Metagenome / Metatranscriptome Family F103014

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F103014
Family Type	Metagenome / Metatranscriptome
Number of Sequences	101
Average Sequence Length	84 residues
Representative Sequence	MSNVLNRSLAIGAAAIVFAALAYGGVSAEEKKKAEPKPAACKTMTAEADCTARTDCSWVQASVDKKTGKEKRKAYCRTKPKSKKS
Number of Associated Samples	74
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	75.76 %
% of genes near scaffold ends (potentially truncated)	33.66 %
% of genes from short scaffolds (< 2000 bps)	82.18 %
Associated GOLD sequencing projects	68
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.20

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (78.218 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (23.762 % of family members)
Environment Ontology (ENVO)	Unclassified (35.644 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (41.584 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 21.24% β-sheet: 15.04% Coil/Unstructured: 63.72%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.20
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.20
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF03928	HbpS-like	38.61
PF00296	Bac_luciferase	9.90
PF07859	Abhydrolase_3	4.95
PF13560	HTH_31	2.97
PF01381	HTH_3	1.98
PF08291	Peptidase_M15_3	0.99
PF01047	MarR	0.99
PF08388	GIIM	0.99
PF00326	Peptidase_S9	0.99
PF00156	Pribosyltran	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	9.90
COG0657	Acetyl esterase/lipase	Lipid transport and metabolism [I]	4.95

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	78.22 %
Unclassified	root	N/A	21.78 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	78.22 %
Unclassified	root	N/A	21.78 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	78.22 %
Unclassified	root	N/A	21.78 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	58.42 %
Unclassified	root	N/A	21.78 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	41.58 %
Unclassified	root	N/A	21.78 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.99 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	21.78 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	19.80 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	11.88 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	4.95 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.99 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	21.78 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	18.81 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	5.94 %
unclassified Rhodospirillales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales	2.97 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.99 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.99 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	21.78 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	18.81 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	5.94 %
Rhodospirillales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	2.97 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.99 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.99 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	21.78 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	18.81 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	3.96 %
Rhodospirillales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	2.97 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.99 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.99 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	21.78 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	18.81 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	2.97 %
Rhodospirillales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	2.97 %
Rhodoplanes sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp.	0.99 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.99 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.99 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.99 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001686\|C688J18823_10840112	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	583	Open in IMG/M
3300003659\|JGI25404J52841_10127282	All Organisms → cellular organisms → Bacteria	538	Open in IMG/M
3300004781\|Ga0062379_10022518	All Organisms → cellular organisms → Bacteria → Proteobacteria	1099	Open in IMG/M
3300005332\|Ga0066388_100032150	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4963	Open in IMG/M
3300005332\|Ga0066388_100174300	All Organisms → cellular organisms → Bacteria → Proteobacteria	2754	Open in IMG/M
3300005332\|Ga0066388_100309871	All Organisms → cellular organisms → Bacteria → Proteobacteria	2224	Open in IMG/M
3300005332\|Ga0066388_100468325	All Organisms → cellular organisms → Bacteria → Proteobacteria	1900	Open in IMG/M
3300005332\|Ga0066388_101283344	All Organisms → cellular organisms → Bacteria → Proteobacteria	1260	Open in IMG/M
3300005332\|Ga0066388_102597639	All Organisms → cellular organisms → Bacteria	922	Open in IMG/M
3300005434\|Ga0070709_10679901	All Organisms → cellular organisms → Bacteria	799	Open in IMG/M
3300005446\|Ga0066686_10433654	All Organisms → cellular organisms → Bacteria	898	Open in IMG/M
3300005586\|Ga0066691_10557128	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	683	Open in IMG/M
3300005586\|Ga0066691_10811701	Not Available	551	Open in IMG/M
3300005713\|Ga0066905_100001562	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	7952	Open in IMG/M
3300005713\|Ga0066905_100057737	All Organisms → cellular organisms → Bacteria → Proteobacteria	2420	Open in IMG/M
3300005713\|Ga0066905_102216839	Not Available	512	Open in IMG/M
3300005764\|Ga0066903_100388622	All Organisms → cellular organisms → Bacteria → Proteobacteria	2286	Open in IMG/M
3300005764\|Ga0066903_101949513	All Organisms → cellular organisms → Bacteria → Proteobacteria	1126	Open in IMG/M
3300005764\|Ga0066903_102624627	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	977	Open in IMG/M
3300005764\|Ga0066903_103580501	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	837	Open in IMG/M
3300005764\|Ga0066903_106619178	All Organisms → cellular organisms → Bacteria	603	Open in IMG/M
3300005833\|Ga0074472_10235876	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	2009	Open in IMG/M
3300005833\|Ga0074472_11088183	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	971	Open in IMG/M
3300005937\|Ga0081455_10046797	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	3750	Open in IMG/M
3300005983\|Ga0081540_1206133	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	711	Open in IMG/M
3300006755\|Ga0079222_12457829	Not Available	522	Open in IMG/M
3300006854\|Ga0075425_101809019	All Organisms → cellular organisms → Bacteria	686	Open in IMG/M
3300006954\|Ga0079219_10640418	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	790	Open in IMG/M
3300007255\|Ga0099791_10412573	All Organisms → cellular organisms → Bacteria	651	Open in IMG/M
3300007788\|Ga0099795_10224080	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	801	Open in IMG/M
3300009137\|Ga0066709_103031102	All Organisms → cellular organisms → Bacteria	616	Open in IMG/M
3300010043\|Ga0126380_10221036	All Organisms → cellular organisms → Bacteria → Proteobacteria	1286	Open in IMG/M
3300010043\|Ga0126380_10295534	All Organisms → cellular organisms → Bacteria	1149	Open in IMG/M
3300010046\|Ga0126384_10249562	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1434	Open in IMG/M
3300010046\|Ga0126384_10861628	All Organisms → cellular organisms → Bacteria → Proteobacteria	815	Open in IMG/M
3300010046\|Ga0126384_11513165	All Organisms → cellular organisms → Bacteria	629	Open in IMG/M
3300010047\|Ga0126382_10640112	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	882	Open in IMG/M
3300010047\|Ga0126382_11033032	All Organisms → cellular organisms → Bacteria	723	Open in IMG/M
3300010358\|Ga0126370_10089756	All Organisms → cellular organisms → Bacteria → Proteobacteria	2093	Open in IMG/M
3300010358\|Ga0126370_10809168	Not Available	836	Open in IMG/M
3300010359\|Ga0126376_11808072	Not Available	649	Open in IMG/M
3300010359\|Ga0126376_13278089	All Organisms → cellular organisms → Bacteria	500	Open in IMG/M
3300010360\|Ga0126372_11775545	Not Available	660	Open in IMG/M
3300010362\|Ga0126377_10009761	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	7424	Open in IMG/M
3300010398\|Ga0126383_10473234	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1306	Open in IMG/M
3300010398\|Ga0126383_10922643	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	960	Open in IMG/M
3300012203\|Ga0137399_11407905	Not Available	583	Open in IMG/M
3300012207\|Ga0137381_10200507	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1729	Open in IMG/M
3300012349\|Ga0137387_10488418	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	894	Open in IMG/M
3300012349\|Ga0137387_11260394	All Organisms → cellular organisms → Bacteria	519	Open in IMG/M
3300012351\|Ga0137386_10160786	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1609	Open in IMG/M
3300012683\|Ga0137398_10747077	Not Available	682	Open in IMG/M
3300012685\|Ga0137397_10320962	All Organisms → cellular organisms → Bacteria → Proteobacteria	1154	Open in IMG/M
3300012685\|Ga0137397_11010102	Not Available	611	Open in IMG/M
3300012922\|Ga0137394_10395475	Not Available	1178	Open in IMG/M
3300012924\|Ga0137413_10118721	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp.	1680	Open in IMG/M
3300012927\|Ga0137416_10200660	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1600	Open in IMG/M
3300012930\|Ga0137407_10939306	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	818	Open in IMG/M
3300012930\|Ga0137407_11642136	Not Available	612	Open in IMG/M
3300012944\|Ga0137410_10010902	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	6158	Open in IMG/M
3300012944\|Ga0137410_11660882	Not Available	561	Open in IMG/M
3300012948\|Ga0126375_10260323	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	1181	Open in IMG/M
3300012971\|Ga0126369_10100834	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	2613	Open in IMG/M
3300012971\|Ga0126369_11234145	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	837	Open in IMG/M
3300012976\|Ga0134076_10297103	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	699	Open in IMG/M
3300015052\|Ga0137411_1276866	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2569	Open in IMG/M
3300015241\|Ga0137418_10111250	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	2452	Open in IMG/M
3300015242\|Ga0137412_10048807	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3451	Open in IMG/M
3300015245\|Ga0137409_11066896	All Organisms → cellular organisms → Bacteria → Proteobacteria	646	Open in IMG/M
3300015264\|Ga0137403_10021915	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6840	Open in IMG/M
3300015372\|Ga0132256_101466696	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	793	Open in IMG/M
3300017947\|Ga0187785_10067456	Not Available	1374	Open in IMG/M
3300017997\|Ga0184610_1144320	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	779	Open in IMG/M
3300018028\|Ga0184608_10045054	Not Available	1718	Open in IMG/M
3300018053\|Ga0184626_10415461	Not Available	535	Open in IMG/M
3300018066\|Ga0184617_1079370	All Organisms → cellular organisms → Bacteria → Proteobacteria	887	Open in IMG/M
3300018073\|Ga0184624_10183858	All Organisms → cellular organisms → Bacteria	929	Open in IMG/M
3300018076\|Ga0184609_10463218	Not Available	581	Open in IMG/M
3300018081\|Ga0184625_10076651	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1706	Open in IMG/M
3300018081\|Ga0184625_10152735	All Organisms → cellular organisms → Bacteria	1206	Open in IMG/M
3300019789\|Ga0137408_1237579	All Organisms → cellular organisms → Bacteria → Proteobacteria	1970	Open in IMG/M
3300020170\|Ga0179594_10068241	Not Available	1235	Open in IMG/M
3300021073\|Ga0210378_10259161	All Organisms → cellular organisms → Bacteria	657	Open in IMG/M
3300022756\|Ga0222622_10279704	All Organisms → cellular organisms → Bacteria → Proteobacteria	1141	Open in IMG/M
3300025905\|Ga0207685_10354739	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	740	Open in IMG/M
3300025906\|Ga0207699_11299155	All Organisms → cellular organisms → Bacteria	538	Open in IMG/M
3300025942\|Ga0207689_11485233	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	566	Open in IMG/M
3300026089\|Ga0207648_11493459	Not Available	635	Open in IMG/M
3300027384\|Ga0209854_1037230	Not Available	822	Open in IMG/M
3300027663\|Ga0208990_1078397	All Organisms → cellular organisms → Bacteria	943	Open in IMG/M
3300031184\|Ga0307499_10053139	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	999	Open in IMG/M
3300031198\|Ga0307500_10013754	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1679	Open in IMG/M
3300031198\|Ga0307500_10075495	All Organisms → cellular organisms → Bacteria	864	Open in IMG/M
3300031716\|Ga0310813_11142293	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	715	Open in IMG/M
3300031720\|Ga0307469_10479957	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1084	Open in IMG/M
3300031740\|Ga0307468_100114224	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1643	Open in IMG/M
3300032180\|Ga0307471_103781979	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	535	Open in IMG/M
3300034681\|Ga0370546_054512	Not Available	624	Open in IMG/M
3300034820\|Ga0373959_0098071	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	694	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	90.10%
Host-Associated	Host-Associated	9.90%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	77.23%
Aquatic	Environmental → Aquatic	12.87%
Plants	Host-Associated → Plants	9.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	77.23%
Sediment	Environmental → Aquatic → Sediment	10.89%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.94%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.96%
Freshwater	Environmental → Aquatic → Freshwater	1.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	56.44%
Loam	Environmental → Terrestrial → Soil → Loam	18.81%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	10.89%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.95%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.97%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.99%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.99%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.99%
Sand	Environmental → Terrestrial → Soil → Sand	0.99%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.99%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	47.52%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	14.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	10.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.95%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.96%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.97%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.97%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.97%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.98%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.99%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.99%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.99%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.99%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.99%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.99%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	23.76%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	17.82%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	13.86%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	7.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.97%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.97%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.97%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	2.97%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	1.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.98%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.99%
Wetland Sediment	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment	0.99%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.99%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.99%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.99%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.99%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.99%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.99%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	0.99%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.99%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.99%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.99%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.99%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.99%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001686	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300003659	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1	Host-Associated	Open in IMG/M
3300004781	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T0Bare2Fresh	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005833	Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.174_CBK	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300005983	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012976	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaG	Environmental	Open in IMG/M
3300015052	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300017947	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MG	Environmental	Open in IMG/M
3300017997	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018053	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1	Environmental	Open in IMG/M
3300018066	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_b1	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300019789	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redo	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027384	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_30_40 (SPAdes)	Environmental	Open in IMG/M
3300027663	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300031184	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 13_S	Environmental	Open in IMG/M
3300031198	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 14_S	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300034681	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_121 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034820	Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_2	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
C688J18823_108401122	3300001686	Soil	MSNVLNRSLAIGAAAIVFAALAFGGVSAEEKKKATEPKVAACKTMKADADCTARSDCSWVQASVDKKTGK
JGI25404J52841_101272822	3300003659	Tabebuia Heterophylla Rhizosphere	MSNLLNRCLGIGAAAIVVAAFAFGGVSAEEKKKAEPKPAACKSLTAEADCTARNDCGWVQASVNKKTGK
Ga0062379_100225181	3300004781	Wetland Sediment	MSNLLHRSLGIGAAAIVFAALAYGGVSAEEKKKAPEPKAAACNSLKVEADCTARTDCSWVHASIDKKTGKEKRKAYC
Ga0066388_1000321506	3300005332	Tropical Forest Soil	MSNLLNRSLAIGAAAIVLAALAYGGVSAEEKKAEPKPAACKTMKAEADCTGRDDCSWVQASVDKKTGKEKRKAYCRVKPKSKKSA*
Ga0066388_1001743002	3300005332	Tropical Forest Soil	MSNVLNRSLAIGTAAIVFAALAYGGVSAEEKKKAAEPKPAACKTMTAESDCTARNDCGWVQASVDKKTGKEKRKAYCRTKPKSKKT*
Ga0066388_1003098713	3300005332	Tropical Forest Soil	MSNLLNRSLAIGAVAILFAALAYGGVSAQEKAAPKSAACKSMKAEADCTGRDDCSWVQASVDKKTGKEKRKAYCRVKPKSKKSA*
Ga0066388_1004683253	3300005332	Tropical Forest Soil	MSNLLNRSLAVGAAAIVFAALAYGGVSAEEKKKAAEPKPAACKTMTAEGDCTARNDCSWVQASVDKKTGKEKRKAYCRTKPKSKKT*
Ga0066388_1012833441	3300005332	Tropical Forest Soil	MRNLLPRLLGVSAVAVVLAAFAYGSVSAEEKKKAEPKPAACNSLKEEAACTAREDCSWIAASVDSKTNKVKRKAYCRAKPKSKGKMG*
Ga0066388_1025976392	3300005332	Tropical Forest Soil	GAAAIVLAALAYGGVSAEEKKAEPKPAACKTMTAEADCTGRDDCSWVAASVDKKTGKEKRKAYCRTKPKSKKSA*
Ga0070709_106799012	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MSNVLNRSLAIGAAAIVFAALAYGGVSAEEKKKAEPKPAACKTMTAEADCTARTDCSWVKASIDAKTGKEKRKAYCRSKPKSKK*
Ga0066686_104336541	3300005446	Soil	MSNLLNRCLGIGAGAIVLAALAYGGVSAEAKKAEPKPAACKSMKAEADCTARDDCSWVQASVDKKTGKEKRKAYCRVKPKSKKSA*
Ga0070678_1017628181	3300005456	Miscanthus Rhizosphere	VFAALAYGGVSAEEKKKAEPKPAACKTMTAEADCTARTDCSWVKASIDAKTGKEKRKAYCRSKPKSKK*
Ga0066691_105571281	3300005586	Soil	MSNLLNRSLGIGAAAIVLAALAFGGVSAEEKKKAEPKPAACKSMTAESDCTARDDCGWVQASVDKKTGKEKRKAYC
Ga0066691_108117011	3300005586	Soil	MSNLLNRSLAIGAAAIVLAALAYGGVSAEEKKAEPKPAACKSMKAEADCTARDDCSWVQASVDKKTGKEKRKAYCRVKPKSKKSA*
Ga0066905_1000015625	3300005713	Tropical Forest Soil	MGNLLNRSLGIGAAAIVLAALAFGGVSAEEKKKAEPKPAACKSMKAEADCTARNDCGWVQASVNKKTGKETRKAYCRTKPKSKKAA*
Ga0066905_1000577375	3300005713	Tropical Forest Soil	MSNLLNRSLAVGAAAIVLAALAYGGVSAEEKKAEPKPAACKSMKAEADCTARDDCSWVQASVDKKTGKEKRKAYCRVKPKSKKSA*
Ga0066905_1022168392	3300005713	Tropical Forest Soil	MSNLLNRALGIGAAAIVFAALAYGGVSAEEKKKAEPKPAACKSMKMETDCTARNDCSWVQASVDKKSGKE
Ga0066903_1003886222	3300005764	Tropical Forest Soil	MSNLLNRSLSIGAAAIVLAALAYGGVSAEEKKAEPKPPACRSVKMEADCTARDDCSWVAASVDTKTGKEKRKAYCRTKPKSKKSS*
Ga0066903_1019495132	3300005764	Tropical Forest Soil	MSNLLNRSLGIGAAAIVLAALAFGGVSAEEKKAEAKPAACRTMKAESDCTARDDCSWVQPSVDKKTGKEKRKAYCRTKPKSKKST*
Ga0066903_1026246272	3300005764	Tropical Forest Soil	MNKSTYRLLSVSAFAIVFAALAYGGVSAQEKKKAEPKPAACNSLKEESACGAREDCSWIAASIDQKTQKEKRKAYCRAKPKSATKKT*
Ga0066903_1035805012	3300005764	Tropical Forest Soil	MSNLLNRSLAIGAVAVVFAALAYGGVSAEEKAAPKPAACKSMKAEADCTGRDDCSWVQASVDKKTGKEKRKAYCRVKPKSKKSA*
Ga0066903_1066191781	3300005764	Tropical Forest Soil	AAIVLAALAYGGVSAEEKKAEPKPAACNTMTAEADCTGRDDCSWVAASVDKKTGKEKRKAYCRTKPKSKKSA*
Ga0074472_102358762	3300005833	Sediment (Intertidal)	MKILLQRSLGVCAAGVVVAALAYGGVSAEEKKKGEPKPPACNSLKVEADCVARNDCSWVKASISKKTGKETRKAYCRSKPKTKKT*
Ga0074472_110881832	3300005833	Sediment (Intertidal)	MKYLLQRSLGVCAAGVVVAALAYGGVSAEEKKKGEPKPPACNSLKVEADCVARNDCSWVKASISKKTGKETRKAYCR
Ga0081455_100467976	3300005937	Tabebuia Heterophylla Rhizosphere	MSNLLNRCLGICAAAIVLAALALGGVSAEEKKKAEPKPAACKSMKAEADCTARDDCGWVQASVNKKTGKETRKAYCRTKPKSKKSA*
Ga0081540_12061332	3300005983	Tabebuia Heterophylla Rhizosphere	MSNLLNRCLGIGAAAIVVAAFAFGGVSAEEKKKAEPKPAACKSLTAEADCTARNDCGWVQASVNKKTGKETRKAYCRAKPKSKKSA*
Ga0079222_124578292	3300006755	Agricultural Soil	MSNVLNRSLAIGAAAIVFAALAYGGVSAEEKKKAELKPAACKTMTADADCTARTDCSWVQASVDKKTGKEKRKAYCRTK
Ga0075425_1018090192	3300006854	Populus Rhizosphere	MSNVLNRSLAIGAAAIVFAALAFGGVSAEEKKKAEPKPAACKTMTADADCTARTDCSWVNASVDKKTGKEKRKAYCRTKPKSKKA*
Ga0079219_106404182	3300006954	Agricultural Soil	MSNVLNRSLAIGAAAIVFAALAFGGVSAEEKKKAEPKPAACKTMTADADCTARTDCSWVNASVDKKTGEGRRKAYCRT
Ga0099791_104125731	3300007255	Vadose Zone Soil	IVFAALAYGGVSAEEKKKAAEPKPAACKTLTADADCTARSDCGWVQASVDKKTGKEKRKAYCRTKPKSKKS*
Ga0099795_102240802	3300007788	Vadose Zone Soil	MSNVLNRSVAIGAVAIVFAALAYGGVSAEEKKKAAEPKPAACKTLTADADCTARSDCGWVQASVDKKTGKEKRKAYCRTKPKSKKS*
Ga0066709_1030311022	3300009137	Grasslands Soil	MGAAAIVLAALAFGGVSAEEKKKAEPKPAACKSMTAEADCTARDDCSWVQASVDKKSGKEKRKAYCRTKPTPKSKKSA*
Ga0126380_102210363	3300010043	Tropical Forest Soil	MSNLLNRSLAIGAVAIVFAALAYGGVSAEEKAAPKSAACKSMKAEADCTGRDDCSWVQASVDKKTGKEKRKAYCRVKPKSKKSA*
Ga0126380_102955342	3300010043	Tropical Forest Soil	MSNLLNRSLAVGAAAIVFAALAYGGVSAEEKKKAAEPKPAACKTTTAEGDCTARNDCSWVQASVDKKTGKEKRKAYCRTKPKSKKT*
Ga0126384_102495621	3300010046	Tropical Forest Soil	AIVFAALAYGGVSAEEKKKAAEPKPAACKTMTAEGDCTARNDCSWVQASVDKKTGKEKRKAYCRTKPKSKKT*
Ga0126384_108616281	3300010046	Tropical Forest Soil	MRNVLNRSLAIGAAAIVFAALAYGGVSAEEKKKAAEPKPAACKTMTAEADCTGRDDCSWVQASVDKKTGKEKRKAYCRTKPKSKKT*
Ga0126384_115131652	3300010046	Tropical Forest Soil	AALVLAALAYGGGSVSAEEKKAEPKPAACKSMKAEADCTGRDDCSWVQASVDKKTGKEKRKAYCRVKPKSKKSA*
Ga0126382_106401121	3300010047	Tropical Forest Soil	MSNLLNRSLAIGAVAIVFAALAYGGVSAEEKAAPKPAACKSMKAEADCAVRDDCSWVQASVDKKSGKEKRKAYCRVKPKSKKSA
Ga0126382_110330321	3300010047	Tropical Forest Soil	TIEEQTMGNLLNRSLGIGAAAIVLAALAFGGVSAEEKKKAEPKPAACKSMKAEADCTARNDCGWVQASVNKKTGKETRKAYCRTKPKSKKAA*
Ga0126370_100897561	3300010358	Tropical Forest Soil	ISMSNLLNRSLSIGAAAIVLAALAYGGVSAEEKKAEPKPPACRSVKIEADCTARDDCSWVAASVDTKTGKEKRKAYCRTKPKSKKSS*
Ga0126370_108091682	3300010358	Tropical Forest Soil	MSNVLNRSLAIGAAAIVFAALAYGGVSAEEKKKAAEPKPAACKTMTAEGDCTARNDCSWVQASVDKKTGKEKRKAYCRTKPMSKKT*
Ga0126376_118080721	3300010359	Tropical Forest Soil	MQRGHPVFVVRPTIEEQTMSNLLNRSLGIGAAAIVLAALAYGGVSAEEKKAEPKPAACKTMTAEADCTGRDDCSWVAASVDKKTGKEKRKAYCRTKPKSKKSA*
Ga0126376_132780891	3300010359	Tropical Forest Soil	REANHRGATMSNLLNRSLAVGAAAIVLAALAYGGVSAEEKKAEPKPAACKSMKAEADCTARDDCSWVQASVDKKTGKEKRKAYCRVKPKSKKSA*
Ga0126372_117755452	3300010360	Tropical Forest Soil	MSSLLNRSLSIGAAAIVLAALAYGGVSAEEKKAEPKPAACKTMKAEADCTARDDCSWVAASVDTKTGKEKRKAYCRTKPKSKKSS*
Ga0126377_100097619	3300010362	Tropical Forest Soil	MSNLLNRSLAIGAVAIVFAALAYGGVSAEEKAAPKPAACKSMKAEADCTGRDDCNWVQASVDKKTGKEKRKAYCRVKP
Ga0126383_104732342	3300010398	Tropical Forest Soil	MSNLLNRSLSIGAAAIVLAALAYGGVSAEEKKAEPKPPACRSVKMEADCTARDDCSWVAASVDSKTGKEKRKAYCRTKPKSKKSS*
Ga0126383_109226431	3300010398	Tropical Forest Soil	MSNLLNRSLAVGAAAIVFAALTYGGVSAEEKKKAAEPKPAACKTMTAEGDCTARNDCSWVQASVDKKTGKEKRKAYCRTKPKSKKT*
Ga0137399_114079051	3300012203	Vadose Zone Soil	MSNVLNRSLAIGAAAIVFAALAYGGVSAEEKKKAEPKPAACKTMTAEADCTARTDCSWVQASVDKKTGKEKRKAYCRTKPKSKKS*
Ga0137381_102005072	3300012207	Vadose Zone Soil	MSNLLNRSLGIGAAAIVLAALAFGGVSAEEKKKAEPKPAACKSMTAESDCTARDDCGWVQASVDKKTGKEKRKAYCRTKPKSKK*
Ga0137387_104884182	3300012349	Vadose Zone Soil	MNNLLNRSLGIGAAAIVLAALAFGGVSAEEKKKAEPKPAACRSMTAESDCTARDDCGWVQASVDKKTGKEKRKAYCRTKPKSKK*
Ga0137387_112603941	3300012349	Vadose Zone Soil	IGAVAIVFAALAYGGVSAEEKKKAAEPKPAACKTLTADADCTARSDCGWVQASVDKKTGKEKRKAYCRTKPKSKKS*
Ga0137386_101607862	3300012351	Vadose Zone Soil	MSNLLNRSLGIGAAAIVLAALAFGGVSAEEKKKAEPKPAACRSMTAESDCTARDDCGWVQASVDKKTGKEKRKAYCRTKPKSKK*
Ga0150984_1083785532	3300012469	Avena Fatua Rhizosphere	VEKHRLGFLSLSAIAIVLSALAFSDVSAEEKKKGEPKPPACNSLKDETDCTAREDCTWVAASIYAKTQKEKRKAYCHSKPKPKPKTKT*
Ga0137398_107470771	3300012683	Vadose Zone Soil	MSNVLNRSVAIGAVAIVFAALAYGGVSAEEKKKAAEPKPAACKTLTADADCTARSDCGWVQASVDKKTGK
Ga0137397_103209622	3300012685	Vadose Zone Soil	MSNALNRSLAIGAAAIVFAALAYGGVSAEEKKKAAEPKPAACKTLTADADCTARSDCGWVQASVDKKTGKEKRKAYCRTKPKSKKS*
Ga0137397_110101022	3300012685	Vadose Zone Soil	MPSTWGLTNMRSNLLQRSLGISAAAIVIAALTYGGVSAEEKKKGEPKPPACKTMKDETGCRAREDCSWVAASIDTKTNKEKRKAYCRTKPKTTKKTT*
Ga0137394_103954752	3300012922	Vadose Zone Soil	MPSTWELTNMRSNLLQRSLGISAAAIVIAALTYGGVSAEEKKKGEPKPPACKTIKDETGCRAREDCSWVAASTDTKTNKEKRKAYCRTKPKTTKKTT*
Ga0137413_101187213	3300012924	Vadose Zone Soil	MSNVLNRSLAIGAAAIVFAALAYGGVSAEEKKKAAEPKPAACKTLTADADCTARSDCGWVQASVDKKTGKEKRKAYCRTKPKSKKS*
Ga0137416_102006603	3300012927	Vadose Zone Soil	MSNLFNRSLGIGGAAIVMEDLAFGGVSAEEKKKAEPKPAACKTMTAEADCTAREDCSWVQASVDKKTGKEKRKAYCRTKPKPKKSA*
Ga0137407_109393061	3300012930	Vadose Zone Soil	MIPTLNERFCSCCEATIEEQTMSNLLNRCLGIGAAAIVFAALAYGGVSAEEKKKAEPKPAACTSMKMEADCTARNDCGWVQASVDTKTGKEKRKAYCRTKPKSKK
Ga0137407_116421361	3300012930	Vadose Zone Soil	MPSTWELTNMRSNLLQRSLGISAAAIVIAALTYGGVSAEEKKKGEPKPPACKTIKDETGCKAREDCSWVAASIDAKTNKEKRKAYCRAKPKTTKKTT*
Ga0137410_100109029	3300012944	Vadose Zone Soil	MSNVLNRSLAIGAAAIVFAALAYGGVSAEEKKKAAEPKPAACKTLTADADCTARSDCSWVQASVDKKTGKEKRKAYCRTKPKSKKS*
Ga0137410_116608821	3300012944	Vadose Zone Soil	MPSTWELTNMRSNLLQRSLGISAAAIVIAALTYGGVSAEEKKKGEPKPPACKTMKDETGCRAREDCSWVAASIDTKTNKEKRKAYCRTKPKTTKKTT*
Ga0126375_102603232	3300012948	Tropical Forest Soil	MSNLLNRSLAIGAVAIVFAALAYGGVSAEEKAAPKPAACKSMKAEADCAVRDDCSWVQASVDKKSGKEKRKAYCRVKPKSKKSA*
Ga0126369_101008344	3300012971	Tropical Forest Soil	MSNLLNRSLSIGAAAVVLAALAYGGVSAEEKKAEPKPPACRSVKMEADCTARDDCSWVAASVDTKTGKEKRKAYCRTKPKSKKSS*
Ga0126369_112341451	3300012971	Tropical Forest Soil	TMSNLLNRSLGIGAAAIVLAALAYGGVSAEEKKAEPKPAACKTMTAEADCTGRDDCSWVAASVDKKTGKEKRKAYCRTKPKSKKSA*
Ga0134076_102971031	3300012976	Grasslands Soil	MGAAAIVLAALAFGGVSAEEKKKAEPKPAACKSMTAEADCTGRDDCSWVQASVDKKSGKEKRKAYCRTKPTPKSKKSA*
Ga0137411_12768661	3300015052	Vadose Zone Soil	RFKEKSTMSNALNRSLAIGAAAIVFAALAYGGVSAEEKKKAAEPKPAACKTLTADADCTARSDCGWVQASVDKKTGKEKRKAYCRTKPKSKKS*
Ga0137418_101112501	3300015241	Vadose Zone Soil	MSNVLNRSLAIGAAAIVFAALAYGGVSAEEKKKAEPKPAACKTMTAEADCTARTDCSWVQASVDKKTGKEKRKAYCRTKPKSKK*
Ga0137412_100488073	3300015242	Vadose Zone Soil	VPEVAPQIDRYSTVIAIGAVAIVFAALAYGGVSAEEKKKAAEPKPAACKTLTADADCTARSDCGWVQASVDKKTGKEKRKAYCRTKPKSKKS*
Ga0137409_110668961	3300015245	Vadose Zone Soil	NLLQRSLGISAAAIVIAALTYGGVSAEEKKKGEPKPPACKTMKDETGCRAREDCSWVAASIDTKTNKEKRKAYCRTKPKTTKKTT*
Ga0137403_100219159	3300015264	Vadose Zone Soil	MSNALNRSLAIGAAAIVFAALAYGGVSAEEKKKAAEPKPAACKTLTADADCTARSDCGWVQASVDKKTGKEKRKAYCRTKPKSKKT*
Ga0132256_1014666962	3300015372	Arabidopsis Rhizosphere	MSNVLNRSLGIGAAAIVFAALAFGGVSAEEKKKAEPKPAACKTMTADADCTARTDCSWVNASVDKKTGKEKR
Ga0187785_100674561	3300017947	Tropical Peatland	MSNVLNRSLAAGAVAIVFVALAYGGVSAEEKKAEPKPAACKTMSAEADCTGRTDCSWVQASVDKKTGKEKRKAYCRTKPKSKKSA
Ga0184610_11443202	3300017997	Groundwater Sediment	MSNALNRSLAIGAAAIVFAALAYGGVSAEEKKKAAEPKPAACKTLTADADCTARSDCGWVQASVDKKTGKEKRKAYCRTKPKSKKT
Ga0184608_100450542	3300018028	Groundwater Sediment	MSNVLNRSLAIGAAAIVFAALAYGGVSAEEKKKAAEPKPAACKTLTADADCTARSDCGWVQASVDKKTGKEKRKAYCRTKPKSKKT
Ga0184626_104154611	3300018053	Groundwater Sediment	MSNLLNRCLGIGAAAIVLAALALGGVSAEEKKKAEPKPAACKSMKMEADCTARSDCSWVKASINAKTGKETRKAYCRSKPKSKKT
Ga0184617_10793702	3300018066	Groundwater Sediment	MSNVLNRSLAIGAAAIVFAALAYGGVSAEEKKKAAEPKPAACKTMTADADCTARNDCSWVQASVDKKTGKEKRKAYCRTKPKSKKT
Ga0184624_101838582	3300018073	Groundwater Sediment	MSNVLNRSLAIGAAAIVFAALAYGGVSAEEKKKAAEPKPAACKTMTADADCTARSDCGWVQASVDKKTGKEKRKAYCRTKPKSKKT
Ga0184609_104632182	3300018076	Groundwater Sediment	MSNLLHRSLGIGAAAIVFVALAYGGVSAEEKKKAEPKPAACKSMKMEADCTARSDCSWVKASINAKTGKETRKAYCRSKPKSKKA
Ga0184625_100766512	3300018081	Groundwater Sediment	MSNLLNRCLGIGAAAIVLAALALGGVSAEEKKKAEPKPPACKSMKMEADCTARSDCSWVKASINAKTGKETRKAYCRTKPKSKKSA
Ga0184625_101527353	3300018081	Groundwater Sediment	MSNVLNRSLAIGAAAIVFAALAYGGVSAEEKKKAAEPKPAACKTLTADADCTARSDCGWVQASVDKKTGKEKRKAYCRTKPKSKKS
Ga0137408_12375792	3300019789	Vadose Zone Soil	MSNALNRSLAIGAAAIVFAALAYGGVSAEEKKKAAEPKPAACKTLTADADCTARSDCGWVQASVDKKTGKEKRKAYCRTKPKSKKS
Ga0179594_100682411	3300020170	Vadose Zone Soil	MSNVLNRSLAIGAAAIVFAALAYGGVSAEEKKKAEPKPAACKTMTAEADCTARTDCSWVQASVDKKTGKEKRKAYCRTKPKSKKS
Ga0210378_102591611	3300021073	Groundwater Sediment	EWAVMNNLLHRSLGVCAAAIVFVALAYGGVSAEEKKKAEPKPAACKSMKMEADCTARSDCSWVKASINAKTGKETRKAYCRSKPKSKKT
Ga0222622_102797042	3300022756	Groundwater Sediment	MSNVLNRSLAIGAAAIVFAALAYGGVSAEEKKKAAEPKPAVCKTMTAEGDCTARNDCSWVHASVDKKTGKEKRKAYCRTKPKSKKA
Ga0207685_103547392	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	MSNVLNRSLAIGAAAIVFAALAYGGVSAEEKKKAEPKPAACKTMTAEADCTARTDCSWVKASIDAKTGKEKRKAYCRSKPKSKK
Ga0207699_112991552	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	AIGAAAIVFAALAYGGVSAEEKKKAEPKPAACKTMTAEADCTARTDCSWLKASIDAKTGKEKRKAYCRSKPKSKK
Ga0207689_114852332	3300025942	Miscanthus Rhizosphere	MSNVLNRSLAIGAAAIVFAALAYGGVSAEEKKKAEPKPAACKTMTAEADCTARTDCSWVKASIDAKTGKE
Ga0207648_114934592	3300026089	Miscanthus Rhizosphere	MRFCLLIVFAALAYGGVSAEEKKKAEPKPAACKTMTAEADCTARTDCSWVKASIDAKTGKEKRKAYCRSKPKSKK
Ga0209854_10372302	3300027384	Groundwater Sand	MGRKLFGALGTSAIAIVLAALAYGTVVAEEKKKAETPPTCRSLKDEAACKARDDCSWVAARIDAKTGKEKRKAYCRTKPRPKKK
Ga0208990_10783972	3300027663	Forest Soil	MSNVLNRSVAIGAVAIVFAALAYGGVSAEEKKKAAEPKPAACKTLTADADCTARSDCGWVQASVDKKTGKEKRKAYCRTKPKSKKS
Ga0307499_100531392	3300031184	Soil	MSNVLNRSLAIGAAAIVFAALAYGGVSAEEKKKAAEPKPAACKTMTADADCTARNDCSWVHASVDKKTGKEKRKAYCRTKPKSKKT
Ga0307500_100137543	3300031198	Soil	MSNVLNRSLAIGAAAIVFAALAYGGVSAEEKKKAEPKPAACKTVTADADCTARTDCSWVQASVDKKTGKEKRKAYCRTKPKSKKT
Ga0307500_100754951	3300031198	Soil	AIVFAALAYGGVSAEEKKKAEPKPAACKTMTAEADCTARTDCSWVKASIDAKTGKEKRKAYCRTKPKSKKS
Ga0310813_111422931	3300031716	Soil	MSNALNRSLAIGAAAIVFAALAYGGVSAEEKKKAEPKPAACKTMTAEADCTARTDCSWVKASIDAKTGKEKRKAYCRSKPKSKK
Ga0307469_104799572	3300031720	Hardwood Forest Soil	MSNLLIRALGIGAAAIVLAALALGGVSAEEKKKAEPKPAACKSMKAEADCTARNDCGWVQASVNKKTGKETRKAYCRTKPKSSKKAA
Ga0307468_1001142243	3300031740	Hardwood Forest Soil	MSNLLNRALGIGAAAIVLAALALGGVSAEEKKKAEPKPAACKSMKAEADCTARNDCGWVQASVNKKTGKETRKAYCRTKPKSSKKAA
Ga0307471_1037819791	3300032180	Hardwood Forest Soil	MSNVLNRSLGIGAAAIVFAALAFGGVSAEEKKKAAEPKVAACKTMTAEADCTARNDCGWVHASVDKKSGKEKRKAYCRSKPK
Ga0370546_054512_255_515	3300034681	Soil	MSNALNRSLAIGAAAIVFAALAYGGVSAEEKKKAAEPKPAACKTLTADADCTARSDCGWVQASVDKKTGKEKRKAYCRTKPKSKKA
Ga0373959_0098071_2_250	3300034820	Rhizosphere Soil	MSNVLNRSLAIGAAAIVFAALAYGGVSAEEKKKAEPKPAACKTMTAEADCTARTDCSWVKASIDAKTGKEKRKAYCRSKPKSK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F103014

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences