NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F103109

Metagenome / Metatranscriptome Family F103109

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F103109
Family Type Metagenome / Metatranscriptome
Number of Sequences 101
Average Sequence Length 38 residues
Representative Sequence TDGMRRPVSDGMLYAPKLSTRFEAQEIKETGNEEG
Number of Associated Samples 94
Number of Associated Scaffolds 101

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 11.88 %
% of genes near scaffold ends (potentially truncated) 91.09 %
% of genes from short scaffolds (< 2000 bps) 85.15 %
Associated GOLD sequencing projects 88
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (64.356 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland
(12.871 % of family members)
Environment Ontology (ENVO) Unclassified
(33.663 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(44.554 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 28.57%    β-sheet: 0.00%    Coil/Unstructured: 71.43%
Feature Viewer
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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 101 Family Scaffolds
PF02371Transposase_20 43.56
PF01548DEDD_Tnp_IS110 24.75
PF00069Pkinase 0.99
PF16657Malt_amylase_C 0.99
PF07646Kelch_2 0.99
PF02518HATPase_c 0.99
PF12681Glyoxalase_2 0.99
PF01022HTH_5 0.99
PF04956TrbC 0.99
PF00326Peptidase_S9 0.99
PF04185Phosphoesterase 0.99
PF08281Sigma70_r4_2 0.99
PF13561adh_short_C2 0.99
PF07883Cupin_2 0.99
PF01833TIG 0.99
PF05231MASE1 0.99
PF00589Phage_integrase 0.99

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 101 Family Scaffolds
COG3547TransposaseMobilome: prophages, transposons [X] 68.32
COG0515Serine/threonine protein kinaseSignal transduction mechanisms [T] 3.96
COG0642Signal transduction histidine kinaseSignal transduction mechanisms [T] 0.99
COG3055N-acetylneuraminic acid mutarotaseCell wall/membrane/envelope biogenesis [M] 0.99
COG3447Integral membrane sensor domain MASE1Signal transduction mechanisms [T] 0.99
COG3511Phospholipase CCell wall/membrane/envelope biogenesis [M] 0.99
COG3838Type IV secretory pathway, VirB2 component (pilin)Intracellular trafficking, secretion, and vesicular transport [U] 0.99
COG3851Signal transduction histidine kinase UhpB, glucose-6-phosphate specificSignal transduction mechanisms [T] 0.99


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A64.36 %
All OrganismsrootAll Organisms35.64 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001305|C688J14111_10044060Not Available1344Open in IMG/M
3300001661|JGI12053J15887_10563185All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae543Open in IMG/M
3300005187|Ga0066675_10872221All Organisms → cellular organisms → Bacteria680Open in IMG/M
3300005439|Ga0070711_100402349All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1111Open in IMG/M
3300005568|Ga0066703_10844653All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae523Open in IMG/M
3300005576|Ga0066708_11020694All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae513Open in IMG/M
3300005587|Ga0066654_10004369All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium4814Open in IMG/M
3300005764|Ga0066903_108604754All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae520Open in IMG/M
3300005834|Ga0068851_10429468All Organisms → cellular organisms → Bacteria781Open in IMG/M
3300005921|Ga0070766_10261123Not Available1101Open in IMG/M
3300005994|Ga0066789_10127867Not Available1084Open in IMG/M
3300006052|Ga0075029_100084497All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1884Open in IMG/M
3300006642|Ga0075521_10567828All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae558Open in IMG/M
3300006794|Ga0066658_10333333Not Available810Open in IMG/M
3300006797|Ga0066659_10624947All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium876Open in IMG/M
3300006881|Ga0068865_101925554All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae536Open in IMG/M
3300009093|Ga0105240_10003752All Organisms → cellular organisms → Bacteria → Acidobacteria23470Open in IMG/M
3300009093|Ga0105240_10084907All Organisms → cellular organisms → Bacteria → Acidobacteria3880Open in IMG/M
3300009093|Ga0105240_11339198Not Available754Open in IMG/M
3300009520|Ga0116214_1276644Not Available641Open in IMG/M
3300009523|Ga0116221_1167185Not Available956Open in IMG/M
3300009524|Ga0116225_1067174Not Available1695Open in IMG/M
3300009545|Ga0105237_10051164All Organisms → cellular organisms → Bacteria → Acidobacteria4150Open in IMG/M
3300009547|Ga0116136_1026155Not Available1834Open in IMG/M
3300009630|Ga0116114_1026853Not Available1706Open in IMG/M
3300009635|Ga0116117_1052490Not Available1003Open in IMG/M
3300009636|Ga0116112_1014386Not Available2908Open in IMG/M
3300009636|Ga0116112_1032524Not Available1642Open in IMG/M
3300009643|Ga0116110_1029578Not Available2059Open in IMG/M
3300009643|Ga0116110_1142107All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium796Open in IMG/M
3300009645|Ga0116106_1025194All Organisms → cellular organisms → Bacteria2067Open in IMG/M
3300009683|Ga0116224_10151741Not Available1115Open in IMG/M
3300009839|Ga0116223_10453684All Organisms → cellular organisms → Bacteria750Open in IMG/M
3300010043|Ga0126380_10138191Not Available1538Open in IMG/M
3300010358|Ga0126370_12192291Not Available544Open in IMG/M
3300010361|Ga0126378_10480269All Organisms → cellular organisms → Bacteria1358Open in IMG/M
3300010366|Ga0126379_10331014Not Available1544Open in IMG/M
3300011089|Ga0138573_1144135All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae503Open in IMG/M
3300011270|Ga0137391_10394229All Organisms → cellular organisms → Bacteria1184Open in IMG/M
3300012363|Ga0137390_10817133Not Available889Open in IMG/M
3300012677|Ga0153928_1038963Not Available965Open in IMG/M
3300012927|Ga0137416_11614090Not Available590Open in IMG/M
3300012948|Ga0126375_11614746Not Available559Open in IMG/M
3300012971|Ga0126369_11138438Not Available870Open in IMG/M
3300013307|Ga0157372_10245439All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae2078Open in IMG/M
3300016319|Ga0182033_11280360Not Available658Open in IMG/M
3300016357|Ga0182032_10125537Not Available1859Open in IMG/M
3300017931|Ga0187877_1037745Not Available2324Open in IMG/M
3300017933|Ga0187801_10294342Not Available659Open in IMG/M
3300017955|Ga0187817_10094901Not Available1873Open in IMG/M
3300018004|Ga0187865_1048097Not Available1728Open in IMG/M
3300018008|Ga0187888_1069496Not Available1562Open in IMG/M
3300018017|Ga0187872_10090108Not Available1552Open in IMG/M
3300018022|Ga0187864_10082121Not Available1713Open in IMG/M
3300018040|Ga0187862_10101414Not Available1994Open in IMG/M
3300018042|Ga0187871_10671786All Organisms → cellular organisms → Bacteria576Open in IMG/M
3300018043|Ga0187887_10040146Not Available2908Open in IMG/M
3300018046|Ga0187851_10147380Not Available1426Open in IMG/M
3300020580|Ga0210403_11188934Not Available588Open in IMG/M
3300021170|Ga0210400_10208264Not Available1591Open in IMG/M
3300021171|Ga0210405_10568903Not Available884Open in IMG/M
3300021180|Ga0210396_10266278Not Available1521Open in IMG/M
3300021181|Ga0210388_10235022Not Available1607Open in IMG/M
3300021405|Ga0210387_10263328Not Available1510Open in IMG/M
3300021445|Ga0182009_10316007Not Available790Open in IMG/M
3300021474|Ga0210390_10383453Not Available1188Open in IMG/M
3300025432|Ga0208821_1001933All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae9811Open in IMG/M
3300025460|Ga0208562_1015397Not Available1889Open in IMG/M
3300025500|Ga0208686_1018907Not Available1799Open in IMG/M
3300025501|Ga0208563_1025337Not Available1500Open in IMG/M
3300025507|Ga0208188_1072231All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium819Open in IMG/M
3300025898|Ga0207692_10181842All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales1225Open in IMG/M
3300025913|Ga0207695_10012133All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium10356Open in IMG/M
3300025913|Ga0207695_10109643All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Occallatibacter → Occallatibacter riparius2742Open in IMG/M
3300025919|Ga0207657_11129445All Organisms → cellular organisms → Bacteria598Open in IMG/M
3300025920|Ga0207649_10906399All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae691Open in IMG/M
3300026547|Ga0209156_10426548Not Available550Open in IMG/M
3300027854|Ga0209517_10064114All Organisms → cellular organisms → Bacteria2656Open in IMG/M
3300027854|Ga0209517_10200234Not Available1233Open in IMG/M
3300027854|Ga0209517_10337595Not Available867Open in IMG/M
3300028762|Ga0302202_10158635Not Available1204Open in IMG/M
3300028866|Ga0302278_10147709Not Available1230Open in IMG/M
3300028874|Ga0302155_10142473Not Available1057Open in IMG/M
3300030045|Ga0302282_1095170Not Available1242Open in IMG/M
3300030494|Ga0310037_10090730Not Available1423Open in IMG/M
3300030991|Ga0073994_12331816Not Available701Open in IMG/M
3300031018|Ga0265773_1018741Not Available665Open in IMG/M
3300031057|Ga0170834_107791067All Organisms → cellular organisms → Bacteria → Acidobacteria2015Open in IMG/M
3300031259|Ga0302187_10561262All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae515Open in IMG/M
3300031524|Ga0302320_10483305Not Available1509Open in IMG/M
3300031708|Ga0310686_116623982Not Available670Open in IMG/M
3300031715|Ga0307476_10279918Not Available1221Open in IMG/M
3300031719|Ga0306917_10145116Not Available1755Open in IMG/M
3300031959|Ga0318530_10163172Not Available908Open in IMG/M
3300031996|Ga0308176_11067145Not Available854Open in IMG/M
3300032001|Ga0306922_10530815Not Available1252Open in IMG/M
3300032261|Ga0306920_101432845All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium989Open in IMG/M
3300032770|Ga0335085_10401585Not Available1590Open in IMG/M
3300032783|Ga0335079_10841595All Organisms → cellular organisms → Bacteria947Open in IMG/M
3300032954|Ga0335083_11536951All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae504Open in IMG/M
3300033887|Ga0334790_047042Not Available1638Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland12.87%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil9.90%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland8.91%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil8.91%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil6.93%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil5.94%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere5.94%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil4.95%
BogEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Bog4.95%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil2.97%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil2.97%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment1.98%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil1.98%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere1.98%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere1.98%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds0.99%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.99%
Arctic Peat SoilEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil0.99%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil0.99%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil0.99%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil0.99%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Soil0.99%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil0.99%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil0.99%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil0.99%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil0.99%
SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Soil0.99%
FenEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Fen0.99%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere0.99%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere0.99%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.99%
Attine Ant Fungus GardensHost-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens0.99%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001305Grasslands soil microbial communities from Hopland, California, USAEnvironmentalOpen in IMG/M
3300001661Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)EnvironmentalOpen in IMG/M
3300005187Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124EnvironmentalOpen in IMG/M
3300005439Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaGEnvironmentalOpen in IMG/M
3300005568Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152EnvironmentalOpen in IMG/M
3300005576Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157EnvironmentalOpen in IMG/M
3300005587Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103EnvironmentalOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300005834Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2Host-AssociatedOpen in IMG/M
3300005921Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6EnvironmentalOpen in IMG/M
3300005994Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049EnvironmentalOpen in IMG/M
3300006052Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013EnvironmentalOpen in IMG/M
3300006642Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-DEnvironmentalOpen in IMG/M
3300006794Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107EnvironmentalOpen in IMG/M
3300006797Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108EnvironmentalOpen in IMG/M
3300006881Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2Host-AssociatedOpen in IMG/M
3300009093Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaGHost-AssociatedOpen in IMG/M
3300009520Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaGEnvironmentalOpen in IMG/M
3300009523Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaGEnvironmentalOpen in IMG/M
3300009524Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaGEnvironmentalOpen in IMG/M
3300009545Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaGHost-AssociatedOpen in IMG/M
3300009547Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_40EnvironmentalOpen in IMG/M
3300009630Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_40EnvironmentalOpen in IMG/M
3300009635Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_10EnvironmentalOpen in IMG/M
3300009636Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_150EnvironmentalOpen in IMG/M
3300009643Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_40EnvironmentalOpen in IMG/M
3300009645Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_40EnvironmentalOpen in IMG/M
3300009683Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaGEnvironmentalOpen in IMG/M
3300009839Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaGEnvironmentalOpen in IMG/M
3300010043Tropical forest soil microbial communities from Panama - MetaG Plot_26EnvironmentalOpen in IMG/M
3300010358Tropical forest soil microbial communities from Panama - MetaG Plot_3EnvironmentalOpen in IMG/M
3300010361Tropical forest soil microbial communities from Panama - MetaG Plot_23EnvironmentalOpen in IMG/M
3300010366Tropical forest soil microbial communities from Panama - MetaG Plot_24EnvironmentalOpen in IMG/M
3300011089Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 58 (Metagenome Metatranscriptome) (version 2)EnvironmentalOpen in IMG/M
3300011270Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaGEnvironmentalOpen in IMG/M
3300012363Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaGEnvironmentalOpen in IMG/M
3300012677Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ012 MetaGHost-AssociatedOpen in IMG/M
3300012927Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012948Tropical forest soil microbial communities from Panama - MetaG Plot_14EnvironmentalOpen in IMG/M
3300012971Tropical forest soil microbial communities from Panama - MetaG Plot_1EnvironmentalOpen in IMG/M
3300013307Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaGHost-AssociatedOpen in IMG/M
3300016319Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00HEnvironmentalOpen in IMG/M
3300016357Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000EnvironmentalOpen in IMG/M
3300017931Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_100EnvironmentalOpen in IMG/M
3300017933Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1EnvironmentalOpen in IMG/M
3300017955Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2EnvironmentalOpen in IMG/M
3300018004Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_100EnvironmentalOpen in IMG/M
3300018008Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_40EnvironmentalOpen in IMG/M
3300018017Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_40EnvironmentalOpen in IMG/M
3300018022Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_40EnvironmentalOpen in IMG/M
3300018040Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_150EnvironmentalOpen in IMG/M
3300018042Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10EnvironmentalOpen in IMG/M
3300018043Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10EnvironmentalOpen in IMG/M
3300018046Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_10EnvironmentalOpen in IMG/M
3300020580Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-MEnvironmentalOpen in IMG/M
3300021170Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-MEnvironmentalOpen in IMG/M
3300021171Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-MEnvironmentalOpen in IMG/M
3300021180Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-OEnvironmentalOpen in IMG/M
3300021181Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-OEnvironmentalOpen in IMG/M
3300021405Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-OEnvironmentalOpen in IMG/M
3300021445Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaGEnvironmentalOpen in IMG/M
3300021474Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-OEnvironmentalOpen in IMG/M
3300025432Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_40 (SPAdes)EnvironmentalOpen in IMG/M
3300025460Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_150 (SPAdes)EnvironmentalOpen in IMG/M
3300025500Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_40 (SPAdes)EnvironmentalOpen in IMG/M
3300025501Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_150 (SPAdes)EnvironmentalOpen in IMG/M
3300025507Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_40 (SPAdes)EnvironmentalOpen in IMG/M
3300025898Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025913Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025919Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025920Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026547Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 (SPAdes)EnvironmentalOpen in IMG/M
3300027854Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)EnvironmentalOpen in IMG/M
3300028762Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N3_3EnvironmentalOpen in IMG/M
3300028866Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N3_2EnvironmentalOpen in IMG/M
3300028874Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N3_1EnvironmentalOpen in IMG/M
3300030045Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_E1_3EnvironmentalOpen in IMG/M
3300030494Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG (v2)EnvironmentalOpen in IMG/M
3300030991Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-1A (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300031018Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE5 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031057Oak Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031259Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E1_3EnvironmentalOpen in IMG/M
3300031524Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3EnvironmentalOpen in IMG/M
3300031708FICUS49499 Metagenome Czech Republic combined assemblyEnvironmentalOpen in IMG/M
3300031715Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05EnvironmentalOpen in IMG/M
3300031719Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)EnvironmentalOpen in IMG/M
3300031959Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24EnvironmentalOpen in IMG/M
3300031996Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2EnvironmentalOpen in IMG/M
3300032001Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)EnvironmentalOpen in IMG/M
3300032261Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)EnvironmentalOpen in IMG/M
3300032770Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5EnvironmentalOpen in IMG/M
3300032783Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3EnvironmentalOpen in IMG/M
3300032954Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2EnvironmentalOpen in IMG/M
3300033887Peat soil microbial communities from Stordalen Mire, Sweden - 713 P-1-X1EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
C688J14111_1004406023300001305SoilKSDGMRRPVSDGMLYAPKLSTRFEAQEIKETGNEEG*
JGI12053J15887_1056318513300001661Forest SoilTDGMRRPVSGGMRYAPKLSTRSKAQEIKETGNEED*
Ga0066675_1087222113300005187SoilMRRPVSDGMLYAPKLSTCSEAQEIKETGNEKAYHRCGKLDGTTR
Ga0070711_10040234913300005439Corn, Switchgrass And Miscanthus RhizosphereMRRPVSDGMLYAPKLSTCCEAQEIKETGNEEAYQRCDKLDWKARKT
Ga0066703_1084465323300005568SoilDGMRRPVSDGMLYAPKLSTRFEAQEIKETGNEEG*
Ga0066708_1102069423300005576SoilSDGMRRPVSDGMLYAPKLSTCFEAQEIKETGNEEG*
Ga0066654_1000436913300005587SoilPDGMRRPVSDGMLYAPKLSTRFEAQEIKETGNEEG*
Ga0066903_10860475413300005764Tropical Forest SoilSDGMRRPVSGRDAVYAPKLSTCSKAQEIKETGNEKG*
Ga0068851_1042946813300005834Corn RhizosphereMRRPVSDGMLYAPKLSTCSEAQEIKETGNEEAYHRCD
Ga0070766_1026112313300005921SoilDGMRRPVSDGMLYAPKLSTCSKAQEIKETGNEEG*
Ga0066789_1012786713300005994SoilDGMRRPVSDGMLYAPKLSTRSKAQEIKKTGNEED*
Ga0075029_10008449733300006052WatershedsMLKSDGMRRPVSDGMLYAPKLSTRFEAQEIKETGNEE
Ga0075521_1056782823300006642Arctic Peat SoilLAKPDGMRMPVSGGMRYAPKLSTRSKRKEIKETGHEED*
Ga0066658_1033333313300006794SoilKSDGMRRPVSDGMLYAPKLSTCFEAQEIKETGNEEG*
Ga0066659_1062494723300006797SoilMRRPVSDGMLCAPKLSTCSEAQEIKETGNEKAYHHCGKLDGT
Ga0068865_10192555413300006881Miscanthus RhizosphereDGMRRPVSDGMLYAPKLSTCFEAQEIKETGNEEG*
Ga0105240_1000375223300009093Corn RhizosphereMLSGQLLLTDEMRRPVCGRDAVYAAKLSTCSKAQEIKETGNEEG*
Ga0105240_1008490723300009093Corn RhizosphereMKQTDEMRRPVSGRDAVYAPKLSTCSEAQEIKETGNEEG*
Ga0105240_1133919823300009093Corn RhizosphereMKSDGMRRPVSDGMLYASQVIDVLEAQEIKETGNEKG*
Ga0116214_127664413300009520Peatlands SoilPDGMRMPVSGGMRYAPKLSTRSKRKEIKETGNEED*
Ga0116221_116718513300009523Peatlands SoilFTKPDGMRRPVSDGMLYAPKLSTRFEAQEIKETGNEEG*
Ga0116225_106717413300009524Peatlands SoilLSDGMRRPVSGGMLYAPKLSTRSKRKQIKETGNEKG*
Ga0105237_1005116473300009545Corn RhizosphereMKQTDEMRRPVSGRDAVHAPKLSTCSEAQEIKETGNEEG*
Ga0116136_102615513300009547PeatlandDGMRMPVSGGMRYAPKLSTRSKRKEIKETGNEED*
Ga0116114_102685313300009630PeatlandPDGMRRPVSDGMLYAPKLSTRFEAQEIKETGNEED*
Ga0116117_105249013300009635PeatlandTDGMRRPVSDGMLYAPKLSTRSKAQEIKETGNEED*
Ga0116112_101438663300009636PeatlandMLSDGMRRPVSDGMLYAPKLSTRFEAQEIKETGNEED*
Ga0116112_103252413300009636PeatlandDGMRRPVSDGMLYAPKLSTRFEAQEIKETGNEED*
Ga0116110_102957813300009643PeatlandDGMRRPVSDGMLYAPKLSTRFEAQEIKETGNEKD*
Ga0116110_114210733300009643PeatlandMKLDGMRMPVSGGMRYAPKLSTRSKRKEIKETGNEED*
Ga0116106_102519413300009645PeatlandSDGMRRPVSDGMLYAPKLSTRFEAQEIKETGNEED*
Ga0116224_1015174113300009683Peatlands SoilTDGMRRPVSDGMRYAPKLSTRFEAQEIKETGNEED*
Ga0116223_1045368413300009839Peatlands SoilDGMRRPVSDGMRYAPKLSTRFEAQEIKETGNEED*
Ga0126380_1013819113300010043Tropical Forest SoilDEMRRPVSDGMLYAPKLSTCSEAQEIKETGNEKD*
Ga0126370_1219229123300010358Tropical Forest SoilMGRSYLLLTDEMRRPVSDGMLYAPKLSTCSEAQEIKETGNEKD*
Ga0126378_1048026923300010361Tropical Forest SoilVGHARNPLLTKPDGMRRPVSDGMLYAPRYPRARGTEKKETGNEE
Ga0126379_1033101413300010366Tropical Forest SoilQSDEMRRPVSDGMLYAPKLSTCSEAQEIKETGNEKD*
Ga0138573_114413513300011089Peatlands SoilSDGMRRPVSDGMLYAPKLSTRFEAQEIKETGNEEG*
Ga0137391_1039422913300011270Vadose Zone SoilSDGMRRPVSGGMRYALKLSTRSKAQEIKETANEGD*
Ga0137390_1081713313300012363Vadose Zone SoilTDGMRRPVSDGMLYAPKLSTRSKAQEIKETGNEEG*
Ga0153928_103896313300012677Attine Ant Fungus GardensITDGMRRPVSGGMLYAPKLSTRSTRKQIKETGNEKG*
Ga0137416_1161409013300012927Vadose Zone SoilSDGMRRPVSDGMLYAPKLSTRFEAQKIKETGNEED*
Ga0126375_1161474613300012948Tropical Forest SoilMGQLAKPDGMRRPVSDGMLYAPKLSTCSEAQEIKETGNEEGWHRDGQ
Ga0126369_1113843813300012971Tropical Forest SoilTDGMRRPVSGRDAVYAPKLSTCSEAQEIKETGNEEG*
Ga0157372_1024543923300013307Corn RhizosphereMKQTDEMRRPVSGRDAVYAPKLSTCSKAQEIKETGNEEG*
Ga0182033_1128036013300016319SoilDGMRRPVSGRDAVYAPKLSTCSKAQEIKETGNEKG
Ga0182032_1012553713300016357SoilKSDGMRRPVSGRDAVYAPKLSTCSKAQEIKETGNEKG
Ga0187877_103774513300017931PeatlandSDGMRRPVSDGMLYAPKLSTRFEAQEIKETGNEED
Ga0187801_1029434213300017933Freshwater SedimentSDGMRMPVSGGMRYAPKLSTRSRRKEIKETGNEKD
Ga0187817_1009490123300017955Freshwater SedimentVNPAISQVTKSDGMRRPVSGGMRYAPKLSTRSKAQEIKETGNEED
Ga0187865_104809713300018004PeatlandPDGMRRPVSDGMLYAPKLSTRFEAQEIKETGNEED
Ga0187888_106949633300018008PeatlandMLSDGMRRPVSDGMLYAPKLSTRFEAQEIKETGNEE
Ga0187872_1009010813300018017PeatlandSDGMRRPVSDGMLYAPKLSTRFEAQEIKETGNEKD
Ga0187864_1008212113300018022PeatlandPDGMRRPVSDGMLYAPKLSTRFEAQEIKETGNEKD
Ga0187862_1010141423300018040PeatlandLSQPDGMRRPVSDGMLYAPKLSTRFEAQEIKETGNEKD
Ga0187871_1067178623300018042PeatlandMQTDGMRRPVSDGMLYAPKLSTRFEAQEIKETGNE
Ga0187887_1004014673300018043PeatlandMLSDGMRRPVSDGMLYAPKLSTRFEAQEIKETGNEED
Ga0187851_1014738013300018046PeatlandPDGMRRPVSDGMLYAPKLSTRSKAQEIKETGNEED
Ga0210403_1118893413300020580SoilLMKSDGMRRPVSDGMLYAPKLSTRFEAQEIKETGNEEG
Ga0210400_1020826423300021170SoilVLLGLTDGMRRPVSDGMLYAPKLSTCFEAQEIKETGNEEG
Ga0210405_1056890323300021171SoilKPDGMRRPVSGRDAVYAPKLSTCSEAQEIKETGNEKG
Ga0210396_1026627813300021180SoilELFQTEGMRRPVSGRDAVYAPKLSTCSEAQEIKETGNEEG
Ga0210388_1023502213300021181SoilVISLAITDGMRRPVSDGMLYAPKLWTRSKRKQIKETGNEKG
Ga0210387_1026332813300021405SoilFCSKLAITDGMRRPVSDGMLYAPKLWTRSKRKQIKETGNEKG
Ga0182009_1031600723300021445SoilITDEMRRPVSGPDAVYAPKLSMCSRHEIKEIGNEEG
Ga0210390_1038345323300021474SoilLSKTDGMRRPVSDGMLYAPKLSTCSKAQEIKETGNEEG
Ga0208821_100193363300025432PeatlandHETHQLHIPDGMRMPVSGGMRYAPKLSTRSKRKEIKETGNEED
Ga0208562_101539713300025460PeatlandVSKTDGMRMPVSGGMRYAPKLSTRSKRKEIKETGNEED
Ga0208686_101890713300025500PeatlandYRSDGMRMPVSGGMRYAPKLSTRSKRKEIKETGNEED
Ga0208563_102533723300025501PeatlandDTDGMRRPVSDGMLYAPKLSTRFEAQEIKETGNEKD
Ga0208188_107223113300025507PeatlandMKLDGMRMPVSGGMRYAPKLSTRSKRKEIKETGNEED
Ga0207692_1018184223300025898Corn, Switchgrass And Miscanthus RhizosphereVKKTDGMRRPVSDGMLYAPKLSTCCEAQEIKETGNEEAYHRCDK
Ga0207695_1001213323300025913Corn RhizosphereMLSGQLLLTDEMRRPVCGRDAVYAAKLSTCSKAQEIKETGNEEG
Ga0207695_1010964343300025913Corn RhizosphereMKQTDEMRRPVSGRDAVYAPKLSTCSEAQEIKETGNEEG
Ga0207657_1112944513300025919Corn RhizosphereMRRPVSDGRLYAPKLSTCSEAQEIKETGNEEAYHR
Ga0207649_1090639913300025920Corn RhizosphereMRRPVSDGMLYAPKLSTCSEAQEIKETGNEEAYHRCDK
Ga0209156_1042654823300026547SoilKSDGMRRPVSDGMLYAPKLSTRFEAQEIKETGNEEG
Ga0209517_1006411443300027854Peatlands SoilTDGMRRPVSDGMRYAPKLSTRFEAQEIKETGNEED
Ga0209517_1020023423300027854Peatlands SoilQSDGMRRPVSDGMLYAPKLSTRFEAQEIKETGNEEG
Ga0209517_1033759523300027854Peatlands SoilLMLPDGMRRPVSDGMLYAPKLSTRFEAQEIKETGNEEG
Ga0302202_1015863513300028762BogGSFSTDGMRRPVSDGMLYAPKLSTRFEAQEIKETGNEEG
Ga0302278_1014770923300028866BogLLLTDGMRRPVSDGMLYAPKLSTRFEAQEIKETGNEEG
Ga0302155_1014247323300028874BogYSQLLLTDGMRRPVSDGMLYAPKLSTRFEAQEIKETGNEEG
Ga0302282_109517013300030045FenSQLLLTDGMRRPVSDGMLYAPKLSTRFEAQEIKETGNEEG
Ga0310037_1009073013300030494Peatlands SoilHQLYPLSDLLTQTDGMRRPVSDGMRYAPKLSTRFEAQEIKETGNEED
Ga0073994_1233181613300030991SoilSDGMRRPVSDGMLYAPKLSTRFEAQKIKETGNEED
Ga0265773_101874113300031018SoilTDGMRRPVSGGMRYAPKLSTRSKAQEIKETGNEED
Ga0170834_10779106713300031057Forest SoilTDGMRRPVSDGMLYAPKLSTCFEAQEIKETGNEEG
Ga0302187_1056126223300031259BogVYSQLLLTDGMRRPVSDGMLYAPKLSTRFEAQEIKETGNEEG
Ga0302320_1048330513300031524BogTDGMRRPVSDGMLYAPKLSTRFEAQEIKETGNEEG
Ga0310686_11662398213300031708SoilMVKPQYTLVQLTRTDGMRRPVSDGMRYAPKLSTCFEAQEIKETGNE
Ga0307476_1027991813300031715Hardwood Forest SoilMSRDYAPDQLSKPDGMRRPVSGRDAVYAPKLSTCSEAQEIKETGN
Ga0306917_1014511613300031719SoilSDGMRRPVSGRDAVYAPKLSTCSKAQEIKETGNEKG
Ga0318530_1016317213300031959SoilMLQSDGMRRPVSGRDAVYAPKLSTCSKAQEIKETGNEKG
Ga0308176_1106714523300031996SoilKSDGMRRPVSDGMLYAPKLSTCFEAQEIKETGNEEG
Ga0306922_1053081523300032001SoilTDGMRRPVSEGMLYAPKLSTCSEAQEIKETGNEEG
Ga0306920_10143284523300032261SoilMGWLSKSDGMRRPVSGRDAVYAPKLSTCSKAQEIKETGNEKG
Ga0335085_1040158513300032770SoilKTDEMRRPVSGRDAVYAPKLSTCSEAQEIKETGNEEG
Ga0335079_1084159523300032783SoilMFSQLSLTDGMRRPVSGRDAVYAPKLSTCSEAQEIKETGN
Ga0335083_1153695113300032954SoilLSDGMRRPVSDGMLYAPKLSTCSRAQEIKETGNEEG
Ga0334790_047042_1510_16383300033887SoilDAAQLAKTDGMRRPVSDGMLYAPKLSTRFEAQEIKETGNEKD


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