Metagenome / Metatranscriptome Family F103270

Overview

Basic Information

• Family ID: F103270
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 101
• Average Sequence Length: 38 residues
• Representative Sequence: MTEKIKPIFNSFQEYIEAENMIFQTLHERVTQGTNNKE
• Number of Associated Samples: 76
• Number of Associated Scaffolds: 101

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Unclassified
• % of genes with valid RBS motifs: 0.00 %
• % of genes near scaffold ends (potentially truncated): 12.87 %
• % of genes from short scaffolds (< 2000 bps): 70.30 %
• Associated GOLD sequencing projects: 64
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.50

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Unclassified (52.475 % of family members)
• NCBI Taxonomy ID: N/A
• Taxonomy: N/A

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine (43.564 % of family members)
• Environment Ontology (ENVO): Unclassified (71.287 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline) (88.119 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 51.52%
  β-sheet: 0.00%
  Coil/Unstructured: 48.48%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF02796	HTH_7	15.84
PF04404	ERF	9.90
PF04542	Sigma70_r2	7.92
PF08279	HTH_11	6.93
PF14743	DNA_ligase_OB_2	6.93
PF00722	Glyco_hydro_16	0.99
PF01068	DNA_ligase_A_M	0.99
PF03819	MazG	0.99
PF12684	DUF3799	0.99
PF00303	Thymidylat_synt	0.99

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	7.92
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	7.92
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	7.92
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	7.92
COG0207	Thymidylate synthase	Nucleotide transport and metabolism [F]	0.99
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	0.99
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	0.99
COG2273	Beta-glucanase, GH16 family	Carbohydrate transport and metabolism [G]	0.99

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.48 %
All Organisms	root	All Organisms	47.52 %

Level 2

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.48 %
Viruses	superkingdom	All Organisms → Viruses	28.71 %
cellular organisms	root	All Organisms → cellular organisms	18.81 %

Level 3

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.48 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	19.80 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	18.81 %

Level 4

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.48 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	19.80 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	18.81 %

Level 5

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.48 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	19.80 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	16.83 %
unclassified Proteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria	0.99 %

Level 6

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.48 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	19.80 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	13.86 %
Enterobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales	1.98 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.99 %

Level 7

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.48 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	19.80 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	13.86 %
Enterobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae	1.98 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.99 %

Level 8

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.48 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	19.80 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	13.86 %
Escherichia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia	1.98 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.99 %

Level 9

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.48 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	19.80 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	13.86 %
Escherichia coli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia → Escherichia coli	1.98 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.99 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300000115|DelMOSum2011_c10027114	All Organisms → Viruses → Predicted Viral	2598
3300000116|DelMOSpr2010_c10031996	All Organisms → Viruses → Predicted Viral	2448
3300001349|JGI20160J14292_10023490	Not Available	3392
3300001450|JGI24006J15134_10027276	All Organisms → Viruses → Predicted Viral	2547
3300001450|JGI24006J15134_10030332	All Organisms → Viruses → Predicted Viral	2378
3300001450|JGI24006J15134_10030823	All Organisms → Viruses → Predicted Viral	2354
3300001450|JGI24006J15134_10030980	Not Available	2347
3300001450|JGI24006J15134_10047866	All Organisms → Viruses → Predicted Viral	1768
3300001460|JGI24003J15210_10022078	All Organisms → Viruses → Predicted Viral	2409
3300001460|JGI24003J15210_10022980	Not Available	2351
3300001460|JGI24003J15210_10042691	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1561
3300001460|JGI24003J15210_10161843	Not Available	561
3300001472|JGI24004J15324_10069215	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	988
3300001589|JGI24005J15628_10175379	Not Available	624
3300001718|JGI24523J20078_1017914	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	890
3300001941|GOS2219_1002120	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1888
3300001947|GOS2218_1029840	All Organisms → cellular organisms → Bacteria → Proteobacteria	1483
3300005941|Ga0070743_10283793	Not Available	535
3300006468|Ga0082251_10062719	All Organisms → Viruses → Predicted Viral	1404
3300006735|Ga0098038_1013794	All Organisms → Viruses → Predicted Viral	3125
3300006735|Ga0098038_1119184	Not Available	898
3300006750|Ga0098058_1049435	Not Available	1189
3300006752|Ga0098048_1093220	Not Available	914
3300006921|Ga0098060_1047943	Not Available	1268
3300006922|Ga0098045_1027290	Not Available	1488
3300006929|Ga0098036_1217183	Not Available	580
3300007543|Ga0102853_1076518	Not Available	609
3300007647|Ga0102855_1064267	Not Available	990
3300007647|Ga0102855_1072407	Not Available	928
3300007692|Ga0102823_1138457	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	646
3300007862|Ga0105737_1015613	Not Available	1724
3300007954|Ga0105739_1168813	Not Available	524
3300008999|Ga0102816_1142115	Not Available	742
3300009026|Ga0102829_1167192	Not Available	707
3300009026|Ga0102829_1253638	Not Available	579
3300009056|Ga0102860_1083218	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	881
3300009086|Ga0102812_10151615	Not Available	1268
3300009507|Ga0115572_10073105	All Organisms → Viruses → Predicted Viral	2106
3300009543|Ga0115099_10988746	Not Available	548
3300009593|Ga0115011_10225202	Not Available	1396
3300010149|Ga0098049_1147281	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	728
3300010150|Ga0098056_1129070	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	857
3300010392|Ga0118731_103653840	Not Available	1380
3300010430|Ga0118733_107978596	Not Available	548
3300017708|Ga0181369_1027443	All Organisms → Viruses → Predicted Viral	1356
3300017713|Ga0181391_1118637	Not Available	593
3300017714|Ga0181412_1006893	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia → Escherichia coli	3625
3300017714|Ga0181412_1040093	Not Available	1223
3300017727|Ga0181401_1013856	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia → Escherichia coli	2491
3300017756|Ga0181382_1162916	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	576
3300017758|Ga0181409_1052489	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1254
3300017758|Ga0181409_1052766	Not Available	1250
3300017782|Ga0181380_1187402	Not Available	697
3300020347|Ga0211504_1015151	Not Available	2177
3300020438|Ga0211576_10176516	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1146
3300021957|Ga0222717_10038097	Not Available	3155
3300021957|Ga0222717_10052564	All Organisms → Viruses	2637
(restricted) 3300022920|Ga0233426_10044870	All Organisms → Viruses → Predicted Viral	2149
(restricted) 3300022920|Ga0233426_10088722	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1385
(restricted) 3300024062|Ga0255039_10376394	Not Available	612
3300024228|Ga0228633_1041331	All Organisms → Viruses → Predicted Viral	1191
3300024228|Ga0228633_1142188	Not Available	536
3300024297|Ga0228658_1044044	Not Available	1141
3300024332|Ga0228659_1023648	All Organisms → Viruses	1427
3300024343|Ga0244777_10397240	Not Available	859
3300024346|Ga0244775_10056697	All Organisms → Viruses	3395
3300024346|Ga0244775_11216290	Not Available	586
3300024348|Ga0244776_10404910	Not Available	904
3300025026|Ga0207879_102251	All Organisms → Viruses → Predicted Viral	1197
3300025048|Ga0207905_1014475	Not Available	1343
3300025048|Ga0207905_1069415	Not Available	516
3300025070|Ga0208667_1040727	Not Available	785
3300025071|Ga0207896_1003388	Not Available	2995
3300025071|Ga0207896_1004401	Not Available	2601
3300025071|Ga0207896_1007511	Not Available	1970
3300025071|Ga0207896_1008291	Not Available	1874
3300025072|Ga0208920_1017331	All Organisms → Viruses → Predicted Viral	1572
3300025084|Ga0208298_1055490	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	767
3300025086|Ga0208157_1007105	Not Available	3911
3300025098|Ga0208434_1031238	All Organisms → Viruses	1251
3300025099|Ga0208669_1001596	All Organisms → Viruses	8208
3300025120|Ga0209535_1015136	All Organisms → Viruses → Predicted Viral	4116
3300025120|Ga0209535_1030650	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2547
3300025128|Ga0208919_1089608	Not Available	1000
3300025137|Ga0209336_10096075	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	844
3300025138|Ga0209634_1030796	All Organisms → Viruses → Predicted Viral	2843
3300025141|Ga0209756_1314681	Not Available	546
3300025626|Ga0209716_1001049	Not Available	22311
3300025626|Ga0209716_1040980	Not Available	1609
3300025849|Ga0209603_1062564	Not Available	1861
3300027204|Ga0208924_116805	Not Available	591
3300027506|Ga0208973_1001853	All Organisms → Viruses	8959
3300027788|Ga0209711_10174128	All Organisms → Viruses → Predicted Viral	1013
(restricted) 3300027861|Ga0233415_10008720	All Organisms → Viruses → Predicted Viral	4011
(restricted) 3300027861|Ga0233415_10019707	All Organisms → Viruses	2679
(restricted) 3300027861|Ga0233415_10023842	All Organisms → Viruses	2449
(restricted) 3300027861|Ga0233415_10040013	All Organisms → Viruses → Predicted Viral	1928
3300027906|Ga0209404_10126495	All Organisms → Viruses	1535
3300028125|Ga0256368_1042437	Not Available	808
3300028194|Ga0257106_1230579	Not Available	626
3300031774|Ga0315331_10516166	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	864

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Category

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	100.00%

Type

Habitat	Taxonomy	Distribution
Oceanic	Environmental → Aquatic → Marine → Oceanic	45.54%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	15.84%
Coastal	Environmental → Aquatic → Marine → Coastal	8.91%
Strait	Environmental → Aquatic → Marine → Strait	8.91%
Unclassified	Environmental → Aquatic → Marine → Unclassified	7.92%
Inlet	Environmental → Aquatic → Marine → Inlet	5.94%
Pelagic	Environmental → Aquatic → Marine → Pelagic	3.96%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	2.97%

Subtype

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	44.55%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	11.88%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	8.91%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	7.92%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	6.93%
Unclassified	Environmental → Aquatic → Marine → Inlet → Unclassified	5.94%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	3.96%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	3.96%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	2.97%
Sediment	Environmental → Aquatic → Marine → Coastal → Sediment	1.98%
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment	0.99%

Habitat

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	43.56%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	11.88%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	8.91%
Seawater	Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater	5.94%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	3.96%
Pelagic Marine	Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine	3.96%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	2.97%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	2.97%
Estuarine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine	2.97%
Estuary Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water	1.98%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	1.98%
Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine	1.98%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	0.99%
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment → Sediment	0.99%
Marine	Environmental → Aquatic → Marine → Coastal → Sediment → Marine	0.99%
Marine Sediment	Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment	0.99%
Sea-Ice Brine	Environmental → Aquatic → Marine → Coastal → Unclassified → Sea-Ice Brine	0.99%
Seawater	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater	0.99%
Pelagic Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine	0.99%

Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OID	Sample Name	Habitat Type
3300000115	Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011	Environmental
3300000116	Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010	Environmental
3300001349	Pelagic Microbial community sample from North Sea - COGITO 998_met_10	Environmental
3300001450	Marine viral communities from the Pacific Ocean - LP-53	Environmental
3300001460	Marine viral communities from the Pacific Ocean - LP-28	Environmental
3300001472	Marine viral communities from the Pacific Ocean - LP-32	Environmental
3300001589	Marine viral communities from the Pacific Ocean - LP-40	Environmental
3300001718	Marine viral communities from the Pacific Ocean - LP-48	Environmental
3300001941	Marine microbial communities from Browns Bank, Gulf of Maine - GS003	Environmental
3300001947	Marine microbial communities from the Gulf of Maine, Canada - GS002	Environmental
3300005941	Estuarine microbial communities from the Columbia River estuary, USA - metaG S.697	Environmental
3300006468	Deep-sea sediment bacterial and archaeal communities from Fram Strait - Combined Assembly of Gp0119454, Gp0119453, Gp0119452, Gp0119451	Environmental
3300006735	Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG	Environmental
3300006750	Marine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaG	Environmental
3300006752	Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG	Environmental
3300006921	Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG	Environmental
3300006922	Marine viral communities from the Subarctic Pacific Ocean - 11_ETSP_OMZ_AT15265 metaG	Environmental
3300006929	Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG	Environmental
3300007543	Estuarine microbial communities from the Columbia River estuary - metaG 1370B-3	Environmental
3300007647	Estuarine microbial communities from the Columbia River estuary - metaG 1370B-02	Environmental
3300007692	Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.743	Environmental
3300007862	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1373A_0.2um	Environmental
3300007954	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1373B_0.2um	Environmental
3300008999	Estuarine microbial communities from the Columbia River estuary - Flood tide non-ETM metaG S.545	Environmental
3300009026	Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.575	Environmental
3300009056	Estuarine microbial communities from the Columbia River estuary - metaG 1449A-3	Environmental
3300009086	Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.713	Environmental
3300009507	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120607	Environmental
3300009543	Marine eukaryotic communities from Pacific Ocean to study complex ecological interactions - MBTS_20Mar14_M2_3um Metatranscriptome (Metagenome Metatranscriptome)	Environmental
3300009593	Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome	Environmental
3300010149	Marine viral communities from the Subarctic Pacific Ocean - 13B_ETSP_OMZ_AT15268_CsCl metaG	Environmental
3300010150	Marine viral communities from the Subarctic Pacific Ocean - 17B_ETSP_OMZ_AT15314_CsCl metaG	Environmental
3300010392	Coastal sediment microbial communities from Rhode Island, USA. Combined Assembly of Gp0121717, Gp0123912, Gp0123935, Gp0139423, Gp0139424, Gp0139388, Gp0139387, Gp0139386, Gp0139385	Environmental
3300010430	Marine sediment microbial communities from Gulf of Thailand under amendment with organic carbon and nitrate - JGI co-assembly of 8 samples	Environmental
3300017708	Marine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaG	Environmental
3300017713	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 14 SPOT_SRF_2010-08-11	Environmental
3300017714	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 35 SPOT_SRF_2012-08-15	Environmental
3300017727	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 24 SPOT_SRF_2011-07-20	Environmental
3300017756	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 5 SPOT_SRF_2009-10-22	Environmental
3300017758	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 32 SPOT_SRF_2012-05-30	Environmental
3300017782	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 3 SPOT_SRF_2009-08-19	Environmental
3300020347	Marine microbial communities from Tara Oceans - TARA_B100000497 (ERX556109-ERR598994)	Environmental
3300020438	Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)	Environmental
3300021957	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D	Environmental
3300022920 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_118_April2016_10_MG	Environmental
3300024062 (restricted)	Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_1	Environmental
3300024228	Seawater microbial communities from Monterey Bay, California, United States - 41D	Environmental
3300024297	Seawater microbial communities from Monterey Bay, California, United States - 71D	Environmental
3300024332	Seawater microbial communities from Monterey Bay, California, United States - 73D	Environmental
3300024343	Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction	Environmental
3300024346	Whole water sample coassembly	Environmental
3300024348	0.2um to 3um size fraction coassembly	Environmental
3300025026	Marine viral communities from the Pacific Ocean - LP-24 (SPAdes)	Environmental
3300025048	Marine viral communities from the Subarctic Pacific Ocean - LP-49 (SPAdes)	Environmental
3300025070	Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)	Environmental
3300025071	Marine viral communities from the Pacific Ocean - LP-36 (SPAdes)	Environmental
3300025072	Marine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaG (SPAdes)	Environmental
3300025084	Marine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaG (SPAdes)	Environmental
3300025086	Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG (SPAdes)	Environmental
3300025098	Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG (SPAdes)	Environmental
3300025099	Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG (SPAdes)	Environmental
3300025120	Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)	Environmental
3300025128	Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (SPAdes)	Environmental
3300025137	Marine viral communities from the Pacific Ocean - LP-32 (SPAdes)	Environmental
3300025138	Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)	Environmental
3300025141	Marine viral communities from the Pacific Ocean - ETNP_6_85 (SPAdes)	Environmental
3300025626	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531 (SPAdes)	Environmental
3300025849	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120607 (SPAdes)	Environmental
3300027204	Estuarine microbial communities from the Columbia River estuary - metaG 1370B-3 (SPAdes)	Environmental
3300027506	Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_66_BLW_10 (SPAdes)	Environmental
3300027788	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_88 (SPAdes)	Environmental
3300027861 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_12_MG	Environmental
3300027906	Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome (SPAdes)	Environmental
3300028125	Sea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - SB	Environmental
3300028194	Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_10m	Environmental
3300031774	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 60m 34915	Environmental

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
DelMOSum2011_100271144	3300000115	Marine	MTDKLKPIFNSFQEYIESENMIFTTLHENMTIANKDKE*
DelMOSpr2010_100319965	3300000116	Marine	MTKKLEPIFNSFQEYIEAENMIFETLEDRVTHGTKVIK*
JGI20160J14292_100234907	3300001349	Pelagic Marine	MTKKLKPIFDSFQEYIQAEDMIFETLHASMTIADKDK*
JGI24006J15134_100272764	3300001450	Marine	MTKKLEPIFNSFQEYIEAENMIFETLEARVTHGNKDIK*
JGI24006J15134_100303326	3300001450	Marine	MTEKIKPIFNSFQEYIEAENMIFETLQDRVTNGTKDIK*
JGI24006J15134_100308236	3300001450	Marine	MTEKIKPIFNSFQEYIEAENMIFQTLHERVTQGINNKE*
JGI24006J15134_100309804	3300001450	Marine	MTEKIKPIFDSFQEYIQAEDMIFQTLHERVTNSTKDIE*
JGI24006J15134_100478664	3300001450	Marine	MTRKLEPIFNSFQEYIEAENMIFETLEDRVTHSTKVIK*
JGI24003J15210_100220784	3300001460	Marine	MTEKIKPIFDSFQEYIQAEDMIFQTLHERVTHSTKDXX*
JGI24003J15210_100229804	3300001460	Marine	MTDKIKPIFNSFQEYIQAEDMVFQTLHERVTHSTKDKE*
JGI24003J15210_100426913	3300001460	Marine	MTEKIKPIFDSFQEYIQAENMIFQTLHERVTQGTNNKE*
JGI24003J15210_101618432	3300001460	Marine	MTKKLEPIFNSFQEYIEAENMIFETLEDRVTHSTKVIK*
JGI24004J15324_100692152	3300001472	Marine	MTRKLEPIFNSFQEYIEAENMIFETLEDRVTHSTKVVK*
JGI24005J15628_101753793	3300001589	Marine	MTDKLKPIYDSFQEYIEAENMIFTTLHESVTTASKDK*
JGI24523J20078_10179143	3300001718	Marine	MTKKLEPIFNSFQEXIEAENMIFETLEXRVTHGNKDIK*
GOS2219_10021202	3300001941	Marine	MTEKIKPIFDSFQEYIQAEDMIFQTLHDRVTHSTKDKE*
GOS2218_10298403	3300001947	Marine	MKKKLEPIFNSFQEYIEAEDMIFKTLEARVTHSIKDIE*
Ga0070743_102837932	3300005941	Estuarine	MTEKIKPIFNSFQEYIEAENMVFQTLHARVTQGTNNKE*
Ga0082251_100627192	3300006468	Sediment	MKQKLKPIFDSFQEYIEAENMIFETLEDRVTHGTKVIK*
Ga0098038_10137946	3300006735	Marine	MTEKIKPIFNSFQEYIQAEDMIFQTLHDRVTHSTKDKE*
Ga0098038_11191844	3300006735	Marine	MTEKIKPIFNSFQEYIEAEDMVFKTLHARVTQGTNNKE*
Ga0098058_10494355	3300006750	Marine	MTEKIKPIFNSFQEYIESEDMVFQTLHARVTQGTNNKE*
Ga0098048_10932203	3300006752	Marine	MTEKIKPIFNSFKEYIQAEDMIFKTLQDRVTHSTKDKE*
Ga0098060_10479433	3300006921	Marine	MTEKIKPIFDSFQEYIQAEDMIFQTLHERVTQGTNNKE*
Ga0098045_10272904	3300006922	Marine	MTEKIKPIFDSFQEYIKAEDMIFQTLHERVTHSTKDKE*
Ga0098036_12171831	3300006929	Marine	MTEKIKPIFNSFQEYIESEDMVFQTLHAGVTQGTNNKE*
Ga0102853_10765181	3300007543	Estuarine	MTAKLKPIFDSFQEYIKAEDMIFTTLHENMTIASKDKE*
Ga0102855_10642674	3300007647	Estuarine	MTEKIKPIFDSFQEYIQAEDMIFQALHERVTHSTKDKE*
Ga0102855_10724073	3300007647	Estuarine	MTEKIKPIFNSFQEYIEAENMVFKTLHARVTQGTNNKE*
Ga0102823_11384572	3300007692	Estuarine	MTEKIKPIFNSFQEYIEAENMIFQTLHERVTQGTNNKE*
Ga0105737_10156136	3300007862	Estuary Water	MTKKLEPIFNSFQEYIEAENMIFETLEARVTHGIKGIE*
Ga0105739_11688133	3300007954	Estuary Water	MTAKLKPIFDSFQEYIKAEDMIFTSLHENMTIASKDKE*
Ga0102816_11421152	3300008999	Estuarine	MTEKIKPIFNSFQEYIQAEDMIFQTLHERVTHSTKDKE*
Ga0102829_11671922	3300009026	Estuarine	MTEKIKPIFDSFQEYIQAEDMIFQTLHERVTHSTKDKE*
Ga0102829_12536381	3300009026	Estuarine	MTEKIKPIFNSFQEYIESENMIFTTLHENMTIANKDKE*
Ga0102860_10832183	3300009056	Estuarine	MTEKIKPIFDSFQEYIEAENMVFKTLHARVTQGTNNKE*
Ga0102812_101516151	3300009086	Estuarine	FKTPMTEKIKPIFNSFQEYIEAENMVFQTLHARVTQGTNNKE*
Ga0115572_100731054	3300009507	Pelagic Marine	MTKKLEPIFNSFQEYIEAENMIFETLEPRVTHGNKDIK*
Ga0115099_109887463	3300009543	Marine	MTEKIKPIFNSFQEYIETENMIFQTLHERVTQGTNNKE*
Ga0115011_102252022	3300009593	Marine	MTDKIKPIFDSFQEYIEAEDMIFETLHERVTQACSTKE*
Ga0098049_11472811	3300010149	Marine	EKIKPIFNSFQEYIESEDMVFQTLHARVTQGTNNKE*
Ga0098056_11290703	3300010150	Marine	PMTEKIKPIFNSFQEYIQAEDMIFQTLHERVTQGTNNKE*
Ga0118731_1036538403	3300010392	Marine	MTEKIKPIFNSFQEYIEAEDMIFETLQDRVTNGTKDIK*
Ga0118733_1079785963	3300010430	Marine Sediment	MTKKLEPIFNSFQEYIEAEDMIFETLQDRVTNGTK
Ga0181369_10274431	3300017708	Marine	FKKFMTEKIKPIFNSFQEYIQAEDMIFQTLHDRVTHSTKDKE
Ga0181391_11186372	3300017713	Seawater	MTEKIKPIFNSFQEYIQAENMIFQTLHERVTQGTNNKE
Ga0181412_10068934	3300017714	Seawater	MTEKIKPIFNSFQEYIESENMIFTTLHENMTLASKDKE
Ga0181412_10400932	3300017714	Seawater	MTEKIKPIFDSFQEYIKAEDMIFTTLHENMTIASKDKE
Ga0181401_10138565	3300017727	Seawater	MTAKIQPIFNSFQEYIEAEDMIFKTLHEGVTQGTNNKE
Ga0181382_11629161	3300017756	Seawater	EKIKPIFNSFQEYIEAENMIFQTLHERVTQGTNNKE
Ga0181409_10524893	3300017758	Seawater	EKIKPIFDSFQEYIQAENMIFQTLHERVTQGTNNKE
Ga0181409_10527664	3300017758	Seawater	MTEKIKPIFNSFQEYIETENMIFQTLHERVTKGTNNKE
Ga0181380_11874022	3300017782	Seawater	MTEKIKPIFDSFQEYIQAEDMIFKTLHDRVTHSTKDKE
Ga0211504_10151513	3300020347	Marine	MTEKIKPIFDSFQEYIKAEDMIFTTLHENMTTASKDKE
Ga0211576_101765163	3300020438	Marine	MTEKIKPIFNSFQEYIETENMIFQTLHERVTQGTNNKE
Ga0222717_100380974	3300021957	Estuarine Water	MTEKIKPIFNSFQEYIQAEDMIFQTLHERVTHSTKDKE
Ga0222717_100525643	3300021957	Estuarine Water	MTEKIKPIFDSFQEYIQAENMIFQTLHERVTQGTNNKE
(restricted) Ga0233426_100448704	3300022920	Seawater	MTEKIKPIFNSFQEYIEAENMVFKTLHARVTQGTNNKE
(restricted) Ga0233426_100887224	3300022920	Seawater	MTEKIKPIFNSFQEYIETENMIFQTLHERVTRGTNNKE
(restricted) Ga0255039_103763942	3300024062	Seawater	MKKKLEPIFNSFQEYIEAEDMIFKTLEARVTHSIKDIE
Ga0228633_10413312	3300024228	Seawater	MTEKIKPIFNSFKEYIQAEDMIFKTLQDTVTHSTKDKE
Ga0228633_11421882	3300024228	Seawater	MTEKIKPIFDSFQEYIKAEDMIFQTLHDRVTHSTKDKE
Ga0228658_10440444	3300024297	Seawater	MTEKIKPIFNSFKEYIQAEDMIFKTLQDTVTHNTKDKE
Ga0228659_10236483	3300024332	Seawater	KKLMTEKIKPIFNSFKEYIQAEDMIFKTLQDTVTHSTKDKE
Ga0244777_103972402	3300024343	Estuarine	MTEKIKPIFDSFQEYIQAEDMIFQTLHERVTHSTKDKE
Ga0244775_100566973	3300024346	Estuarine	MTEKIKPIFNSFQEYIEAENMVFQTLHARVTQGTNNKE
Ga0244775_112162902	3300024346	Estuarine	MTEKIKPIFNSFQEYIESENMIFTTLHENMTIANKDKE
Ga0244776_104049103	3300024348	Estuarine	TPMTEKIKPIFNSFQEYIEAENMVFKTLHARVTQGTNNKE
Ga0207879_1022514	3300025026	Marine	MTKKLEPIFNSFQEYIEAENMIFETLEDRVTHGTKVIK
Ga0207905_10144752	3300025048	Marine	MTEKIKPIFNSFQEYIEAENMIFQTLHERVTQGINNKE
Ga0207905_10694152	3300025048	Marine	MTEKIKPIFDSFQEYIQAEDMIFQTLHERVTNSTKDIE
Ga0208667_10407272	3300025070	Marine	MTEKIKPIFNSFQEYIEAEDMVFKTLHARVTQGTNNKE
Ga0207896_10033883	3300025071	Marine	MTKKLEPIFNSFQEYIEAENMIFETLEARVTHGNKDIK
Ga0207896_10044013	3300025071	Marine	MTKKLEPIFNSFQEYIEAENMIFETLEARVTHGIKGIE
Ga0207896_10075114	3300025071	Marine	MTEKIKPIFNSFQEYIEAENMIFETLQDRVTNGTKDIK
Ga0207896_10082913	3300025071	Marine	MTDKLKPIYDSFQEYIEAENMIFTTLHESVTTASKDK
Ga0208920_10173311	3300025072	Marine	MTEKIKPIFNSFQEYIESEDMVFQTLHARVTQGTNNKE
Ga0208298_10554901	3300025084	Marine	SFKKPMTEKIKPIFNSFQEYIESEDMVFQTLHARVTQGTNNKE
Ga0208157_10071057	3300025086	Marine	MTEKIKPIFNSFQEYIQAEDMIFQTLHDRVTHSTKDKE
Ga0208434_10312383	3300025098	Marine	KFMTNKIKPIFDSFQEYIQAEDMIFQTLHERVTQGTNNKE
Ga0208669_100159614	3300025099	Marine	MTEKIKPIFDSFQEYIQAEDMIFQTLHERVTQGTNNKE
Ga0209535_10151366	3300025120	Marine	MTEKIKPIFNSFQEYIEAENMIFQTLHERVTQGTNNKE
Ga0209535_10306504	3300025120	Marine	MTDKIKPIFNSFQEYIQAEDMVFQTLHERVTHSTKDKE
Ga0208919_10896082	3300025128	Marine	MTEKIKPIFNSFQEYIESEDMVFQTLHAGVTQGTNNKE
Ga0209336_100960752	3300025137	Marine	MTRKLEPIFNSFQEYIEAENMIFETLEDRVTHSTKVVK
Ga0209634_10307963	3300025138	Marine	MTRKLEPIFNSFQEYIEAENMIFETLEDRVTHSTKVIK
Ga0209756_13146812	3300025141	Marine	MTEKIKPIFNSFQEYIEAEDMIFETLHDRVTQASSTKE
Ga0209716_100104921	3300025626	Pelagic Marine	MTKKLKPIFDSFQEYIQAEDMIFETLHASMTIADKDK
Ga0209716_10409803	3300025626	Pelagic Marine	MTDKLKPIFNSFQEYIESEDMIFTTLHENMTIASKDKE
Ga0209603_10625643	3300025849	Pelagic Marine	MTKKLEPIFNSFQEYIEAENMIFETLEPRVTHGNKDIK
Ga0208924_1168052	3300027204	Estuarine	MTAKLKPIFDSFQEYIQAEDMIFQTLHERVTHSTKDKE
Ga0208973_100185315	3300027506	Marine	MTAKLKPIFDSFQEYIKAEDMIFTTLHENMTIASKDKE
Ga0209711_101741282	3300027788	Marine	MTKKLEPIFNSFQEYIEAENMIFETLEPRVTHGSKDIK
(restricted) Ga0233415_100087206	3300027861	Seawater	MTRKLEPIFNSFQEYIEAENMIFETLEDRVTHGTKVIK
(restricted) Ga0233415_100197073	3300027861	Seawater	MTNKIKPIFNSFQEYIEAEDMIFKTLQERVTHSTKDKE
(restricted) Ga0233415_100238423	3300027861	Seawater	MTEKIKPIFNSFQEYIETENMIFQTLHEMVTRGANNKE
(restricted) Ga0233415_100400133	3300027861	Seawater	MTKKLEPIFNSFQEYIEAENMIFETLEPRVTHGSKYIE
Ga0209404_101264953	3300027906	Marine	MTDKIKPIFDSFQEYIEAEDMIFETLHERVTQACSTKE
Ga0256368_10424372	3300028125	Sea-Ice Brine	MTKKLEPIFNSFQEYIEAENMIFETLEPRVTHGIKDIE
Ga0257106_12305791	3300028194	Marine	KKLMTDKLKPIYDSFQEYIEAENMIFTTLHESVTTASKDK
Ga0315331_105161662	3300031774	Seawater	MTDKLQPIFNSFKEYIESENMIFTTLHENMTIASKDKE