |
| 3300005445 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG | Environmental | Open in IMG/M |
| 3300005471 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG | Environmental | Open in IMG/M |
| 3300005539 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 | Host-Associated | Open in IMG/M |
| 3300005543 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG | Host-Associated | Open in IMG/M |
| 3300005548 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG | Host-Associated | Open in IMG/M |
| 3300005564 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG | Host-Associated | Open in IMG/M |
| 3300005617 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 | Host-Associated | Open in IMG/M |
| 3300005718 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 | Host-Associated | Open in IMG/M |
| 3300005719 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 | Host-Associated | Open in IMG/M |
| 3300005840 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 | Host-Associated | Open in IMG/M |
| 3300005985 | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 | Host-Associated | Open in IMG/M |
| 3300006049 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 | Host-Associated | Open in IMG/M |
| 3300006358 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 | Host-Associated | Open in IMG/M |
| 3300006844 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 | Host-Associated | Open in IMG/M |
| 3300006876 | Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200 | Environmental | Open in IMG/M |
| 3300006894 | Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control | Environmental | Open in IMG/M |
| 3300007004 | Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost | Environmental | Open in IMG/M |
| 3300009092 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG | Host-Associated | Open in IMG/M |
| 3300009098 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG | Host-Associated | Open in IMG/M |
| 3300009147 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) | Host-Associated | Open in IMG/M |
| 3300010036 | Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26 | Environmental | Open in IMG/M |
| 3300011120 | Combined assembly of Microbial Forest Soil metaT | Environmental | Open in IMG/M |
| 3300011423 | Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT119_2 | Environmental | Open in IMG/M |
| 3300011427 | Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT418_2 | Environmental | Open in IMG/M |
| 3300012496 | Unplanted soil (control) microbial communities from North Carolina - M.Soil.4.yng.090610 | Environmental | Open in IMG/M |
| 3300012511 | Unplanted soil (control) microbial communities from North Carolina - M.Soil.8.old.080610_10 | Environmental | Open in IMG/M |
| 3300012893 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S059-202B-1 | Environmental | Open in IMG/M |
| 3300012897 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S074-202C-1 | Environmental | Open in IMG/M |
| 3300012902 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S169-409C-1 | Environmental | Open in IMG/M |
| 3300012908 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S089-202R-1 | Environmental | Open in IMG/M |
| 3300012915 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S103-311B-2 | Environmental | Open in IMG/M |
| 3300012929 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300012960 | Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG | Environmental | Open in IMG/M |
| 3300013306 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG | Host-Associated | Open in IMG/M |
| 3300013308 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG | Host-Associated | Open in IMG/M |
| 3300014487 | Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG | Environmental | Open in IMG/M |
| 3300015201 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1 (version 2) | Environmental | Open in IMG/M |
| 3300015373 | Combined assembly of cpr5 rhizosphere | Host-Associated | Open in IMG/M |
| 3300015374 | Col-0 rhizosphere combined assembly | Host-Associated | Open in IMG/M |
| 3300016319 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H | Environmental | Open in IMG/M |
| 3300016371 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 | Environmental | Open in IMG/M |
| 3300017792 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG | Host-Associated | Open in IMG/M |
| 3300018054 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1 | Environmental | Open in IMG/M |
| 3300018061 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1 | Environmental | Open in IMG/M |
| 3300018073 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1 | Environmental | Open in IMG/M |
| 3300018920 | Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 IS | Environmental | Open in IMG/M |
| 3300019259 | Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300021078 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo | Environmental | Open in IMG/M |
| 3300021953 | Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R07 | Environmental | Open in IMG/M |
| 3300023067 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S221-509R-5 | Environmental | Open in IMG/M |
| 3300023266 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S220-509R-4 | Environmental | Open in IMG/M |
| 3300023270 | Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L169-409R-5 | Environmental | Open in IMG/M |
| 3300025901 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025903 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025917 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025927 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025937 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025942 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026035 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300027533 | Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700 (SPAdes) | Environmental | Open in IMG/M |
| 3300027665 | Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 S PM (SPAdes) | Host-Associated | Open in IMG/M |
| 3300027821 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes) | Environmental | Open in IMG/M |
| 3300027910 | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes) | Environmental | Open in IMG/M |
| 3300028380 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300028589 | Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day1 | Environmental | Open in IMG/M |
| 3300028819 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153 | Environmental | Open in IMG/M |
| 3300028828 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202 | Environmental | Open in IMG/M |
| 3300031058 | Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_184 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300031538 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1 | Environmental | Open in IMG/M |
| 3300031740 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05 | Environmental | Open in IMG/M |
| 3300031847 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4 | Environmental | Open in IMG/M |
| 3300031854 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1 | Environmental | Open in IMG/M |
| 3300031901 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 | Host-Associated | Open in IMG/M |
| 3300031908 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1 | Environmental | Open in IMG/M |
| 3300031911 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 | Host-Associated | Open in IMG/M |
| 3300031944 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1 | Environmental | Open in IMG/M |
| 3300032002 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 | Host-Associated | Open in IMG/M |
| 3300032004 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 | Host-Associated | Open in IMG/M |
| 3300032157 | Garden soil microbial communities collected in Santa Monica, California, United States - V. faba soil | Environmental | Open in IMG/M |
| 3300032421 | Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NN3 | Environmental | Open in IMG/M |
| 3300033412 | Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC | Environmental | Open in IMG/M |
| 3300033550 | Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4 | Environmental | Open in IMG/M |
| 3300034644 | Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_123 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300034669 | Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8R3 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300034678 | Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48R4 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| Geographical Distribution | |
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| Protein ID | Sample Taxon ID | Habitat | Sequence |
| JGI11615J12901_140319341 | 3300000953 | Soil | MAVSLNRREVLKGALGVFATWASCGVLSAQQAFGGVRRLTD |
| Ga0065715_100607421 | 3300005293 | Miscanthus Rhizosphere | MTIMNRRDVLKGALGAFASWTPARVLSAQQAFGGVRRLTDQMTVVDGG |
| Ga0065707_104974661 | 3300005295 | Switchgrass Rhizosphere | MAVSLHRRDVLKGALGLFATWVSSRVLSAQQAFSGGRRLTDQ |
| Ga0070690_1010480282 | 3300005330 | Switchgrass Rhizosphere | MAVPLNRREVLKGALGLFATWASSRVLSAQQAFGGVRRLTDQMT |
| Ga0070677_101600822 | 3300005333 | Miscanthus Rhizosphere | VALNRREVLQGALGVFATWACSRVLSAQQPFRGGGRLNDQMTVVDGGGSNVLAFSTGEG |
| Ga0070677_102722162 | 3300005333 | Miscanthus Rhizosphere | MAVSLNRRDVLKGALGVFATWTSSGVLCAQQASGGVRRLTDQMT |
| Ga0070687_1001826362 | 3300005343 | Switchgrass Rhizosphere | MPVSLNRRDVLKAALGVLATWTSSRVLSAQQAFGGVRRLTDQMTLVDAGGSNVLAFFTGE |
| Ga0070692_106315731 | 3300005345 | Corn, Switchgrass And Miscanthus Rhizosphere | VSLNRRDVLKGALGVFAAWASSRVLGAQLASVGVRRLTDQMRVADGGGSNVLTF |
| Ga0070668_1020292961 | 3300005347 | Switchgrass Rhizosphere | MAVSLNRRNVLKGALGVFATWASSRVLCAQQAFGGVRRLTDQMTVVDGGGSN |
| Ga0070674_1011629211 | 3300005356 | Miscanthus Rhizosphere | MAVPLNRRDLLKGALGVVATWASSGVLSAQQASGGVRRLTDQMVVVDGGGSNVLAF |
| Ga0070703_103396592 | 3300005406 | Corn, Switchgrass And Miscanthus Rhizosphere | MPVSLNRRDVLKAALGVLATWTSSRVLSAQQAFGGVRRLTDQMAVVD |
| Ga0070700_1008037461 | 3300005441 | Corn, Switchgrass And Miscanthus Rhizosphere | VLTVLNRRDVLKGALGAFASWTSARVLGAQPAAGGVRRLTDRMTVVDGGGSNVLAFFTGDGFV |
| Ga0070708_1009894302 | 3300005445 | Corn, Switchgrass And Miscanthus Rhizosphere | MSLNRRDVLKGAIAVFATWTSSRLNAQQAPGSVRRLTDQMDVVDGGGSNVLAFF |
| Ga0070698_1009156651 | 3300005471 | Corn, Switchgrass And Miscanthus Rhizosphere | MAVSLTRRDVLKGALGAFATWASSRVLSAQASGGVRRLTDQIALV |
| Ga0068853_1025033751 | 3300005539 | Corn Rhizosphere | MAVSLNRRDVLKGALGVFATWTSSRVLCAQQAFGGVRRLTDQMTVVDGGGSN |
| Ga0070672_1004442782 | 3300005543 | Miscanthus Rhizosphere | VRAVALNRREVLQGALGVFATWACSRVLSAQQPFRGGGRLNDQMTVVDGGGSNVLAFSTGDG |
| Ga0070665_1015680391 | 3300005548 | Switchgrass Rhizosphere | VTAVSLNRREVLKGALGVFVTWTSSRVLGAQQAFG |
| Ga0070664_1001390621 | 3300005564 | Corn Rhizosphere | VSLNRRDVLKGALGVIATWASSGILSAQQALGGVRRLTDQMAV |
| Ga0068859_1011015622 | 3300005617 | Switchgrass Rhizosphere | MAVSLNRRDVLKGALGAFATWTWTSSGVLSAQQAFGGVRRLTDQMMVV |
| Ga0068866_107463911 | 3300005718 | Miscanthus Rhizosphere | MLNRRDVLKGALGAFASWTSARVLSAQQTFGGVRRLTDRMTVVDGGGSNVLA |
| Ga0068861_1007314672 | 3300005719 | Switchgrass Rhizosphere | MTILNRRDVLKGALGAFASWTSARVLGAQPAAGGVRRLTDRMTVVD |
| Ga0068861_1013977402 | 3300005719 | Switchgrass Rhizosphere | MAVSLNRRNVLKGALGVFATWASSRVLCAQQAFGGVRRLTEQMAVVDGGGSNVLAFSTGE |
| Ga0068870_103199192 | 3300005840 | Miscanthus Rhizosphere | MTIMNRRDALKGALGAFASWTSARVLGAQQAFGGVRRLTDQMTVVDGGGSNVLAFFTGDG |
| Ga0081539_101944011 | 3300005985 | Tabebuia Heterophylla Rhizosphere | MTVVTRRDVLKGALGAFASCTSVRVLSAQQASARVRRLTDQMTVVDGGGSNVL |
| Ga0075417_104895101 | 3300006049 | Populus Rhizosphere | VNRRDVLKGALGVFTTWTSSRVLNAQQVSGVRRLTDKMAVVDGGGSNVLA |
| Ga0068871_1009013631 | 3300006358 | Miscanthus Rhizosphere | MAVSLNRRNVLKGALGVFATWASSGVLSAQQALGGVRRLTEQMAV |
| Ga0075428_1008985331 | 3300006844 | Populus Rhizosphere | MTVLNRRDVLKGALGAFVSWTSARVLSAQQAVGGV |
| Ga0079217_115037381 | 3300006876 | Agricultural Soil | MTVLNRRDVLKGALGAFASWTSARVLSAQPAVGGVRRLTDRMTVVDGGGSNVLAFSTG |
| Ga0079215_103058172 | 3300006894 | Agricultural Soil | MPASLNRRDVLKGALGVFATVAYARVLSAQQPVAGVRRLTDQMVVVDGGGSNVLAFS |
| Ga0079218_105914532 | 3300007004 | Agricultural Soil | VITVLTRRAVLKSALGALALSTPARAVGAQPASGGVRRLTDRMKIVDGGGSNVLAFSTGDGFV |
| Ga0079218_116272141 | 3300007004 | Agricultural Soil | VSLNRRDVLKGAVGACAAWMSAGVPGAQQASAGLRQGSVGQGGVRRLTDRMTVVDGGGSNVLAFAAG |
| Ga0105250_104650292 | 3300009092 | Switchgrass Rhizosphere | MALPLNRRDVLKGALGVFATWTSSRVLSAQQAFVGVRHLTDQMAVVDGGGSNVLAFA |
| Ga0105245_107406111 | 3300009098 | Miscanthus Rhizosphere | MTIMNRRDVLKGGLGAFASWTSARVLSAQQAFGAVRRLTDRMTVMDG |
| Ga0114129_115144282 | 3300009147 | Populus Rhizosphere | MAVSLNRRNVLKGALGVFATWASSRVLSAQQAVVGVRRLT |
| Ga0126305_105524291 | 3300010036 | Serpentine Soil | MAVSLNRRDVLMGALGAVALWTRARVLSAQQALGGVRRLTDRMTVV |
| Ga0150983_140448131 | 3300011120 | Forest Soil | MTILNRRDVLKGAVGAFAWWTSARVLSAQQAFGGVRRLTGQVTVVDGGGSNVLAFFTGDG |
| Ga0137436_10862411 | 3300011423 | Soil | MAVSLNRRDVLKGALGVFATWAASGVLSAQQASGGGRRLTDQ |
| Ga0137448_11858102 | 3300011427 | Soil | MDRRAVLKGAVGVFATWASSRVLGAQQALGGVRRLTDQMVV |
| Ga0157353_10271302 | 3300012496 | Unplanted Soil | MAVSLNRRDVLKGALGVLATWTSSRVLSAQQASGGVRLTDQMAVVDG |
| Ga0157332_10133122 | 3300012511 | Soil | MAVSLNRRDVLKGALGVFATWTSARALSAQQPSGGVRRLTDQM |
| Ga0157284_101371011 | 3300012893 | Soil | MAVSLNRREVLKSALGVFATWASSGVLSAQQPSGGVRRLTDQIAVVDR |
| Ga0157285_102611982 | 3300012897 | Soil | MAVSLNRRDVLKGALGVFATWTTSRVLCAQQAFGGVGRLTDQM |
| Ga0157291_100588642 | 3300012902 | Soil | MAVPLNRREVLKGALGLFATWASSRVLSAQQAFGGVHRLTDQMAVVDGGG |
| Ga0157286_104630981 | 3300012908 | Soil | LKGALGVFATWASSGVLSAQQASGGVRRLTDKMSVVDGGGSNVLAFSTGE |
| Ga0157302_100999862 | 3300012915 | Soil | MAMPLNRRDVLKGALGVFAAWTSSRVLGAQQAFRGGRRLTD |
| Ga0137404_113717002 | 3300012929 | Vadose Zone Soil | VNRRDVLKGAIGVFTMWTSSRVLNAQQASGGVRRLMDKLSVIEGGG |
| Ga0164301_116181272 | 3300012960 | Soil | MNRRDGLKGALGAFASWTSARVLSAQQAVGGVRRLTDQMTVVDGG |
| Ga0163162_124022951 | 3300013306 | Switchgrass Rhizosphere | MSALWTSSRVLDAQQASGGVRRLTDKMALVDGGGSNVLACSSGE |
| Ga0157375_130153951 | 3300013308 | Miscanthus Rhizosphere | VTAVSLNRREVLKGALGVFVTWTSSRVLGAQQAFGGGRRLTDQMVVVDGGGCNVLAFFTG |
| Ga0182000_103078411 | 3300014487 | Soil | MTVLTRRAVLKGALGAFASWTSARVASGAQQASGAVRRLT |
| Ga0173478_106595551 | 3300015201 | Soil | MAVSLNRRDVLKGALGVFATWTSSRVLSAQQAVGGVRRLTDRIALVDGGGSNVL |
| Ga0132257_1017675522 | 3300015373 | Arabidopsis Rhizosphere | MAVPLNRREVLKGALGLFATWASSRVLSAQQAFGGVHRLTDQMAVVDGGGSNVLAFFTGE |
| Ga0132255_1004760492 | 3300015374 | Arabidopsis Rhizosphere | VALNRREVLQGALGVFATWACSRVLSAQQPFRGGGRLNDQMTVVDGGGSNVLAFSTG* |
| Ga0182033_105288001 | 3300016319 | Soil | VNRRDVFKGAVGVFTMWTASRVLSAQQASGGVRRLTDKVAVVDGGGANMVAFFNGDAII |
| Ga0182034_110674522 | 3300016371 | Soil | VNRRDVLKGAAGVFTMWTSSQVLNAQQASTGVRRLTDKIAVV |
| Ga0163161_113056182 | 3300017792 | Switchgrass Rhizosphere | VSLNRRDVLKGALGVLATWTSSRVLSAQQASGGVRLTDQMAVVDGAGSNILAFF |
| Ga0184621_100311171 | 3300018054 | Groundwater Sediment | MAVSLNRRDVLKGALGVFAMWTSSPVLNAQQALGISRRLTDQMTVVDGGGSN |
| Ga0184619_100268591 | 3300018061 | Groundwater Sediment | MNRRDVLTGALGAFASWTSARVLSAQQAFGGVRRLTDQMTVVDGGGSNVLAFFTGD |
| Ga0184624_100998301 | 3300018073 | Groundwater Sediment | MAVPLNRRDVLRGALGVFATWASSGVLSAQQPSGGVRRLTDQIAVVDGGGSNVLA |
| Ga0190273_111161331 | 3300018920 | Soil | MTVLTRRDVLKGALGAFAAWTPARVLSARQASGAVRRLTDQMTIV |
| Ga0184646_15757651 | 3300019259 | Groundwater Sediment | VNRRDVLKGALGVFTMWTSSRVVNAQQASGGVRRLTDKMAVVDG |
| Ga0210381_101056672 | 3300021078 | Groundwater Sediment | MTIMNRRDVLKGALGAFASWTSARVLSAQQAFGGVRRLTDQMTVVDGGGSN |
| Ga0213880_101694241 | 3300021953 | Exposed Rock | VNRRDVLKGGLGVFTIWTSSRVLHAQQTAADIRRLTDKIAVL |
| Ga0247743_10064092 | 3300023067 | Soil | MAVSLNRRDVLKGALGVFAAWASSRVLGAQLASVGVRRLTD |
| Ga0247789_11231862 | 3300023266 | Soil | MAGPLNRRDVLKGALGAFAVWTSSGVLSAQQASGGVRRLTDTIAVVDGGGSNVLAF |
| Ga0247784_11978811 | 3300023270 | Plant Litter | MAVSLNRREVLKSALGVFATWASSGVLSAQQPSGGVRRLTDQI |
| Ga0207688_100276101 | 3300025901 | Corn, Switchgrass And Miscanthus Rhizosphere | VSLNRRDVLKGALGVLATWTSSRVLSAQQASGGVRLTDQMAVVDGAGSNILSFFA |
| Ga0207680_111498611 | 3300025903 | Switchgrass Rhizosphere | MAVSLNRRDVLKGALGVFATWTSSRVLSAQQAFGGVRR |
| Ga0207660_103303622 | 3300025917 | Corn Rhizosphere | VSLNRRDVLKGALGVFATWTSSRVLSAQQASGGVRLTDQMAVVDGAGSNILAFFAG |
| Ga0207687_103270692 | 3300025927 | Miscanthus Rhizosphere | MTIMNRRDVLKGGLGAFASWTSARVLSAQQAFGAVRRLTDR |
| Ga0207669_112773712 | 3300025937 | Miscanthus Rhizosphere | MAVSLNRRDVLKGALGVFATWTSSGVLCAQQPSGGVRRLTDQMTVVDGG |
| Ga0207689_117486232 | 3300025942 | Miscanthus Rhizosphere | MAVPLTRRDVLKGALGVFATWASSGVFSAQQASGGIRRLTD |
| Ga0207703_110842211 | 3300026035 | Switchgrass Rhizosphere | MAVSLNRRNVLKGALGVFATWASSGVLSAQQALGGVR |
| Ga0208185_10133693 | 3300027533 | Soil | MAVSLNRREVLKGALGVFATWTSSRVLSAQQAVGGVRRLTDRIALVD |
| Ga0208185_11560831 | 3300027533 | Soil | MALRLNRRDVVKGALGVFATWASSRVLSAQQASGGVRRLTDQMVVVDG |
| Ga0209983_10226622 | 3300027665 | Arabidopsis Thaliana Rhizosphere | MAVSLNRRDVLKGALGVFATWTTSRVLCAQQAFGGVGRLTDQ |
| Ga0209811_102136152 | 3300027821 | Surface Soil | MTILNRRDVLKGALGAFASWTSARVLSAQQAFGGVRRLTDQMTVVDGGGA |
| Ga0209583_101257441 | 3300027910 | Watersheds | MAVSLNRRDVLKGALGVLATWTCSRVLGAQQAFGGVRRLTDQIT |
| Ga0268265_112600272 | 3300028380 | Switchgrass Rhizosphere | MAVSLNRRNVLKGALGVFATWASSRVLCAQQAFGGVRRLTDQMTVVDGGGSNVLAF |
| Ga0247818_113250302 | 3300028589 | Soil | MAVPLNRREVLRGALGVLATWTSSRVLSAQPAVTGVRRLTDRMVVVDG |
| Ga0307296_105742851 | 3300028819 | Soil | MTILNRRDVLKGALGAFASWTSARVLSAQQAFGGVRRLTDQMTVVDGG |
| Ga0307312_104065321 | 3300028828 | Soil | MAMSMNRRDVLKGALGVCATWTSSRVLNAQQAFGSVRRLTDQMT |
| Ga0308189_100140381 | 3300031058 | Soil | MTIINRRDVLKGALGAYASWTSARVLSAQQAAGSVRRLTERMTVMDGG |
| Ga0310888_108567211 | 3300031538 | Soil | VLTVLNRRDVLKGALGAFASWTSARVLGAQPAAGGVRRLTDRMTVVDGGGSNVL |
| Ga0307468_1023983021 | 3300031740 | Hardwood Forest Soil | MAVSLHRRDLLKGALGVLATWASSRVLSAQQAVAGVRRLTGEIAVVDGG |
| Ga0310907_104589981 | 3300031847 | Soil | MAGSLNRRDVLKGALGVCATWASSRVLSGQPAFGGRRLTDQMAVVDGGGCNVLAFFTGD |
| Ga0310904_104652322 | 3300031854 | Soil | MAVRLNRREVLKGALGLFATWASSRVLSAQQAFGGVHRLTD |
| Ga0307406_101351071 | 3300031901 | Rhizosphere | MAVSLSRREVLTGALGVFATWTSSRVLGAQQAAGGGSRLTDRIALVD |
| Ga0310900_100522393 | 3300031908 | Soil | MAVSLNRRNVLKGALGVFATWASSRVLCAQQAFGGVRRLTDQMTVVDGGGSNVLAFFTGEGVL |
| Ga0307412_115297321 | 3300031911 | Rhizosphere | MTVLNRRAVLKGALGAFASWTSTRVLSAQQASGGVRRLTDRMTV |
| Ga0310884_106964472 | 3300031944 | Soil | MAVSLNRRDVLKGALGVFATWASPRVLSAQQAVGGVRRLTDRIALVDGGGSNVLAFFTGE |
| Ga0310884_107319021 | 3300031944 | Soil | MAVSLNRRNVLKGALGVFATWASSGVLSAQQALGGVRRLTEQMAVVDGG |
| Ga0307416_1020122122 | 3300032002 | Rhizosphere | MTVLNRRAVLKGALGAFASWTSTRVLSAQQASGGVRRLTDRMTVVDGGG |
| Ga0307414_102147572 | 3300032004 | Rhizosphere | MTVLNRRAVLKGALGAFASWTSTRVLSAQQASGGVRRLTDRMTVVDGGGSNVVA |
| Ga0315912_108832472 | 3300032157 | Soil | MMAVAMRRRDVLKGALGVFATWASSPALSAQPASGGVRRLTDQM |
| Ga0310812_103523581 | 3300032421 | Soil | MAVSLNRRDVLKGALGVFATWASSRVVSAQQNRMVVVDGGGSNVMAVSTGDG |
| Ga0310810_101715333 | 3300033412 | Soil | VSLNRRDVLKGALGVIATWASSGVLSAQQALGGVRRLTDQMAVLDGGGSNVLAFS |
| Ga0247829_108815591 | 3300033550 | Soil | MAVSLNRRDVLKGALGVFATWTSSRVLSAQQAFGGVRRLT |
| Ga0370548_039047_1_132 | 3300034644 | Soil | MNRRNVLKGALGVFTMWTSSRVLNAQQASGGVRRLTDKMAVVDG |
| Ga0314794_142148_437_550 | 3300034669 | Soil | MSLNRRDVLKGALGAFVWWTSARVLSAQQAADGVRRLT |
| Ga0314803_116155_3_170 | 3300034678 | Soil | MAVSLHRRDVLKGALGLFATWASSRVLGAQQAFRGGRRLGDQMAVVDGGGSNVLAF |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |