Metagenome Family F102891

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F102891
Family Type	Metagenome
Number of Sequences	101
Average Sequence Length	71 residues
Representative Sequence	MKPGDPLLRSRPPRVCKVCGSPDKGDFNAPDDTWKTVVPIEYQNKVVCVECFGKFACEKQVELFRVHRIL
Number of Associated Samples	90
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	86.14 %
% of genes near scaffold ends (potentially truncated)	26.73 %
% of genes from short scaffolds (< 2000 bps)	76.24 %
Associated GOLD sequencing projects	83
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (100.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (29.703 % of family members)
Environment Ontology (ENVO)	Unclassified (28.713 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (53.465 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 28.57% β-sheet: 8.57% Coil/Unstructured: 62.86%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF03476	MOSC_N	14.85
PF00795	CN_hydrolase	8.91
PF00582	Usp	3.96
PF04023	FeoA	2.97
PF07883	Cupin_2	2.97
PF13365	Trypsin_2	2.97
PF00903	Glyoxalase	1.98
PF01694	Rhomboid	1.98
PF05494	MlaC	0.99
PF13442	Cytochrome_CBB3	0.99
PF12974	Phosphonate-bd	0.99
PF08241	Methyltransf_11	0.99
PF12681	Glyoxalase_2	0.99
PF07719	TPR_2	0.99
PF00691	OmpA	0.99
PF13751	DDE_Tnp_1_6	0.99
PF02800	Gp_dh_C	0.99
PF07478	Dala_Dala_lig_C	0.99
PF00528	BPD_transp_1	0.99
PF02566	OsmC	0.99
PF02655	ATP-grasp_3	0.99
PF01738	DLH	0.99
PF06480	FtsH_ext	0.99
PF00583	Acetyltransf_1	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG3217	N-hydroxylaminopurine reductase subunit YcbX, contains MOSC domain	Defense mechanisms [V]	14.85
COG1918	Fe2+ transport protein FeoA	Inorganic ion transport and metabolism [P]	2.97
COG0705	Membrane-associated serine protease, rhomboid family	Posttranslational modification, protein turnover, chaperones [O]	1.98
COG0057	Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase	Carbohydrate transport and metabolism [G]	0.99
COG0465	ATP-dependent Zn proteases	Posttranslational modification, protein turnover, chaperones [O]	0.99
COG1764	Organic hydroperoxide reductase OsmC/OhrA	Defense mechanisms [V]	0.99
COG1765	Uncharacterized OsmC-related protein	General function prediction only [R]	0.99
COG2854	Periplasmic subunit MlaC of the ABC-type intermembrane phospholipid transporter Mla	Cell wall/membrane/envelope biogenesis [M]	0.99

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	64.36 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	9.90 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.98 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	64.36 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	6.93 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1.98 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.98 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	64.36 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	6.93 %
Thermoflexia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermoflexia	1.98 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.98 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	64.36 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	3.96 %
Thermoflexales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermoflexia → Thermoflexales	1.98 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.98 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	64.36 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	3.96 %
Thermoflexaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermoflexia → Thermoflexales → Thermoflexaceae	1.98 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.98 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	64.36 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	3.96 %
Thermoflexus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermoflexia → Thermoflexales → Thermoflexaceae → Thermoflexus	1.98 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.98 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	64.36 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	3.96 %
Thermoflexus hugenholtzii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermoflexia → Thermoflexales → Thermoflexaceae → Thermoflexus → Thermoflexus hugenholtzii	1.98 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.98 %
Unclassified	root	N/A	0.00 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2070309009\|GPKNP_GG3DY5402FZ0K6	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	538	Open in IMG/M
2170459002\|FZY7DQ102GJ4IZ	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	552	Open in IMG/M
2228664022\|INPgaii200_c1019065	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermoflexia → Thermoflexales → Thermoflexaceae → Thermoflexus → Thermoflexus hugenholtzii	5895	Open in IMG/M
3300000033\|ICChiseqgaiiDRAFT_c0296557	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	597	Open in IMG/M
3300000955\|JGI1027J12803_100308024	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	552	Open in IMG/M
3300000955\|JGI1027J12803_101026953	All Organisms → cellular organisms → Bacteria	995	Open in IMG/M
3300000956\|JGI10216J12902_105888081	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	929	Open in IMG/M
3300002899\|JGIcombinedJ43975_10083025	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	571	Open in IMG/M
3300003911\|JGI25405J52794_10002070	All Organisms → cellular organisms → Bacteria	3409	Open in IMG/M
3300004281\|Ga0066397_10120468	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	571	Open in IMG/M
3300005167\|Ga0066672_10132611	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1550	Open in IMG/M
3300005171\|Ga0066677_10084349	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1656	Open in IMG/M
3300005174\|Ga0066680_10432180	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	833	Open in IMG/M
3300005174\|Ga0066680_10866951	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	538	Open in IMG/M
3300005178\|Ga0066688_10583520	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	718	Open in IMG/M
3300005180\|Ga0066685_10255820	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1208	Open in IMG/M
3300005186\|Ga0066676_10037794	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2673	Open in IMG/M
3300005332\|Ga0066388_103015094	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	860	Open in IMG/M
3300005332\|Ga0066388_108665444	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	506	Open in IMG/M
3300005447\|Ga0066689_10359731	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	908	Open in IMG/M
3300005447\|Ga0066689_10827600	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	574	Open in IMG/M
3300005450\|Ga0066682_10367300	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	925	Open in IMG/M
3300005536\|Ga0070697_100207632	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1666	Open in IMG/M
3300005536\|Ga0070697_100923834	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	774	Open in IMG/M
3300005546\|Ga0070696_101929956	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	512	Open in IMG/M
3300005554\|Ga0066661_10674987	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	608	Open in IMG/M
3300005558\|Ga0066698_10582690	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	756	Open in IMG/M
3300005559\|Ga0066700_10596875	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	770	Open in IMG/M
3300005559\|Ga0066700_10868967	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	602	Open in IMG/M
3300005587\|Ga0066654_10321142	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	836	Open in IMG/M
3300005937\|Ga0081455_10003191	All Organisms → cellular organisms → Bacteria	19012	Open in IMG/M
3300005981\|Ga0081538_10138498	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1127	Open in IMG/M
3300006034\|Ga0066656_10518585	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	776	Open in IMG/M
3300006797\|Ga0066659_10832044	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	766	Open in IMG/M
3300006797\|Ga0066659_11018514	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	692	Open in IMG/M
3300006852\|Ga0075433_10968133	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	742	Open in IMG/M
3300006854\|Ga0075425_101477292	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	768	Open in IMG/M
3300006854\|Ga0075425_103112463	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	505	Open in IMG/M
3300006904\|Ga0075424_101785904	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	650	Open in IMG/M
3300006914\|Ga0075436_100006783	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermoflexia → Thermoflexales → Thermoflexaceae → Thermoflexus → Thermoflexus hugenholtzii	7835	Open in IMG/M
3300006969\|Ga0075419_10012238	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	5297	Open in IMG/M
3300009012\|Ga0066710_104671550	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	512	Open in IMG/M
3300009089\|Ga0099828_10125856	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2245	Open in IMG/M
3300009156\|Ga0111538_10756356	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1231	Open in IMG/M
3300009168\|Ga0105104_10133298	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1341	Open in IMG/M
3300009817\|Ga0105062_1007676	All Organisms → cellular organisms → Bacteria	1636	Open in IMG/M
3300009836\|Ga0105068_1000086	All Organisms → cellular organisms → Bacteria	9098	Open in IMG/M
3300010043\|Ga0126380_10376319	All Organisms → cellular organisms → Bacteria	1045	Open in IMG/M
3300010046\|Ga0126384_12449381	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	506	Open in IMG/M
3300010047\|Ga0126382_11014141	All Organisms → cellular organisms → Bacteria	728	Open in IMG/M
3300010362\|Ga0126377_13218850	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	528	Open in IMG/M
3300012202\|Ga0137363_10258052	All Organisms → cellular organisms → Bacteria	1418	Open in IMG/M
3300012205\|Ga0137362_10800376	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	808	Open in IMG/M
3300012349\|Ga0137387_10278755	All Organisms → cellular organisms → Bacteria	1207	Open in IMG/M
3300012359\|Ga0137385_11178286	All Organisms → cellular organisms → Bacteria	627	Open in IMG/M
3300012361\|Ga0137360_10002220	All Organisms → cellular organisms → Bacteria	11589	Open in IMG/M
3300012362\|Ga0137361_11248851	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	666	Open in IMG/M
3300012685\|Ga0137397_10143788	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1765	Open in IMG/M
3300012922\|Ga0137394_10020747	All Organisms → cellular organisms → Bacteria	5264	Open in IMG/M
3300012930\|Ga0137407_10207078	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1762	Open in IMG/M
3300012948\|Ga0126375_11181931	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	635	Open in IMG/M
3300014154\|Ga0134075_10389242	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	615	Open in IMG/M
3300016270\|Ga0182036_10296995	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1227	Open in IMG/M
3300016319\|Ga0182033_10177373	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1673	Open in IMG/M
3300016341\|Ga0182035_10712380	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	875	Open in IMG/M
3300016357\|Ga0182032_10089554	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2140	Open in IMG/M
3300016404\|Ga0182037_10766872	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	830	Open in IMG/M
3300018053\|Ga0184626_10001337	All Organisms → cellular organisms → Bacteria	8640	Open in IMG/M
3300018067\|Ga0184611_1296536	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	563	Open in IMG/M
3300018072\|Ga0184635_10038416	All Organisms → cellular organisms → Bacteria	1821	Open in IMG/M
3300018072\|Ga0184635_10068338	All Organisms → cellular organisms → Bacteria	1385	Open in IMG/M
3300018075\|Ga0184632_10007419	All Organisms → cellular organisms → Bacteria	4572	Open in IMG/M
3300018081\|Ga0184625_10013318	All Organisms → cellular organisms → Bacteria → Proteobacteria	3822	Open in IMG/M
3300018084\|Ga0184629_10201363	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1029	Open in IMG/M
3300018084\|Ga0184629_10280100	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	876	Open in IMG/M
3300018431\|Ga0066655_10465757	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	835	Open in IMG/M
3300018468\|Ga0066662_12168114	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	583	Open in IMG/M
3300019886\|Ga0193727_1073325	All Organisms → cellular organisms → Bacteria	1053	Open in IMG/M
3300021081\|Ga0210379_10459700	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	564	Open in IMG/M
3300021479\|Ga0210410_11382466	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	597	Open in IMG/M
3300022756\|Ga0222622_10027587	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2984	Open in IMG/M
3300025922\|Ga0207646_10610086	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	979	Open in IMG/M
3300026317\|Ga0209154_1033296	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2357	Open in IMG/M
3300026324\|Ga0209470_1011432	All Organisms → cellular organisms → Bacteria	5247	Open in IMG/M
3300026331\|Ga0209267_1018510	All Organisms → cellular organisms → Bacteria	3545	Open in IMG/M
3300026331\|Ga0209267_1049135	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1909	Open in IMG/M
3300026334\|Ga0209377_1045193	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2001	Open in IMG/M
3300026524\|Ga0209690_1023350	All Organisms → cellular organisms → Bacteria	3085	Open in IMG/M
3300026538\|Ga0209056_10215812	All Organisms → cellular organisms → Bacteria	1390	Open in IMG/M
3300027056\|Ga0209879_1002625	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2572	Open in IMG/M
3300027277\|Ga0209846_1001392	All Organisms → cellular organisms → Bacteria	4214	Open in IMG/M
3300027909\|Ga0209382_10134345	All Organisms → cellular organisms → Bacteria	2877	Open in IMG/M
3300031740\|Ga0307468_100556472	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	925	Open in IMG/M
3300031820\|Ga0307473_10282114	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1036	Open in IMG/M
3300031847\|Ga0310907_10764344	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	538	Open in IMG/M
3300031908\|Ga0310900_10543467	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	910	Open in IMG/M
3300031910\|Ga0306923_11479278	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	712	Open in IMG/M
3300031912\|Ga0306921_11249024	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	825	Open in IMG/M
3300031962\|Ga0307479_10143597	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2339	Open in IMG/M
3300032076\|Ga0306924_11301568	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	781	Open in IMG/M
3300032205\|Ga0307472_100202998	All Organisms → cellular organisms → Bacteria	1509	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	89.11%
Host-Associated	Host-Associated	10.89%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	78.22%
Aquatic	Environmental → Aquatic	10.89%
Plants	Host-Associated → Plants	10.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	78.22%
Sediment	Environmental → Aquatic → Sediment	8.91%
Rhizosphere	Host-Associated → Plants → Rhizosphere	7.92%
Freshwater	Environmental → Aquatic → Freshwater	1.98%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.98%
Roots	Host-Associated → Plants → Roots	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	66.34%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	8.91%
Loam	Environmental → Terrestrial → Soil → Loam	7.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	7.92%
Sand	Environmental → Terrestrial → Soil → Sand	3.96%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.98%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.98%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.99%

Habitat	Taxonomy	Distribution
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	33.66%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	17.82%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	12.87%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	8.91%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	7.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.96%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	3.96%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.97%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.98%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.98%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.99%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	29.70%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	9.90%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	7.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	7.92%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	7.92%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.95%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.96%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.96%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	3.96%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.97%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.98%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	1.98%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.99%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.99%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.99%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.99%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.99%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere	0.99%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2070309009	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
2170459002	Grass soil microbial communities from Rothamsted Park, UK - March 2009 direct MP BIO 1O1 lysis 0-21 cm	Environmental	Open in IMG/M
2228664022	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002899	Soil microbial communities from Manhattan, Kansas, USA - Combined assembly of Kansas soil 100-500um Nextera (ASSEMBLY_DATE=20140607)	Environmental	Open in IMG/M
3300003911	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300004281	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300005981	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009168	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300009817	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_10_20	Environmental	Open in IMG/M
3300009836	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_10_20	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300014154	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300018053	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1	Environmental	Open in IMG/M
3300018067	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coex	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018075	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018084	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_b1	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300019886	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c2	Environmental	Open in IMG/M
3300021081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_coex redo	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026317	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121 (SPAdes)	Environmental	Open in IMG/M
3300026324	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)	Environmental	Open in IMG/M
3300026331	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137 (SPAdes)	Environmental	Open in IMG/M
3300026334	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141 (SPAdes)	Environmental	Open in IMG/M
3300026524	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150 (SPAdes)	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300027056	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_20_30 (SPAdes)	Environmental	Open in IMG/M
3300027277	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_20_30 (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031847	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPKNP_00361740	2070309009	Soil	KPGDLLLRSRPLRVCKVCGSPDKGDFNGPDETWKTAVPIEYQNKVVCVECFGKFACEKQVELFRVRRLL
E1_05474080	2170459002	Grass Soil	MKLGDSLLTARPRGACKVCGSPDKGDFEIPNDIRKTVIPTEYQNKVVCVECFGKFACEKQVELFRLRRL
INPgaii200_10190651	2228664022	Soil	MKPGDPLLRSRPPRVCKVCGSPDKGDFNATDDTWKTVIPIEYQNKVVCVECFGKFACEKQXELFRVNRLL
ICChiseqgaiiDRAFT_02965572	3300000033	Soil	MKPGDPLLRSRPPRVCKVCGSPDKGDFNATDDTWKTVIPIEYQNKVVCVECFGKFACEKQLELFRVNRLL*
JGI1027J12803_1003080241	3300000955	Soil	MKLGDPLLTLRPPRTCIVCGSPHKGDFKIPNDVWITVIPTEYQNKVVCVECFGTFACEKQIELFRVRRPL*
JGI1027J12803_1010269532	3300000955	Soil	MKLGDSLLTARPRGACKVCGSPDKGDFEIPNDIRKTVIPTEYQNKVVCVECFGKFACEKQVELF
JGI10216J12902_1058880811	3300000956	Soil	MKLGDRLLTVRPPRACKVCGSPDKGDFAIPKDVWKTVVPTEYQNKVVCVECFGKFACEKQVELFRVGLGLLNLKG*
JGIcombinedJ43975_100830251	3300002899	Soil	MKPGDLLLRSRPPRVCKVCGSPDQGDFNAPDDTWKTVVPIKYQNKVVCVKCFGKFACEKQVELFRVRRLL*
JGI25405J52794_100020701	3300003911	Tabebuia Heterophylla Rhizosphere	MKLGEVLLSSRPVRVCKVCGSPDKYDFSAPDETWKTVVPMEYQNAFVCVDCFGQFACEKQIKLFRVHRLL*
Ga0066397_101204681	3300004281	Tropical Forest Soil	MKLGEVLLSSRPVRVCKVCGSPDKCDFSAPDDTWKTVVPMEYQNAFVCVDCFGQFACEKQIRLFQVHRPL*
Ga0066672_101326112	3300005167	Soil	MKLGDPLLTVRPPRACKVCGSPDKGDFEIPKDVWKTVVPTAYQNKVVCVECFGKFACEKQVELFRVGLDLLNLKG*
Ga0066677_100843492	3300005171	Soil	MKLGDPLLTVRPPRACKVCGSPDKGDFEIPKDVWKTVVPTEYQNKVVCVECFGKFACEKQVELFRVGLGLLNLKG*
Ga0066680_104321802	3300005174	Soil	MKLGDPLLTVRPPRACKVCGSPHKGDFEIPKDVWKTVVPTEYQNKVVCVECFGKFACEKQVELFRAGLGLLNLKG*
Ga0066680_108669511	3300005174	Soil	MKLGDPLLTLRPPRTCIVCGSPHKGDFKIPNDVWITVIPTEYQNKVVCVECFGTFACEKQIELFRVHRPL*
Ga0066688_105835201	3300005178	Soil	MKLGDRLLTVRPPRACKVCGSPDKGDFAIPKDVWKTVVPTEYQNKVVCVECFGKF
Ga0066685_102558203	3300005180	Soil	MKLGDPLLTVRPPRACKVCGSPDKGDFEIPKDVWKTVVPTEYQNKVVCVECFGKFACEKQVELFQAGLGLLNLKG*
Ga0066676_100377945	3300005186	Soil	MKLGDRLLTVRPPWACKVCGSPDKGDFEIPKDVWKTVVPTEYQNKVVCVECFGKFVCEKQVELFRVGLGLLNLKG*
Ga0066388_1030150942	3300005332	Tropical Forest Soil	MKVGEVLLNSRPVRVCKVCGSPDKCDFSAPDNTWKTVVPMKYQNAFVCVDCFGQFACEKQIRLFQVHRLP*
Ga0066388_1086654441	3300005332	Tropical Forest Soil	MKLGEVLLSSRPVRVCKVCGSPDKCDFSAPDDTWKTVVPMEYQNAFVCVDCFGQFACEKQIRLFQVHR
Ga0066689_103597312	3300005447	Soil	MKLGDRLLTVRPPRACKVCGSPDKGDFAIPKDVWKTVVPTEYQNKVVCVECFGKFVCEKQVELFRAGLGLLNLKG*
Ga0066689_108276001	3300005447	Soil	MKLGDPLLTVRPPRACKVCGSPDKGDFEIPKDVWKTVVPTEYQNKVVCVECFGEFACEKQVELFRAGLGLLNLKG*
Ga0066682_103673001	3300005450	Soil	GGQMKLGDRLLTVRPPWACKVCGSPDKGDFEIPKDVWKTVVPTEYQNKVVCVECFGKFVCEKQVELFRVGLGLLNLKG*
Ga0070697_1002076321	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MKLGDPLLTSRPPRACKVCGSPDKTDFQIPNDVWKTVVPTEFQNKVVCVECFGKFACEKQVELFRVHKETLGFGVNK*
Ga0070697_1009238342	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MKLGDSPLTARPRGACKVCGSPDKGDFEIPNDIRKTVIPTEYQNKVVCVECFGKFACEKQVELFRLHRLL*
Ga0070696_1019299561	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MKPGDPLLRSRPPRVCKVCGSPDKGDFNATDDTWKTVIPIEYQNKVVCVECFGKFACEKQVELFRVNRLVALRR*
Ga0066661_106749871	3300005554	Soil	MKLGDPLLTVRPPRACKVCGSPDKGDFEIPKDVWKTVVPTAYQNKVVCVECFGKFACEKQ
Ga0066698_105826901	3300005558	Soil	MKLGDPLLTVRPPRACKVCGSPDKGDFEIPKDVWKTVVPTEYQNKVVCVECFGKFACEKQVEL
Ga0066700_105968751	3300005559	Soil	APCTFELLGGQMKLGDSLLTARPRGACKVCSSLDKGDFEIPNNIWKTVIPTEYQNKVVCVECFGKFACEKQVELFRLHRLL*
Ga0066700_108689673	3300005559	Soil	CTFELLGGQMKLGDPLLTLRPPRTCIVCGSPHKGDFKIPNDVWITVIPTEYQNKVVCVECFGTFACEKQIELFRVHRPL*
Ga0066654_103211421	3300005587	Soil	MKLGDRLLTVRPPWACKVCGSPDKGDFEIPKDVWKTVVPTEYQNKVVCVECFGKFACEKQVELFQAGLGLLNLKG*
Ga0081455_100031915	3300005937	Tabebuia Heterophylla Rhizosphere	MKLGEVLLSSRPVRVCKVCGSPDKYDFSAPDETRKTVVPMEYQNAFVCVDCFGQFACEKQIKLFRVHRLL*
Ga0081538_101384981	3300005981	Tabebuia Heterophylla Rhizosphere	MKLGDPLLTARPVRACKVCGSPDKCDFNAPDETWKTVVPVEHQNGFVCVECFGKFACEKQITLFQVYKPLSRISLR*
Ga0066656_105185853	3300006034	Soil	MKLGDRLLTVRPPWACKVCGSPDKGDFEIPKDVWKTVVPTEYQNKVVCVECFGK
Ga0066659_108320441	3300006797	Soil	MKLGDPLLTVRPPRACKVCGSPHKGDFEIPKDVWKTVVPIEYQNKVVCVECFGKFACEKQVELF
Ga0066659_110185141	3300006797	Soil	MKLGDRLLRVRPPRACKVCGSPDKGDFGIPKDVWKTVVPTEYQNKVVCVECFGKFACEKQVELFRAGLGLLNLKG*
Ga0075433_109681332	3300006852	Populus Rhizosphere	MKPGDPLLRSRPPRVCKVCGSPDKGDFNATDDTWKTVIPIEYQNKVVCVECFGKFACEKQVELFRVNRLL*
Ga0075425_1014772921	3300006854	Populus Rhizosphere	MKLGDPLLTSRPPRACKVCGSPDKTDFQIPNDVWKTVVPTEFQNKVVCVECFGKFACEKQVELFRV
Ga0075425_1031124631	3300006854	Populus Rhizosphere	MKPGDFLLRSRPLRVCKVCGSPDKGNFNAPDETWKTVIPSEYQNKVVCVECFGKFACEKQVELFRVRRLL*
Ga0075424_1017859042	3300006904	Populus Rhizosphere	MKPGDLLLRSRPLRVCKVCGSPDKGDFNAPDETWKTAVPIEYQNKVVCVECFGKFACEKQLELFRVRRLL*
Ga0075436_1000067831	3300006914	Populus Rhizosphere	SRPLRVCKVCGSPDKGNFNAPDETWKTVIPSEYQNKVVCVECFGKFACEKQVELLRVRRLL*
Ga0075419_100122383	3300006969	Populus Rhizosphere	MKPGDLLLRSRPLRVCKVCGSPDKGDFNGPDETWKTAVPIEYQNKVVCVECFGKFACEKQVELFRVRRLL*
Ga0066710_1046715501	3300009012	Grasslands Soil	MKLGDPLLTVRPPRACKVCGSPDKGDFEIPKDVWKTVVPTEYQNKVVCVECFGKFACEKQVELFQAGLGLLN
Ga0099828_101258561	3300009089	Vadose Zone Soil	MKLGDPLLTSRPPQACKVCGSPDKTDFQVPNDVWKTVVPTEFQNKVVCVECFGKFACEKQVDLFRVYKETSGFGLNK*
Ga0111538_107563562	3300009156	Populus Rhizosphere	CTFELLGGQMKPGDLLLRSRPLRVCKVCGSPDKGNFNAPDETWKTVIPSEYQNKVVCVECFGKFACEKQVELLRVRRLL*
Ga0105104_101332982	3300009168	Freshwater Sediment	MKLGDPLLTSRPVRACKVCGSPDKCDFNAPDETWKTVVPMKYQNGFVCVECFGKFACETQIKLFQVHKFL*
Ga0105062_10076763	3300009817	Groundwater Sand	LLGGQMKPGDPLLRSRPPRVCKVCGSPDKGDFNAPDDTWKTVVPIEYQNKVVCLECFGKFACEKQIKLFQVHKLL*
Ga0105068_10000869	3300009836	Groundwater Sand	MKPGDPLLRSRPPRVCKVCGSPAKGDFNAPDDTWKTVVPLEYRNKVVCVECFGKFACERQVELFRVHRLL*
Ga0126380_103763191	3300010043	Tropical Forest Soil	MKLGEVLLSSRPVRVCKVCGSPDKCDFSAPDDTCKTVVPMEYQNAFVYVDCFGQFACEKQIRLFQFHRHL*
Ga0126384_124493811	3300010046	Tropical Forest Soil	MAPRTLGLLGGQMKVGEVLLNSRPVRVCKVCGSPDKCDFSAPDDTWKTVVPMKYQNAFVCVDCFGQFACEKQIRLLQVHRLP*
Ga0126382_110141412	3300010047	Tropical Forest Soil	MRLGEVLLNSRPVRVCKVCGSPDKCDFSAPDDTWKTVVPMKYQNAFVCVDCFGQFACEKQIRLFQVHRLP*
Ga0126377_132188501	3300010362	Tropical Forest Soil	MKLGEVLLSSRPVRVCKVCGSPDKCDFSAPDDTWKTVVPMKYQNAFVCVDCFGQFACEKQIRLFQVHRLP*
Ga0137363_102580522	3300012202	Vadose Zone Soil	MKLGDSLLTARPRGACKVCSSLDKGDFEIPNDVWKTVVPTEYQNKVVCVECFGKFACEKQVELFRLHRLL*
Ga0137362_108003762	3300012205	Vadose Zone Soil	MKLGDPLLTARPRGACKVCGSPDKGDFEIPNDIRKTVIPTEYQNKVVCVECFGKFACEKQVELFRLHRLL*
Ga0137387_102787552	3300012349	Vadose Zone Soil	MKLGDRLLTVRPPRACKACGSPDKGDFAIPKDVWKTVVPTAYQNKVVCVECFGKFACEKQVDLFRAGLGLLNLKG*
Ga0137385_111782861	3300012359	Vadose Zone Soil	ELLGGQMKPGDLLLRSRPPRVCKVCGSPDQGDFNAPDDTWKTVVPIKYQNKVVCVKCFGKFACEKQVELFRVRRLL*
Ga0137360_100022207	3300012361	Vadose Zone Soil	MKLGDSLLTARPRGACKVCGSPDKGDFEIPNDIRKTVIPTEYQNKVVCVECFGKFACEKQVELFRLHRLL*
Ga0137361_112488511	3300012362	Vadose Zone Soil	MKLGDPLLTARPRGACKVCGSPDKGDFAIPKDVWKTVVPTEYQNKVVCVECFGKFVCEKQVELFRAGLGLLNLKG*
Ga0137397_101437883	3300012685	Vadose Zone Soil	MKPGDPFLRSRPPRVCKVCGSPDKGDFSAPDDTWKTVVPIKYRNKVVCVECYGKSTCEKQVE
Ga0137394_100207473	3300012922	Vadose Zone Soil	MKPGDPFLRSRPPRVCKVCGSPDKGDFSAPDDTWKTVVPIKYRNKVVCVECFGKFTCEKQVELFRFHRLL*
Ga0137407_102070783	3300012930	Vadose Zone Soil	MKLGDRLLTVRPPRACKVCGSPDKGDFGIPKDVWKTVVPTEYQNKVVCVECFGKFACEKQVELFRAGLGLLNLKG*
Ga0126375_111819311	3300012948	Tropical Forest Soil	MKLGEVLLSSRPVRVCKVCGSPDKCDFTAPDDTWKTVVPMEYQNAFVCVDCFGQFACEKQIRLFQVHRPL*
Ga0134075_103892421	3300014154	Grasslands Soil	MKLGDRLLTVRPPRACKVCGSPDKGDFGIPKDVWKTVVPTEYQNKVVCVECFGKFACEKQVELFRVGLDLLNLKS*
Ga0182036_102969951	3300016270	Soil	MMLGDPPLTLRPLVACNVCGSPDKGDFKIPYDVWKTVIPSEYQNKVVCIECFGKFACEKQVELFRVHRPL
Ga0182033_101773732	3300016319	Soil	MMLGDPLLTLRPVVACNVCGSRDKGEFNIPYDVWKTVIPSEYQNKVVCIECFGKFACEKQVELFRVHRPL
Ga0182035_107123801	3300016341	Soil	MMLGDPLLTLRPLVACNVCGSRDKGDFNIPYDVWKTVIPSEYQNKVVCIECFGKFACEKQVELFRVHRPL
Ga0182032_100895542	3300016357	Soil	MMLGDPLLTLRPLVACNVCGSRDKGDFKIPYDVWKTVIPSEYQNKVVCIECFGKFACEKQVELFRVHRPL
Ga0182037_107668721	3300016404	Soil	PLTLRPLVACNVCGSPDKGDFKIPYDVWKTVIPSEYQNKIVCIECFGKFACEKQVELFRVHRPL
Ga0184626_100013375	3300018053	Groundwater Sediment	MKPGDPFLRSRPPRVCKVCGSPDKGDFSAPDDTWKTVVPIKYRNKVVCVECFGKFTCEKQVELFRVHRLL
Ga0184611_12965361	3300018067	Groundwater Sediment	MKPGDPLLRSRPPRVCKVCGSPDKGDFNAPDDTWKTVIPIEYQNKLVCVECFGKFACEKQVELFRVHRIL
Ga0184635_100384162	3300018072	Groundwater Sediment	MKPGDPLLGSRPARVCKVCGSPDKGDFNAPDDTWKTVIPFEYQNKLVCVECFGKFACEKQVELFRVHRLL
Ga0184635_100683381	3300018072	Groundwater Sediment	MKPGDPLLRSRPPRVCKVCGSPDKGDFNAPDDTWKTVVPIEYQNKVVCVECFGKFACEKQVELFRVHRIL
Ga0184632_100074196	3300018075	Groundwater Sediment	MKPGHPLLGSRPVRVCKVCGSPDKGDFNAPDDTWKTVIPIEYQNKLVCVECFGKFACEKQVELFRVHRIL
Ga0184625_100133188	3300018081	Groundwater Sediment	MKPGHPLLGSRPVRVCKVCGSPDKGDFNAPDDTWKTVIPIEYQNKLVCVECFGKFACEKQVELFRVHRLL
Ga0184629_102013631	3300018084	Groundwater Sediment	MKPGDPLLRSRPPRVCKVCGSPDKGDFNAPDDTWKTVVPIEYQNKVVCVECFGRFACEKQVELFRVHRIL
Ga0184629_102801001	3300018084	Groundwater Sediment	MKPGDPLLGSRPARVCKVCGSPDKGDFNAPDDTWKTVIPIEYQNKLVCVECFGKFACEKQVELFRVHRI
Ga0066655_104657571	3300018431	Grasslands Soil	MKLGDRLLTVRPPWACKVCGSPDKGDFEIPKDVWKTVVPTEYQNKVVCVECFGKFACEKQ
Ga0066662_121681141	3300018468	Grasslands Soil	MKLGDRLLTVRPPRACKVCGSPDKGDFAIPKDVWKTVVPTEYQNKVVCVECFGKFVCEKQVELFRAGLGLLNLKG
Ga0193727_10733252	3300019886	Soil	MKPGDPLLGSRPARVCKVCGSPDKGDFNAPDDTWKTVIPIKYQNKLVCVECFG
Ga0210379_104597002	3300021081	Groundwater Sediment	MKPGDPLLGSRPARVCKVCGSPDKGDFNAPDDTWKTVIPIEYQNKLVCVECFGKFACEKQVELFRVHRIL
Ga0210410_113824662	3300021479	Soil	MKLGDSPLTARPRGACKVCGSPDKGDFEIPNDIRKTVIPTEYQNKVVCVECFGKFACEKQVELFRLHRLL
Ga0222622_100275872	3300022756	Groundwater Sediment	MKPGDPLLGSRPARVCKVCGSPDKGDFNAPDDTWKTVIPIEYQNKLVCVECFGSLLVKSK
Ga0207646_106100862	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MKLGDSLLTARPRGACKVCGSPDKGDFEIPNDIRKTVIPTEYQNKVVCVECFGTFACEKQIELFRVHRPL
Ga0209154_10332962	3300026317	Soil	MKLGDPLLTVRPPRACKVCGSPDKGDFEIPKDVWKTVVPTAYQNKVVCVECFGKFACEKQVELFRVGLDLLNLKG
Ga0209470_10114325	3300026324	Soil	MKLGDRLLTVRPPWACKVCGSPDKGDFEIPKDVWKTVVPTEYQNKVVCVECFGKFVCEKQVELFRVGLGLLNLKG
Ga0209267_10185107	3300026331	Soil	MKLGDRLLTVRPPRACKVCGSPDKGDFAIPKDVWKTVVPTEYQNKVVCVECFGKFACEKQVELFRVGLDLLNLKG
Ga0209267_10491351	3300026331	Soil	MKLGDRLLTVRPPRACKVCGSPDKGDFAIPKDVWKTVVPTEYQNKVVCVECFGKFVCEKQVELFRAGLGL
Ga0209377_10451931	3300026334	Soil	RACKVCGSPDKGDFAIPKDVWKTVVPTEYQNKVVCVECFGKFVCEKQVELFRAGLGLLNLKG
Ga0209690_10233502	3300026524	Soil	MKLGDRLLRVRPPRACKVCGSPDKGDFGIPKDVWKTVVPTEYQNKVVCVECFGKFACEKQVELFRAGLGLLNLKG
Ga0209056_102158122	3300026538	Soil	MKLGDRLLRVRPPRACKVCGSPDKGDFGIPKDVWKTVVPTEYQNKVVCVECFGKFACEKQVDLFRAGLGLLNLKG
Ga0209879_10026255	3300027056	Groundwater Sand	MKPGDPLLRSRPPRVCKVCGSPAKGDFNAPDDTWKTVVPLEYRNKVVCVECFGKFACERQVELFRVHRLL
Ga0209846_10013922	3300027277	Groundwater Sand	MKPGDYLLTSRPPRVCKVCGSPDKGDFNAPDDTWKTVVPLEYRNKVVCVECFGKFACERQVELFRVHRLL
Ga0209382_101343451	3300027909	Populus Rhizosphere	MKPGDFLLRSRPLRVCKVCGSPDKGNFNAPDETWKTVIPSEYQNKVVCVECFGKFACEKQVELLRVRRLL
Ga0307468_1005564722	3300031740	Hardwood Forest Soil	MKPGDPLLRSRPPRVCKVCGSPDKGDFNATDDTWKTVIPIEYQNKVVCVECFGKFACEKQVELFRVNRLL
Ga0307473_102821142	3300031820	Hardwood Forest Soil	MKLGDPLLTLRPPRTCIVCGSPHKGDFKIPNDVWITVIPTEYQNKVVCVECFGTFACEKQIELFRVHRPL
Ga0310907_107643442	3300031847	Soil	MKPGDPLLRSRPPRLCKVCGSPDEGGFNAPDDAWKMVVPMEYQNAFVCVECFGKFACEKQVKLFQVHKLL
Ga0310900_105434673	3300031908	Soil	RRAPSRYWEVKMKPGDPLLRSRPPRLCKVCGSPDEGGFNAPDDAWKMVVPMEYQNAFVCVECFGKFACEKQVKLFQVHKLL
Ga0306923_114792781	3300031910	Soil	MMLGDPLLTLRPLVACNVCSSPDKGDFKIPYDVWKTVIPIEYQNKIVCIECFGKFACEKQVELFRVHRPL
Ga0306921_112490241	3300031912	Soil	MMLGDPPLTLRPLVACNVCGSPDKGDFKIPYDVWKTVIPSEYQNKIVCIECFGKFACEKQVELFRVHRPL
Ga0307479_101435971	3300031962	Hardwood Forest Soil	MKLGDPLLTSRPPRACKVCGSPDKTDFQIPNDVWKTVVPTEFQNKVVCVECFGKFACEKQVELFRVHKETLGFGVNK
Ga0306924_113015681	3300032076	Soil	MMLGDPLLTLRPLVACNVCGSRDKGDFNIPYDVWKTVIPSEYQNKVVCIECFGKLLVKSR
Ga0307472_1002029983	3300032205	Hardwood Forest Soil	MKPGDPLLRSRPPRVCKVCGSPDKGDFNATDDTWKTVIPIEYQNKVVCVECFGKFACEKQVELFRVNRLVALRR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F102891

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences