Metagenome Family F102959

Overview

Basic Information

• Family ID: F102959
• Family Type: Metagenome
• Number of Sequences: 101
• Average Sequence Length: 48 residues
• Representative Sequence: MKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEARKLAGAT
• Number of Associated Samples: 72
• Number of Associated Scaffolds: 101

Quality Assessment

• Transcriptomic Evidence: No
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 67.33 %
• % of genes near scaffold ends (potentially truncated): 49.50 %
• % of genes from short scaffolds (< 2000 bps): 94.06 %
• Associated GOLD sequencing projects: 65
• AlphaFold2 3D model prediction: No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (67.327 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (49.505 % of family members)
• Environment Ontology (ENVO): Unclassified (67.327 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline) (68.317 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 81.25%
  β-sheet: 0.00%
  Coil/Unstructured: 18.75%

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF01068	DNA_ligase_A_M	5.94
PF00072	Response_reg	4.95
PF01152	Bac_globin	1.98
PF13414	TPR_11	0.99
PF13088	BNR_2	0.99

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	5.94
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	5.94
COG2346	Truncated hemoglobin YjbI	Inorganic ion transport and metabolism [P]	1.98

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	69.31 %
Unclassified	root	N/A	30.69 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	69.31 %
Unclassified	root	N/A	30.69 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	67.33 %
Unclassified	root	N/A	30.69 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	1.98 %

Level 4

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	58.42 %
Unclassified	root	N/A	30.69 %
TACK group	clade	All Organisms → cellular organisms → Archaea → TACK group	1.98 %

Level 5

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	52.48 %
Unclassified	root	N/A	30.69 %
Crenarchaeota	phylum	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota	1.98 %

Level 6

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	50.50 %
Unclassified	root	N/A	30.69 %
unclassified Thermoproteota	no rank	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → unclassified Thermoproteota	1.98 %
Acidobacteria bacterium 13_2_20CM_57_7	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_2_20CM_57_7	1.98 %

Level 7

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	50.50 %
Unclassified	root	N/A	30.69 %
Crenarchaeota archaeon 13_1_20CM_2_51_8	species	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → unclassified Thermoproteota → Crenarchaeota archaeon 13_1_20CM_2_51_8	1.98 %
Acidobacteria bacterium 13_2_20CM_57_7	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_2_20CM_57_7	1.98 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300002561|JGI25384J37096_10043417	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1731
3300002908|JGI25382J43887_10034076	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2757
3300005166|Ga0066674_10104241	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → unclassified Thermoproteota → Crenarchaeota archaeon 13_1_20CM_2_51_8	1318
3300005167|Ga0066672_10632074	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	692
3300005171|Ga0066677_10032336	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2515
3300005172|Ga0066683_10192076	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → unclassified Thermoproteota → Crenarchaeota archaeon 13_1_20CM_2_51_8	1260
3300005172|Ga0066683_10355084	Not Available	909
3300005172|Ga0066683_10557340	Not Available	698
3300005172|Ga0066683_10826784	Not Available	536
3300005174|Ga0066680_10157926	All Organisms → cellular organisms → Bacteria	1421
3300005177|Ga0066690_10518362	Not Available	801
3300005179|Ga0066684_10478197	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	837
3300005181|Ga0066678_10872091	All Organisms → cellular organisms → Bacteria → Acidobacteria	590
3300005187|Ga0066675_10900367	Not Available	668
3300005435|Ga0070714_101703280	Not Available	616
3300005446|Ga0066686_10547088	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	786
3300005447|Ga0066689_10417537	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	839
3300005447|Ga0066689_10572491	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	713
3300005447|Ga0066689_10765192	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	601
3300005450|Ga0066682_10061403	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2301
3300005450|Ga0066682_10835600	Not Available	553
3300005454|Ga0066687_10657988	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	623
3300005467|Ga0070706_100705692	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	935
3300005468|Ga0070707_100485685	Not Available	1197
3300005468|Ga0070707_100800136	All Organisms → cellular organisms → Bacteria	906
3300005536|Ga0070697_100467122	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1100
3300005552|Ga0066701_10561716	All Organisms → cellular organisms → Bacteria	699
3300005552|Ga0066701_10950186	Not Available	509
3300005554|Ga0066661_10719276	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	585
3300005554|Ga0066661_10947401	Not Available	503
3300005556|Ga0066707_10200524	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1287
3300005557|Ga0066704_10395228	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	919
3300005560|Ga0066670_10854039	Not Available	553
3300005561|Ga0066699_10899904	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	617
3300005568|Ga0066703_10329996	Not Available	919
3300005568|Ga0066703_10859463	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_2_20CM_57_7	518
3300005586|Ga0066691_10432657	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	784
3300006032|Ga0066696_10638404	Not Available	688
3300006034|Ga0066656_11029687	Not Available	528
3300006046|Ga0066652_100568572	Not Available	1064
3300006794|Ga0066658_10216462	Not Available	1018
3300006796|Ga0066665_10313151	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1266
3300006796|Ga0066665_11116113	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	601
3300006796|Ga0066665_11192570	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_2_20CM_57_7	581
3300006796|Ga0066665_11450403	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	533
3300006854|Ga0075425_101325924	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	816
3300007258|Ga0099793_10153065	All Organisms → cellular organisms → Bacteria → Acidobacteria	1093
3300009012|Ga0066710_101316955	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1120
3300009012|Ga0066710_102109891	Not Available	828
3300009012|Ga0066710_102592555	Not Available	729
3300009012|Ga0066710_103828624	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	564
3300009088|Ga0099830_11323770	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	599
3300009090|Ga0099827_10221192	Not Available	1582
3300009090|Ga0099827_10646627	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	913
3300009137|Ga0066709_101539048	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	957
3300010303|Ga0134082_10370977	Not Available	609
3300010337|Ga0134062_10245166	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	832
3300012096|Ga0137389_10200585	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1661
3300012096|Ga0137389_10301973	All Organisms → cellular organisms → Bacteria	1355
3300012096|Ga0137389_10331228	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1293
3300012189|Ga0137388_11375688	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	645
3300012200|Ga0137382_10997498	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	601
3300012201|Ga0137365_10291958	All Organisms → cellular organisms → Bacteria	1209
3300012207|Ga0137381_10217429	Not Available	1657
3300012208|Ga0137376_10694195	Not Available	878
3300012211|Ga0137377_10717593	Not Available	934
3300012349|Ga0137387_10092018	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2101
3300012350|Ga0137372_10281413	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1296
3300012350|Ga0137372_10320864	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1194
3300012357|Ga0137384_11585717	All Organisms → cellular organisms → Bacteria	504
3300012359|Ga0137385_10582346	Not Available	942
3300012361|Ga0137360_10813983	All Organisms → cellular organisms → Bacteria → Acidobacteria	804
3300014154|Ga0134075_10480754	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	555
3300017654|Ga0134069_1260507	Not Available	605
3300017659|Ga0134083_10177351	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	872
3300018433|Ga0066667_10398114	Not Available	1112
3300018433|Ga0066667_10943223	Not Available	743
3300018433|Ga0066667_11835004	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	550
3300018468|Ga0066662_10406652	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1199
3300018468|Ga0066662_11346707	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	735
3300025922|Ga0207646_10151425	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2092
3300025922|Ga0207646_10431576	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1189
3300025922|Ga0207646_10572925	All Organisms → cellular organisms → Bacteria	1014
3300026298|Ga0209236_1060048	All Organisms → cellular organisms → Bacteria → Acidobacteria	1850
3300026308|Ga0209265_1026719	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1788
3300026322|Ga0209687_1203784	Not Available	611
3300026322|Ga0209687_1275462	Not Available	527
3300026326|Ga0209801_1255546	All Organisms → cellular organisms → Bacteria → Acidobacteria	658
3300026330|Ga0209473_1104149	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1184
3300026330|Ga0209473_1164472	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	885
3300026331|Ga0209267_1069560	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1541
3300026343|Ga0209159_1085865	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1404
3300026532|Ga0209160_1096161	All Organisms → cellular organisms → Bacteria	1513
3300026536|Ga0209058_1183130	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	910
3300026538|Ga0209056_10137877	All Organisms → cellular organisms → Bacteria → Acidobacteria	1899
3300026538|Ga0209056_10517159	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	618
3300026552|Ga0209577_10383864	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1019
3300027882|Ga0209590_10044991	All Organisms → cellular organisms → Bacteria	2427
3300031720|Ga0307469_12440474	Not Available	511
3300032205|Ga0307472_100149650	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1703
3300032205|Ga0307472_101208216	Not Available	722

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.01%
Host-Associated	Host-Associated	0.99%

Class

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	99.01%
Plants	Host-Associated → Plants	0.99%

Category

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	99.01%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.99%

Type

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	90.10%
Loam	Environmental → Terrestrial → Soil → Loam	8.91%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.99%

Subtype

Habitat	Taxonomy	Distribution
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	62.38%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	24.75%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.92%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.97%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.99%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.99%

Habitat

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	49.50%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	19.80%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	12.87%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.93%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	4.95%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.97%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.99%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.99%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.99%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300002561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm	Environmental
3300002908	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental
3300010303	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015	Environmental
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental
3300014154	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015	Environmental
3300017654	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_2_24_1 metaG	Environmental
3300017659	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaG	Environmental
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental
3300026298	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)	Environmental
3300026308	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103 (SPAdes)	Environmental
3300026322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136 (SPAdes)	Environmental
3300026326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 (SPAdes)	Environmental
3300026330	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133 (SPAdes)	Environmental
3300026331	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137 (SPAdes)	Environmental
3300026343	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144 (SPAdes)	Environmental
3300026532	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153 (SPAdes)	Environmental
3300026536	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147 (SPAdes)	Environmental
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25384J37096_100434171	3300002561	Grasslands Soil	MKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEADQEEARKLAGAI*
JGI25382J43887_100340763	3300002908	Grasslands Soil	LRSKELELSQVEIEVQSLRIVAELLGEEADQEEADQEEARKLAGAI*
Ga0066674_101042411	3300005166	Soil	MKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEARKLAGAT*
Ga0066672_106320742	3300005167	Soil	MKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEARKLAVRYQD*
Ga0066677_100323363	3300005171	Soil	MKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEARKLAGR*
Ga0066683_101920761	3300005172	Soil	MIPRNLFPGEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEARKLAGAT*
Ga0066683_103550841	3300005172	Soil	KEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEDRKLAGAT*
Ga0066683_105573401	3300005172	Soil	DHRMKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEARKLAGAT*
Ga0066683_108267841	3300005172	Soil	MKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEE
Ga0066680_101579261	3300005174	Soil	MKEIDQVLRSKELELSQVEIEVQSLLIVAELLGEEADQEEARKLAGAT*
Ga0066690_105183621	3300005177	Soil	VLRSKELELSQVEIEVQSLRIVAELLGEEADQEEARKLAGR*
Ga0066684_104781972	3300005179	Soil	MKEIDQVLRSKELELSQVEIEVQSLRIVAGLLGEEADQEEARKLAVHTKLKILTTLT*
Ga0066678_108720912	3300005181	Soil	MKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEADQEEAR
Ga0066675_109003672	3300005187	Soil	LKEIDQVLCSKELELSQVEVEVQSLRIVAELLGEEADQEEARKLAGAT*
Ga0070714_1017032802	3300005435	Agricultural Soil	MKEIYQVLRSKELELSQVEIEVQSLRIVAELLGEESDQEEARKLAVRYQ
Ga0066686_105470881	3300005446	Soil	MKEIDQVLRSKESELSQVEIEVQSLRIVAELLGEEADQEEARKLAGAT*DSRPLRLRTF
Ga0066689_104175371	3300005447	Soil	LKEIDQVLHSKELELSQVEIEVQSLRIVAELLSEEADQEEARKLAGAT*
Ga0066689_105724912	3300005447	Soil	MKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEARKLAVRTN*
Ga0066689_107651922	3300005447	Soil	MKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEARKLAVRYQ
Ga0066682_100614031	3300005450	Soil	MKEIDQVLRSKESELSQVEIEVQSLRIVAELLGEEADQEEARKLAGAT*
Ga0066682_108356002	3300005450	Soil	HRMKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEADQEEARKLAGAI*
Ga0066687_106579882	3300005454	Soil	MKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEADQEE
Ga0070706_1007056921	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEARKLAVRTKLKI*
Ga0070707_1004856851	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	LKELDQVLRSKELELSQVEIEVQSLRIVAELLGEEADREEARKLADAFFFRNQH*
Ga0070707_1008001363	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	LRSKELELSQVEIEVQSLRIVAELLGEEPDREEADPEEARSRP*
Ga0070697_1004671222	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEARKLAVRYQN*
Ga0066701_105617161	3300005552	Soil	ISWDHRMKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEARKLAVRTN*
Ga0066701_109501861	3300005552	Soil	SKELELSQVEIEVQSLRIVSELLGEEADQEEARKPGAFDD*
Ga0066661_107192761	3300005554	Soil	DHRMKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEARKLAVRYQD*
Ga0066661_109474011	3300005554	Soil	LKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEADQEEAR
Ga0066707_102005241	3300005556	Soil	LKEIDQVLRSKELELSQVEIEVQSLRIVADLLGEEADQEEARKLAGAT*
Ga0066704_103952283	3300005557	Soil	QVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEARKPAGAT*
Ga0066670_108540393	3300005560	Soil	KELELSQVEIEVQSLRIVAGLLGEEADQEEARKLAVHTKLKILTTLT*
Ga0066699_108999042	3300005561	Soil	MKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEESDQEEARKLAVRYQD*
Ga0066703_103299962	3300005568	Soil	MKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEARKPAGAT*
Ga0066703_108594631	3300005568	Soil	RSKELELSQVEIEVQSLRIVADLLEEADREEGRKLAGHESTV*
Ga0066691_104326571	3300005586	Soil	WDHRMKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEADQEEARKLAGAI*
Ga0066696_106384042	3300006032	Soil	MKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEDADQEEADQEEARKLAGAI*
Ga0066656_110296871	3300006034	Soil	LKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEAD
Ga0066652_1005685722	3300006046	Soil	LKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEAADQEEADQEEARKLAGAI*
Ga0066658_102164621	3300006794	Soil	QVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEADQEEARKLAGAI*
Ga0066665_103131512	3300006796	Soil	LKEVYQVLSSKEVELSQVEIEVQSLRIVSELLGEEADQEEARKLAGAI*
Ga0066665_111161131	3300006796	Soil	MKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEADQEEARK
Ga0066665_111925701	3300006796	Soil	MKEIDQVLRSKELELSQVEIEVQSLRIVADLLEEADREEGRKLAGHESTV*
Ga0066665_114504032	3300006796	Soil	MKEIDQVLRSKESELSQVEIEVQSLRIVAELLGEEADQE
Ga0075425_1013259242	3300006854	Populus Rhizosphere	LKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEARKLVVRYQN*
Ga0099793_101530652	3300007258	Vadose Zone Soil	MKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEADQEEACKLAGAI*
Ga0066710_1013169552	3300009012	Grasslands Soil	MKEIDQVLRSKELELSQVEIEVQSLRVVAELLGEEADQEEARKLAGAT
Ga0066710_1021098911	3300009012	Grasslands Soil	QVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEARKLAGR
Ga0066710_1025925552	3300009012	Grasslands Soil	MKEIDQVLRSKESELSQVEIEVQSLRIVAELLGEEADQEDRKLAGAT
Ga0066710_1038286241	3300009012	Grasslands Soil	QVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEARKLAGAT
Ga0099830_113237701	3300009088	Vadose Zone Soil	MKEIDQVLRSKELELSQVEIEVQSLRIVAKLLGEEADQEEARKLAGAT*
Ga0099827_102211921	3300009090	Vadose Zone Soil	QVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEARKLAGAT*
Ga0099827_106466272	3300009090	Vadose Zone Soil	LKEIYQVLSSKEVELSQVEIEVQSLRIVSELLGEEADQEEARKLAGAI*
Ga0066709_1015390482	3300009137	Grasslands Soil	LKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEAGKLAGAT*
Ga0134082_103709772	3300010303	Grasslands Soil	ILKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEADQEEARKLAGAI*
Ga0134062_102451662	3300010337	Grasslands Soil	MKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEAD
Ga0137389_102005854	3300012096	Vadose Zone Soil	MKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADQKE
Ga0137389_103019734	3300012096	Vadose Zone Soil	LRSKELELSQVEIEVQSLRIVAELLGEESDQEEARKLAVRYQD*
Ga0137389_103312284	3300012096	Vadose Zone Soil	RSKELELSQVEIEVQSLRIVAELLGEEADQKEARKLAGAT*
Ga0137388_113756882	3300012189	Vadose Zone Soil	WDHRMKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADREEVRKLAGAFDTC*
Ga0137382_109974981	3300012200	Vadose Zone Soil	MKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEAHKLAVRYQD*
Ga0137365_102919581	3300012201	Vadose Zone Soil	MKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEADQ
Ga0137381_102174291	3300012207	Vadose Zone Soil	ISWDHRMKEIDQVLRSKELELSQVEIEVQSLRIVAEMLGEEADQEEARKLALRTN*
Ga0137376_106941951	3300012208	Vadose Zone Soil	MKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEAGKLAGAT*
Ga0137377_107175931	3300012211	Vadose Zone Soil	GDHRMKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEARKLAGAT*
Ga0137387_100920182	3300012349	Vadose Zone Soil	MKEIDQVLRSKELELSLVEIEAQSLRIVAELLEEADREEAKPGAFDACC*
Ga0137372_102814131	3300012350	Vadose Zone Soil	IDQVLRSKELELSQVEIEVQSLLIVAELLGEEADQEEARKLAGAT*
Ga0137372_103208641	3300012350	Vadose Zone Soil	MKEIDQVLRYIDLVRSQVEIELQSWLNVADLLDEEADQEEAR
Ga0137384_115857171	3300012357	Vadose Zone Soil	RMKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEESDQEEARKLAVRYQD*
Ga0137385_105823461	3300012359	Vadose Zone Soil	MKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEA
Ga0137360_108139832	3300012361	Vadose Zone Soil	MKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADQE
Ga0134075_104807542	3300014154	Grasslands Soil	WDHRMKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEARKLAVRYQN*
Ga0134069_12605071	3300017654	Grasslands Soil	LKEIDQVLCSKELELSQVEVEVQSLRIVAELLGEEADQEEARKLAGAT
Ga0134083_101773512	3300017659	Grasslands Soil	MKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEARKLAVLYQN
Ga0066667_103981142	3300018433	Grasslands Soil	MKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEARKLAGAT
Ga0066667_109432232	3300018433	Grasslands Soil	LKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEAGKLAGAT
Ga0066667_118350042	3300018433	Grasslands Soil	MKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEARKLAVRYQD
Ga0066662_104066521	3300018468	Grasslands Soil	MEIDQALRSKELELSQVEIEVQSLRIVAELLGEEADQEEARKLAGAT
Ga0066662_113467072	3300018468	Grasslands Soil	MKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEARKLAVRTN
Ga0207646_101514252	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	LKELDQVLRSKELELSQVEIEVQSLRIVAELLGEEADREEARKLADAFFFRNQH
Ga0207646_104315761	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	APGEIILKEIYQVLRSKELELSQVEVEVQSLRIVAELVGEEADQEEARKLAVRYQD
Ga0207646_105729251	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MKEIYQVLRSKELELSQVEIEVQSLRIVAELLGEEPDREEADPEEARSRP
Ga0209236_10600482	3300026298	Grasslands Soil	MKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEADQEEARKLAGAI
Ga0209265_10267192	3300026308	Soil	MKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEARKLAGR
Ga0209687_12037841	3300026322	Soil	MKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEDADQEEADQEEARKLAGAI
Ga0209687_12754621	3300026322	Soil	LKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEDADQEEARKL
Ga0209801_12555462	3300026326	Soil	MKEIDQVLRSKELELSQVEIEVQSLRIVAELLEEADQEEARKLAGAI
Ga0209473_11041492	3300026330	Soil	MKEIDQVLRSKELELSQVEIEVQSLRIVAGLLGEEADQEEARKLAVHTKLKILTTLT
Ga0209473_11644724	3300026330	Soil	KEIDQVLRSKELELSQVEIEVQSLRIVAELLGEDADQEEARKLAGAI
Ga0209267_10695603	3300026331	Soil	MKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEARKL
Ga0209159_10858652	3300026343	Soil	MKEIDQVLRSKESELSQVEIEVQSLRIVAELLGEEADQEEARKLAGAT
Ga0209160_10961611	3300026532	Soil	LRSKELELSQVEIEVQSLRIVAELLGEEADQEEARKPAGAT
Ga0209058_11831301	3300026536	Soil	LKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEADQEEARKLAGAT
Ga0209056_101378771	3300026538	Soil	MKEIDQVLRSKELELSQVEIEVQSLRIVADLLEEADREEGRKLAGHESTV
Ga0209056_105171591	3300026538	Soil	LKEVYQVLSSKEVELSQVEIEVQSLRIVSELLGEEADQEEARKLAGAI
Ga0209577_103838641	3300026552	Soil	MKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEESDQEE
Ga0209590_100449912	3300027882	Vadose Zone Soil	MKEIDQVLRSKELELSQVEIEVQSLRIVAELLGEESDQEEARKLAVRYQD
Ga0307469_124404741	3300031720	Hardwood Forest Soil	MKEIYQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEARKLAVRYQD
Ga0307472_1001496505	3300032205	Hardwood Forest Soil	MKEIHQVLRSKELELSQVEIEVQSLRIVAELLGEEADQEEARKLAVRYQN
Ga0307472_1012082161	3300032205	Hardwood Forest Soil	RSKELELSQVEIEVQSLRIVAELLGEEADQEEADREEARSRP