NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F103152

Metagenome / Metatranscriptome Family F103152

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F103152
Family Type Metagenome / Metatranscriptome
Number of Sequences 101
Average Sequence Length 54 residues
Representative Sequence MTPVFRSVGRGPGGRRYLSSERELRLGVCFWFRLFNVVPETTARFSYLDDR
Number of Associated Samples 85
Number of Associated Scaffolds 101

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 83.17 %
% of genes near scaffold ends (potentially truncated) 99.01 %
% of genes from short scaffolds (< 2000 bps) 94.06 %
Associated GOLD sequencing projects 83
AlphaFold2 3D model prediction Yes
3D model pTM-score0.29

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (76.238 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(27.723 % of family members)
Environment Ontology (ENVO) Unclassified
(18.812 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(61.386 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 31.65%    β-sheet: 0.00%    Coil/Unstructured: 68.35%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.29
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 101 Family Scaffolds
PF16640Big_3_5 1.98
PF07927HicA_toxin 1.98
PF11249DUF3047 1.98
PF13191AAA_16 0.99
PF12623Hen1_L 0.99
PF13561adh_short_C2 0.99
PF13565HTH_32 0.99
PF04909Amidohydro_2 0.99
PF14464Prok-JAB 0.99
PF08002DUF1697 0.99
PF01569PAP2 0.99
PF00440TetR_N 0.99

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 101 Family Scaffolds
COG1724Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase familyGeneral function prediction only [R] 1.98
COG3797Uncharacterized conserved protein, DUF1697 familyFunction unknown [S] 0.99


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A76.24 %
All OrganismsrootAll Organisms23.76 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300005538|Ga0070731_10864590Not Available599Open in IMG/M
3300005602|Ga0070762_10200202All Organisms → cellular organisms → Bacteria → Proteobacteria1221Open in IMG/M
3300005610|Ga0070763_10910645Not Available524Open in IMG/M
3300005712|Ga0070764_10548897Not Available700Open in IMG/M
3300005712|Ga0070764_11113299All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium501Open in IMG/M
3300006052|Ga0075029_101320878Not Available507Open in IMG/M
3300006059|Ga0075017_101296526Not Available571Open in IMG/M
3300006059|Ga0075017_101402265Not Available549Open in IMG/M
3300006059|Ga0075017_101649011Not Available506Open in IMG/M
3300006102|Ga0075015_100764238Not Available578Open in IMG/M
3300006122|Ga0007837_1091178Not Available514Open in IMG/M
3300006162|Ga0075030_100225470All Organisms → cellular organisms → Bacteria1505Open in IMG/M
3300006638|Ga0075522_10257135All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium860Open in IMG/M
3300009672|Ga0116215_1018255All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia3291Open in IMG/M
3300009672|Ga0116215_1041302Not Available2107Open in IMG/M
3300009839|Ga0116223_10653488Not Available605Open in IMG/M
3300010371|Ga0134125_11406473Not Available760Open in IMG/M
3300010379|Ga0136449_100247572All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium3316Open in IMG/M
3300010379|Ga0136449_103005221Not Available658Open in IMG/M
3300011066|Ga0138524_1053972Not Available508Open in IMG/M
3300014492|Ga0182013_10575383All Organisms → cellular organisms → Bacteria577Open in IMG/M
3300014499|Ga0182012_10592594Not Available713Open in IMG/M
3300014501|Ga0182024_11550643Not Available754Open in IMG/M
3300014655|Ga0181516_10613697Not Available561Open in IMG/M
3300016371|Ga0182034_11456936Not Available599Open in IMG/M
3300017955|Ga0187817_10803261Not Available601Open in IMG/M
3300017974|Ga0187777_11214028Not Available552Open in IMG/M
3300018013|Ga0187873_1206738Not Available734Open in IMG/M
3300018085|Ga0187772_11108150Not Available581Open in IMG/M
3300019156|Ga0184576_108618Not Available527Open in IMG/M
3300019260|Ga0181506_1435991All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium605Open in IMG/M
3300019275|Ga0187798_1387439Not Available542Open in IMG/M
3300021406|Ga0210386_10465659All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia1092Open in IMG/M
3300022509|Ga0242649_1014684Not Available876Open in IMG/M
3300022509|Ga0242649_1050239Not Available585Open in IMG/M
3300022509|Ga0242649_1078575Not Available505Open in IMG/M
3300022510|Ga0242652_1035384Not Available590Open in IMG/M
3300022512|Ga0242676_1032680Not Available592Open in IMG/M
3300022513|Ga0242667_1016072All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium ADurb.Bin207741Open in IMG/M
3300022523|Ga0242663_1095206Not Available587Open in IMG/M
3300022529|Ga0242668_1076504Not Available644Open in IMG/M
3300022530|Ga0242658_1192365Not Available550Open in IMG/M
3300022530|Ga0242658_1199270Not Available544Open in IMG/M
3300022532|Ga0242655_10210632Not Available599Open in IMG/M
3300022718|Ga0242675_1135666Not Available504Open in IMG/M
3300022718|Ga0242675_1137301Not Available502Open in IMG/M
3300022721|Ga0242666_1210810Not Available500Open in IMG/M
3300022840|Ga0224549_1063133Not Available507Open in IMG/M
3300023536|Ga0247552_100622Not Available911Open in IMG/M
3300023544|Ga0247542_104459Not Available570Open in IMG/M
3300025703|Ga0208357_1175600Not Available587Open in IMG/M
3300026887|Ga0207805_1015034Not Available806Open in IMG/M
3300027698|Ga0209446_1091103Not Available781Open in IMG/M
3300027853|Ga0209274_10231110Not Available945Open in IMG/M
3300027905|Ga0209415_10497136All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria941Open in IMG/M
3300027911|Ga0209698_10243518All Organisms → cellular organisms → Bacteria1439Open in IMG/M
3300028781|Ga0302223_10304079Not Available528Open in IMG/M
3300028808|Ga0302228_10160031Not Available1035Open in IMG/M
3300028877|Ga0302235_10078043Not Available1533Open in IMG/M
3300029636|Ga0222749_10328819Not Available796Open in IMG/M
3300030580|Ga0311355_11326102All Organisms → cellular organisms → Bacteria629Open in IMG/M
3300030693|Ga0302313_10313545Not Available626Open in IMG/M
3300030707|Ga0310038_10108403All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1438Open in IMG/M
3300030716|Ga0307920_119448Not Available644Open in IMG/M
3300030741|Ga0265459_13652565Not Available540Open in IMG/M
3300030760|Ga0265762_1070991Not Available731Open in IMG/M
3300030760|Ga0265762_1138663Not Available570Open in IMG/M
3300030813|Ga0265750_1070655Not Available564Open in IMG/M
3300030834|Ga0265738_102915Not Available672Open in IMG/M
3300030906|Ga0302314_10609535Not Available1139Open in IMG/M
3300031016|Ga0265732_104295Not Available545Open in IMG/M
3300031022|Ga0138301_1194495Not Available655Open in IMG/M
3300031042|Ga0265749_101871All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Magnetospirillum680Open in IMG/M
3300031128|Ga0170823_11803126Not Available566Open in IMG/M
3300031234|Ga0302325_10173248All Organisms → cellular organisms → Bacteria3792Open in IMG/M
3300031234|Ga0302325_12806939Not Available570Open in IMG/M
3300031236|Ga0302324_100037644All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria8978Open in IMG/M
3300031525|Ga0302326_10349612All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2326Open in IMG/M
3300031549|Ga0318571_10228434All Organisms → cellular organisms → Bacteria → Terrabacteria group → Candidatus Dormibacteraeota → unclassified Candidatus Dormibacteraeota → Candidatus Dormibacteraeota bacterium676Open in IMG/M
3300031680|Ga0318574_10319835All Organisms → cellular organisms → Bacteria → Terrabacteria group → Candidatus Dormibacteraeota → unclassified Candidatus Dormibacteraeota → Candidatus Dormibacteraeota bacterium903Open in IMG/M
3300031682|Ga0318560_10591704Not Available601Open in IMG/M
3300031708|Ga0310686_102474945Not Available537Open in IMG/M
3300031708|Ga0310686_107567007Not Available954Open in IMG/M
3300031744|Ga0306918_10604924All Organisms → cellular organisms → Bacteria859Open in IMG/M
3300031751|Ga0318494_10934214Not Available509Open in IMG/M
3300031769|Ga0318526_10457843Not Available521Open in IMG/M
3300031779|Ga0318566_10108479All Organisms → cellular organisms → Bacteria1366Open in IMG/M
3300031795|Ga0318557_10516627Not Available548Open in IMG/M
3300031808|Ga0316037_117803Not Available529Open in IMG/M
3300031826|Ga0316031_110180Not Available585Open in IMG/M
3300031835|Ga0318517_10368812Not Available649Open in IMG/M
3300031846|Ga0318512_10125802All Organisms → cellular organisms → Bacteria1222Open in IMG/M
3300031868|Ga0316038_113340Not Available571Open in IMG/M
3300032052|Ga0318506_10377651All Organisms → cellular organisms → Bacteria → Terrabacteria group → Candidatus Dormibacteraeota → unclassified Candidatus Dormibacteraeota → Candidatus Dormibacteraeota bacterium629Open in IMG/M
3300032072|Ga0326631_117330Not Available521Open in IMG/M
3300032515|Ga0348332_10678204Not Available707Open in IMG/M
3300032515|Ga0348332_10989956Not Available526Open in IMG/M
3300032515|Ga0348332_11270022Not Available968Open in IMG/M
3300032515|Ga0348332_11716494Not Available527Open in IMG/M
3300032515|Ga0348332_14769030Not Available569Open in IMG/M
3300034282|Ga0370492_0189925Not Available838Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil27.72%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil14.85%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa9.90%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil7.92%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds6.93%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil4.95%
Plant LitterEnvironmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter4.95%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland1.98%
Arctic Peat SoilEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil1.98%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil1.98%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland1.98%
BogEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Bog1.98%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater0.99%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil0.99%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog0.99%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment0.99%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil0.99%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil0.99%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil0.99%
Untreated Peat SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil0.99%
PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland0.99%
PermafrostEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost0.99%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil0.99%
SoilEnvironmental → Terrestrial → Soil → Clay → Unclassified → Soil0.99%
SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Soil0.99%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300005538Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1EnvironmentalOpen in IMG/M
3300005602Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2EnvironmentalOpen in IMG/M
3300005610Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3EnvironmentalOpen in IMG/M
3300005712Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4EnvironmentalOpen in IMG/M
3300006052Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013EnvironmentalOpen in IMG/M
3300006059Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012EnvironmentalOpen in IMG/M
3300006102Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013EnvironmentalOpen in IMG/M
3300006122Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE31Jul07EnvironmentalOpen in IMG/M
3300006162Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012EnvironmentalOpen in IMG/M
3300006638Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-AEnvironmentalOpen in IMG/M
3300009672Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaGEnvironmentalOpen in IMG/M
3300009839Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaGEnvironmentalOpen in IMG/M
3300010371Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1EnvironmentalOpen in IMG/M
3300010379Sb_50d combined assemblyEnvironmentalOpen in IMG/M
3300011066Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 3 (Metagenome Metatranscriptome) (version 2)EnvironmentalOpen in IMG/M
3300014492Permafrost microbial communities from Stordalen Mire, Sweden - 612S2M metaGEnvironmentalOpen in IMG/M
3300014499Permafrost microbial communities from Stordalen Mire, Sweden - 612S2S metaGEnvironmentalOpen in IMG/M
3300014501Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300014655Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_10_metaGEnvironmentalOpen in IMG/M
3300016371Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172EnvironmentalOpen in IMG/M
3300017955Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2EnvironmentalOpen in IMG/M
3300017974Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MGEnvironmentalOpen in IMG/M
3300018013Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_100EnvironmentalOpen in IMG/M
3300018085Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MGEnvironmentalOpen in IMG/M
3300019156Spruce litter microbial communities from Bohemian Forest, Czech Republic ? CLE3 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019260Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019275Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_20_MT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300021406Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-OEnvironmentalOpen in IMG/M
3300022509Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-27-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022510Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-14-M (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022512Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022513Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022523Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022529Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022530Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022532Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-M (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022718Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022721Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022840Peat soil microbial communities from Stordalen Mire, Sweden - 717 P3 1-5EnvironmentalOpen in IMG/M
3300023536Metatranscriptome of spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZE4 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300023544Metatranscriptome of soil microbial communities from Bohemian Forest, Czech Republic ? CSU4 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300025703Arctic peat soil from Barrow, Alaska - NGEE Surface sample F52-2 deep-092012 (SPAdes)EnvironmentalOpen in IMG/M
3300026887Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 49 (SPAdes)EnvironmentalOpen in IMG/M
3300027698Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM2 (SPAdes)EnvironmentalOpen in IMG/M
3300027853Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)EnvironmentalOpen in IMG/M
3300027905Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)EnvironmentalOpen in IMG/M
3300027911Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)EnvironmentalOpen in IMG/M
3300028781Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_3EnvironmentalOpen in IMG/M
3300028808Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_2EnvironmentalOpen in IMG/M
3300028877Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_3EnvironmentalOpen in IMG/M
3300029636Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300030580II_Palsa_N1 coassemblyEnvironmentalOpen in IMG/M
3300030693Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N2_2EnvironmentalOpen in IMG/M
3300030707Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG (v2)EnvironmentalOpen in IMG/M
3300030716Metatranscriptome of soil microbial communities from Risofladan, Vaasa, Finland - OX-2 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300030741Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada ANR Co-assemblyEnvironmentalOpen in IMG/M
3300030760Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI4 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300030813Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300030834Metatranscriptome of plant litter microbial communities from Maridalen valley, Oslo, Norway - NLA5 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300030906Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N2_3EnvironmentalOpen in IMG/M
3300031016Metatranscriptome of plant litter microbial communities from Maridalen valley, Oslo, Norway - NLE4 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031022Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A3_MS_spring Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2)EnvironmentalOpen in IMG/M
3300031042Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSU6 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031128Oak Summer Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031234Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2EnvironmentalOpen in IMG/M
3300031236Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1EnvironmentalOpen in IMG/M
3300031525Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3EnvironmentalOpen in IMG/M
3300031549Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24EnvironmentalOpen in IMG/M
3300031680Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22EnvironmentalOpen in IMG/M
3300031682Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22EnvironmentalOpen in IMG/M
3300031708FICUS49499 Metagenome Czech Republic combined assemblyEnvironmentalOpen in IMG/M
3300031744Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)EnvironmentalOpen in IMG/M
3300031751Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24EnvironmentalOpen in IMG/M
3300031769Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24EnvironmentalOpen in IMG/M
3300031779Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22EnvironmentalOpen in IMG/M
3300031795Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19EnvironmentalOpen in IMG/M
3300031808Spruce litter microbial communities from Bohemian Forest, Czech Republic ? CLE3 metaT (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300031826Spruce litter microbial communities from Bohemian Forest, Czech Republic ? CLI3 metaT (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300031835Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21EnvironmentalOpen in IMG/M
3300031846Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19EnvironmentalOpen in IMG/M
3300031868Spruce litter microbial communities from Bohemian Forest, Czech Republic ? CLA1 metaT (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300032052Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19EnvironmentalOpen in IMG/M
3300032072Soil microbial communities from Bohemian Forest, Czech Republic ? CSI2 metaT (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300032515FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)EnvironmentalOpen in IMG/M
3300034282Peat soil microbial communities from wetlands in Alaska, United States - Eight_mile_03D_16EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0070731_1086459033300005538Surface SoilMTPVNQPARLRLGGRRYLLSSVRELRLGVCFVFRLFYVAPETTARFSQLDDRSR
Ga0070762_1020020213300005602SoilMTPVFRSVGRGPGGRRYLSSERELRLGVCFWFRLFNVVPETTARFSYLDDR
Ga0070763_1091064513300005610SoilVLPLSKPYLMASTFRSIGLRPGERRYLGSERELRLGVCFWFRLFNVAPETTARFSY
Ga0070764_1054889713300005712SoilMTPKIRSVGRGPAGRRYLSSERELWLLGVCFWFRLFNVAPETTARFSYLDDRSRSQSPPCLG
Ga0070764_1111329913300005712SoilMTPVYQPVGLRLDGRRYCLGSERELRLGVYFWFRLFNVAPETTARF
Ga0075029_10132087813300006052WatershedsMMLKFRPVGPRSGEHRYLRSERELRLGVYFWFRLFNVAPETTARFSY
Ga0075017_10129652613300006059WatershedsMTPRIRSVGRGPAGRRYLSSDRELRLGVCFWFRLFNVVPETTAR
Ga0075017_10140226513300006059WatershedsMSPAFSWCEALGKPYCMTPKIRSVGQGPAGRRYLSSDRELRLGVCFWFRLFNVAPETTARFSYLDDRSRS
Ga0075017_10164901113300006059WatershedsMTPKIRSVGLGPAGRRYLSSDRELRLGVCFWFRLFNVAPETTARFSYLDDRSRSQ
Ga0075015_10076423813300006102WatershedsMMPKFRPVGLRPVGHRYRLGSERELRLGVCYWFRLFNVVPETTAR
Ga0007837_109117823300006122FreshwaterMASIFRPEGLRPDERHCLSSECELRLGVYFCFRLFNVVPETTARFSHLN
Ga0075030_10022547053300006162WatershedsMTPKTRSVGQRPVGRRYLSSERERWLRLGVCFWFRLFNV
Ga0075522_1025713533300006638Arctic Peat SoilVFSWCEALSKPYLMASTFRSIGLRPGERRYLGSERELRLGVCFWFRLFNVAPETTARFSYIDD
Ga0116215_101825513300009672Peatlands SoilMTPEIRSVGRKPVGRRYLSSDRELRLGVCFWFRLFNVVPETTA
Ga0116215_104130223300009672Peatlands SoilMSSAFSWCEALSKPYCMTPKIRSVGQGPAGRRYLSSDRELRLGVCFWFRLFNVAPETTARFSYLDDRSR
Ga0116223_1065348813300009839Peatlands SoilMTPKIRSVGRGPAGRRYLSSDRELRLGVCFWFRLFNVVPETTARFSYLDDRSRNQSPPCL
Ga0134125_1140647313300010371Terrestrial SoilMTPVYRSVGRGPGGRGYLSSQRELRLGVCFWFRLFNVAPETTARFSYL
Ga0136449_10024757243300010379Peatlands SoilVFSWYDALSKPYYMTPKIRSVGLGPAGRRYLSSDRELRLGVCFWFRLFNVAPETTARFSYLDD
Ga0136449_10300522113300010379Peatlands SoilMTPRIRSVGQGPAGRRYLSSDRELRLGVCFWFRLFNVVPETTARFSYLDD
Ga0138524_105397213300011066Peatlands SoilVGQGPGGRRYLSSERELRLGVCFCSRLFYVAPGTTARFSYLDNLSRNHSPP
Ga0182013_1057538323300014492BogMAPTYRPIGLRSGGRRYLSSERYERLLGVCFWFRLFNVVPETTARFS
Ga0182012_1059259413300014499BogMAPTYRPIGLRSGGRRYLSSERYERLLGVCFWFRLFNVVPETTARFSYINDRSRNQSPPCGLQLA
Ga0182024_1155064323300014501PermafrostMASTFRSIGLRPGERRYLSSERELRLGVCFWFRLFNVVPETTA
Ga0181516_1061369713300014655BogMTPTFRSIGLRPGGRRYLSSERKLRLGVCFWFRLFNVAPETTARFSYINDRSRSQSPPCGFS
Ga0182034_1145693613300016371SoilMTPGIRSVGRGPGGRGYLSSQRELRLGVCFCFRLFNVAPETTARFSYLDDRS
Ga0187817_1080326123300017955Freshwater SedimentMTPELRSVGRGPGGRLYLSSERELWLLGVCFWFRLFNVDPETTARFSYLDDRSRNQSPPCLGCRPTWPTDPFY
Ga0187777_1121402813300017974Tropical PeatlandMTPELRSVGRGPGGRRYLSSEPELWLLGVCFWFRLFNVDPETTARFSYLDDRSRN
Ga0187873_120673813300018013PeatlandMTPEIRSVGRGPVGRRYLSSDRELRLGVCFWFRLFNV
Ga0187772_1110815013300018085Tropical PeatlandMTPELRSVGRGPGGRRYLSSERELSLLGVCFWFRLFNVDPETTARFSYLDDRSRN
Ga0184576_10861813300019156SoilMAPTFRSAGLRPGGRRYLSSDCELRLGIYFWFRLFNVVPETTARFSYLDERNR
Ga0181506_143599113300019260PeatlandVSSAFSWGEALSKPYLMAPTFRSIGLRPGGRRYLSSERELRLGVCFWFRLFYVVPETTARFSYI
Ga0187798_138743913300019275PeatlandMTPDYRSVRRGPGGRRYLSSERERRLLGVCFWFRLFNVAPETTARFSYLDDRSRN
Ga0210386_1046565923300021406SoilMMPDIRSVGPGPGGHGYLSSQRELRLGVYFWFRLFNVAPETTARFSYLDDRSR
Ga0242649_101468413300022509SoilMTPVYQPVGLRLDGRRYCLGSERELRLGVYFWFRLFNVAPETTARFSNLDYRSR
Ga0242649_105023913300022509SoilMTPDNRSVGRGPGGRRYLSSERELRLGVCFWFRLFNVAPETTARFSY
Ga0242649_107857513300022509SoilMTPKTRSVGRRPAGRRYLSSEAELSLLGVCFWFRLFNVAPETTARFSYLDDRSRNQSPPCLGC
Ga0242652_103538413300022510SoilMTPVFRSVGRGPGGRRYLSSERELRLGVCFWFRLFNVAPETTARFSYLDDRSRNQSPPFLGC
Ga0242676_103268013300022512SoilMASTFRSAGLRPGERRYLSSECELRLGICFWFRLFNVVPETTARFSYLNERN
Ga0242667_101607213300022513SoilMTPGIRPVGLRPVRRRYLLGSDCELRLGVCFGFRLFNVAPDTTARFSHLDDR
Ga0242663_109520613300022523SoilVGLRPDERRSFLGCERELRLGVYFWFRLFNVVPETTAR
Ga0242668_107650423300022529SoilMTPVNRSVRRGPGGRRYLSSERERRLLGVCFWFRLFNVAPETTARFSYLDDRSRSQ
Ga0242658_119236513300022530SoilVISWSEPLSKPYLMAPTFRSIGLRPGGRRYLSSERELRLGVCFWFRLFNV
Ga0242658_119927013300022530SoilMIRSVGRGPAGRRYLSSDRELRLGVCFWFRLFNVVPETTAR
Ga0242655_1021063213300022532SoilMTPVYRSVGRGPGGRGYLSSQRELRLGVYFWFRLFNVAPETTARFSYLDDRSRNQSPPCLGCRP
Ga0242675_113566623300022718SoilMAPTFRSIGLRPGERRYLSSECELRLGIYFWFRLFNVAPETTARFSYINDRSRNQ
Ga0242675_113730113300022718SoilVGLGPEERRYCLGSECERLLGICLLFRLFNVAPETTARFSYLDDRSRNQSPP
Ga0242666_121081013300022721SoilMTPAFRSVRRGPGGRRYLSSERERRLLGVCFWFRLFNVAPETTARFSYLDDRSRS
Ga0224549_106313313300022840SoilVLPLSEPYLMAPTFRSIGLRPGGRRYLSSERELRLGVCFWFRLFNVAPETTARFSYINDRSRSKSPPCGTS
Ga0247552_10062213300023536SoilMTPKIRSVGRGPAGRRYLSSDRELRLGVCFWFRLFNVVPETTARFSYLDDRSRNQSPP
Ga0247542_10445913300023544SoilMTPKIRSVGRGPAGRRYLSSDRELRLGVCFWFRLFNVAPETTARFSYLDD
Ga0208357_117560013300025703Arctic Peat SoilMASTFRSIGLRPGERRYLGSERELRLGVCFWFRLFNVAPETTARFSYI
Ga0207805_101503423300026887Tropical Forest SoilMTPDIRSVGRGPGGRRYLSSERELWLLGVCFWFRLFNVAPETTARFSYLDDRSRSQSPPLSWDADRLDRPMQS
Ga0209446_109110313300027698Bog Forest SoilMTPKIRSVGRGPAGRRYLSSDRELRLGVCFWFRLFNVVPETTARFSYLDDRSRNQ
Ga0209274_1023111013300027853SoilLPLSKPYLMAPTFRSIGLRPGGRRYLSSERELRLGVCFWFRLFNVAPETTARFSYINDRSRI
Ga0209415_1049713623300027905Peatlands SoilMTPEIRSVGRGPVGRRYLSSDRELRLGVCFWFRLFNVVPETTARFS
Ga0209698_1024351813300027911WatershedsMTPKTRSVGQRPVGRRYLSSERERWLRLGVCFWFRLFN
Ga0302223_1030407913300028781PalsaMTPTFRSIGLRPGGRRYLSSERELRLGVCFWFRLFNVAPETTA
Ga0302228_1016003113300028808PalsaMAPTFRSVGLRPGGRRYLSSERELRLGVCFWFRLFNVAPETTARFSYINDRSR
Ga0302235_1007804313300028877PalsaMTPKIRSVGRGPAGRRYLSSDRELRLGVCFWFRLFNVVPETTARFSYLDDRSRNQSPPCMGTPLIELIRP
Ga0222749_1032881913300029636SoilMTPKIRSVGRGPAGRRYLSSDRELRLGVCFWFRLFNVVPETTARFSYLDDRSRNQSPPCLDCA
Ga0311355_1132610213300030580PalsaVLPLSKPYLMASTFRSIGLRPGERRYLSSERELRLGVCFWFRLF
Ga0302313_1031354513300030693PalsaVLPLSKPYLMAPTFRSIGLRPGGRRYLSSERELRLGVCFWFRLFNVVPETTA
Ga0310038_1010840313300030707Peatlands SoilMTPEIRSVGQGPVGRRYLSSDRELRLGVCFWFRLFNVV
Ga0307920_11944813300030716SoilMGLRPDDRRYCLGSDCELRLGICVCFRLFNVVPETTARFSRIQCQSRIQSPP
Ga0265459_1365256513300030741SoilMAPTFRSIGLRPGGRRYLGSERELRLGVCFWFRLFNVAPETTARF
Ga0265762_107099123300030760SoilMTPVYQPVGLRLDGRRYCLGSERELRLGVYFWFRLFNVAPETTARFSHLDDQSRN
Ga0265762_113866323300030760SoilMPDIRSVGPGPGGHGYLSSQRELRLGVYFWFRLFNVAPETTARFSYLDDRSRN
Ga0265750_107065513300030813SoilVGLRPGERHCLLGSDCELRLGICFCFRLFNVAPETTARFSHLDDQSRSL
Ga0265738_10291513300030834SoilMTPVYRSVGRGPGGRRYLSSDRELRLGVCFWFRLFNV
Ga0302314_1060953523300030906PalsaMTPKIRSVGRGPAGRRYLSSDRELRLGVYFWFRLFNVVPETTARFSYLDDR
Ga0265732_10429523300031016SoilMAPTFRSIGLRPGGRRYLSSERELRLGVCFWFRLFNVVPETTARFSYFDDRSRS
Ga0138301_119449513300031022SoilMTPKIRSVGRGPAGRRYLSSDRELRLGVCFWFRLFNVVPETTARFSYLDDRSRNQSPPCMGTPLITLIRFTILWG
Ga0265749_10187113300031042SoilMTPANQPVGLRLGGRRYVLSSERELRLGVCFWFRLFNVAPETTARFSRL
Ga0170823_1180312613300031128Forest SoilMTPVYRSVGRGPGGRRYLSSDRELRLGVCFWFRLFNVAPETTARFSYLDDRSRNQSPPC
Ga0302325_1017324813300031234PalsaMSPMSKPYLMASTFRSIGLRPGERRYLSSERELRLGVCFWFRLFNVAPE
Ga0302325_1280693913300031234PalsaMAPTYRSAGLRPGGRRYLSSERELRLGVCFWFRLFNVVPETTARFSYFDDRSRNQ
Ga0302324_10003764423300031236PalsaMAPTFRSAGLRPGERRYLSSECELRLGIYFWFRLFNVVPETTARFSYINFRSRI
Ga0302326_1034961213300031525PalsaMAPTFRSIGLRRGGRRYLSSERELRLGVCFLFRLFNVAPETTARFSNLDDQSRSQSPP
Ga0318571_1022843423300031549SoilMTPDIRSVGRGPGGRRYLSSERELWLLGVCFWFRLFNVAPETTARFSYLDDRSRSQSPPLSWDADRLDRPRQSTACPR
Ga0318574_1031983513300031680SoilMTPDIRSVGRGPGGRRYLSSERELWLLGVCFWFRL
Ga0318560_1059170413300031682SoilMTPGIRSVGRGPGGRGYLSSQRELRLGVCFCFRLFNVAPETTARFSYLDDRSRNQSPPGLGLPI
Ga0310686_10247494513300031708SoilMAPTFRSIGLRPGGRRYLGSERELRLGVCFWFRLFNVAPETTARFSHLDDQSRNPSPPRE
Ga0310686_10756700723300031708SoilMTPKIRSVGRGPAGRRYLSSDRELRLGVCFWFRLFNVVPETT
Ga0306918_1060492423300031744SoilMTPDIRSVGRGPGGRRYLSSERELWLLGVCFWFRLFNVAPETTARFSYLDDRSRSQSPPLSWDADRLDRPIQSTA
Ga0318494_1093421413300031751SoilMTPGIRSVGRGPGGRGYLSSQRELRLGVCFCFRLFNVAPETTARFSYLDDRSRNQSPPCL
Ga0318526_1045784313300031769SoilMTPGIRSVGRGPGGRGYLSSQRELRLGVCFCFRLFNVAPETTARFSYLDD
Ga0318566_1010847933300031779SoilMTPDIRSVGRGPGGRRYLSSERELWLLGVCFWFRLFNVAPETTARFSYLDDRSRSQSPPL
Ga0318557_1051662713300031795SoilMTPDIRSVGRGPGGRRYLSSERELWLLGVCFWFRLFNVAPETTARFSYLDDRSRSQSPPLSWDADRLDRPI
Ga0316037_11780313300031808SoilMAPTFRSAGLRPGGRRYLSSDCELRLGIYFWFRLFNVVPETTARFSYINDRNRI
Ga0316031_11018013300031826SoilMTPVYQSVRRGLDGRRYLSSERERRLGVCFWFRLFNVAPETTARFSYLDDRSRS
Ga0318517_1036881213300031835SoilMTPGIRSVGRGPGGRGYLSSQRELRLGVCFWFRLFNVAPETT
Ga0318512_1012580233300031846SoilMTPDIRSVGRGPGGRRYLSSERELWLLGVCFWFRLFNVAPETTARFSYLDDRSRSQSPPLSWDADR
Ga0316038_11334013300031868SoilMTPKIRSVGRGPAGRRYLSSERELWLLGVCFWFRLFNVAPETTARFSYLDDRS
Ga0318506_1037765113300032052SoilMTPDIRSVGRGPGGRRYLSSERELWLLGVCFWFRLFNVAPETTARFSRLDNRSRDHSPPWAPWCAGR
Ga0326631_11733013300032072SoilMTPVFRSVGRGPGGRRYLSSERELRLGVCFWFRLFNV
Ga0348332_1067820413300032515Plant LitterMTPKIRSVGRGPAGRRYLSSERELWLLGVCFWFRLFNVAPETTARFSYLDDRSRN
Ga0348332_1098995623300032515Plant LitterMTPVYQPVGLRLDGRRYCLGSERELRLGVYFWFRLFNVAPETTARFSHLDDQSRNPS
Ga0348332_1127002213300032515Plant LitterMASTFRSVGLRPGERRYLSSERELRLGVCFWFRLFNVAPETTARFSYINSQSRNQSPPCRELQLT
Ga0348332_1171649413300032515Plant LitterMTPKIRSVGQGPAGRRYLSSDRELRLGVCFWFRLFNVVPETTARFSYL
Ga0348332_1476903013300032515Plant LitterMAPTFRSIGLRPGGRRYLSSERELRLGVCFWFRLFNVAPETTARFSYINDRSR
Ga0370492_0189925_1_1683300034282Untreated Peat SoilMTPKIRSVGRGPAGRRYLSSDRELRLGVCFWFRLFNVVPETTARFSYLDDRSRNQS


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