NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F103012

Metagenome / Metatranscriptome Family F103012

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F103012
Family Type Metagenome / Metatranscriptome
Number of Sequences 101
Average Sequence Length 43 residues
Representative Sequence METILISLCIAISGGVIGYIFGYRHGSGDMDRTYKDVYNIKEY
Number of Associated Samples 81
Number of Associated Scaffolds 101

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 70.30 %
% of genes near scaffold ends (potentially truncated) 21.78 %
% of genes from short scaffolds (< 2000 bps) 73.27 %
Associated GOLD sequencing projects 69
AlphaFold2 3D model prediction Yes
3D model pTM-score0.38

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (55.446 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine
(17.822 % of family members)
Environment Ontology (ENVO) Unclassified
(81.188 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(94.059 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 50.70%    β-sheet: 0.00%    Coil/Unstructured: 49.30%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.38
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 101 Family Scaffolds
PF00004AAA 5.94
PF12708Pectate_lyase_3 0.99
PF00462Glutaredoxin 0.99
PF06568DUF1127 0.99
PF027395_3_exonuc_N 0.99
PF00438S-AdoMet_synt_N 0.99
PF03783CsgG 0.99
PF13455MUG113 0.99
PF02773S-AdoMet_synt_C 0.99
PF04304DUF454 0.99
PF01653DNA_ligase_aden 0.99
PF00149Metallophos 0.99
PF10431ClpB_D2-small 0.99
PF03215Rad17 0.99
PF06941NT5C 0.99
PF03796DnaB_C 0.99
PF13186SPASM 0.99
PF01192RNA_pol_Rpb6 0.99

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 101 Family Scaffolds
COG0192S-adenosylmethionine synthetaseCoenzyme transport and metabolism [H] 1.98
COG02585'-3' exonuclease Xni/ExoIX (flap endonuclease)Replication, recombination and repair [L] 0.99
COG0272NAD-dependent DNA ligaseReplication, recombination and repair [L] 0.99
COG0305Replicative DNA helicaseReplication, recombination and repair [L] 0.99
COG1066DNA repair protein RadA/Sms, contains AAA+ ATPase domainReplication, recombination and repair [L] 0.99
COG1462Curli biogenesis system outer membrane secretion channel CsgGCell wall/membrane/envelope biogenesis [M] 0.99
COG1758DNA-directed RNA polymerase, subunit K/omegaTranscription [K] 0.99
COG2832Uncharacterized membrane protein YbaN, DUF454 familyFunction unknown [S] 0.99
COG45025'(3')-deoxyribonucleotidaseNucleotide transport and metabolism [F] 0.99
COG5457Uncharacterized conserved protein YjiS, DUF1127 familyFunction unknown [S] 0.99


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A55.45 %
All OrganismsrootAll Organisms44.55 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000116|DelMOSpr2010_c10161419All Organisms → cellular organisms → Bacteria756Open in IMG/M
3300000947|BBAY92_10133070Not Available656Open in IMG/M
3300001344|JGI20152J14361_10089978Not Available639Open in IMG/M
3300002230|M1t2FKB2103N_1253214Not Available747Open in IMG/M
3300003216|JGI26079J46598_1002206All Organisms → cellular organisms → Bacteria7546Open in IMG/M
3300003216|JGI26079J46598_1059856Not Available748Open in IMG/M
3300003345|JGI26080J50196_1074960Not Available602Open in IMG/M
3300003346|JGI26081J50195_1011130All Organisms → cellular organisms → Bacteria2277Open in IMG/M
3300003346|JGI26081J50195_1039717Not Available977Open in IMG/M
3300003346|JGI26081J50195_1095531Not Available562Open in IMG/M
3300003410|JGI26086J50260_1027570All Organisms → Viruses → Predicted Viral1579Open in IMG/M
3300003580|JGI26260J51721_1001877Not Available8471Open in IMG/M
3300003617|JGI26082J51739_10070137Not Available983Open in IMG/M
3300003620|JGI26273J51734_10007535All Organisms → Viruses → Predicted Viral4846Open in IMG/M
3300004097|Ga0055584_100954973Not Available897Open in IMG/M
3300004279|Ga0066605_10123120All Organisms → Viruses → Predicted Viral1052Open in IMG/M
3300005735|Ga0076923_107051All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria751Open in IMG/M
3300005837|Ga0078893_10648359Not Available5870Open in IMG/M
3300005913|Ga0075108_10073262Not Available1277Open in IMG/M
3300005942|Ga0070742_10040351Not Available1261Open in IMG/M
3300006789|Ga0098054_1008711Not Available4256Open in IMG/M
3300006925|Ga0098050_1130754Not Available636Open in IMG/M
3300007229|Ga0075468_10002250Not Available8242Open in IMG/M
3300007231|Ga0075469_10003366All Organisms → cellular organisms → Bacteria6980Open in IMG/M
3300007540|Ga0099847_1008671Not Available3385Open in IMG/M
3300009000|Ga0102960_1183789Not Available748Open in IMG/M
3300009071|Ga0115566_10000961Not Available24897Open in IMG/M
3300009071|Ga0115566_10141106All Organisms → Viruses → Predicted Viral1512Open in IMG/M
3300009071|Ga0115566_10320048Not Available910Open in IMG/M
3300009071|Ga0115566_10445748Not Available740Open in IMG/M
3300009071|Ga0115566_10654248Not Available585Open in IMG/M
3300009076|Ga0115550_1207971Not Available656Open in IMG/M
3300009142|Ga0102885_1166345All Organisms → cellular organisms → Bacteria541Open in IMG/M
3300009426|Ga0115547_1090577All Organisms → Viruses → Predicted Viral1017Open in IMG/M
3300009432|Ga0115005_10224841Not Available1467Open in IMG/M
3300009437|Ga0115556_1156463Not Available838Open in IMG/M
3300009440|Ga0115561_1173082Not Available834Open in IMG/M
3300009495|Ga0115571_1346712Not Available587Open in IMG/M
3300009496|Ga0115570_10047486All Organisms → Viruses → Predicted Viral2306Open in IMG/M
3300009507|Ga0115572_10157821Not Available1327Open in IMG/M
3300009507|Ga0115572_10465720Not Available703Open in IMG/M
3300010296|Ga0129348_1328028All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria509Open in IMG/M
3300012528|Ga0129352_10559557Not Available933Open in IMG/M
3300013010|Ga0129327_10003797Not Available8656Open in IMG/M
3300017713|Ga0181391_1028111All Organisms → Viruses → Predicted Viral1378Open in IMG/M
3300017727|Ga0181401_1010256Not Available2976Open in IMG/M
3300017742|Ga0181399_1046388Not Available1143Open in IMG/M
3300017742|Ga0181399_1058382All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → unclassified Porticoccaceae → Porticoccaceae bacterium995Open in IMG/M
3300017749|Ga0181392_1036407All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → unclassified Porticoccaceae → Porticoccaceae bacterium1535Open in IMG/M
3300017751|Ga0187219_1037385All Organisms → Viruses → Predicted Viral1664Open in IMG/M
3300017752|Ga0181400_1094613Not Available882Open in IMG/M
3300017753|Ga0181407_1066575Not Available929Open in IMG/M
3300017770|Ga0187217_1026113All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon2079Open in IMG/M
3300017770|Ga0187217_1050354All Organisms → Viruses → Predicted Viral1452Open in IMG/M
3300017782|Ga0181380_1034727Not Available1838Open in IMG/M
3300017786|Ga0181424_10176293Not Available911Open in IMG/M
3300017950|Ga0181607_10001290Not Available22498Open in IMG/M
3300020165|Ga0206125_10107245Not Available1174Open in IMG/M
3300020165|Ga0206125_10128876All Organisms → cellular organisms → Archaea1038Open in IMG/M
3300020165|Ga0206125_10129501All Organisms → Viruses → Predicted Viral1035Open in IMG/M
3300020166|Ga0206128_1006292Not Available8533Open in IMG/M
3300020166|Ga0206128_1008109Not Available7184Open in IMG/M
3300020166|Ga0206128_1293228All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon581Open in IMG/M
3300020175|Ga0206124_10120396Not Available1075Open in IMG/M
3300020182|Ga0206129_10074798All Organisms → Viruses → Predicted Viral1917Open in IMG/M
3300020182|Ga0206129_10210798All Organisms → cellular organisms → Bacteria850Open in IMG/M
3300020185|Ga0206131_10158061All Organisms → Viruses → Predicted Viral1176Open in IMG/M
3300020187|Ga0206130_10364335All Organisms → cellular organisms → Bacteria594Open in IMG/M
3300020438|Ga0211576_10170534All Organisms → Viruses → Predicted Viral1169Open in IMG/M
3300021085|Ga0206677_10056798All Organisms → cellular organisms → Bacteria2003Open in IMG/M
3300021335|Ga0213867_1010599All Organisms → Viruses → Predicted Viral3896Open in IMG/M
3300021365|Ga0206123_10040421All Organisms → cellular organisms → Bacteria2506Open in IMG/M
3300021365|Ga0206123_10352760Not Available615Open in IMG/M
3300021371|Ga0213863_10039675All Organisms → Viruses → Predicted Viral2522Open in IMG/M
3300021957|Ga0222717_10562989Not Available604Open in IMG/M
3300022067|Ga0196895_1012080Not Available935Open in IMG/M
(restricted) 3300023109|Ga0233432_10001971All Organisms → cellular organisms → Bacteria19385Open in IMG/M
(restricted) 3300023109|Ga0233432_10082045All Organisms → Viruses → Predicted Viral1878Open in IMG/M
3300023701|Ga0228685_1075802All Organisms → cellular organisms → Bacteria512Open in IMG/M
3300024346|Ga0244775_10042844Not Available3977Open in IMG/M
3300024346|Ga0244775_10776815Not Available767Open in IMG/M
3300025070|Ga0208667_1051293Not Available667Open in IMG/M
3300025085|Ga0208792_1003798All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon4075Open in IMG/M
3300025098|Ga0208434_1039764Not Available1069Open in IMG/M
3300025483|Ga0209557_1002396Not Available9663Open in IMG/M
3300025483|Ga0209557_1002402All Organisms → cellular organisms → Bacteria9655Open in IMG/M
3300025502|Ga0208903_1028175All Organisms → Viruses → Predicted Viral1604Open in IMG/M
3300025570|Ga0208660_1003790All Organisms → cellular organisms → Bacteria5721Open in IMG/M
3300025626|Ga0209716_1031469All Organisms → Viruses → Predicted Viral1956Open in IMG/M
3300025632|Ga0209194_1054791All Organisms → Viruses → Predicted Viral1127Open in IMG/M
3300025645|Ga0208643_1078279Not Available948Open in IMG/M
3300025701|Ga0209771_1059690Not Available1373Open in IMG/M
3300025704|Ga0209602_1135290Not Available813Open in IMG/M
3300025767|Ga0209137_1057748All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1787Open in IMG/M
3300025821|Ga0209600_1084841Not Available976Open in IMG/M
3300025869|Ga0209308_10064828All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1874Open in IMG/M
3300025870|Ga0209666_1304458Not Available629Open in IMG/M
3300025890|Ga0209631_10190160All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium TMED2141066Open in IMG/M
3300025890|Ga0209631_10444926Not Available591Open in IMG/M
3300026421|Ga0247569_1098439All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon505Open in IMG/M
3300027849|Ga0209712_10154791All Organisms → Viruses → Predicted Viral1311Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine17.82%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine14.85%
SeawaterEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Seawater12.87%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater11.88%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine7.92%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous6.93%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater3.96%
Pelagic MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine3.96%
EstuarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine2.97%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater1.98%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient1.98%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine1.98%
Saline LakeEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake1.98%
Marine Surface WaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water0.99%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater0.99%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine0.99%
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh0.99%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine0.99%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water0.99%
MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine0.99%
Pond WaterEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water0.99%
Macroalgal SurfaceHost-Associated → Algae → Green Algae → Ectosymbionts → Unclassified → Macroalgal Surface0.99%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000116Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010EnvironmentalOpen in IMG/M
3300000947Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY92Host-AssociatedOpen in IMG/M
3300001344Pelagic Microbial community sample from North Sea - COGITO 998_met_02EnvironmentalOpen in IMG/M
3300002230Marine microbial communities from the Baltic Sea - M1t2 FKB2 (103N)EnvironmentalOpen in IMG/M
3300003216Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_59LU_5_DNAEnvironmentalOpen in IMG/M
3300003345Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_90LU_22_DNAEnvironmentalOpen in IMG/M
3300003346Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_74LU_5_DNAEnvironmentalOpen in IMG/M
3300003410Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_153SG_22_DNAEnvironmentalOpen in IMG/M
3300003580Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI074_LV_120m_DNAEnvironmentalOpen in IMG/M
3300003617Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_105LU_22_DNAEnvironmentalOpen in IMG/M
3300003620Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_125m_DNAEnvironmentalOpen in IMG/M
3300004097Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - OSD3 (Helgoland) metaGEnvironmentalOpen in IMG/M
3300004279Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_10mEnvironmentalOpen in IMG/M
3300005735Seawater microbial communities from Vineyard Sound, MA, USA - control T0EnvironmentalOpen in IMG/M
3300005837Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18EnvironmentalOpen in IMG/M
3300005913Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UK1EnvironmentalOpen in IMG/M
3300005942Estuarine microbial communities from the Columbia River estuary, USA - metaG S.757EnvironmentalOpen in IMG/M
3300006789Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaGEnvironmentalOpen in IMG/M
3300006925Marine viral communities from the Subarctic Pacific Ocean - 14_ETSP_OMZ_AT15311 metaGEnvironmentalOpen in IMG/M
3300007229Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_<0.8_DNAEnvironmentalOpen in IMG/M
3300007231Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_>0.8_DNAEnvironmentalOpen in IMG/M
3300007540Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaGEnvironmentalOpen in IMG/M
3300009000Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_B_H2O_MGEnvironmentalOpen in IMG/M
3300009071Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405EnvironmentalOpen in IMG/M
3300009076Pelagic marine microbial communities from North Sea - COGITO_mtgs_100511EnvironmentalOpen in IMG/M
3300009142Estuarine microbial communities from the Columbia River estuary - metaG 1550B-3EnvironmentalOpen in IMG/M
3300009426Pelagic marine microbial communities from North Sea - COGITO_mtgs_100420EnvironmentalOpen in IMG/M
3300009432Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean - Greenland ARC118M MetagenomeEnvironmentalOpen in IMG/M
3300009437Pelagic marine microbial communities from North Sea - COGITO_mtgs_110414EnvironmentalOpen in IMG/M
3300009440Pelagic marine microbial communities from North Sea - COGITO_mtgs_110512EnvironmentalOpen in IMG/M
3300009495Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531EnvironmentalOpen in IMG/M
3300009496Pelagic marine microbial communities from North Sea - COGITO_mtgs_120524EnvironmentalOpen in IMG/M
3300009507Pelagic marine microbial communities from North Sea - COGITO_mtgs_120607EnvironmentalOpen in IMG/M
3300010296Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.8_DNAEnvironmentalOpen in IMG/M
3300012528Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.2_RNA1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300013010Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.8_DNAEnvironmentalOpen in IMG/M
3300017713Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 14 SPOT_SRF_2010-08-11EnvironmentalOpen in IMG/M
3300017727Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 24 SPOT_SRF_2011-07-20EnvironmentalOpen in IMG/M
3300017742Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 22 SPOT_SRF_2011-05-21EnvironmentalOpen in IMG/M
3300017749Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 15 SPOT_SRF_2010-09-15EnvironmentalOpen in IMG/M
3300017751Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 13 SPOT_SRF_2010-07-21 (version 2)EnvironmentalOpen in IMG/M
3300017752Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 23 SPOT_SRF_2011-06-22EnvironmentalOpen in IMG/M
3300017753Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 30 SPOT_SRF_2012-01-26EnvironmentalOpen in IMG/M
3300017770Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 15 SPOT_SRF_2010-09-15 (version 2)EnvironmentalOpen in IMG/M
3300017782Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 3 SPOT_SRF_2009-08-19EnvironmentalOpen in IMG/M
3300017786Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 47 SPOT_SRF_2013-09-18EnvironmentalOpen in IMG/M
3300017950Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300020165Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1EnvironmentalOpen in IMG/M
3300020166Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160426_1EnvironmentalOpen in IMG/M
3300020175Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160321_2EnvironmentalOpen in IMG/M
3300020182Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160502_2EnvironmentalOpen in IMG/M
3300020185Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1EnvironmentalOpen in IMG/M
3300020187Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160512_1EnvironmentalOpen in IMG/M
3300020438Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)EnvironmentalOpen in IMG/M
3300021085Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015EnvironmentalOpen in IMG/M
3300021335Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540EnvironmentalOpen in IMG/M
3300021365Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160316_1EnvironmentalOpen in IMG/M
3300021371Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO497EnvironmentalOpen in IMG/M
3300021957Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18DEnvironmentalOpen in IMG/M
3300022067Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 (v3)EnvironmentalOpen in IMG/M
3300023109 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_10_MGEnvironmentalOpen in IMG/M
3300023701Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 47R (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300024346Whole water sample coassemblyEnvironmentalOpen in IMG/M
3300025070Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025085Marine viral communities from the Subarctic Pacific Ocean - 14_ETSP_OMZ_AT15311 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025098Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025483Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI074_LV_120m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025502Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKJ (SPAdes)EnvironmentalOpen in IMG/M
3300025570Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025626Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531 (SPAdes)EnvironmentalOpen in IMG/M
3300025632Pelagic marine microbial communities from North Sea - COGITO_mtgs_100413 (SPAdes)EnvironmentalOpen in IMG/M
3300025645Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (SPAdes)EnvironmentalOpen in IMG/M
3300025701Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_59LU_5_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025704Pelagic marine microbial communities from North Sea - COGITO_mtgs_120524 (SPAdes)EnvironmentalOpen in IMG/M
3300025767Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_105LU_22_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025821Pelagic marine microbial communities from North Sea - COGITO_mtgs_110421 (SPAdes)EnvironmentalOpen in IMG/M
3300025869Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405 (SPAdes)EnvironmentalOpen in IMG/M
3300025870Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_125m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025890Pelagic Microbial community sample from North Sea - COGITO 998_met_08 (SPAdes)EnvironmentalOpen in IMG/M
3300026421Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 20R (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300027849Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean - Greenland ARC118M Metagenome (SPAdes)EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
DelMOSpr2010_1016141913300000116MarineMETILISLCIAISGGVIGYIFGYRHGSGDIDRIYKDVYDIKET*
BBAY92_1013307013300000947Macroalgal SurfaceMETILISLCIAISGGLIGYIFGYRHGSGDMDRAYKDVYNIGDH*
JGI20152J14361_1008997823300001344Pelagic MarineMETILISLCIAISGGVIGYIFGYRHGSGDIDRIYKDVYNIKET*
M1t2FKB2103N_125321443300002230MarineMETILIALCIAICGGLIGYLFGYRNGSNDIEQVYKDVYDIKDY*
JGI26079J46598_100220693300003216MarineMETILIALCIAICGGLIGYLFGYRTGSNDIEQVYKDVYDIKDY*
JGI26079J46598_105985623300003216MarineMETILISLCIAISGGVIGYIFGYRHGSGDVDRIYKDVYNIGDH*
JGI26080J50196_107496023300003345MarineMFETISISLCIAISGGVIGYIFGYRHGSGDIDRAYKDIYNIKDHS*
JGI26081J50195_101113063300003346MarineMETILISLCIAICGGVIGYIFGYRHGSGDVDRIYKDVYDIKEV*
JGI26081J50195_103971753300003346MarineMETILISLCIAVCGGVIGYIFGYRHGSSDMDRNYKEAYNIREV*
JGI26081J50195_109553113300003346MarineMEVIMISLCIAICGVIIGYIVGYNHGGKDMDRAYKDAYNIKDYR*
JGI26086J50260_102757063300003410MarineMETILISLXIAISGGVIGYIFGYRHGSGDVDRIYKDVYNIGDH*
JGI26260J51721_100187763300003580MarineMETILISLCIAICGGMIGFILGYRSGSGDMDRTYKDVYNITEN*
JGI26082J51739_1007013753300003617MarineMETILISLCIAVXGGVIGYIFGYRHGSSDMDRNYKEAYNIREV*
JGI26273J51734_10007535163300003620MarineMETILISXXIAICGGLIGFIFGYRXGSSDMDRNYREAYNIKDH*
Ga0055584_10095497323300004097Pelagic MarineMETILISLCIAVSGGVIGYIFGYRHGSSDMDRNYKDVYNIQEV*
Ga0066605_1012312053300004279MarineMKHLKWMMEPNMETILISLCIAICGGIIGFIFGYRSGSSDMDRNYKEAYNIKDY*
Ga0076923_10705123300005735MarineMETILISLCIAISGGVIGYIFGYRHGSGDMDRTYKDVYDIKEY*
Ga0078893_10648359133300005837Marine Surface WaterMETILISLCIAISGGVIGYIFGYRHGSGDMDRTYKDVYNIKEY*
Ga0075108_1007326263300005913Saline LakeMEIILTSVCIAICGAVIGWIVGYNQGSKDIEKIYKDVYHIKGY*
Ga0070742_1004035113300005942EstuarineETILISLCIAICGGVIGYIFGYRHGSGDVDRIYKDVYDIKEV*
Ga0098054_1008711103300006789MarineMETILISLCIAISGGVIGYIFGYRHGSGDMDRTYKDVYDIKQY*
Ga0098050_113075433300006925MarineMETILISLCIAISGGVIGYIFGYRHGSSDMDRTYKDVYDIKQY*
Ga0075468_1000225073300007229AqueousMETILISLCIAICGGIIGFIFGYRSGSSDIEQVYKDVYEHCIKDY*
Ga0075469_1000336653300007231AqueousMETILIALCIAICGGVIGYIFGYRSGSSDIEQVYKDVYEHCIKDY*
Ga0099847_100867183300007540AqueousMEVILTSLCIAISGGIIGWIVGYNQGSKDIDTIYKDVYDIKEV*
Ga0102960_118378943300009000Pond WaterMETILISLCIAICGGVIGYIFGYRHGSGDVDRIYK
Ga0115566_10000961373300009071Pelagic MarineMEPNMENILIALCIAISGGVIGYIFGYRHGSSDMDRNYKEAYNIKET*
Ga0115566_1014110643300009071Pelagic MarineMEVIMISLCIAICGVIIGYIVGYNHGSKDMDRAYKDAYNIKDYR*
Ga0115566_1032004853300009071Pelagic MarineENILIALCIAISGGVIGYIFGYRHGSGDMDRTYKDVYNIKEY*
Ga0115566_1044574843300009071Pelagic MarineMEHNMETILISLCIAISGGVIGYIFGYRHGSGDIDRIYKDVYNIKET*
Ga0115566_1065424833300009071Pelagic MarineMEPNMETILISLCIAISGGVIGYIFGYRHGSNDMDRNYKEAYNIKEF*
Ga0115550_120797133300009076Pelagic MarineMEPNMENILIALCIAISGGVIGYIFGYRHGSGDMDRTYKDVYNIKEY*
Ga0102885_116634533300009142EstuarineMETILISLCIAICGGVIGYIFGYRHGSGDVDRIYKDVY
Ga0115547_109057753300009426Pelagic MarineMEPNMETILISLCIAISGGVIGYIFGYRHGSGDIDRIYK
Ga0115005_1022484123300009432MarineMEIILSALCIAISGVIIGWIFGYNQGSEDIGNIYKDVYDIKEL*
Ga0115556_115646343300009437Pelagic MarineMEPNMETILISLCIAISGGVIGYIFGYRHGSGDIDRIYKDVYNIKET*
Ga0115561_117308263300009440Pelagic MarineMMEPNMENILIALCIAVSGGVIGYIFGYRHGSSDMDRNYKEAYNIKEF*
Ga0115571_134671223300009495Pelagic MarineMEPNMETILISLCIAISGGVIGYIFGYRHGSGDMDRNYREAYNIKDH*
Ga0115570_1004748663300009496Pelagic MarineMETILISLCIAISGGVIGYIFGYRHGSGDMDRNYREAYNIKDH*
Ga0115572_1015782133300009507Pelagic MarineMEVILTSLCIAICGGIIGWIVGYNQGSKDIDAIYKDVYNIKEV*
Ga0115572_1046572023300009507Pelagic MarineMENILIALCIAISGGVIGYIFGYRHGSKDIDRIYKDVYNIKEF*
Ga0129348_132802813300010296Freshwater To Marine Saline GradientISLCIAISGGVIGYIFGYRHGSGDMDRTYKDVYDIKEY*
Ga0129352_1055955743300012528AqueousKWITEHNMETILISLCIAISGGVIGYIFGYRHGSGDMDRTYKDVYDIKEY*
Ga0129327_10003797143300013010Freshwater To Marine Saline GradientMETILISLCIAVSGGVIGYIFGYRHGSSDMDRNYKDVYNIREV*
Ga0181391_102811123300017713SeawaterMETILISLCIAICGGTIGFIFGYRSGSSDMDRNYREAYNIKEV
Ga0181401_101025633300017727SeawaterMETILISLCIAICGGTIGFIFGYRSGSSDMDRNYKEAYNIKEV
Ga0181399_104638813300017742SeawaterMETILISLCIAICGGTIGFIFGYRSGSSDMDRNYREAYNIKDY
Ga0181399_105838243300017742SeawaterMETILISLCIAICGGTIGFIFGYRSGSSDMDRNYREAYNIK
Ga0181392_103640713300017749SeawaterMETILISLCIAICGGTIGFIFGYRSGSSDMDRNYREAYNIKDH
Ga0187219_103738543300017751SeawaterMETILISLCIAICGGIIGYIFGYRHGSGDMDRTYKDVYNITEN
Ga0181400_109461313300017752SeawaterEPRMETILISLCIAICGGTIGFIFGYRSGSSDMDRNYKEAYNIKEV
Ga0181407_106657513300017753SeawaterILISLCIAICGGLIGFIFGYRSGSSDMDRNYREAYNIKDH
Ga0187217_102611373300017770SeawaterMETILISLCIAICGGLIGFIFGYRSGSSDMDRNYREA
Ga0187217_105035413300017770SeawaterRYDMETILISLCIAICGGLIGFIFGYRSGSSDMDRNYREA
Ga0181380_103472713300017782SeawaterMETILISLCIAICGGLIGFIFGYRSGSSDMDRNYRAAYNIKDH
Ga0181424_1017629323300017786SeawaterMEPRMETILISLCIAICGGTIGFIFGYRSGSSDMDRNYKEAYNIKEV
Ga0181607_10001290303300017950Salt MarshMEVIMISLCIAICGVIIGYIVGYNHGGKDMDRAYKDAYNIKDYR
Ga0206125_1010724553300020165SeawaterMETILIALCIAISGGVIGYIFGYRHGSGDMDRTYKDVYNIKEF
Ga0206125_1012887613300020165SeawaterMEVIMISLCIAICGVIIGYIVGYNHGSKDMDRAYKDAY
Ga0206125_1012950133300020165SeawaterMENILIALCIAVSGGVIGYIFGYRHGSSDMDRNYKDVYNIREV
Ga0206128_100629263300020166SeawaterMEVIMISLCIAICGVIIGYIVGYNHGSKDMDRAYKDAYNIKDYR
Ga0206128_100810913300020166SeawaterMELNMENILIALCIAVSGGVIGYIFGYRHGSSDMDRNYKDVYNIREV
Ga0206128_129322813300020166SeawaterMETILISLCIAVSGGVIGYIFGYRHGSSDMDRNYKDVYNIREV
Ga0206124_1012039633300020175SeawaterMEPNMETILIALCIAISGGVIGYIFGYRHGSGDMDRTYKDVYNIKEF
Ga0206129_1007479853300020182SeawaterMEPNMENILIALCIAISGGVIGYIFGYRHGSSDMDRNYKEAYNIKET
Ga0206129_1021079843300020182SeawaterMETILISLCIAVCGGVIGYIFGYRHGSSDMDRNYKEAYNIREV
Ga0206131_1015806123300020185SeawaterMETILISLCIAISGGVIGYIFGYRHGSGDIDRIYKDVYNIKET
Ga0206130_1036433533300020187SeawaterMETILISLCIAVSGGVIGYIFGYRHGSSDMDRNYKD
Ga0211576_1017053423300020438MarineMETILISLCIAICGGLIGFIFGYRSGSSDMDRNYREAYNIKDH
Ga0206677_1005679813300021085SeawaterMETILISLCIAVCGGVIGYIFGYRHGSSDMDRNYKEAYNI
Ga0213867_101059973300021335SeawaterMETILISLCIAISGGVIGYIFGYRHGSGDMDRTYKDVYNIKEY
Ga0206123_1004042183300021365SeawaterMELNMENILIALCIAVSGGVIGYIFGYRHGSSDMD
Ga0206123_1035276033300021365SeawaterMELNMENILIALCIAVSGGVIGYIFGYRHGSSDMDRNYKDVYNIQEV
Ga0213863_1003967573300021371SeawaterMETILISLCIAISGGVIGYIFGYRHGSGDMDRTYKDVYDIKEY
Ga0222717_1056298913300021957Estuarine WaterMEIILTSLCIAISGGIIGWIVGYNQGSKDIDTIYKDVYDIKEI
Ga0196895_101208043300022067AqueousMETILISLCIAISGGVIGYIFGYRHGSGDIDRIYKDVYDIKET
(restricted) Ga0233432_10001971333300023109SeawaterMETILISLCIAICGGLIGFIFGYRTGSSDMDRNYREAYNIKDH
(restricted) Ga0233432_1008204523300023109SeawaterMETILISLCIAISGGVIGYIFGYRHGSGDVDRIYKDVYNIGDH
Ga0228685_107580233300023701SeawaterMETILISLCIAICGGLIGFIFGYRSGSSDMDRNYREAYNI
Ga0244775_1004284453300024346EstuarineMETILISLCIAICGGVIGYIFGYRHGSGDVDRIYKDVYDIKEV
Ga0244775_1077681543300024346EstuarineMFETISISLCIAISGGVIGYIFGYRHGSGDIDRAYKDIYNIKDHS
Ga0208667_105129323300025070MarineMETILISLCIAISGGVIGYIFGYRHGSGDMDRTYKDVYDIKQY
Ga0208792_100379893300025085MarineMETILISLCIAVCGGLIGFIFGYRSGSSDMDRNYREAYNIKDH
Ga0208434_103976433300025098MarineMETILISLCIAISGGVIGYIFGYRHGSSDMDRTYKDVYDIKQY
Ga0209557_1002396103300025483MarineMETILIALCIAICGGLIGYLFGYRTGSNDIEQVYKDVYDIKDY
Ga0209557_1002402253300025483MarineMETILISLCIAICGGMIGFILGYRSGSGDMDRTYKDVYNITEN
Ga0208903_102817583300025502Saline LakeMEIILTSVCIAICGAVIGWIVGYNQGSKDIEKIYKDVYHIKGY
Ga0208660_1003790103300025570AqueousMETILIALCIAICGGVIGYIFGYRSGSSDIEQVYKDVYEHCIKDY
Ga0209716_103146973300025626Pelagic MarineMETILISLCIAICGGTIGFIFGYRTGSSDMDRNYKEAYNIKDY
Ga0209194_105479133300025632Pelagic MarineMENILIALCIAISGGVIGYIFGYRHGSGDMDRTYKDVYNIKEY
Ga0208643_107827943300025645AqueousMEIILTSLCIAISGGIIGWIVGYNQGSKDIDTIYKDVYDIKEV
Ga0209771_105969053300025701MarineLCIAICGGVIGYIFGYRHGSGDVDRIYKDVYDIKEV
Ga0209602_113529053300025704Pelagic MarineMETILISLCIAISGGVIGYIFGYRHGSGDMDRNYREAYNIKDH
Ga0209137_105774873300025767MarineETILISLCIAVCGGVIGYIFGYRHGSSDMDRNYKEAYNIREV
Ga0209600_108484143300025821Pelagic MarineMMEHNMETILISLCIAISGGVIGYIFGYRHGSGDIDRIYKDVYNIKET
Ga0209308_1006482853300025869Pelagic MarineKWMMEPNMENILIALCIAISGGVIGYIFGYRHGSSDMDRNYKEAYNIKET
Ga0209666_130445833300025870MarineMEPNMETILISLCIAICGGIIGFIFGYRSGSSDMDRNYKEAYNIKDY
Ga0209631_1019016023300025890Pelagic MarineMKHLKWMMEPNMENILIALCIAISGGVIGYIFGYRHGSSDMDRNYKEAYNIKET
Ga0209631_1044492633300025890Pelagic MarineMETILISLCIAISGGVIGYIFGYRHGSNDMDRNYKEAYNIKEF
Ga0247569_109843913300026421SeawaterMETILISLCIAICGGLIGFIFGYRSGSSDMDRNYR
Ga0209712_1015479123300027849MarineMEIILTSLCIAISGAIIGWIVGYNQGSKDIGNIYKDVYDIKELGWTSL


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