Metagenome Family F103013

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F103013
Family Type	Metagenome
Number of Sequences	101
Average Sequence Length	61 residues
Representative Sequence	MNRIRIGRPGARSEHPWPGALSPGPPDPGIVRATGARTGRAVRNGARDMMAWAGRRLWRA
Number of Associated Samples	91
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	100.00 %
% of genes near scaffold ends (potentially truncated)	95.05 %
% of genes from short scaffolds (< 2000 bps)	93.07 %
Associated GOLD sequencing projects	90
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.38

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (57.426 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (36.634 % of family members)
Environment Ontology (ENVO)	Unclassified (41.584 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (35.644 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 36.36% β-sheet: 0.00% Coil/Unstructured: 63.64%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.38
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.38
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF00196	GerE	36.63
PF07549	Sec_GG	2.97
PF01381	HTH_3	1.98
PF01590	GAF	1.98
PF08044	DUF1707	0.99
PF00891	Methyltransf_2	0.99
PF00931	NB-ARC	0.99
PF02371	Transposase_20	0.99
PF03747	ADP_ribosyl_GH	0.99
PF07077	DUF1345	0.99
PF00400	WD40	0.99
PF00589	Phage_integrase	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG0341	Preprotein translocase subunit SecF	Intracellular trafficking, secretion, and vesicular transport [U]	2.97
COG0342	Preprotein translocase subunit SecD	Intracellular trafficking, secretion, and vesicular transport [U]	2.97
COG1397	ADP-ribosylglycohydrolase	Posttranslational modification, protein turnover, chaperones [O]	0.99
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.99
COG4291	Uncharacterized membrane protein	Function unknown [S]	0.99

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	57.43 %
Unclassified	root	N/A	42.57 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	57.43 %
Unclassified	root	N/A	42.57 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	57.43 %
Unclassified	root	N/A	42.57 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	55.45 %
Unclassified	root	N/A	42.57 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	55.45 %
Unclassified	root	N/A	42.57 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	53.47 %
Unclassified	root	N/A	42.57 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.57 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	29.70 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	3.96 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	1.98 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.99 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.99 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.57 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	29.70 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3.96 %
Intrasporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae	1.98 %
Kribbellaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae	0.99 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.99 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.57 %
Amycolatopsis	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis	29.70 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3.96 %
Tetrasphaera	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Tetrasphaera	1.98 %
Kribbella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella	0.99 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.99 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.57 %
unclassified Amycolatopsis	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → unclassified Amycolatopsis	29.70 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3.96 %
Tetrasphaera japonica	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Tetrasphaera → Tetrasphaera japonica	1.98 %
Kribbella pittospori	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella → Kribbella pittospori	0.99 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.99 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.57 %
Amycolatopsis sp. FDAARGOS 1241	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → unclassified Amycolatopsis → Amycolatopsis sp. FDAARGOS 1241	29.70 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3.96 %
Tetrasphaera japonica T1-X7	strain	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Tetrasphaera → Tetrasphaera japonica → Tetrasphaera japonica T1-X7	1.98 %
Kribbella pittospori	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella → Kribbella pittospori	0.99 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.99 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.99 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004114\|Ga0062593_103307966	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	517	Open in IMG/M
3300005328\|Ga0070676_11491535	Not Available	521	Open in IMG/M
3300005332\|Ga0066388_105201328	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	660	Open in IMG/M
3300005338\|Ga0068868_100155997	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1883	Open in IMG/M
3300005435\|Ga0070714_100279552	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1550	Open in IMG/M
3300005435\|Ga0070714_100324831	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → unclassified Amycolatopsis → Amycolatopsis sp. FDAARGOS 1241	1440	Open in IMG/M
3300005436\|Ga0070713_100129274	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2225	Open in IMG/M
3300005436\|Ga0070713_100510180	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1135	Open in IMG/M
3300005440\|Ga0070705_100434662	All Organisms → cellular organisms → Bacteria	981	Open in IMG/M
3300005444\|Ga0070694_101426512	Not Available	585	Open in IMG/M
3300005455\|Ga0070663_101412273	Not Available	617	Open in IMG/M
3300005456\|Ga0070678_100568468	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1008	Open in IMG/M
3300005468\|Ga0070707_101700601	Not Available	598	Open in IMG/M
3300005518\|Ga0070699_101065363	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → unclassified Amycolatopsis → Amycolatopsis sp. FDAARGOS 1241	742	Open in IMG/M
3300005564\|Ga0070664_101754369	Not Available	589	Open in IMG/M
3300005602\|Ga0070762_10888393	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → unclassified Amycolatopsis → Amycolatopsis sp. FDAARGOS 1241	607	Open in IMG/M
3300005610\|Ga0070763_10177342	Not Available	1126	Open in IMG/M
3300006755\|Ga0079222_12530333	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	516	Open in IMG/M
3300006755\|Ga0079222_12650813	Not Available	504	Open in IMG/M
3300006806\|Ga0079220_11364337	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	599	Open in IMG/M
3300009092\|Ga0105250_10563908	Not Available	524	Open in IMG/M
3300009148\|Ga0105243_11111591	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → unclassified Amycolatopsis → Amycolatopsis sp. FDAARGOS 1241	799	Open in IMG/M
3300010360\|Ga0126372_12134489	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → unclassified Amycolatopsis → Amycolatopsis sp. FDAARGOS 1241	608	Open in IMG/M
3300010366\|Ga0126379_11695335	All Organisms → cellular organisms → Bacteria	737	Open in IMG/M
3300010366\|Ga0126379_12181978	Not Available	655	Open in IMG/M
3300010371\|Ga0134125_10356124	Not Available	1624	Open in IMG/M
3300010376\|Ga0126381_102046247	Not Available	825	Open in IMG/M
3300010396\|Ga0134126_12720230	Not Available	537	Open in IMG/M
3300010403\|Ga0134123_10866230	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	905	Open in IMG/M
3300012207\|Ga0137381_10625409	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → unclassified Amycolatopsis → Amycolatopsis sp. FDAARGOS 1241	938	Open in IMG/M
3300012351\|Ga0137386_10304585	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella → Kribbella pittospori	1147	Open in IMG/M
3300012360\|Ga0137375_10670899	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → unclassified Amycolatopsis → Amycolatopsis sp. FDAARGOS 1241	851	Open in IMG/M
3300012499\|Ga0157350_1028682	Not Available	606	Open in IMG/M
3300012515\|Ga0157338_1037278	Not Available	647	Open in IMG/M
3300012958\|Ga0164299_11493094	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Tetrasphaera → Tetrasphaera japonica → Tetrasphaera japonica T1-X7	527	Open in IMG/M
3300012971\|Ga0126369_13178722	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → unclassified Amycolatopsis → Amycolatopsis sp. FDAARGOS 1241	538	Open in IMG/M
3300013307\|Ga0157372_11939422	Not Available	677	Open in IMG/M
3300014969\|Ga0157376_10012163	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6377	Open in IMG/M
3300015374\|Ga0132255_101278027	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1107	Open in IMG/M
3300016294\|Ga0182041_10721382	Not Available	885	Open in IMG/M
3300016319\|Ga0182033_11540043	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	600	Open in IMG/M
3300016357\|Ga0182032_11135321	Not Available	671	Open in IMG/M
3300016422\|Ga0182039_11512877	Not Available	611	Open in IMG/M
3300016422\|Ga0182039_12205021	Not Available	508	Open in IMG/M
3300017926\|Ga0187807_1044993	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1367	Open in IMG/M
3300017937\|Ga0187809_10297827	Not Available	594	Open in IMG/M
3300017943\|Ga0187819_10080125	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1948	Open in IMG/M
3300017947\|Ga0187785_10310288	Not Available	729	Open in IMG/M
3300017959\|Ga0187779_11245691	Not Available	525	Open in IMG/M
3300017974\|Ga0187777_10682696	Not Available	728	Open in IMG/M
3300021170\|Ga0210400_11494954	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → unclassified Amycolatopsis → Amycolatopsis sp. FDAARGOS 1241	536	Open in IMG/M
3300021388\|Ga0213875_10193114	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → unclassified Amycolatopsis → Amycolatopsis sp. FDAARGOS 1241	957	Open in IMG/M
3300021432\|Ga0210384_11271354	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → unclassified Amycolatopsis → Amycolatopsis sp. FDAARGOS 1241	641	Open in IMG/M
3300021479\|Ga0210410_11483094	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → unclassified Amycolatopsis → Amycolatopsis sp. FDAARGOS 1241	571	Open in IMG/M
3300024251\|Ga0247679_1034797	Not Available	848	Open in IMG/M
3300025898\|Ga0207692_10258411	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1046	Open in IMG/M
3300025916\|Ga0207663_10721721	Not Available	790	Open in IMG/M
3300025927\|Ga0207687_10300489	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1293	Open in IMG/M
3300025929\|Ga0207664_11483457	Not Available	600	Open in IMG/M
3300027821\|Ga0209811_10128157	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → unclassified Amycolatopsis → Amycolatopsis sp. FDAARGOS 1241	929	Open in IMG/M
3300028906\|Ga0308309_11489282	Not Available	578	Open in IMG/M
3300031546\|Ga0318538_10401281	Not Available	742	Open in IMG/M
3300031564\|Ga0318573_10062903	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1838	Open in IMG/M
3300031572\|Ga0318515_10602507	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → unclassified Amycolatopsis → Amycolatopsis sp. FDAARGOS 1241	584	Open in IMG/M
3300031573\|Ga0310915_10959380	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → unclassified Amycolatopsis → Amycolatopsis sp. FDAARGOS 1241	598	Open in IMG/M
3300031681\|Ga0318572_10500526	Not Available	724	Open in IMG/M
3300031713\|Ga0318496_10095406	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → unclassified Amycolatopsis → Amycolatopsis sp. FDAARGOS 1241	1592	Open in IMG/M
3300031713\|Ga0318496_10320894	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → unclassified Amycolatopsis → Amycolatopsis sp. FDAARGOS 1241	855	Open in IMG/M
3300031724\|Ga0318500_10436308	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → unclassified Amycolatopsis → Amycolatopsis sp. FDAARGOS 1241	654	Open in IMG/M
3300031724\|Ga0318500_10550933	Not Available	582	Open in IMG/M
3300031747\|Ga0318502_10071555	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → unclassified Amycolatopsis → Amycolatopsis sp. FDAARGOS 1241	1872	Open in IMG/M
3300031748\|Ga0318492_10024079	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2681	Open in IMG/M
3300031748\|Ga0318492_10701464	Not Available	542	Open in IMG/M
3300031751\|Ga0318494_10772616	Not Available	563	Open in IMG/M
3300031771\|Ga0318546_10599660	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → unclassified Amycolatopsis → Amycolatopsis sp. FDAARGOS 1241	775	Open in IMG/M
3300031778\|Ga0318498_10228740	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → unclassified Amycolatopsis → Amycolatopsis sp. FDAARGOS 1241	841	Open in IMG/M
3300031781\|Ga0318547_10880184	Not Available	559	Open in IMG/M
3300031796\|Ga0318576_10267856	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	806	Open in IMG/M
3300031799\|Ga0318565_10191046	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → unclassified Amycolatopsis → Amycolatopsis sp. FDAARGOS 1241	996	Open in IMG/M
3300031805\|Ga0318497_10020236	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3223	Open in IMG/M
3300031805\|Ga0318497_10677508	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → unclassified Amycolatopsis → Amycolatopsis sp. FDAARGOS 1241	578	Open in IMG/M
3300031819\|Ga0318568_10415546	Not Available	838	Open in IMG/M
3300031821\|Ga0318567_10517994	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → unclassified Amycolatopsis → Amycolatopsis sp. FDAARGOS 1241	677	Open in IMG/M
3300031845\|Ga0318511_10016667	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Tetrasphaera → Tetrasphaera japonica → Tetrasphaera japonica T1-X7	2619	Open in IMG/M
3300031846\|Ga0318512_10422025	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → unclassified Amycolatopsis → Amycolatopsis sp. FDAARGOS 1241	671	Open in IMG/M
3300031896\|Ga0318551_10222577	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1049	Open in IMG/M
3300031896\|Ga0318551_10858484	Not Available	529	Open in IMG/M
3300031897\|Ga0318520_10627950	Not Available	669	Open in IMG/M
3300031910\|Ga0306923_11050698	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → unclassified Amycolatopsis → Amycolatopsis sp. FDAARGOS 1241	881	Open in IMG/M
3300031912\|Ga0306921_10990785	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → unclassified Amycolatopsis → Amycolatopsis sp. FDAARGOS 1241	949	Open in IMG/M
3300031945\|Ga0310913_11150975	Not Available	541	Open in IMG/M
3300031946\|Ga0310910_11520719	Not Available	513	Open in IMG/M
3300032001\|Ga0306922_11053852	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → unclassified Amycolatopsis → Amycolatopsis sp. FDAARGOS 1241	836	Open in IMG/M
3300032042\|Ga0318545_10072838	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1183	Open in IMG/M
3300032067\|Ga0318524_10523170	Not Available	623	Open in IMG/M
3300032261\|Ga0306920_104139359	Not Available	524	Open in IMG/M
3300032770\|Ga0335085_10120207	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → unclassified Amycolatopsis → Amycolatopsis sp. FDAARGOS 1241	3354	Open in IMG/M
3300032828\|Ga0335080_11829666	Not Available	592	Open in IMG/M
3300033289\|Ga0310914_10812641	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → unclassified Amycolatopsis → Amycolatopsis sp. FDAARGOS 1241	833	Open in IMG/M
3300034818\|Ga0373950_0097364	Not Available	631	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	86.14%
Host-Associated	Host-Associated	13.86%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	83.17%
Plants	Host-Associated → Plants	13.86%
Aquatic	Environmental → Aquatic	2.97%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	83.17%
Rhizosphere	Host-Associated → Plants → Rhizosphere	8.91%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.96%
Freshwater	Environmental → Aquatic → Freshwater	2.97%
Roots	Host-Associated → Plants → Roots	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	63.37%
Loam	Environmental → Terrestrial → Soil → Loam	14.85%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.95%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.95%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.96%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.97%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.99%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.99%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	45.54%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	13.86%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	10.89%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.95%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.95%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.96%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.96%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.97%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.99%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.99%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	36.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	8.91%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	7.92%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.95%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.97%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.97%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.97%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.97%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.97%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	2.97%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	2.97%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.99%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.99%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.99%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.99%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.99%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.99%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.99%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.99%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	0.99%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.99%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.99%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.99%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.99%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.99%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300009092	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012499	Unplanted soil (control) microbial communities from North Carolina - M.Soil.2.yng.030610	Environmental	Open in IMG/M
3300012515	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.7.yng.070610	Host-Associated	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017926	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_2	Environmental	Open in IMG/M
3300017937	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_4	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017947	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MG	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021388	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8	Host-Associated	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300024251	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK20	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300027821	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032042	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26	Environmental	Open in IMG/M
3300032067	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300034818	Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_3	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0062593_1033079661	3300004114	Soil	MNRIRIGRPGARSEHRWPGTLSPGPPDPGIVRATGARTGRAVRNGARDMMAWAGRRLWAA
Ga0070676_114915351	3300005328	Miscanthus Rhizosphere	MNRIRIGRPGARSEHRWPGALSPGPPDPGIVRATGARTGRAVRNGARDMMAWAGRRL
Ga0066388_1052013282	3300005332	Tropical Forest Soil	MNRIRIGRPRGRSEHRWPGALSPGPPDPGIAWATGARTGRAVRNGARDMMAWAGRRLWL
Ga0068868_1001559975	3300005338	Miscanthus Rhizosphere	MNRIRIGRPGARSEHRWPGALSPSPPDPAIVRAAGARTGRAVRNSARDMMAWAGRRLWPAVRTVIRAVRLAHDEQVRMWE
Ga0070714_1002795522	3300005435	Agricultural Soil	MNRIRIGRPGARSGRPWPAARSPGLPGPDIVRATGARADSTVRNAARHMMAWAGRRLWS
Ga0070714_1003248311	3300005435	Agricultural Soil	MNRIRIGRWGPAANAGGPGHLSSRPPDPGIVWATGAHAGRAARNGAPDMMAWAGRRLWLVVRTVI
Ga0070713_1001292741	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MNRIRIGRPGARSEHPWPGALSPGPPDPGIVRATGARTGRAVRNGARDMMAW
Ga0070713_1005101802	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MNRIRIGRPGGRSEHRWPGALSPGPPDPGIVRATGARTGRAVRNGARDMMAWAGRRLR
Ga0070705_1004346623	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MNRIRIGRPGARSERPWPGGLSPDPPDPDIVRATGARPDCAFRKAARDMMAWAGGR
Ga0070694_1014265121	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MNRIRIGRPGARSEHPWPGALSPGPPDPGIVRATGARTGRAVRNGARDMMAWAGRRLWRA
Ga0070663_1014122731	3300005455	Corn Rhizosphere	MNRIRIGRPGARSEHRWPGALSPSPPDPAIVRAAGARTGRAVRNSARDMMAWAGRR
Ga0070678_1005684682	3300005456	Miscanthus Rhizosphere	MNRIRIGRPGARSEHRWPGALSPSPPDPAIVRAAGARTGRAVRNSARDMMAWAGRRLWPAVRTVIRAVRLAHDEQVRMWEC
Ga0070707_1017006012	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MNRIRIRRSGARSGRPRPGARSPGLPDPDLVRATGARADSTVRNAARHMMAWAGRRLW
Ga0070699_1010653631	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MNRIRIGRPGARSERPWPGGLSPDPPDPDIVRATGARPDCAFRKAARDMMAWAGGRLWLV
Ga0070664_1017543692	3300005564	Corn Rhizosphere	MNRIRIGRPGARSEHPWPGAPSPDPPDPDIVRATGARADHALRTAGRDMIAWAGRCLWLVVRTVIR
Ga0070762_108883932	3300005602	Soil	MNRIRIGRPGARSERRWPEALSPDAPDPDVVRATGARSGRAFRKAGREMMAWAGRRLWLA
Ga0070763_101773421	3300005610	Soil	MNRIRIGRPRAPALSPDPPDPDIVRAKGARSGRAFRKGARDMMAWAGRRLWLAGW*
Ga0079222_125303332	3300006755	Agricultural Soil	MNRIRIGRPGGRSEHRWSGALSPGPPDPGIAWATGTRTGRAVRDGAREVMAWAGRRLWLA
Ga0079222_126508131	3300006755	Agricultural Soil	MNRIRIGRPGARSGHPWPGALSPHPPDPGTGRATGARADRAFRNGARGI
Ga0079220_113643372	3300006806	Agricultural Soil	MNRIRIRRPGARSGRGRPWPGALSPDPPDSDIVRATGARPDCAFRKAARDMMAWACRCLWLVVRTAIRAVQIAHH
Ga0105250_105639081	3300009092	Switchgrass Rhizosphere	MNRIRIGRPGARSEHRWPGALSPSPPDPAIVRAAGARTGRAVRNSARDLMAWAGRRLWPAVRTVIRA
Ga0105243_111115911	3300009148	Miscanthus Rhizosphere	MNRIRIGRPGARSERPWPGTPSPGPPDPDIVRATGARPGRAFRKAARDMMAWAGGRLWVV
Ga0126372_121344891	3300010360	Tropical Forest Soil	MNRIRVGRPEARSERPWPGALSPGPPDPGTVRATGARADRTVRKGARDMMA
Ga0126379_116953353	3300010366	Tropical Forest Soil	MNCIRIGRPRARSERPSPEALSPGPPDPYIVRANGARADRAVRNGARDMMAWAGRRLW
Ga0126379_121819781	3300010366	Tropical Forest Soil	MNRIRIGRPGARSERPRPLALPPGPPDPGIARATGARADRAVRNAARDMMAWAG
Ga0134125_103561241	3300010371	Terrestrial Soil	MNRIRIGRPGARSEHRWPGALSPGPPDPGIVRATGARTGRAVRNGARDMMAWAGRR
Ga0126381_1020462472	3300010376	Tropical Forest Soil	MNRIRIRRPKARSERPWPGALSPDPPGPDIARARGARADRSSRQGARDMMAWAGRR
Ga0134126_127202301	3300010396	Terrestrial Soil	MNRIRIGRPGARSGRRWPAARSPGLPGPDIVRATGARADSTVRNAARHMMAWA
Ga0134123_108662302	3300010403	Terrestrial Soil	MNRIRIGRPGARSEHRWPGALSPGPPDPGIVRATGARTGRAVRNGARDMMAWAGRRLRAAVRT
Ga0137381_106254092	3300012207	Vadose Zone Soil	MNRIRIGRPAARSERRWPGALSPDPPDPDVVRATGARSGRAFRKAGREMMAWA
Ga0137386_103045851	3300012351	Vadose Zone Soil	MKRIHTGRRRAPSERPWPEAVSPDPRDPDIVRGHGTRADRAFRKGSQEMIA
Ga0137375_106708992	3300012360	Vadose Zone Soil	MNRIRIGRPGARGERLWPGALSPDPRDPGIVRATGARPDCAFRKAARDMMAWAGGRLWLVVRTAIRAVGIA
Ga0157350_10286821	3300012499	Unplanted Soil	MNRIRIGRPGARSEHRWPGALSPGPPDPGIVRATGARTGLAVRNGARDMMAWAG
Ga0157338_10372781	3300012515	Arabidopsis Rhizosphere	MNRIRIGRPGARSERPWPGGLSPGPPDPDIVRATGARAGRAFRNGARDMMAWAGRLLWLAVRT
Ga0164299_114930942	3300012958	Soil	MNRIRIGRPGARSERPWPGGLSPDPPDPDIVRATGARPDCAFRKAARDMMAWAGGRLWLVVR
Ga0126369_131787221	3300012971	Tropical Forest Soil	MNRIRVGRREARSERPWPGALSPGPPDPGTVRATDARADRAVRKGARDMMAWAGRCLWLAAR
Ga0157372_119394221	3300013307	Corn Rhizosphere	MNRIRIGRPGARSEHRWPGALSPGPPDPGIVRATGARTGRAVRNGARDMMAWAGRRLWAAVRTVIRAVR
Ga0157376_100121631	3300014969	Miscanthus Rhizosphere	MNRIRIGRPGARSEHRWPGALSPGPPDPGIVRATDARTGRAVRNGARDLMAS
Ga0132255_1012780271	3300015374	Arabidopsis Rhizosphere	MNRIRIGRPGARSGRPWPAARSPGLPGPDIVRATGARADSTVRNAARHMMAWAGRRPWSAGRAVIRAVAMAHDG
Ga0182041_107213822	3300016294	Soil	MNRIRIRRPRARSERPWPGAPPPDPDSVRASAARADRAVGNGDLGMMAWAGRRLRLAVR
Ga0182033_115400431	3300016319	Soil	MNPIRIRRPEARNGRPRPGALPPGPPDPGIVRATSARANRAARNGDRGLLAW
Ga0182032_111353211	3300016357	Soil	MNRIRIGRPGARSERPRPGALPPGPPDPGIVRATGARADRAVRNGARAMLAWAGRCLWLA
Ga0182039_115128771	3300016422	Soil	MNRIRIGRPGARSGRPWPGAPSPGPSVPGIAPATGARADHAAGNGARDMMARAGWRLWLAIRTVIHAVAMA
Ga0182039_122050211	3300016422	Soil	MNRIRIGRPGARSARPRPGALSPSPPDPGIVRATGARADRAAGKGARDMLAWAGRCLWPAAR
Ga0187807_10449932	3300017926	Freshwater Sediment	MNRIRIGRPRARSQRPWPGHSPSDPPDPDIVRAKGARADRAVREGTRDMMARVGRHLWRAAR
Ga0187809_102978271	3300017937	Freshwater Sediment	MNRIRIGRPGARSGRPWPGARSPDPPYPGIVRATGAGADRAVRNAARDMMAWAGRRLWLAVRTVIRAVKMAHH
Ga0187819_100801253	3300017943	Freshwater Sediment	MSRIRIRRPRARRERPWPRALSADPPGPDIVRARGARADRAFQEDARDMMAWAGRRLWLAVRTVI
Ga0187785_103102881	3300017947	Tropical Peatland	MNRIRIGRPGARSERPWPAAPPPGRPDPGIVRATGARADRAFYKGARVILAWAGRCLWLVVRTVIRAA
Ga0187779_112456911	3300017959	Tropical Peatland	MNRIRIRRPRARSEGPWPRALSPDPPGPDIVRATGARADRAFRKGARELMAWAGRRLW
Ga0187777_106826962	3300017974	Tropical Peatland	MNSIRIRRPRARSERPWPWALSLDPPDPDTARATGARADRAFRKGARDMITWTGRRAYGWLAAR
Ga0210400_114949542	3300021170	Soil	MNRIRIGRPGAHSEHRWPEAPSPGPPDPGLVRATGVRAGRNGARAMMAWAGRCLWPAVRTVIRA
Ga0213875_101931141	3300021388	Plant Roots	MNRIRIGRPGARSGRPWPGALAPGPPDPDIARATGARADRAVRTAARDRMAW
Ga0210384_112713541	3300021432	Soil	MNRIRIGRPGARSERPWPGALSPGPPDPGIVRATGARPDCAFRKAARDMMAWVGGRLWLVVRTAIRAVGI
Ga0210410_114830942	3300021479	Soil	MNRIRIGRPGAHSEHRWPEAPSPGPPDPGLVRATGVRAGRNGARAMMAWAGRCLWPAVRTVIRAVRLAHDEQVRMWE
Ga0247679_10347971	3300024251	Soil	MNRIRIGRPGARSGRPWPAARSPGLPGPDIVRATGARADSTVRNAARHMMAWAGRRLWSAGRAVI
Ga0207692_102584112	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MNRIRIGRPGARSGRPWPAARSPGLPGPDIVRATGARADSTVRNAARHMMAWAGRRLWSAGRAVIRAVAMAHDGQVRM
Ga0207663_107217211	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MNRIRIGRPGARSEHPWPGALSPGPPDPGIVRATGARTGRAVRNGARDMMAWAGRRLWAAVRTVIRAVR
Ga0207687_103004893	3300025927	Miscanthus Rhizosphere	MNRIRIGRPGARSEHRWPGALSPSPPDPAIVRAAGARTGRAVRNSARDMMAWA
Ga0207664_114834572	3300025929	Agricultural Soil	MNRIRIGRPRARSERPWPGALSPDPRDPGIVRAKGARADRAFRKGGRDMI
Ga0209811_101281571	3300027821	Surface Soil	MNRIRIGRPGARSERPWPGTPSPGPPDPDIIRATGARPGRAFRKAARDMMAWAGGRLWVVVRTAIRAVA
Ga0308309_114892821	3300028906	Soil	MNRIRIGRPTPRSQRPWPGALLPDPPDPDIVRAKGARADRAVREGARDVMAWAGRRLWLAARAVI
Ga0318538_104012812	3300031546	Soil	MNRSRIGRPGARSGRPWPGALSPGPSHLGIVRATDARADRAVGKAARGMSAWAGRCLWLAVRTVIRAVKMAHHEQVY
Ga0318573_100629031	3300031564	Soil	MNRIRIGRPGARSERPRPGALPPGPPDPGIVRATGARADRAVRNGARAMLAWAGRCLW
Ga0318515_106025072	3300031572	Soil	MNRIRIGRPGARSGRPWPGALSPGPLDPGIVRARGARADRAVRNGARGMLSWADRCLWLAVRMVIRAVQMAHHEQVSA
Ga0310915_109593801	3300031573	Soil	MNRIRIGRPGARSEHRWPGAPSPGPPDPGLVRATGVRAGRNGARAMMAWAGRCLWPAVRTVIRAVRLAHDEQVR
Ga0318572_105005261	3300031681	Soil	MNRIRIARPGARSGRPWPAAPSPGLPGPDIVRATGARADSTVRNAARHMMAWAGRRLWSAGRAV
Ga0318496_100954063	3300031713	Soil	MNRIRIGRPGARSGRPRPGALSPGPPDPGIVRATGARADRAAGNGARGM
Ga0318496_103208942	3300031713	Soil	MNRIRIGRPGARSEHRWPGALSPGRPDPGIVRAIGARAGRAVRDGARDMMAWIGRRLWLAVRTVIRAVRLAHDEPVT
Ga0318500_104363082	3300031724	Soil	MNRIRIGRPGARSGRPWPGKLPPDPPDPGIVWATGARADRAFRTGAGDMLAWAGRC
Ga0318500_105509332	3300031724	Soil	MNRIRIARPGARSGRPWPAAPSPGLPGPDIVRATGARADSTVRNAARHMMAWAG
Ga0318502_100715552	3300031747	Soil	MNRIRIRRPRARTERPWPTALSPDPPGPGIVRATGARAYRAFRKGAQELMARAGRRRWLAVRTVI
Ga0318492_100240795	3300031748	Soil	MNRIRIGRPGARSEHRWPGALSPGRPDPGIVRAIGARAGRAVRDGARDMMAWIGRRLWLAVRTVIRAVRLAHDEQVRMWE
Ga0318492_107014641	3300031748	Soil	MNRIRIGRSRGRSERPRPGALWPDPPDSDVVRAKGARADRAVWAGARDMMAWAGRRL
Ga0318494_107726161	3300031751	Soil	MNRIRIGRPRARSGRPWPGALSPDPPDPDIARARGARADRAVRNGARDMMA
Ga0318546_105996601	3300031771	Soil	MNRIRIKRPTARSGRPWSWALSPGPPDPHTARAAGARADRAFRNGARD
Ga0318498_102287402	3300031778	Soil	MNPIRIRRPEARNGRPRPGALPPGPPDPGIVRATSARANRAARNGDRGLLAWAGRRLWLAARIV
Ga0318547_108801841	3300031781	Soil	MNRIRIGRPGARSGRPWPGALSPDQRGPGVVRATGARTDRTVRTAARAMLAWAGRRLWLAVRTVIRVVAMAHHE
Ga0318576_102678562	3300031796	Soil	MNRIRIGRPGARSERPRPGALPPGPPDPGIVRATGARADRAVRNGARAMLAWA
Ga0318565_101910462	3300031799	Soil	MNRLRIRRPGARSERPWPGALSPGPSVPGIVRATGARAGHASREAAGNMMAWAGRCLWLAVRAVIRAGRM
Ga0318497_100202365	3300031805	Soil	MNRSRIGRPGARSGRPWPGVPSPGPPDPGIARATGARADRAVRNGARDMMA
Ga0318497_106775082	3300031805	Soil	MNRIRIKRPTARSGRPWSWALSPGPPDPHTARAAGARADRAFRNGARDM
Ga0318568_104155461	3300031819	Soil	MNRSRIGRPGARSGRPWPGALSPGPSHLGIVRATDARADRAVGKAARGMSAWAGRCLWL
Ga0318567_105179942	3300031821	Soil	MNRIRIGRPGARSEHRWPGALSPGRPDPGIVRAIGARAGRAVRDGARD
Ga0318511_100166672	3300031845	Soil	MNRIRIGRPGARSEHRWPGALSPGRPDPGIVRAIGARAGRAVRDGARDMMAWIGRRLWLAVRTVIRAVRLAHDEQVRMWEC
Ga0318512_104220251	3300031846	Soil	MNRIRIGRPGARSEHRWPGALSPGRPDPGIVRAIGARAGRAVRDGARDM
Ga0318551_102225771	3300031896	Soil	MNRIRIARPGARSGRPCPAAPSPGLPSPDIVRATGARADSTVRNAARHMMAWAGRRLWSAGRAVIRAV
Ga0318551_108584841	3300031896	Soil	MNRIRIGRPGARSGRPWPGALSPGPLDPGIVRARGARADRAVRNGARGMLSWADRCLWLAVRMVIRAVQMAH
Ga0318520_106279501	3300031897	Soil	MNRIRIGRAGARSGRRGPGAPSPGPPEPGIVRATGAGADRAVRQAARHMLAWTGRGLRLALRTVIRAVA
Ga0306923_110506981	3300031910	Soil	MNRIRIGRPAARSRRPWPGAHSPGPPDPGIVRATGARADRAVGKGARGMP
Ga0306921_109907851	3300031912	Soil	MNRIRIGRPGARSGRPWPGAPSPSPPDPGIVRATGARTDRAAGKGARDMLAWAGRCLWPAARPVIRAVQMAHHEQ
Ga0310913_111509751	3300031945	Soil	MNRIRIGRPGARSARPRPGALSPSPPDPGIVRATGARADRAAGKGARDMLAWAGRCLWPAARTVIRAVQMAHHEQV
Ga0310910_115207192	3300031946	Soil	MNRIRIGRPRARSERPWPGALWPDPRDPEILRVRGTRADRAFWKPARDMMAWAGRRLWLA
Ga0306922_110538521	3300032001	Soil	MNRIRIGRPGARSEHRWPGAPSPGPPDPGLVRATGVRAGRNGARAMMAWA
Ga0318545_100728382	3300032042	Soil	MNRIRIGRPGARSERPRPGALPPGPPDPGIVRATGARADRAVRNGARAMLAWAGRCLWLAVRTV
Ga0318524_105231701	3300032067	Soil	MNRIRIGRPGARSERPWPRALSLGPPDPGIVRATGARADRAVGKAARDMMAWAGRRLWL
Ga0318553_103007671	3300032068	Soil	MNRSGIGRSGARSERRWPGALSPGLRDPGMVRATGARADRAARTMPG
Ga0306920_1041393591	3300032261	Soil	MNRIRIGRPGARSERPRPGALSLDPPDADIGRASGTRSDRTFRKDAQDLMAWAGRRLWLAVRTVIRAVR
Ga0335085_101202072	3300032770	Soil	MNRIGIGRPGARSGRPWPGALSPDPPDPDIARATGARPDCAFRKAARDMIGT
Ga0335080_118296661	3300032828	Soil	MNHIRIGRPRARSERPWPEAPSPGSPDPDIVQSTGASVDRAVRNGARVMMAWAGRRLWLAVRMVI
Ga0310914_108126412	3300033289	Soil	MNRIRIGRPGARSEHRWPGALSPGRPDPGIVRAIGARAGRAVRDGARDMMAWIGRRLWLAVRTVIR
Ga0373950_0097364_428_631	3300034818	Rhizosphere Soil	MNRIRIGRPGARSEHRWPGALSPGPPDPGIVRATGARTGRAVRNGARDMMAWAGRRLWAAVRTVIRAV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F103013

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences