Metagenome / Metatranscriptome Family F103218

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F103218
Family Type	Metagenome / Metatranscriptome
Number of Sequences	101
Average Sequence Length	83 residues
Representative Sequence	VAKFPANATLSVFQGLLDTRPAKLVVLVLDITLIDVFLFFACVALLDLHRGFSVFSLWTAALFSFLLVYMVMVAHKDIKKY
Number of Associated Samples	93
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	2.00 %
% of genes near scaffold ends (potentially truncated)	97.03 %
% of genes from short scaffolds (< 2000 bps)	89.11 %
Associated GOLD sequencing projects	91
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.41

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (99.010 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (22.772 % of family members)
Environment Ontology (ENVO)	Unclassified (37.624 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (35.644 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 60.55% β-sheet: 0.00% Coil/Unstructured: 39.45%
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Predicted 3D Structure

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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.41
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.41
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF00903	Glyoxalase	65.35
PF12681	Glyoxalase_2	7.92
PF01557	FAA_hydrolase	5.94
PF00563	EAL	5.94
PF03480	DctP	2.97
PF00990	GGDEF	1.98
PF00027	cNMP_binding	0.99
PF13185	GAF_2	0.99
PF13385	Laminin_G_3	0.99
PF01513	NAD_kinase	0.99
PF00890	FAD_binding_2	0.99
PF03358	FMN_red	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG2200	EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant)	Signal transduction mechanisms [T]	5.94
COG3434	c-di-GMP phosphodiesterase YuxH/PdeH, contains EAL and HDOD domains	Signal transduction mechanisms [T]	5.94
COG4943	Redox-sensing c-di-GMP phosphodiesterase, contains CSS-motif and EAL domains	Signal transduction mechanisms [T]	5.94
COG5001	Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain	Signal transduction mechanisms [T]	5.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	99.01 %
Unclassified	root	N/A	0.99 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	99.01 %
Unclassified	root	N/A	0.99 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	99.01 %
Unclassified	root	N/A	0.99 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	97.03 %
Unclassified	root	N/A	0.99 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	79.21 %
Unclassified	root	N/A	0.99 %

Name	Rank	Taxonomy	Distribution
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	35.64 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2.97 %
Unclassified	root	N/A	0.99 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	35.64 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2.97 %
Unclassified	root	N/A	0.99 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001661\|JGI12053J15887_10604812	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	521	Open in IMG/M
3300002560\|JGI25383J37093_10059452	All Organisms → cellular organisms → Bacteria → Proteobacteria	1213	Open in IMG/M
3300002562\|JGI25382J37095_10016692	All Organisms → cellular organisms → Bacteria → Proteobacteria	2814	Open in IMG/M
3300002886\|JGI25612J43240_1025955	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	863	Open in IMG/M
3300002915\|JGI25387J43893_1036128	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	666	Open in IMG/M
3300002917\|JGI25616J43925_10005191	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	5582	Open in IMG/M
3300005163\|Ga0066823_10084175	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	630	Open in IMG/M
3300005174\|Ga0066680_10247725	All Organisms → cellular organisms → Bacteria → Proteobacteria	1132	Open in IMG/M
3300005549\|Ga0070704_101322976	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	660	Open in IMG/M
3300005879\|Ga0075295_1018441	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	802	Open in IMG/M
3300006572\|Ga0074051_11037803	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	505	Open in IMG/M
3300006794\|Ga0066658_10241853	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	963	Open in IMG/M
3300007265\|Ga0099794_10048646	All Organisms → cellular organisms → Bacteria → Proteobacteria	2036	Open in IMG/M
3300007265\|Ga0099794_10780344	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	511	Open in IMG/M
3300009012\|Ga0066710_102558009	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	736	Open in IMG/M
3300009090\|Ga0099827_10130361	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2036	Open in IMG/M
3300009090\|Ga0099827_10191268	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1698	Open in IMG/M
3300009143\|Ga0099792_10077485	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1692	Open in IMG/M
3300009162\|Ga0075423_12689346	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	544	Open in IMG/M
3300009814\|Ga0105082_1072298	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	614	Open in IMG/M
3300010304\|Ga0134088_10206095	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	942	Open in IMG/M
3300010329\|Ga0134111_10221123	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	770	Open in IMG/M
3300010333\|Ga0134080_10572266	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	546	Open in IMG/M
3300010362\|Ga0126377_13615663	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	500	Open in IMG/M
3300011269\|Ga0137392_10660661	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	866	Open in IMG/M
3300011410\|Ga0137440_1070927	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	690	Open in IMG/M
3300011413\|Ga0137333_1069280	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	808	Open in IMG/M
3300011416\|Ga0137422_1010926	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	2087	Open in IMG/M
3300011428\|Ga0137456_1007657	All Organisms → cellular organisms → Bacteria → Proteobacteria	1997	Open in IMG/M
3300011431\|Ga0137438_1085002	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	957	Open in IMG/M
3300011433\|Ga0137443_1261236	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	515	Open in IMG/M
3300011437\|Ga0137429_1207714	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	611	Open in IMG/M
3300011442\|Ga0137437_1041697	All Organisms → cellular organisms → Bacteria → Proteobacteria	1572	Open in IMG/M
3300011442\|Ga0137437_1235315	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	635	Open in IMG/M
3300012198\|Ga0137364_11202009	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	568	Open in IMG/M
3300012202\|Ga0137363_10351392	All Organisms → cellular organisms → Bacteria → Proteobacteria	1220	Open in IMG/M
3300012203\|Ga0137399_10875453	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	756	Open in IMG/M
3300012205\|Ga0137362_10977822	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	721	Open in IMG/M
3300012207\|Ga0137381_11408177	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	589	Open in IMG/M
3300012226\|Ga0137447_1044679	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	782	Open in IMG/M
3300012349\|Ga0137387_11057332	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	580	Open in IMG/M
3300012358\|Ga0137368_10633571	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	677	Open in IMG/M
3300012358\|Ga0137368_10841828	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	564	Open in IMG/M
3300012360\|Ga0137375_10318907	All Organisms → cellular organisms → Bacteria → Proteobacteria	1396	Open in IMG/M
3300012362\|Ga0137361_11854978	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	520	Open in IMG/M
3300012671\|Ga0137318_1025913	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	597	Open in IMG/M
3300012918\|Ga0137396_11066545	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	580	Open in IMG/M
3300012922\|Ga0137394_11328594	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	581	Open in IMG/M
3300012944\|Ga0137410_10100352	All Organisms → cellular organisms → Bacteria → Proteobacteria	2145	Open in IMG/M
3300012944\|Ga0137410_11631112	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	566	Open in IMG/M
3300012948\|Ga0126375_11080465	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	659	Open in IMG/M
3300012976\|Ga0134076_10148862	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	958	Open in IMG/M
3300014870\|Ga0180080_1050756	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	685	Open in IMG/M
3300015257\|Ga0180067_1142979	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	546	Open in IMG/M
3300015374\|Ga0132255_105857498	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	520	Open in IMG/M
3300017944\|Ga0187786_10091756	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1005	Open in IMG/M
3300017974\|Ga0187777_10578870	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	790	Open in IMG/M
3300018054\|Ga0184621_10023898	All Organisms → cellular organisms → Bacteria → Proteobacteria	1904	Open in IMG/M
3300018056\|Ga0184623_10439842	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	566	Open in IMG/M
3300018059\|Ga0184615_10329200	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	848	Open in IMG/M
3300018060\|Ga0187765_11270449	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	520	Open in IMG/M
3300018063\|Ga0184637_10011715	All Organisms → cellular organisms → Bacteria	5260	Open in IMG/M
3300018063\|Ga0184637_10223381	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1152	Open in IMG/M
3300018064\|Ga0187773_11238817	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	504	Open in IMG/M
3300018071\|Ga0184618_10278830	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	710	Open in IMG/M
3300018074\|Ga0184640_10118857	All Organisms → cellular organisms → Bacteria → Proteobacteria	1162	Open in IMG/M
3300018089\|Ga0187774_10028645	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	2285	Open in IMG/M
3300018431\|Ga0066655_10352084	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	967	Open in IMG/M
3300019249\|Ga0184648_1418509	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	504	Open in IMG/M
3300019883\|Ga0193725_1110227	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	640	Open in IMG/M
3300021086\|Ga0179596_10455521	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	647	Open in IMG/M
3300021333\|Ga0210324_1066551	All Organisms → cellular organisms → Bacteria → Proteobacteria	1161	Open in IMG/M
3300025905\|Ga0207685_10385078	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	715	Open in IMG/M
3300026297\|Ga0209237_1277173	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	514	Open in IMG/M
3300026306\|Ga0209468_1011994	All Organisms → cellular organisms → Bacteria → Proteobacteria	3209	Open in IMG/M
3300026313\|Ga0209761_1104973	All Organisms → cellular organisms → Bacteria → Proteobacteria	1403	Open in IMG/M
3300026320\|Ga0209131_1368670	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	535	Open in IMG/M
3300026333\|Ga0209158_1181717	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	753	Open in IMG/M
3300026333\|Ga0209158_1281184	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	571	Open in IMG/M
3300026371\|Ga0257179_1047070	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	557	Open in IMG/M
3300026507\|Ga0257165_1031879	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	921	Open in IMG/M
3300026537\|Ga0209157_1268708	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	647	Open in IMG/M
3300026538\|Ga0209056_10512434	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	623	Open in IMG/M
3300027209\|Ga0209875_1016545	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	868	Open in IMG/M
3300027383\|Ga0209213_1004378	All Organisms → cellular organisms → Bacteria → Proteobacteria	2441	Open in IMG/M
3300027821\|Ga0209811_10054600	All Organisms → cellular organisms → Bacteria → Proteobacteria	1373	Open in IMG/M
3300027882\|Ga0209590_10151242	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1439	Open in IMG/M
3300027882\|Ga0209590_10654794	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	674	Open in IMG/M
3300028784\|Ga0307282_10419336	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	649	Open in IMG/M
3300031576\|Ga0247727_10364934	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1185	Open in IMG/M
3300031679\|Ga0318561_10185398	All Organisms → cellular organisms → Bacteria → Proteobacteria	1126	Open in IMG/M
3300031682\|Ga0318560_10260374	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	932	Open in IMG/M
3300031769\|Ga0318526_10349382	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	605	Open in IMG/M
3300031820\|Ga0307473_10539044	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	795	Open in IMG/M
3300031833\|Ga0310917_10918598	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	589	Open in IMG/M
3300032783\|Ga0335079_11713224	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	614	Open in IMG/M
3300033500\|Ga0326730_1059900	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	724	Open in IMG/M
3300033502\|Ga0326731_1032345	All Organisms → cellular organisms → Bacteria → Proteobacteria	1249	Open in IMG/M
3300033806\|Ga0314865_041691	All Organisms → cellular organisms → Bacteria	1174	Open in IMG/M
3300033813\|Ga0364928_0104784	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	668	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.02%
Host-Associated	Host-Associated	1.98%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	76.24%
Aquatic	Environmental → Aquatic	21.78%
Plants	Host-Associated → Plants	1.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	72.28%
Sediment	Environmental → Aquatic → Sediment	19.80%
Peat	Environmental → Terrestrial → Peat	1.98%
Freshwater	Environmental → Aquatic → Freshwater	0.99%
Marine	Environmental → Aquatic → Marine	0.99%
Cave	Environmental → Terrestrial → Cave	0.99%
Floodplain	Environmental → Terrestrial → Floodplain	0.99%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.99%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	57.43%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	19.80%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	7.92%
Loam	Environmental → Terrestrial → Soil → Loam	4.95%
Sand	Environmental → Terrestrial → Soil → Sand	1.98%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.98%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.99%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	0.99%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.99%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.99%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.99%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	33.66%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	19.80%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	16.83%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	7.92%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	6.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.97%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.98%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	1.98%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.98%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.99%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	0.99%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.99%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.99%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.99%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	22.77%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	12.87%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	9.90%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	6.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	6.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.94%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	4.95%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	3.96%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.98%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.98%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.98%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	1.98%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	1.98%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.99%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	0.99%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.99%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.99%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	0.99%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	0.99%
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	0.99%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.99%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.99%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.99%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300002560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm	Environmental	Open in IMG/M
3300002562	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300002886	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm	Environmental	Open in IMG/M
3300002915	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_20cm	Environmental	Open in IMG/M
3300002917	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cm	Environmental	Open in IMG/M
3300005163	Soil and rhizosphere microbial communities from Laval, Canada - mgHMB	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005879	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_0N_301	Environmental	Open in IMG/M
3300006572	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHPB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009814	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_50_60	Environmental	Open in IMG/M
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental	Open in IMG/M
3300010329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_11112015	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011410	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT222_2	Environmental	Open in IMG/M
3300011413	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT231_2	Environmental	Open in IMG/M
3300011416	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT551_2	Environmental	Open in IMG/M
3300011428	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT615_2	Environmental	Open in IMG/M
3300011431	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT157_2	Environmental	Open in IMG/M
3300011433	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT300_2	Environmental	Open in IMG/M
3300011437	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT736_2	Environmental	Open in IMG/M
3300011442	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT138_2	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012226	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT400_2	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012671	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT300_2	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012976	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaG	Environmental	Open in IMG/M
3300014870	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT560_16_10D	Environmental	Open in IMG/M
3300015257	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT231_16_10D	Environmental	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017944	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_10_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018056	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1	Environmental	Open in IMG/M
3300018059	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_coex	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300018063	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b2	Environmental	Open in IMG/M
3300018064	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MG	Environmental	Open in IMG/M
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental	Open in IMG/M
3300018074	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b2	Environmental	Open in IMG/M
3300018089	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_20_MG	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300019249	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019883	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2a2	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021333	Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Oregon, United States ? S.191 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026297	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026306	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102 (SPAdes)	Environmental	Open in IMG/M
3300026313	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)	Environmental	Open in IMG/M
3300026333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140 (SPAdes)	Environmental	Open in IMG/M
3300026371	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-01-B	Environmental	Open in IMG/M
3300026507	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-12-B	Environmental	Open in IMG/M
3300026537	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135 (SPAdes)	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300027209	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_0_10 (SPAdes)	Environmental	Open in IMG/M
3300027383	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M2 (SPAdes)	Environmental	Open in IMG/M
3300027821	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300031576	Biofilm microbial communities from Wishing Well Cave, Virginia, United States - WW16-25	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300033500	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF7AN SIP fraction	Environmental	Open in IMG/M
3300033502	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF9FY SIP fraction	Environmental	Open in IMG/M
3300033806	Tropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_50_20	Environmental	Open in IMG/M
3300033813	Sediment microbial communities from East River floodplain, Colorado, United States - 30_j17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12053J15887_106048121	3300001661	Forest Soil	STRMLVAKFPANATLSVFQGLLDTRPAKLVVLVLDITLIDVFLFFACVALLDLHRGFSVFSLWTAALFSFLLVYMVMVAHKDIKKY*
JGI25383J37093_100594523	3300002560	Grasslands Soil	VLAAALAKCVLAVIWWTTRMLVAKFPANPALSACQKLLDTRPAKLVVLILDITLIDVFLFFAGVALLDLSQNFSVFSLWSAMLFSFLLVYMVMVANKDIKKY*
JGI25382J37095_100166924	3300002562	Grasslands Soil	LAKCVLAVIWWTTRMLVAKFPANAALSACQKLLDTRPAKLVVLILDITLIDVFLFFAGVALLDLSQNFSVFSLWSAMLFSFLLVYMVMVANKDIKKY*
JGI25612J43240_10259552	3300002886	Grasslands Soil	WTTRMLVAKFPANATLSVFQGWLDTRPAKLVVLVLDITLIDVFLFFACVALLDLHRGFSVFSLWTAALFSFLLVYMVMVAHKDIKKY*
JGI25387J43893_10361282	3300002915	Grasslands Soil	TRMLVAKFPSNPALSACQKVLNTRPAKLVVLVLDITLIDVFLFFAGVALLDLRQSFSVFSLWSAMLFSFLLVYMVMVAHQDIKKY*
JGI25616J43925_100051911	3300002917	Grasslands Soil	LAKCVLAVIWWTTRMLVSKFPANQALSACQKLLNTRPAKLVVLVLDITLIDVFLFFAGVALLDLSQSFSIFSLWSAMLFSFLLVYMVMVANKDIKKY*
Ga0066823_100841751	3300005163	Soil	NNRVAKMLVLLLDITLIDVFLFFACVALLDLSRGFSIFSLWTAALFSFLLAYMVIVADADIKRY*
Ga0066680_102477253	3300005174	Soil	ACQKLLDTRPAKLVVLILDITLIDVFLFFAGVALLDLRQSFSVFSLWSAMLFSFLLVYMVMVAHKDIKKY*
Ga0070694_1015427131	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	KFALSITWWLTRLLVARFPKNTALTALSGLFNTRPAKLLILILDVTLIDVFLFFAIVAQLDLRAQFSMFSLWAAALFSFLLIYMVMLTHRDVRRY*
Ga0070704_1013229762	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	AKFPANAAISMFQELLNTRPAKLVVLVLDITLIDVFLFFACVSLLDLHRGFSIFSLWTATLFSFLLAYMVMVAHADIKKY*
Ga0075295_10184412	3300005879	Rice Paddy Soil	GLLDTRPAKLVVLVLDITLIDVFLFFAGVALLDLHRGFSIFALWTAALFSFLLVYMVMVAHKDIKKY*
Ga0074051_110378032	3300006572	Soil	VVVAALAKSLIAVVWWTTRVLVAKFPANVAVTAFQGLLNTKPAKLVVLVLDVTLIDVFLFFACVALLDLHRGFSIFSLWSAALFSFLLAYMVIVAHADIKRY*
Ga0066658_102418531	3300006794	Soil	CVLAVIWWTTRMLVAKFPANPALSACQKVLDTRPAKLVVLILDITLIDVFLFFAGVALLDLRQSFSVFSLWSAMLFSFLLVYMVMVAHKDIKKY*
Ga0099794_100486461	3300007265	Vadose Zone Soil	VIWWTTRMLVAKFPANAALSACQKLLDTRPAKLVVLILDITLIDVFLFFAGVALLDLSQNFSVFSLWSAMLFSFLLVYMVMVANKDIKKY*
Ga0099794_107803441	3300007265	Vadose Zone Soil	NPALSACQKLLETRPAKLVVLVLDITLIDVFLFFAGVALLDLRQSFSVFSLWSAMLFAFLLVYMVMVAHKDIKKY*
Ga0066710_1025580092	3300009012	Grasslands Soil	CVLAVIWWTTRMLVSKFPANPALSAWQKALDTRPAKLVVLILDITLIDVFLFFAGVALLDLSQNFSVFSLWSAMLFSFLLVYMVMVANKDIKKY
Ga0099827_101303611	3300009090	Vadose Zone Soil	SVFQGLLDTRPAKLVVLVLDITLIDVFLFFACVALLDLHRGFSIFSLWTAALFSFLLVYMVMVAHRDIRKY*
Ga0099827_101912681	3300009090	Vadose Zone Soil	TRMLVAKFPADPALSACQKLLDTRPAKLVVLILDITLIDVFLFFAGVALLDLSQNFSVFSLWSAMLFSFLLVYMVMVSHKDIKKY*
Ga0099792_100774853	3300009143	Vadose Zone Soil	VLVAKFPANATLSVFQGLIDTRPAKLVVLVLDITLIDVFLFFACVALLDLHRGFSIFSLWTAALFSFLLVYMVMVAHKDIKKY*
Ga0075423_126893461	3300009162	Populus Rhizosphere	AVIWWTTRMLVAKFPANPALSACQKLLDTRPAKLVVLILDITLIDVFLFFAGVALLDLSQSFSVFSLWSAMLFSFLLVYMVMVAHKDIKKY*
Ga0105082_10722981	3300009814	Groundwater Sand	KFPLNPALALFQKQLDRRPAKLIVLVLDITLIDVFLFFAGVALIDLRSGFSVFSLWTAALFLFLLAYMVMVAHSDIKKY*
Ga0134088_102060951	3300010304	Grasslands Soil	VLAAALAKCVLAVIWWTTRMLVAKFPANAALSACQKLLDTRPAKLVVLILDITLIDVFLFFAGVALLDLSQNFSVFSLWSAMLFSFLLVYMVMVANKDIKKY*
Ga0134111_102211231	3300010329	Grasslands Soil	VLAAALAKCVLAVIWWTTRMLVSKFPANPALSAWQKGLDTRPAKLVVLILDITLIDVFLFFAGVALLDLSQSFSVFSLWSAMLFSFLLVYMVMVAHKDIKKY*
Ga0134080_105722662	3300010333	Grasslands Soil	TRMLVSKFPANPALSACQKLLDTRPAKLVVLVLDITLIDVFLFFAGVALLDLSQSFSVFSLWSAMLFSFLLVYMVMVAHKDIKKY*
Ga0126377_136156631	3300010362	Tropical Forest Soil	KCVLAVLWWTMRMLVTKFPASEAATGLEVLLNNRGAKLLVLVLDVTLIDVFLFFACVALLDLHRGFSIFSLWTAALFSFLLAYMVIVAHADIKRY*
Ga0137392_106606612	3300011269	Vadose Zone Soil	WTTRMLVAKFPANATLSVFQDLLNTRAAKLVVLVLDITLIDVFLFFACVALLDLHRGFSIFSLWTAALFSFLFAYMVMVAHSDIKKY*
Ga0137440_10709271	3300011410	Soil	LLNTRPAKLAVLILDITLIDVFLFFAGVALLDLRSGFSMFSLWSAALFSFLLVYMVMVTHTDIKKY*
Ga0137333_10692802	3300011413	Soil	WWTTRVIVAKFPANAAASTVQGALNTRPAKLVVLILDITLIDVFLFFAGVALLDLRSGFSMFSLWSAALFSFLLVYMVMVTHTDIKKY*
Ga0137422_10109261	3300011416	Soil	LAAALIKCVLAVIWWTTRVIVAKFPANAAASTVQGALNTRPAKLVVLILDITLIDVFLFFAGVALLDLRSGFSMFSLWSAALFSFLLVYMVMVTHADIKKY*
Ga0137456_10076571	3300011428	Soil	QGMLNTRAAKLVVLVLDITLIDVFLFFAIVALLDLHRGFSVFSLWTAALFAFLLVYMVMVAHKDIKKY*
Ga0137438_10850021	3300011431	Soil	TRTLVAKFPGSAILVAFQAMLGTKPAKLVVLVLDITLIDVFMFFAVVALLDLHRGFSVFSLWTAALFSFLLVYMVMVAHADLKKY*
Ga0137443_12612361	3300011433	Soil	TARVVVAKFPKNVAAAALQGLLNTRPAKLVVLVLDITLIDVFLFFAGVALLDLRSGFSMFSLWSAALFSFLLVYMVMVTHTDIKKY*
Ga0137429_12077141	3300011437	Soil	ATVQGLLNTRPAKLVVLVLDITLIDVFLFFAGVALLDLRSGFSMFSLWSAALFSFLLVYMVMVTHTDIKKY*
Ga0137437_10416973	3300011442	Soil	AALLKSVLAVLWWSMRMLARKFPASDSVSKFQALLNNRPAKMVVLVLDVTLIDVFLFFACVALLDLHRGFSIFSLWTAALFSFLLAYMVIVAHADLKKY*
Ga0137437_12353152	3300011442	Soil	VAWWTTRVLVAKFPANNTLSTVQGMLNTRAAKLVVLVLDVTLIDVFLFFAVVALLDLHRGFSVFSLWTAALFSFLLVYMVMVAHKDIKKY*
Ga0137364_112020091	3300012198	Vadose Zone Soil	SNPALSTFQKLLDTRPAKLVVLVLDVTLIDVFLFFAGVALLDLHRGFSIFSLWTAALFSFLFAYMVMVAHSDIKKY*
Ga0137363_103513923	3300012202	Vadose Zone Soil	VAKFPANATLSVFQGLLDTRPAKLVVLVLDITLIDVFLFFACVALLDLHRGFSVFSLWTAALFSFLLVYMVMVAHKDIKKY*
Ga0137399_108754531	3300012203	Vadose Zone Soil	WTMRVLVAKFPASGAVSQFRAMLNNRAAKLVVLVLDVTLIDVFLFFACVALLDLSRGFSIFSLWTAALFSFLLAYMVIVAHADIKRY*
Ga0137362_109778221	3300012205	Vadose Zone Soil	LTKCVLAVIWWTTRMLVAKFPANATLSVFQGLLDTRPAKLVVLVLDITLIDVFLFFACVALLDLHRGFSIFSLWTAALFSFLLVYMVMVAHKDIKKY*
Ga0137381_114081771	3300012207	Vadose Zone Soil	KCVLAVIWWTTRMLVAKFPANPALSACQKLLDTRPAKLVVLILDITLIDVFLFFAGVALLDLSQNFSVFSLWSAMLFSFLLVYMVMVANKDIKKY*
Ga0137447_10446791	3300012226	Soil	DTRPAKLVVLVLDVTLIDVFLFFAGVALLDLNRGFSMFSLWTAALFSFLLAYMVMVAHSDIKKY*
Ga0137387_110573321	3300012349	Vadose Zone Soil	VFQGLLNTRPAKLAVLVLDITLIDVFLFFAGVALLDLHRGFSVFSLWTAALFSFLLVYMVMVAHSDIKKY*
Ga0137368_106335712	3300012358	Vadose Zone Soil	LNTRPAKLVVLVLDVTLIDVFLFFAGVALLDLHRGFSVFSLWTAALFSFLFAYMVMVAHSDIKKY*
Ga0137368_108418283	3300012358	Vadose Zone Soil	RPAKLVVLVLDVTLIDVFLFFAGVALLDLHRGFSIFSLWTAALFSLLFAYMVMVAHSDIKKY*
Ga0137375_103189073	3300012360	Vadose Zone Soil	PAKLVVLVLDVTLIDVFLFFAGVALLDLHRGFSVFSLWTAALFSFLFAYMVMVAHSDIKKY*
Ga0137361_118549781	3300012362	Vadose Zone Soil	PAKLVVLILDITLIDVFLFFAGVALLDLRQSFSVFSLWSAMLFSFLLVYMVMVAHKDIKKY*
Ga0137318_10259131	3300012671	Soil	PKNVAASAVQGLLNTRPAKLVVLILDITLIDVFLFFAGVALLDLRSGFSMFSLWSAALFSFLLVYMVMVTHTDIKKY*
Ga0137396_110665452	3300012918	Vadose Zone Soil	ACQKLLDTRPAKLVVLILDITLIDVFLFFAGVALLDLSQNFSVFSLWSAMLFSFLLVYMVMVANKDIKKY*
Ga0137394_113285941	3300012922	Vadose Zone Soil	KCVLAVIWWTTRMLVAKFPANATLSVFQGLLDTRPAKLVVLVLDITLIDVFLFFAFVALLDLHRGFSIFSLWTAALFSFLLVYMVMVAHKDIKKY*
Ga0137410_101003521	3300012944	Vadose Zone Soil	QTLLNNRPAKMVVLVLDVTLIDVFLFFACVALLDLHRGFSIFSLWTAALFSFLLAYMVIVAHADMKKY*
Ga0137410_116311121	3300012944	Vadose Zone Soil	SAFQKLLNTRPAKLVVLILDITLIDVFLFFAAVAMMDLHRGFSMFSLWSAALFSFLLIYMIMVANTDLKKY*
Ga0126375_110804651	3300012948	Tropical Forest Soil	TGLEVLLNNRGAKLLVLVLDVTLIDVFLFFACVALLDLHRGFSIFSLWTAALFSFLLAYMVIVAHADIKRY*
Ga0134076_101488623	3300012976	Grasslands Soil	SKFPANPALSAWQKLLDTRPAKLVVLILDITLIDVFLFFAGVALLDLSQNFSVFSLWSAMLFSFLLVYMVMVANKDIKKY*
Ga0180080_10507561	3300014870	Soil	FPANDTLSTLQGMLNTRAAKLVVLVLDITLIDVFLFFAIVALLDLHRGFSVFSLWTAALFAFLLVYMVMVAHKDIKKY*
Ga0180067_11429792	3300015257	Soil	WTTRVVVAKFPANAAASAVQGLITTRPAKLVVLILDITLIDVFLFFAGVALLDLRSGFSMFSLWSAALFSFLLVYMVMVTHADIKKY*
Ga0132255_1058574981	3300015374	Arabidopsis Rhizosphere	GVSSFRSLLNHRAAKLVVLVLDVTLIDVFLFFACVALLDLHRGFSVFSLWTAALFSFLLAYMVIVAHADIKKY*
Ga0187786_100917561	3300017944	Tropical Peatland	LYAALFKSVLAVLWWTMRVLVRKFPASDGVSKLRTVLDNRPAKMVVLVLDVTLIDVFLFFACVALLDLHRGFSIFSLWTAALFSFLLAYMVLVAHADLKRY
Ga0187777_105788703	3300017974	Tropical Peatland	ASGMQMLLNNRVAKLVVLVLDVTLIDVFLFFACVALLDLHRGFSIFSLWTAALFSFLLAYMVMVAHADIKRY
Ga0184621_100238981	3300018054	Groundwater Sediment	ANATLSVFQGLLNTRPAKLVVLVLDITLIDVFLFFAGVALLDLHRGFSVFSLWTAALFSFLLVYMVMVAHADIKKY
Ga0184623_104398422	3300018056	Groundwater Sediment	FFQCLLNTRPAKLVVLVLDITLIVVFLFFAVVALLDLHRGFSVFSLWTAALFSFLLVYMVMVAHADIKKY
Ga0184615_103292001	3300018059	Groundwater Sediment	KCVFAVIWWTARVVVAKFPKNVAASAVQGLINTRPAKLVVLILDITLIDVFLFFAGVALLDLRSGFSMFSLWSAALFSFLLVYMVMVTHTDIKKY
Ga0187765_112704491	3300018060	Tropical Peatland	VLYAALAKCILAVLWWTMRVVVAKFPASDAASGLQMLLNNRVAKLVVLVLDVTLIDVFMFFACVALLDLYRGFSIFSLWTAALFSFLLAYMVMVAHADIKRY
Ga0184637_100117154	3300018063	Groundwater Sediment	AVLAAALVKCVLAVIWWTTRVVVAKFPANAAASAVQGLLNTRPAKLVVLVLDITLIDVFLFFAGVALLDLRSGFSMFSLWSAALFSFLLVYMVMVTHADIKKY
Ga0184637_102233813	3300018063	Groundwater Sediment	KCVLAVIWWTTRVVVAKFPKNAAASALQGLLNTRPAKLVVLVLDITLIDVFLFFAGVALLDLRSGFSMFSLWSAALFSFLLVYMVMVTHADIKKY
Ga0187773_112388171	3300018064	Tropical Peatland	KAVLAVLWWTMRVLVSKFPASEAAAGLQTVLSNRPAKLVILILDVTLIDVFLFFACVALLDLHRGFSIFALWTAALFSFLLAYMVMVAHADIKKY
Ga0184618_102788301	3300018071	Groundwater Sediment	FAKCVLAIIWWTTRVLVAKFPLNSTLAIFQKLLDTRPAKLFVLVLDVTLIDVFLFFAGVALIDLHSGFSIFSLWTAALFLFLLAYMVMVAHSDIKKY
Ga0184640_101188573	3300018074	Groundwater Sediment	SVFQKVLDTRPAKLVVVVLDITLIDVFLFFAGVALLDLSRGFSMFSLWTAALFSFLLAYMVMVAHSDIKKY
Ga0187774_100286451	3300018089	Tropical Peatland	FPANVALSAFQSALGTRAAKLVVLILDITLIDVFLFFAGVALLDLHRGFSVFSLWTAMLFSFLFVYMVMVTHADIKKY
Ga0066655_103520843	3300018431	Grasslands Soil	LAVIWWTTRMLVAKFPANPALSAAQKLLDTRPAKLIVLVLDITLIDVFLFFAGVALLDLSQNFSVFSLWSAMLFSFLLVYMVMVAHKDIKKY
Ga0184648_14185092	3300019249	Groundwater Sediment	VVAKFPKNVAASAVQGLLNTRPAKLVVLVLDITLIDVFLFFAGVALLDLRSGFSMFSLWSAALFSFLLVYMVLVTHTDIKKY
Ga0193725_11102271	3300019883	Soil	IFQGLLNTRPAKLVVLVLDITLIDVFLFFACVSLLDLHRGFSIFSLWTAALFSFLLVYMVMVANSDIKKY
Ga0179596_104555211	3300021086	Vadose Zone Soil	TRVLAAKFPANAALSVFQGLLDTRPAKLVVLVLDITLIDVFLFFACVALLDLHRGFSIFSLWTAALFSFLLVYMVMVAHKDIRKY
Ga0210324_10665513	3300021333	Estuarine	LNTRPAKLAVLVLDVTLIDVFLFFACVALLDLHRGFSIFSLWTAALFSFLLAYMVIVAHADIKRY
Ga0207685_103850782	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	LAAALAKCVLAVIWWTTRMLVSKFPANPALSACQKLLNTRPAKLVVLVLDITLIDVFLFFAGVALLDLRQSFSIFSLWSAMLFSFLLVYMVMVAHSNIKKY
Ga0209237_12771732	3300026297	Grasslands Soil	SAWQKALETRPAKLVVLILDITLIDVFLFFAGVALLDLRQSFSVFSLWSAMLFSFLLVYMVMVAHKDIKKY
Ga0209468_10119945	3300026306	Soil	WQKGLDTRPAKLVVLILDITLIDVFLFFAGVALLDLSQSFSVFSLWSAMLFSFLLVYMVMVAHKDIKKY
Ga0209761_11049731	3300026313	Grasslands Soil	TTRMLVAKFPANPALSACQKLLDTRPAKLVVLILDITLIDVFLFFAGVALLDLSQNFSVFSLWSAMLFSFLLVYMVMVANKDIKKY
Ga0209131_13686702	3300026320	Grasslands Soil	ALSVWQKLLDTRPAKLVVLVLDITLIDVFLFFAGVALLDLRQNFSIFSLWSAMLFSFLLVYMVMVAHKDIKKY
Ga0209158_11817171	3300026333	Soil	LSACQKLLDTRPAKLVVLILDITLIDVFLFFAGVALLDLSQNFSVFSLWSAMLFSFLLVYMVMVANKDIKKY
Ga0209158_12811841	3300026333	Soil	WWTTRMLVSKFPANPALSAWQKALDTRPAKLVVLILDITLIDVFLFFAGVALLDLSQNFSVFSLWSAMLFSFLLVYMVMVANKDIKKY
Ga0257179_10470701	3300026371	Soil	LSACQKLLDTRPAKLVVLILDITLIDVFLFFAGVALLDLSQNFSVFSLWSAMLFSFLLVYMVMVSHKDIKKY
Ga0257165_10318793	3300026507	Soil	TLSVFQGLLDTRPAKLVVLVLDITLIDVFLFFACVALLDLHRGFSTFSLWTAALFSFLLVYMVMVAHKDIKKY
Ga0209157_12687082	3300026537	Soil	LAVTWWTTRMLVSKFPANPALSAWQKALDTRPAKLVVLILDITLIDVFLFFAGVALLDLSQSFSVFSLWSAMLFSFLLVYMVMVAHKDIKKY
Ga0209056_105124342	3300026538	Soil	VLAVIWWTTRMLVAKFPANAALSACQKLLDTRPAKLVVLILDITLIDVFLFFAGVALLDLSQNFSVFSLWSAMLFSFLLVYMVMVANKDIKKY
Ga0209875_10165451	3300027209	Groundwater Sand	CVLAVIWWTTRMVVAKFPANAAAATVQGLLNTRPAKLVVLILDITLIDVFLFFAGVALLDLRSGFSMFSLWSAALFSFLLVYMVMVTHADIKKY
Ga0209213_10043782	3300027383	Forest Soil	MLVSKFPANPALSALQKMLETRPAKLVVLILDITLIDVFLFFAGVALLDLSQSFSVFSLWSAMLFSFLLVYMVMVAHKDIKKY
Ga0209811_100546001	3300027821	Surface Soil	LVRKFPASGGVSQFQTLLNNRVAKMLVLLLDITLIDVFLFFACVALLDLSRGFSIFSLWTAALFSFLLAYMVIVAHSDIKRY
Ga0209590_101512421	3300027882	Vadose Zone Soil	DTRPAKLVVLILDITLIDVFLFFAGVALLDLSQNFSVFSLWSAMLFSFLLVYMVMVSHKDIKKY
Ga0209590_106547941	3300027882	Vadose Zone Soil	KFPANATLSVFQGLLDTRPAKLVVLVLDVTLIDVFLFFACVALLDLHRGFSVFSLWTAALFSFLLVYMVMVAHKDIKKY
Ga0307282_104193361	3300028784	Soil	LAVIWWTTRMLVAKFPANAALSVFQGLLDTRPAKLVVLVLDITLIDVFLFFACVALLDLHRGFSIFSLWTAALFAFLLVYMVMVAHKDIKKY
Ga0247727_103649341	3300031576	Biofilm	VLVAKFPASAVMSAFQSVLETRPAKLVVLILDITLIDVFLFFAVVAILDLYRGFSVFSLWTAALFSFRLIYMIMVAHSDIKKY
Ga0318561_101853981	3300031679	Soil	EAATGLQVLLNNRAAKLLILVLDVTLIDVFLFFAAVALLDLSRGFSIFSLWTAALFAFLLAYMVIVAHADIKRY
Ga0318560_102603741	3300031682	Soil	VLYAALAKCVLAVLWWTMRVLVAKFPASEAATGLQVLLNNRAAKLLILVLDVTLIDVFLFFAAVALLDLSRGFSIFSLWTAALFAFLLAYMVIVAHADIKRY
Ga0318526_103493822	3300031769	Soil	ISSFAATGLQVLLNNRAAKLLILVLDVTLIDVFLFFAAVALLDLSRGFSIFSLWTAALFAFLLAYMVIVAHADIKRY
Ga0307473_105390441	3300031820	Hardwood Forest Soil	ALFQEMLNTRPAKLVVLVLDITLIDVFLFFAGVALLDLHRGFSVFSLWTAALFSFLLAYMVMVAHADIKKY
Ga0310917_109185982	3300031833	Soil	VLYAALAKCVLAVLWWTMRVLVAKFPASEAATGLQVLLNNRAAKLLILVLDVTLIDVFLFFAAVALLDLSRGFSIFSLWTATLFAFLLAYMVIVAHADIKRY
Ga0335079_117132241	3300032783	Soil	KFPRNTALTAFQTVLATRPAKLIVLILDITLIDVFLFFAGVALLDLHRGFSIFSLWTATLFSFLFVYMVMVAHADIKKY
Ga0326730_10599001	3300033500	Peat Soil	ASEAAAGLQAVLSNRPAKLVILILDVTLIDVFLFFACVALLDLHRGFSIFSLWTAALFSFLLAYMVMVAHADIKRY
Ga0326731_10323451	3300033502	Peat Soil	RPAKMVVLVLDVTLIDVFLFFACVALLDLHRGFSIFSLWTAALFSFLLAYMVMVAHADIKRY
Ga0314865_041691_2_232	3300033806	Peatland	RSGAITLINRALDTKPAKLVVLVLDVTLIDVFLFFAVVASLDLRNQFTYFSLWSAALFTFLFVYMVLITHNDVKRY
Ga0364928_0104784_358_666	3300033813	Sediment	VLAAALAKCVLALIWWTTRVLVAKFPLNPALALFQKQLDRRPAKLIVLVLDITLIDVFLFFAGVALLDLYRGFSMFSLWTAALFSFLLAYMVMVAHSDIKKY

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F103218

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences