Metagenome / Metatranscriptome Family F103207

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F103207
Family Type	Metagenome / Metatranscriptome
Number of Sequences	101
Average Sequence Length	66 residues
Representative Sequence	MEETAAAAVTAPPPDAPTASGSLDDIVERWWADHFPGSPVAQVTSAWNHAFAAKEELKRRLVNLSGGVL
Number of Associated Samples	80
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	91.09 %
% of genes near scaffold ends (potentially truncated)	7.92 %
% of genes from short scaffolds (< 2000 bps)	86.14 %
Associated GOLD sequencing projects	73
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.53

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (100.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (39.604 % of family members)
Environment Ontology (ENVO)	Unclassified (49.505 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (43.564 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 42.27% β-sheet: 0.00% Coil/Unstructured: 57.73%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.53
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.53
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF05135	Phage_connect_1	9.90
PF01850	PIN	0.99
PF00083	Sugar_tr	0.99
PF13385	Laminin_G_3	0.99

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	69.31 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	10.89 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	66.34 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	3.96 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.99 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	66.34 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	3.96 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.99 %
Unclassified	root	N/A	0.00 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001356\|JGI12269J14319_10275408	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	616	Open in IMG/M
3300005176\|Ga0066679_10979223	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	528	Open in IMG/M
3300005176\|Ga0066679_11027706	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	512	Open in IMG/M
3300005436\|Ga0070713_101117589	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	762	Open in IMG/M
3300005536\|Ga0070697_101389339	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	627	Open in IMG/M
3300005538\|Ga0070731_10331267	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1011	Open in IMG/M
3300005541\|Ga0070733_10148053	All Organisms → cellular organisms → Bacteria → Proteobacteria	1522	Open in IMG/M
3300005542\|Ga0070732_10458813	All Organisms → cellular organisms → Bacteria → Proteobacteria	771	Open in IMG/M
3300005553\|Ga0066695_10257831	All Organisms → cellular organisms → Bacteria → Proteobacteria	1101	Open in IMG/M
3300005557\|Ga0066704_10753442	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	609	Open in IMG/M
3300005561\|Ga0066699_10920176	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	609	Open in IMG/M
3300006577\|Ga0074050_11726700	All Organisms → cellular organisms → Bacteria → Proteobacteria	535	Open in IMG/M
3300006794\|Ga0066658_10376337	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	765	Open in IMG/M
3300006871\|Ga0075434_101760954	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	627	Open in IMG/M
3300006893\|Ga0073928_10000192	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	147264	Open in IMG/M
3300006893\|Ga0073928_10320984	All Organisms → cellular organisms → Bacteria → Proteobacteria	1156	Open in IMG/M
3300007255\|Ga0099791_10610536	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	534	Open in IMG/M
3300007821\|Ga0104323_122136	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1673	Open in IMG/M
3300009012\|Ga0066710_101322038	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1118	Open in IMG/M
3300009038\|Ga0099829_10051598	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	3050	Open in IMG/M
3300009038\|Ga0099829_11180212	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	634	Open in IMG/M
3300009088\|Ga0099830_10192582	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1592	Open in IMG/M
3300009088\|Ga0099830_11294697	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	606	Open in IMG/M
3300009089\|Ga0099828_10986754	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	751	Open in IMG/M
3300009089\|Ga0099828_11486060	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	597	Open in IMG/M
3300009090\|Ga0099827_10125207	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2075	Open in IMG/M
3300009090\|Ga0099827_10172445	All Organisms → cellular organisms → Bacteria → Proteobacteria	1783	Open in IMG/M
3300009090\|Ga0099827_11125879	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	682	Open in IMG/M
3300009090\|Ga0099827_11601919	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	567	Open in IMG/M
3300009137\|Ga0066709_102796799	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	647	Open in IMG/M
3300009444\|Ga0114945_10364813	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	858	Open in IMG/M
3300009777\|Ga0105164_10440774	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	646	Open in IMG/M
3300010379\|Ga0136449_103555662	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	592	Open in IMG/M
3300010391\|Ga0136847_11763287	All Organisms → cellular organisms → Bacteria → Proteobacteria	805	Open in IMG/M
3300011269\|Ga0137392_10591877	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	921	Open in IMG/M
3300011270\|Ga0137391_10367057	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1235	Open in IMG/M
3300011270\|Ga0137391_10505932	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1022	Open in IMG/M
3300011271\|Ga0137393_11557392	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	550	Open in IMG/M
3300011436\|Ga0137458_1266957	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	522	Open in IMG/M
3300011441\|Ga0137452_1093146	All Organisms → cellular organisms → Bacteria → Proteobacteria	987	Open in IMG/M
3300011444\|Ga0137463_1051218	All Organisms → cellular organisms → Bacteria → Proteobacteria	1537	Open in IMG/M
3300011444\|Ga0137463_1068667	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1327	Open in IMG/M
3300012035\|Ga0137445_1068680	All Organisms → cellular organisms → Bacteria → Proteobacteria	705	Open in IMG/M
3300012096\|Ga0137389_10362974	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1234	Open in IMG/M
3300012189\|Ga0137388_10429385	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1224	Open in IMG/M
3300012199\|Ga0137383_10816541	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	681	Open in IMG/M
3300012205\|Ga0137362_10229757	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1601	Open in IMG/M
3300012209\|Ga0137379_10066874	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3458	Open in IMG/M
3300012209\|Ga0137379_10757472	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	876	Open in IMG/M
3300012210\|Ga0137378_10254581	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1634	Open in IMG/M
3300012210\|Ga0137378_10454369	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1186	Open in IMG/M
3300012211\|Ga0137377_10547090	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1095	Open in IMG/M
3300012354\|Ga0137366_10190636	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1534	Open in IMG/M
3300012357\|Ga0137384_10621600	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	881	Open in IMG/M
3300012359\|Ga0137385_10924552	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	721	Open in IMG/M
3300012359\|Ga0137385_11084277	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	659	Open in IMG/M
3300012360\|Ga0137375_11433476	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	512	Open in IMG/M
3300012361\|Ga0137360_10277571	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1385	Open in IMG/M
3300012361\|Ga0137360_10756772	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	835	Open in IMG/M
3300012362\|Ga0137361_10208929	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1767	Open in IMG/M
3300012363\|Ga0137390_10701104	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	975	Open in IMG/M
3300012930\|Ga0137407_10670673	All Organisms → cellular organisms → Bacteria → Proteobacteria	976	Open in IMG/M
3300013503\|Ga0120127_10043822	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	878	Open in IMG/M
3300015374\|Ga0132255_105332688	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	544	Open in IMG/M
3300017823\|Ga0187818_10487191	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	552	Open in IMG/M
3300017934\|Ga0187803_10189968	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	809	Open in IMG/M
3300017943\|Ga0187819_10526198	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	673	Open in IMG/M
3300017975\|Ga0187782_11390293	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	552	Open in IMG/M
3300017975\|Ga0187782_11547285	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	523	Open in IMG/M
3300018064\|Ga0187773_10453175	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	755	Open in IMG/M
3300018084\|Ga0184629_10384797	All Organisms → cellular organisms → Bacteria → Proteobacteria	738	Open in IMG/M
3300018482\|Ga0066669_11664316	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	585	Open in IMG/M
3300019888\|Ga0193751_1041264	All Organisms → cellular organisms → Bacteria → Proteobacteria	2061	Open in IMG/M
3300021086\|Ga0179596_10534815	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	595	Open in IMG/M
3300021420\|Ga0210394_10019739	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	6279	Open in IMG/M
3300021420\|Ga0210394_10680318	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	902	Open in IMG/M
3300022557\|Ga0212123_10000111	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	274380	Open in IMG/M
3300026551\|Ga0209648_10779459	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	522	Open in IMG/M
3300027768\|Ga0209772_10288112	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	521	Open in IMG/M
3300027815\|Ga0209726_10181671	All Organisms → cellular organisms → Bacteria → Proteobacteria	1130	Open in IMG/M
3300027829\|Ga0209773_10184363	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	872	Open in IMG/M
3300027842\|Ga0209580_10451446	All Organisms → cellular organisms → Bacteria → Proteobacteria	641	Open in IMG/M
3300027862\|Ga0209701_10144745	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1455	Open in IMG/M
3300027867\|Ga0209167_10096594	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1507	Open in IMG/M
3300027875\|Ga0209283_10036158	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	3098	Open in IMG/M
3300027882\|Ga0209590_10273952	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1080	Open in IMG/M
3300027882\|Ga0209590_10810964	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	594	Open in IMG/M
3300027903\|Ga0209488_10278947	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1250	Open in IMG/M
3300027905\|Ga0209415_10062272	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	4568	Open in IMG/M
3300027905\|Ga0209415_10095267	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	3307	Open in IMG/M
3300031184\|Ga0307499_10077075	All Organisms → cellular organisms → Bacteria → Proteobacteria	872	Open in IMG/M
3300031754\|Ga0307475_10618091	All Organisms → cellular organisms → Bacteria → Proteobacteria	867	Open in IMG/M
3300031962\|Ga0307479_11265601	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	699	Open in IMG/M
3300031965\|Ga0326597_10007824	All Organisms → cellular organisms → Bacteria → Proteobacteria	14482	Open in IMG/M
3300031965\|Ga0326597_10059948	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	4740	Open in IMG/M
3300032160\|Ga0311301_11486940	All Organisms → cellular organisms → Bacteria → Proteobacteria	836	Open in IMG/M
3300032892\|Ga0335081_10180099	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2962	Open in IMG/M
3300032892\|Ga0335081_10196083	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2803	Open in IMG/M
3300032892\|Ga0335081_10610096	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1344	Open in IMG/M
3300033407\|Ga0214472_11198665	All Organisms → cellular organisms → Bacteria → Proteobacteria	662	Open in IMG/M
3300034178\|Ga0364934_0394261	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	524	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.02%
Host-Associated	Host-Associated	1.98%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	80.20%
Aquatic	Environmental → Aquatic	17.82%
Plants	Host-Associated → Plants	1.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	79.21%
Freshwater	Environmental → Aquatic → Freshwater	7.92%
Sediment	Environmental → Aquatic → Sediment	5.94%
Thermal Springs	Environmental → Aquatic → Thermal Springs	3.96%
Floodplain	Environmental → Terrestrial → Floodplain	0.99%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.99%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	71.29%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.94%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	5.94%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	4.95%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	3.96%
Loam	Environmental → Terrestrial → Soil → Loam	1.98%
Lake	Environmental → Aquatic → Freshwater → Lake	0.99%
Drinking Water	Environmental → Aquatic → Freshwater → Drinking Water	0.99%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.99%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.99%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.99%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	55.45%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	9.90%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.94%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	5.94%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.96%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.97%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	2.97%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.98%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.99%
Unchlorinated	Environmental → Aquatic → Freshwater → Drinking Water → Unchlorinated	0.99%
Contaminated	Environmental → Aquatic → Freshwater → Groundwater → Contaminated	0.99%
Unclassified	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified	0.99%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.99%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.99%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.99%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.99%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	39.60%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.94%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	4.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.95%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	4.95%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	4.95%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.96%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.97%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	2.97%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.97%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.97%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.98%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.98%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.98%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Sediment	0.99%
Wastewater	Environmental → Aquatic → Freshwater → Drinking Water → Unchlorinated → Wastewater	0.99%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater	0.99%
Thermal Springs	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Thermal Springs	0.99%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.99%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.99%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.99%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.99%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.99%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001356	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300006577	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHPA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007821	Permafrost core soil microbial communities from Svalbard, Norway - sample 2-10-2 Soapdenovo	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009444	Hot spring microbial communities from Beatty, Nevada to study Microbial Dark Matter (Phase II) - OV2 TP3	Environmental	Open in IMG/M
3300009777	Wastewater microbial communities from Netherlands to study Microbial Dark Matter (Phase II) - VDW unchlorinated drinking water	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010391	Freshwater sediment microbial communities from Lake Superior, USA - Station SU-17. Combined Assembly of Gp0155404, Gp0155335, Gp0155336, Gp0155336, Gp0155403, Gp0155406	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300011436	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT642_2	Environmental	Open in IMG/M
3300011441	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT513_2	Environmental	Open in IMG/M
3300011444	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT800_2	Environmental	Open in IMG/M
3300012035	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT338_2	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300013503	Permafrost microbial communities from Nunavut, Canada - A23_5cm_12M	Environmental	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017934	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_3	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018064	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MG	Environmental	Open in IMG/M
3300018084	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_b1	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019888	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027768	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027815	Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW46 contaminated, 5.4 m (SPAdes)	Environmental	Open in IMG/M
3300027829	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027842	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027867	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300031184	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 13_S	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300031965	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT100D185	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300033407	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT140D175	Environmental	Open in IMG/M
3300034178	Sediment microbial communities from East River floodplain, Colorado, United States - 27_j17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12269J14319_102754081	3300001356	Peatlands Soil	MEETAVTPGVDGAGGPPLGAPAATGSFADIVELWWADHFPGSPVAQVNSAWNHAFAAKEELKRRLSXLSGGVL*
Ga0066679_109792232	3300005176	Soil	MEETAAPGLPEAPQSLADIIERWWADHFPGSPVAQATSAWNHAFAAKEELKRRLEGVL*
Ga0066679_110277062	3300005176	Soil	MEETPTSDAAAPSPDAQPESLSLDSIVERWWEDHFPGSPVAQITAIWNHAFAAKEELKRRLKEVI*
Ga0070713_1011175891	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MEETAASSGVAPSADAPTEHQSLEDIIERWWADHFPGSPVAQVTQAWNHAFAAKEELKRRLVELARGVL*
Ga0070697_1013893392	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MEETAASGVAGPSPDTPTRHESPGDIVERWWEDHFPGSPVAQVTRAWNHAFAAKEELKRRLVDLIGGGH*
Ga0070731_103312673	3300005538	Surface Soil	MEETAAPGDAGARPTAASPADAVEHWWQDHFPGSPVAQVTSAWNHAFAAKE
Ga0070733_101480532	3300005541	Surface Soil	MEETIAPGVAGALPGVPAASGSPADIIERWWADHFPGSPVAQVAPAWNHAFAAKEELKRRLVNLSGGVL*
Ga0070732_104588132	3300005542	Surface Soil	MEETAASDVAGPPSGVPDASGSVEDIVERWWADHFPGSPVAQITSAWNHAFAAKEELKRRLVNLSAGVQ*
Ga0066695_102578312	3300005553	Soil	MEETAASGLPEASRSLEDIIERWWADHFPGSPVAQVTLAWNHAFAAKEELKRRLEGVL*
Ga0066704_107534422	3300005557	Soil	MEETAASGLPEASRSLEDIIERWWADHFPGSPVAQVTLAWNHAFAAKEDLKRRLE*
Ga0066699_109201762	3300005561	Soil	MEETAIPGVPEPSGSLEDIIERWWEDHFPGSPVAQVTSAWNHAFAAKEELKRRLEGVL*
Ga0074050_117267002	3300006577	Soil	MEEIADADVAEPSSDAPTEHESIEDLVERWWADNFPGSPVAQVTQAWNHAFAAKEELKRRLVNLVGGVL*
Ga0066658_103763372	3300006794	Soil	MEETAAPGVAAPLPDAPMTPRSLADIVELWWADHFPGSPVAQVTQAWNHAFAAKEELKRRLVNLLKGGI*
Ga0075434_1017609541	3300006871	Populus Rhizosphere	MKEITASGAEAPSPDVPAQSHSFEDIVERWWADHFPGSPVAQVTQAWNHAFAAKEELKRRLVDLVKGVL*
Ga0073928_1000019230	3300006893	Iron-Sulfur Acid Spring	MEEAAGPGVAGPPPNGTAAPGSLADIVERWWADHFPGSPVAQVTLAWNHAFAAKEDLKRRLANLSGGVL*
Ga0073928_103209842	3300006893	Iron-Sulfur Acid Spring	MEETAAPAVAEPPGVPNASGSLEDIVERWWADHFPGSPVAQVTSAWNHAFAAKEDLKRRLVNLSGGVL*
Ga0099791_106105361	3300007255	Vadose Zone Soil	MEETAASGVAASPPNVPDAPGSLEDIVERWWADHFPGSPVAQVTSAWNHAFAAKEELKRRLKGVL*
Ga0104323_1221361	3300007821	Soil	MEETAASGVAGPPPDAPAQRDSIEDIVERWWADHFPGSPVAQVTQAWNHAFAAKEELKRRLVNLVGGVL*
Ga0066710_1013220382	3300009012	Grasslands Soil	MEETAAPGVAAPPPDVPGSPEDIVERWWADHFPGSPVAQVTTAWNHAFAAKEELKRRLVNISGGVL
Ga0099829_100515983	3300009038	Vadose Zone Soil	MEETAAPGVAGSPGVPAASGSLDDIVERWWADHFPGSPVAQVTPAWNHAFAAKEELKRRLKGVL*
Ga0099829_111802122	3300009038	Vadose Zone Soil	MEETAASGAAEPSPDASTLPQSLDDLVERWWEDHFPGSPVAQVTQAWNHTFAAKEELKRRLVNLALGVL*
Ga0099830_101925821	3300009088	Vadose Zone Soil	MEETAAEGVAAPPPGAPTASGSLDDIVERWWADHFPGSPVAQVNSAWNHAFAAKEELKRRLKGVL*
Ga0099830_112946972	3300009088	Vadose Zone Soil	LEETAASGAAEPSPDAPTLPQSLDDLVERWWQDHFPGSPVAQVTQAWNHAFAAKEELKRRLVNLVGGVL*
Ga0099828_109867541	3300009089	Vadose Zone Soil	PPGVPALPGSLADIVEHWWADHFPGSPVAQVTQAWNHAFAAKQELKRRLANLVGGVL*
Ga0099828_114860602	3300009089	Vadose Zone Soil	MEETAASGAAEPTPDAATLPESLDDLVERWWQDHFPGSPVAQVTQAWNHTFAAKEELKRRLVNLALGVL*
Ga0099827_101252074	3300009090	Vadose Zone Soil	MEETAASGAAEPSPDAATLPQSLDDLVERWWQDHFPGSPVAQVTQAWNHSFAAKEELKRRLVNLALGVL*
Ga0099827_101724453	3300009090	Vadose Zone Soil	MEETAAAVTAPPPDAPTAPGSLDDIVERWWADHFPGSPVAQVTSVWNHAFAAKEELKRRLKGVL*
Ga0099827_111258792	3300009090	Vadose Zone Soil	MEETTEATTEETAASGVAGPSPDAPAQHESLDDIVESWWADHFPGSPVAQVTQAWNHAFAAKEELKRRLVNLVGGVL*
Ga0099827_116019192	3300009090	Vadose Zone Soil	MEETAASGVAGPSPDAPAEHESIEDLVERWWADHFPGSPVAQVTQAWNHAFAAKEELKRRLVNLVGGVL*
Ga0066709_1027967992	3300009137	Grasslands Soil	MEDTAATAVAAPPPDAPTAPGLLDDIVERWWADHFPGSPVAQVTSVWNHAVAAKEAPKRRRV
Ga0114945_103648132	3300009444	Thermal Springs	MKESVASGVAGTPPGDPDLPESPAEMVERWWTDHFPGSPVAQMTQAWNHAFAAKEELKRRLANLLGSV*
Ga0105164_104407741	3300009777	Wastewater	MEETAAPGVAESPPGVPSASGSLEDIVECWWADHFPGSPVARVTAVWNHAFAAKEELKRRLKGVL*
Ga0136449_1035556622	3300010379	Peatlands Soil	MEETAPSDVAGPPSGVPDAGSPEDIVERWWTDHFPGSPVAQVTSAWNHAFAAKEELKRRLVNLSGGGL*
Ga0136847_117632872	3300010391	Freshwater Sediment	MEETAASGVVGPSPDAPARREPTDDIVERWWADHFPGSPVAQVTQAWNHAFAAKEELKRRLTDLVEGVL*
Ga0137392_105918772	3300011269	Vadose Zone Soil	MEETAAPGIAGPPAGAPAASGSLDDIVERWWADHFPGSPVARVTPAWNHAFAAKEELKRRLKGVL*
Ga0137391_103670573	3300011270	Vadose Zone Soil	VAGPSPDAPAEHESIEDLVERWWADHFPGSPVAQVTQAWNHAFAAKEELKRRLKGVL*
Ga0137391_105059322	3300011270	Vadose Zone Soil	MEETAASGAAEPSPDASTLPQSLDDLVERWWQDHFPGSPVAQVTQAWNHTFAAKEELKRRLVNLALGVL*
Ga0137393_115573922	3300011271	Vadose Zone Soil	MEETAAAVTAPPPDAPTAPGSLDDIVERWWADHFPGSPVAQVTSAWNHAFAAKEDLKRRLVNLSGGVL*
Ga0137458_12669571	3300011436	Soil	MEETAASGAAAPSSDAPTEHESIEDLVEHWWGDHFPGSPVAQVTQAWNHAFAAKEELKRRLVDLARGVL*
Ga0137452_10931462	3300011441	Soil	MKETTATDVERPSSGAPSEPQSLEDIVERWWENHFPGSAVAQVTQAWNHAFAAKEELKRRLVNLVGGVL*
Ga0137463_10512183	3300011444	Soil	MKETTASGAEGPSPDAPVQSNSFEDIVERWWADHFPGSPVAQVTQAWNHAFAAKEELKRRLIDLARGVL*
Ga0137463_10686671	3300011444	Soil	MEETAASGAAGPSSAAPTEHESIEDLVERWWGDHFPGSPVAQVTQAWNHAFAAKEELKRRLVNLAKGVL*
Ga0137445_10686802	3300012035	Soil	MEETAASGVGGPSSDAPVHRGSLEDIVERGWEDHFPGSPVAQVTQAWNHAFAAKEELKRRLVNLVGGVL*
Ga0137389_103629741	3300012096	Vadose Zone Soil	MEETADGGVAAPPPDAPVHRDTLAAIVERWWEDHFPGSPVAQVTSAWNHAFAAKEELKRRLKGVL*
Ga0137388_104293852	3300012189	Vadose Zone Soil	MEETAASGAAEPSPDAATLPQSLDDLVERWWQDHFPGSPVAQVTQAWNHTFAAKEELKRRLVNLALGVL*
Ga0137383_108165412	3300012199	Vadose Zone Soil	MEETAAAVTAPPPDAPTAPGSLDDIVERWWADHFPGSPVAQMTSVWNHAFAAKEELKRRLKGVL*
Ga0137362_102297573	3300012205	Vadose Zone Soil	MEETAAAVTAPPPDAPTAPGSLDDIVERWWADHFPGSPVAQITSVWNHAFAAKEELKRRLKGVL*
Ga0137379_100668746	3300012209	Vadose Zone Soil	MEETVAPGVAAPPPAAPGSPEDIVERWWADHFPGSPVAQVTSVWNHAFAAKEELKRRLKENL*
Ga0137379_107574723	3300012209	Vadose Zone Soil	MEETAAAVTAPPPDTPTAPGSLDDIVERWWVDHFPGSPVAQVNSAWNHAFAAKEELKRRLVNLAGGVL*
Ga0137378_102545812	3300012210	Vadose Zone Soil	MEETAAPGVAGPPPAGPGSLVDIVERWWADHFPGSPVAQVTAAWNHAFAAKEELKRRLKEIL*
Ga0137378_104543693	3300012210	Vadose Zone Soil	MDETAAAAVAAPPPDAPTASGSLDDIVERWWADHFPGSPVAQVTSAWNHAFAAKEELKRRLVNLSGGVL*
Ga0137377_105470902	3300012211	Vadose Zone Soil	MEETAAAVTAPPPDAPTVPGSLDDIVERWWADHFPGSPVAQMTSVWNHAFAAKEELKRRLKGVL*
Ga0137366_101906361	3300012354	Vadose Zone Soil	PGVAGPPPAGPGSLVDIVERWWADHFPESPVAQVTAAWNHAFAAKEELKRRLKEIL*
Ga0137384_106216002	3300012357	Vadose Zone Soil	MEETAAAAVTAPPPDAPTASGSLDDIVERWWADHFPGSPVAQVTSAWNHAFAAKEELKRRLVNLSGGVL*
Ga0137385_109245521	3300012359	Vadose Zone Soil	MEETAAAVTAPPPDAPTAPGSLDDIVERWWVDHFPGSPVAQVNSAWNHAFAAKEELKRRLEGVL*
Ga0137385_110842772	3300012359	Vadose Zone Soil	MEETVAPGVAGPQPAAPGSLDDIVERWWADHFPGSPVAQVTTAWNHAFAAKEELKRRLKENL*
Ga0137375_114334761	3300012360	Vadose Zone Soil	MKETTPSGAEAPSPDVRAQSASLEDIVERWWEDHFPGSPVAQVTQAWNHAFAAKEELKRRLVDLVKGVL*
Ga0137360_102775713	3300012361	Vadose Zone Soil	MEETAASGLPEASRSLEDIVERWWADHFPGSPVAQVTLAWNHAFAAKEELKRRLKGVL*
Ga0137360_107567722	3300012361	Vadose Zone Soil	MEETAASGLPEASRSLEDIIERWWADHFPGSPVAQVTPAWNHAFAAKEELKRRLEGVL*
Ga0137361_102089293	3300012362	Vadose Zone Soil	MEETAAAVTAPPPDAPTAPGSLDDIVERCWADHFPGSPVAQVTSVWNHAFAAKEELKRRLKGVL*
Ga0137390_107011041	3300012363	Vadose Zone Soil	EETAASGAAEPSPDASTLPQSLDDLVERWWQDHFPGSPVAQVTQAWNHSFAAKEELKRRLVNLALGVL*
Ga0137407_106706732	3300012930	Vadose Zone Soil	MEETAAAGVAASPPNVPDAPGSLGDIVERWWADHFPGSPVAQVPLAWNHPFAAKEELKRRLEGVL*
Ga0120127_100438222	3300013503	Permafrost	MEETTDSGVAGPSCDAPTEHESIEDLVERWWEDHFPGSPVAQVTQAWNHAFAAKEELKRRLVNLVGGGL*
Ga0132255_1053326882	3300015374	Arabidopsis Rhizosphere	MEETAASGGAGPSPDAPTEHQSPSDQSLQDIIERWWADHFPGSPVAQVTQAWNHAFAAKEELKRRLVDLVKGVL*
Ga0187818_104871912	3300017823	Freshwater Sediment	MEETAASDVAAPPPGDPDAPGSLEDVVERWWTDHFPGSPVAQVTSAWNHAFAAKEELKRRLKGVI
Ga0187803_101899682	3300017934	Freshwater Sediment	MEETAASDVAAPPPGDPGASGSLEDIVERWWTDHFPGSPVAQVTSAWNHAFAAKEELKRRLKGVI
Ga0187819_105261982	3300017943	Freshwater Sediment	MDETAASDVAAPPPGDPGASGSLEDIVERWWTDHFPGSPVAQVTSAWNHAFAAKEELKRRLKGVI
Ga0187782_113902932	3300017975	Tropical Peatland	MEEAAVSTVAAPPPVAPGSLADIVERWWADHFPGSPVAQVTAAWNHAFAAKEELKRRLANLSGGV
Ga0187782_115472852	3300017975	Tropical Peatland	MEETVIPGTPGPPPSTLGASGAFEEIVDRWWADHFPGSPVAQVTAAWNHAFAAKEELKRRLVTALKGE
Ga0187773_104531752	3300018064	Tropical Peatland	MDDPTAAPAAAPLSAAEQAAPGSLDDIVERWWNDHFPGSPVAQLTAAWNHAFAAKDELKRRLKEVL
Ga0184629_103847972	3300018084	Groundwater Sediment	MKETAASEVAEPSPDVPTEHESIEDLVERWWADHFPGSPVAQVTQAWNHAFAAKEELKRRLVNLVGGVL
Ga0066669_116643162	3300018482	Grasslands Soil	MEETAAPGAAVPAASGSPEDTVERWWADHFPGSPVAQVTSAWNHAFAAKEELKRRLVHLSGGVL
Ga0193751_10412644	3300019888	Soil	MEETAASDVAEPSSDAPIHDESIEDLVERWWEDHFPGSPVAQVTQAWNHAFAAKEELKRRLVNLVGGVL
Ga0179596_105348152	3300021086	Vadose Zone Soil	MEETAAPGVAGSPGVPAASGSLDHIVERWWADHFPGSPVAQVTPAWNHAFAAKEELKRRLKGVL
Ga0210394_100197393	3300021420	Soil	MEETAGLDVARPPPSVSVASGRFEDLVERWWTDHFPGSPVAQVTLAWNHAFAAKEELKRRLVNLSGGVL
Ga0210394_106803183	3300021420	Soil	MEETAGLDVAGPPPSLSAAPGPLEDLVERRWADHFPGSPVAQVTSAWNHAFAAKEELKRRLVNLSGGVL
Ga0212123_10000111243	3300022557	Iron-Sulfur Acid Spring	MEEAAGPGVAGPPPNGTAAPGSLADIVERWWADHFPGSPVAQVTLAWNHAFAAKEDLKRRLANLSGGVL
Ga0209648_107794592	3300026551	Grasslands Soil	MEETAAPGIAGPPAGAPAASGSLDDIVERWWADHFPGSPVARVTPAWNHAFAAKEELKRRLKGVL
Ga0209772_102881122	3300027768	Bog Forest Soil	MEETVAPGVAEPPPGAPAASGPLADIVERWWADHFPGSPVAQVTPAWNHAFAAKEELKRRLVNLSGGV
Ga0209726_101816712	3300027815	Groundwater	MEESTVPADAGASSGAAAPPTPILDLVEAWWADHFPGSPVAQVTQAWNHAFAAKEELKRRLIHLIEGAA
Ga0209773_101843632	3300027829	Bog Forest Soil	MEETVAPGAAGPPPGAPVASGPLADIVERWWADHFPGSPVAQVTPAWNHAFAAKEELKRRLVNLSGGV
Ga0209580_104514462	3300027842	Surface Soil	MEETAASDVAGPPSGVPDASGSVEDIVERWWADHFPGSPVAQITSAWNHAFAAKEELKRRLVNFSGGVL
Ga0209701_101447454	3300027862	Vadose Zone Soil	VAGSPGVPAASGSLDDIVERWWADHFPGSPVAQVTPAWNHAFAAKEELKRRLKGVL
Ga0209167_100965942	3300027867	Surface Soil	MEETIAPGVAGALPGVPAASGSPADIIERWWADHFPGSPVAQVAPAWNHAFAAKEELKRRLVNLSGGVL
Ga0209283_100361584	3300027875	Vadose Zone Soil	MEETAAPGVAGSPGVPAASGSLDDIVERWWADHFPGSPVAQVTPAWNHAFAAKEELKRRLKGVL
Ga0209590_102739523	3300027882	Vadose Zone Soil	MEETAASGAAEPSPDAPTLPQSLDDLVERWWQDHFPGSPVAQVTQAWNHSFAAKEELKRRLVNLALGVL
Ga0209590_108109642	3300027882	Vadose Zone Soil	MEETAAAVTAPPPDAPTAPGSLDDIVERWWADHFPGSPVAQMTSVWNHAFAAKEELKRRLKGVL
Ga0209488_102789471	3300027903	Vadose Zone Soil	MEETAAAVTAPPPDAPTAPGSLDDIVERWWADHFPGSPVAQITSVWNHAFAAKEELKRRLKGVL
Ga0209415_100622725	3300027905	Peatlands Soil	MEETAVTPGVDGAGGPPLGAPAATGSFADIVELWWADHFPGSPVAQVNSAWNHAFAAKEELKRRLSNLSGGVL
Ga0209415_100952672	3300027905	Peatlands Soil	MEETAPSDVAGPPSGVPDAGSPEDIVERWWTDHFPGSPVAQVTSAWNHAFAAKEELKRRLVNLSGGGL
Ga0307499_100770752	3300031184	Soil	MEDTAASGVAGSSPDVPIQHEAPEDLVERWWADHFPGSPVAQVTQAWNHAFAAKEELKRRLVNLAKGVL
Ga0307475_106180912	3300031754	Hardwood Forest Soil	MEETAVAGVAEPSSNRPAERQPLLDLVELWWADHFPGSPVAQVTPAWNHAFAAKEELKRLLKEDK
Ga0307479_112656012	3300031962	Hardwood Forest Soil	MEEPANDAPAPRPSPGDIVETWWADHFPGSPLAQVTQAWNHAFAAKEELKRRLTDLISGE
Ga0326597_1000782419	3300031965	Soil	MEDTAAPGVAAPQTGVPDVPGSPAEIVERWWADNFPGSPVAQMTQAWNHAFAAKEELKRHLVNFFGRA
Ga0326597_100599486	3300031965	Soil	MKETPASGVKRPSSGVPSEPESLEDIVERWWENHFPGSPVAQVTQAWNHAFAAKEELKRRLVDLARGVL
Ga0311301_114869402	3300032160	Peatlands Soil	MEETTAFGAEAPSPDAPAQPESLEAIVERWWADHFPGSPVAQVTQAWNHAFAAKEELKRRLVNLTGGVL
Ga0335081_101800994	3300032892	Soil	MDDPTAAAAAAPPSAGEQAAPGSLDDIVERWWNDHFPGSPVAQLTAAWNHAFAAKDELKRRLKEVF
Ga0335081_101960833	3300032892	Soil	MEATAVPDADEPSPDSPVMPQSLGELVEQWWADHFPGSPVAQATGAWNHALAAKEALKRRLANLAPGAH
Ga0335081_106100963	3300032892	Soil	MDDPTAAPAAAPLSAGERAAPGSLDDIVERWWNDHFPGSPVAQLTAAWNHAFAAKDELKRRLKEVL
Ga0214472_111986652	3300033407	Soil	MEETAASGAAGPSPDAPAQRESIVDIVEHWWADHFPGSPVAQVTQAWNHAFAAKEDLKRRLVNLVGGGL
Ga0364934_0394261_134_343	3300034178	Sediment	MEETAASGVEGPSSAAPTEHQSLDVVVERWWEDHFPGSPVAQVTQAWNHAFAAKEELKRRLVDLVGGVL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F103207

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences