Metagenome / Metatranscriptome Family F102874

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F102874
Family Type	Metagenome / Metatranscriptome
Number of Sequences	101
Average Sequence Length	53 residues
Representative Sequence	MSDPGHDPVPRRDWKLIVAAVLALALVIGVIAYKYTGDFTGVVKFGTSGQPGRN
Number of Associated Samples	90
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	75.25 %
% of genes near scaffold ends (potentially truncated)	29.70 %
% of genes from short scaffolds (< 2000 bps)	75.25 %
Associated GOLD sequencing projects	85
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (52.475 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (28.713 % of family members)
Environment Ontology (ENVO)	Unclassified (28.713 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (48.515 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 42.59% β-sheet: 0.00% Coil/Unstructured: 57.41%
Feature Viewer

Powered by Feature Viewer

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF03006	HlyIII	10.89
PF00270	DEAD	2.97
PF00534	Glycos_transf_1	1.98
PF13545	HTH_Crp_2	0.99
PF13551	HTH_29	0.99
PF00118	Cpn60_TCP1	0.99
PF00313	CSD	0.99
PF13531	SBP_bac_11	0.99
PF13561	adh_short_C2	0.99
PF06904	Extensin-like_C	0.99
PF13463	HTH_27	0.99
PF04545	Sigma70_r4	0.99
PF00271	Helicase_C	0.99
PF04280	Tim44	0.99
PF13763	DUF4167	0.99
PF00166	Cpn10	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG1272	Predicted membrane channel-forming protein YqfA, hemolysin III family	Intracellular trafficking, secretion, and vesicular transport [U]	10.89
COG0234	Co-chaperonin GroES (HSP10)	Posttranslational modification, protein turnover, chaperones [O]	0.99
COG0459	Chaperonin GroEL (HSP60 family)	Posttranslational modification, protein turnover, chaperones [O]	0.99
COG3921	Uncharacterized conserved protein, contains Extensin-like_C domain	Function unknown [S]	0.99
COG4395	Predicted lipid-binding transport protein, Tim44 family	Lipid transport and metabolism [I]	0.99

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	52.48 %
Unclassified	root	N/A	47.52 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	52.48 %
Unclassified	root	N/A	47.52 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	52.48 %
Unclassified	root	N/A	47.52 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.52 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	39.60 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.52 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	32.67 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.52 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	14.85 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	8.91 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.52 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	14.85 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3.96 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	1.98 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.52 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	14.85 %
unclassified Bradyrhizobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae	2.97 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	1.98 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.99 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.52 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	14.85 %
Bradyrhizobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium	2.97 %
Microvirga arsenatis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga arsenatis	1.98 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.99 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.99 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908045\|KansclcFeb2_ConsensusfromContig826919	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	716	Open in IMG/M
2170459014\|G1P06HT02IGEUJ	Not Available	593	Open in IMG/M
3300000550\|F24TB_10441384	Not Available	1426	Open in IMG/M
3300001867\|JGI12627J18819_10022809	All Organisms → cellular organisms → Bacteria → Proteobacteria	2562	Open in IMG/M
3300002906\|JGI25614J43888_10001221	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	7544	Open in IMG/M
3300002914\|JGI25617J43924_10148578	Not Available	807	Open in IMG/M
3300004114\|Ga0062593_101888893	Not Available	659	Open in IMG/M
3300005148\|Ga0066819_1009610	Not Available	678	Open in IMG/M
3300005166\|Ga0066674_10091339	Not Available	1408	Open in IMG/M
3300005172\|Ga0066683_10294949	Not Available	1008	Open in IMG/M
3300005174\|Ga0066680_10425800	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	841	Open in IMG/M
3300005177\|Ga0066690_10247592	Not Available	1195	Open in IMG/M
3300005332\|Ga0066388_101239337	Not Available	1279	Open in IMG/M
3300005447\|Ga0066689_10741065	Not Available	613	Open in IMG/M
3300005454\|Ga0066687_10740288	Not Available	585	Open in IMG/M
3300005467\|Ga0070706_101878953	Not Available	543	Open in IMG/M
3300005471\|Ga0070698_101614727	Not Available	600	Open in IMG/M
3300005518\|Ga0070699_100007580	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	9438	Open in IMG/M
3300005540\|Ga0066697_10116618	All Organisms → cellular organisms → Bacteria	1564	Open in IMG/M
3300005549\|Ga0070704_101004752	Not Available	755	Open in IMG/M
3300005552\|Ga0066701_10415063	Not Available	834	Open in IMG/M
3300005553\|Ga0066695_10623037	All Organisms → cellular organisms → Bacteria	643	Open in IMG/M
3300005554\|Ga0066661_10434055	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	804	Open in IMG/M
3300005555\|Ga0066692_10352477	Not Available	934	Open in IMG/M
3300005555\|Ga0066692_10686357	Not Available	636	Open in IMG/M
3300005575\|Ga0066702_10150072	Not Available	1379	Open in IMG/M
3300006049\|Ga0075417_10155618	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1066	Open in IMG/M
3300006800\|Ga0066660_10453755	Not Available	1072	Open in IMG/M
3300006844\|Ga0075428_100441790	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1393	Open in IMG/M
3300006844\|Ga0075428_101425342	Not Available	727	Open in IMG/M
3300006845\|Ga0075421_101863912	Not Available	645	Open in IMG/M
3300006854\|Ga0075425_101032381	Not Available	937	Open in IMG/M
3300006871\|Ga0075434_100506033	Not Available	1228	Open in IMG/M
3300006904\|Ga0075424_101191623	Not Available	811	Open in IMG/M
3300006954\|Ga0079219_10894952	Not Available	716	Open in IMG/M
3300007255\|Ga0099791_10032706	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga arsenatis	2289	Open in IMG/M
3300007258\|Ga0099793_10033007	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga arsenatis	2211	Open in IMG/M
3300009090\|Ga0099827_10054259	All Organisms → cellular organisms → Bacteria	3028	Open in IMG/M
3300009147\|Ga0114129_10045974	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	6136	Open in IMG/M
3300009147\|Ga0114129_10209773	All Organisms → cellular organisms → Bacteria → Proteobacteria	2634	Open in IMG/M
3300009840\|Ga0126313_10915860	Not Available	716	Open in IMG/M
3300010041\|Ga0126312_10278572	Not Available	1177	Open in IMG/M
3300010301\|Ga0134070_10176037	Not Available	776	Open in IMG/M
3300012022\|Ga0120191_10000351	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3012	Open in IMG/M
3300012189\|Ga0137388_10949767	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium	794	Open in IMG/M
3300012199\|Ga0137383_10313597	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1148	Open in IMG/M
3300012202\|Ga0137363_10183672	Not Available	1667	Open in IMG/M
3300012204\|Ga0137374_10013102	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	9631	Open in IMG/M
3300012204\|Ga0137374_10276953	All Organisms → cellular organisms → Bacteria	1390	Open in IMG/M
3300012208\|Ga0137376_10063558	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3052	Open in IMG/M
3300012208\|Ga0137376_10753027	All Organisms → cellular organisms → Bacteria	839	Open in IMG/M
3300012208\|Ga0137376_11781199	Not Available	506	Open in IMG/M
3300012209\|Ga0137379_10013602	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	7765	Open in IMG/M
3300012211\|Ga0137377_10323614	Not Available	1477	Open in IMG/M
3300012354\|Ga0137366_10674135	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	738	Open in IMG/M
3300012356\|Ga0137371_10044793	All Organisms → cellular organisms → Bacteria	3418	Open in IMG/M
3300012356\|Ga0137371_10070232	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2712	Open in IMG/M
3300012357\|Ga0137384_10568484	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	927	Open in IMG/M
3300012357\|Ga0137384_11028803	Not Available	662	Open in IMG/M
3300012359\|Ga0137385_10976344	Not Available	699	Open in IMG/M
3300012361\|Ga0137360_10505072	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1029	Open in IMG/M
3300012361\|Ga0137360_10800320	Not Available	811	Open in IMG/M
3300012362\|Ga0137361_11099340	Not Available	716	Open in IMG/M
3300012685\|Ga0137397_10497286	Not Available	908	Open in IMG/M
3300012922\|Ga0137394_10995689	Not Available	697	Open in IMG/M
3300012929\|Ga0137404_10925355	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium	796	Open in IMG/M
3300012929\|Ga0137404_11827039	Not Available	565	Open in IMG/M
3300012976\|Ga0134076_10289685	Not Available	707	Open in IMG/M
3300012986\|Ga0164304_10274263	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1143	Open in IMG/M
3300012987\|Ga0164307_10452787	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	959	Open in IMG/M
3300015264\|Ga0137403_10075286	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3420	Open in IMG/M
3300015371\|Ga0132258_11506407	All Organisms → cellular organisms → Bacteria	1699	Open in IMG/M
3300015371\|Ga0132258_11580993	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1655	Open in IMG/M
3300016422\|Ga0182039_10055443	All Organisms → cellular organisms → Bacteria	2722	Open in IMG/M
3300018061\|Ga0184619_10273210	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	776	Open in IMG/M
3300018072\|Ga0184635_10029908	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2040	Open in IMG/M
3300018081\|Ga0184625_10018684	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3287	Open in IMG/M
3300018433\|Ga0066667_11532286	Not Available	591	Open in IMG/M
3300020581\|Ga0210399_10743585	All Organisms → cellular organisms → Bacteria → Proteobacteria	804	Open in IMG/M
3300025910\|Ga0207684_10025726	All Organisms → cellular organisms → Bacteria	5014	Open in IMG/M
3300025915\|Ga0207693_10071386	All Organisms → cellular organisms → Bacteria → Proteobacteria	2717	Open in IMG/M
3300025939\|Ga0207665_10126612	All Organisms → cellular organisms → Bacteria	1809	Open in IMG/M
3300026298\|Ga0209236_1252848	Not Available	580	Open in IMG/M
3300026300\|Ga0209027_1275764	Not Available	541	Open in IMG/M
3300027050\|Ga0209325_1000548	All Organisms → cellular organisms → Bacteria → Proteobacteria	2685	Open in IMG/M
3300027655\|Ga0209388_1038025	All Organisms → cellular organisms → Bacteria → Proteobacteria	1385	Open in IMG/M
3300027873\|Ga0209814_10103819	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1207	Open in IMG/M
3300027875\|Ga0209283_10908950	Not Available	532	Open in IMG/M
3300027909\|Ga0209382_10054061	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4777	Open in IMG/M
3300029636\|Ga0222749_10103700	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium	1338	Open in IMG/M
3300031681\|Ga0318572_10301636	Not Available	947	Open in IMG/M
3300031719\|Ga0306917_10633993	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	840	Open in IMG/M
3300031744\|Ga0306918_10037613	All Organisms → cellular organisms → Bacteria	3122	Open in IMG/M
3300031820\|Ga0307473_11229624	Not Available	558	Open in IMG/M
3300031833\|Ga0310917_10038403	All Organisms → cellular organisms → Bacteria	2879	Open in IMG/M
3300031879\|Ga0306919_10513899	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	923	Open in IMG/M
3300031880\|Ga0318544_10395354	Not Available	537	Open in IMG/M
3300031890\|Ga0306925_11540334	Not Available	649	Open in IMG/M
3300032001\|Ga0306922_10084878	All Organisms → cellular organisms → Bacteria	3330	Open in IMG/M
3300032054\|Ga0318570_10580994	Not Available	511	Open in IMG/M
3300034354\|Ga0364943_0205432	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	726	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	86.14%
Host-Associated	Host-Associated	12.87%
Engineered	Engineered	0.99%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	83.17%
Plants	Host-Associated → Plants	12.87%
Aquatic	Environmental → Aquatic	2.97%
Solid Waste	Engineered → Solid Waste	0.99%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	82.18%
Rhizosphere	Host-Associated → Plants → Rhizosphere	10.89%
Sediment	Environmental → Aquatic → Sediment	2.97%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.98%
Floodplain	Environmental → Terrestrial → Floodplain	0.99%
Grass	Engineered → Solid Waste → Grass	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	71.29%
Loam	Environmental → Terrestrial → Soil → Loam	10.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	10.89%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.97%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.98%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.99%
Composting	Engineered → Solid Waste → Grass → Composting	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	36.63%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	19.80%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	12.87%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	10.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.93%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.97%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.97%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.98%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.99%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.99%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	28.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	14.85%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	10.89%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.94%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	4.95%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.98%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	1.98%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.98%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.98%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.99%
Terrestrial	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.99%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.99%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.99%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.99%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.99%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	0.99%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908045	Soil microbial communities from Great Prairies - Kansas assembly 1 01_01_2011	Environmental	Open in IMG/M
2170459014	Litter degradation PV2	Engineered	Open in IMG/M
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300002906	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm	Environmental	Open in IMG/M
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300005148	Soil and rhizosphere microbial communities from Laval, Canada - mgLMA	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09082015	Environmental	Open in IMG/M
3300012022	Terrestrial microbial communites from a soil warming plot in Okalahoma, USA - C6	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012976	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026298	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026300	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300027050	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027655	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300034354	Sediment microbial communities from East River floodplain, Colorado, United States - 23_s17	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
KansclcFeb2_15112510	2124908045	Soil	MSDPGHDPVPRRDWKLIVAAVLALALVIGVIAYKYTGDFTGFAKFGTSGQ
2PV_04449280	2170459014	Switchgrass, Maize And Mischanthus Litter	MSDPGHDPVPRRDWKLIVAAVLALALVIGVIAYKYTGDFTGAAKFGTSGQPSRN
F24TB_104413843	3300000550	Soil	VPRRDWKLIVAAVLALALVIGVIAYKYTGDFTGFAKFGTSGQPSRD*
JGI12627J18819_100228092	3300001867	Forest Soil	MSDPRHGPVPRRDWKLIVAAVLALALLIGVIAYKYTGDFTGVVKFGTSGQPGRN*
JGI25614J43888_1000122116	3300002906	Grasslands Soil	MSDPGHDPVPRRDWKLIVAAVLALALLIGVIAYKYTGDFTGVVKFGTSGQPGRN*
JGI25617J43924_101485783	3300002914	Grasslands Soil	HDPVPRRDWKLIVAAVLALALLIGVIAYKYTGDFTGVVKFGTSGQPGRN*
Ga0062593_1018888931	3300004114	Soil	RDWKLIVAAVLALALLIGVIAYKYTGDFTGVVKFGTSGQPGRN*
Ga0066819_10096102	3300005148	Soil	MSDHDPIPRRDWKLIVAAVLALALLIGVIAYKYTGDFTGVVKFGTSGQPGRN*
Ga0066674_100913393	3300005166	Soil	MSDPGHDPVPRRDWKLIVAAALALALVIGVIAYKYTGDFTGVVKFGTSGQPGRN*
Ga0066683_102949492	3300005172	Soil	MSDPRKEFVFRRDWKLLVAAVLALALVIGVIAYKYTGDFTGFARFGTSGQPSRD*
Ga0066680_104258002	3300005174	Soil	MSDPRNGFVPRRDWKLIVAALLALAFVIGVIAYKYTGDFTGFAKFGTSGQPSRN*
Ga0066690_102475922	3300005177	Soil	MSDPGHDPVPRRDWKLIVAAALALALVIGVIAYKYTGDFTGVIKFGTSGQPGRN*
Ga0066388_1012393371	3300005332	Tropical Forest Soil	MSDPGNDLVKLIAAAVLALALVIGVIAYKYTGDFTRVVKFGTSGQPSRN*
Ga0066689_107410651	3300005447	Soil	MSDPEHDPVPRRDWKLIVAAALALALVIGVIAYKYTGDFTGVIRFGTSGQPGRN*
Ga0066687_107402882	3300005454	Soil	MSDPGHDPVPRRDWKLIVAAVLALALVIGVIAYKYTGDFTGVVKFGTSGQPGRN*
Ga0070706_1018789532	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MSDPGPDPVPRRDWKLIVAAALALALLIGVIAYKYTGDFTGVVRFGTSGQPGRN*
Ga0070698_1016147271	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MSDPGHDPVPRRDWKLIVAAALALALLIGVIAYKYTGDFTGVVRFGTSGQPGRN*
Ga0070699_10000758012	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MSDPEHDPVPRRDWKLIVAAVLALALVIGVIAYKYTGDVTGVVKFGTSGQPGRN*
Ga0066697_101166181	3300005540	Soil	YLRRGHYSKQKCKMSDPGHDPVPRRDWKLIVAAALALALVIGVIAYKYTGDFTGVIRFGTSGQPGRN*
Ga0070704_1010047521	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MSDPGHDPVPRRDWKLIVAAVLALALVIGVIAYKYTGDVTGVVKFGTSGQPGRN*
Ga0066701_104150631	3300005552	Soil	KMSDPGHDPVPRRDWKLIVAAALALALVIGVIAYKYTGDFTGVIKFGTSGQPGRN*
Ga0066695_106230372	3300005553	Soil	LLVAAVLALAFVIGVIAYKYTGDFTGFAKFGTSGQPSRN*
Ga0066661_104340553	3300005554	Soil	MSDPRNGLVPRRDWKLIVAALLALAFVIGVIAYKYTGDFTGFAKFGTSGQPSRN*
Ga0066692_103524772	3300005555	Soil	MSDPRKEFVFRRDWKLLVAAVLALALVIGVIAYKYTGDFTGVVKFGTSGQPGRN*
Ga0066692_106863571	3300005555	Soil	MSDPGHDPVPRRDWKLIVAAVLALALVLGVIAYKFTGDFTGVVKFGTS
Ga0066702_101500722	3300005575	Soil	MSDPRKDFLFRRDWKLLLAAVLALALVLAVIAYEYTGDFTGFAKFGTSGQPSRN*
Ga0075417_101556183	3300006049	Populus Rhizosphere	MSDSGNDSRRRDWRVIVVALLAVALVVGGIVYKYTGDFTGFAKFGTSGQPARD*
Ga0066660_104537551	3300006800	Soil	PVPRRDWKLIVAAALALALVIGVIAYKYTGDFTGVIKFGTSGQPGRN*
Ga0075428_1004417904	3300006844	Populus Rhizosphere	MGDSRNDSRRRDWRVIVVALLAVALVLGVIVYKYTGDFTGFAKFGTSGQPGRD*
Ga0075428_1014253422	3300006844	Populus Rhizosphere	MSDPRNDFVFRRDWKLLVAAVLALALVIGVIAYKYTGDFTGFARFGTSGQPSRD*
Ga0075421_1018639123	3300006845	Populus Rhizosphere	MSDSGHDPLPRRDWKLIVAAVLALALVIGVIAYKYTGDFTGVAKFGTSGQPSRN*
Ga0075425_1010323813	3300006854	Populus Rhizosphere	RGHYSKQKCKMSDSGHDPVPRRDWKLIVAAVLALALVIGVIAYKYTGDFTGVVKFGTSGQPGRN*
Ga0075434_1005060332	3300006871	Populus Rhizosphere	MSDSGHDPVPRRDWKLIVAAVLALALVIGVIAYKYTGDFTGVVKFGTSGQPGRN*
Ga0075424_1011916231	3300006904	Populus Rhizosphere	MSDPRDDFVLRRDWKLIVAALLALAFVIGVIAYEYTGDFTGLAKFGTSRQPSRN*
Ga0079219_108949522	3300006954	Agricultural Soil	MSDSGHDPLPRRDWKLIVAAVLALALVIGVIAYKYTGDFTGVVKFGTSGQPGRN*
Ga0099791_100327064	3300007255	Vadose Zone Soil	MSDPGHDPVPRRDWKLIVAAALALALLIGVIAYKYTGDFTGVVKFGTSGQPGRN*
Ga0099793_100330072	3300007258	Vadose Zone Soil	MSDHDPVPRRDWKLIVAAVLALALLIGVIAYKYTGDFTGVVKFGTSGQPGRN*
Ga0099827_100542597	3300009090	Vadose Zone Soil	MSDPGNDPAPRRDWKLIVAALLALALVIGVIAYKYTGDFTGVIKFGTSGQPGRN*
Ga0114129_100459748	3300009147	Populus Rhizosphere	MSDSGNDSRRRDWRVIVVALLAVALVVGGIVYKYTGDFTGFAKFGTGGQPARD*
Ga0114129_102097733	3300009147	Populus Rhizosphere	VFRRDWKLLVAAVLALALVIGVIAYKYTGDFTGFARFGTSGQPSRD*
Ga0126313_109158601	3300009840	Serpentine Soil	MSDPRKEFVFRRDWKLLLAAVLALALVIGVIAYKYTGDFTGFARFGTSGQPSRD*
Ga0126312_102785722	3300010041	Serpentine Soil	MSDPRKEFVFRRDWKMLLAAVLALALVIGVIAYKYTGDFTGFARFGTSGQPSRD*
Ga0134070_101760371	3300010301	Grasslands Soil	PGHDPVPRRDWKLIVAAALALALVIGVIAYKYTGDFTGVIKFGTSGQPGRN*
Ga0120191_100003516	3300012022	Terrestrial	MSDPRKDFVFRRDWKLLVAAVLALALVIGVIAYKYTGDFTGFAKFGTSGQSSRN*
Ga0137388_109497671	3300012189	Vadose Zone Soil	MSDHDPVPRRDWKLLVAAVLALARLIGVIAYKYTGDFTGVVKFGTSGQPGRN*
Ga0137383_103135972	3300012199	Vadose Zone Soil	MSDPRNGFVPRRDWKLIVAALLALAFVTGVIAYKYTGDFTGFAKFGTSGQPSRN*
Ga0137363_101836723	3300012202	Vadose Zone Soil	MSDPGNDPAPRRDWKLIVAALLALALVIGVIAYKYTGDLTGFVKFGTSGQPSRN*
Ga0137374_100131024	3300012204	Vadose Zone Soil	MSDPRNGFVPRRDWKLIVAALLALAFVIAVIAYKYTGDFTGFAKFGTSGQPSRN*
Ga0137374_102769532	3300012204	Vadose Zone Soil	MKKRKPEMVLIVLALLAAFLVIGSITYKYTGDFTGLLKLGTSGQSPRE*
Ga0137376_100635585	3300012208	Vadose Zone Soil	MSDPRNGLVPRRDWNLIVAALLALAFVIGVIAYKYTGDFTGFAKFGTSGQPSRN*
Ga0137376_107530272	3300012208	Vadose Zone Soil	MSDPRKDFLFRRDWKLLLAAVLALALVIAVIAYEYTGDFTGFAKFGTSGQPSRN*
Ga0137376_117811992	3300012208	Vadose Zone Soil	MSDPEHDPVPRRDWKLIVAAALALALVIGVIAYKYTGDFTGVIKFGTSGQPGRN*
Ga0137379_100136022	3300012209	Vadose Zone Soil	MSDPEHDPVPRRDWKLIVAAVLALALVIRVIAYKYTGDVTGVVKFGTSGQPGRN*
Ga0137377_103236142	3300012211	Vadose Zone Soil	MSDPRKEFVFRRDWKLLVAAVLALALVIGVIAYKYTGDFTGFARFG
Ga0137366_106741352	3300012354	Vadose Zone Soil	MSDSGNDSRRRDWRVIVVALLAGALVFGGIVYKYTGDFTGFAKFGTSGQPGRN*
Ga0137371_100447936	3300012356	Vadose Zone Soil	MSDPEHDPVPRRDWKLIVAAVLALALVIGVIAYKYTGGVTGVVKFGTSGQPGRN*
Ga0137371_100702321	3300012356	Vadose Zone Soil	MRDPRNGFVPRRDWKLIVAALLALAFVIGVIAYKYTGDFTGFAKFGTSGQ
Ga0137384_105684841	3300012357	Vadose Zone Soil	MSDPRNGFVPRRDWKLIVAALLALAFVIAVIAYKYTGDFTGFAKFGTTGQPSGN*
Ga0137384_110288031	3300012357	Vadose Zone Soil	HDPVPRRDWKLIVAAALALALVIGVIAYKYTGDFTGVIRFGTSGQPGRN*
Ga0137385_109763441	3300012359	Vadose Zone Soil	LADCKQKGKMSDPRNDFVPRRDWKLIVAPLLALALVIGVISYKYTGDFTGFAKFGTSGQPSRN*
Ga0137360_105050723	3300012361	Vadose Zone Soil	MSDPGHDPVPRRDWKLIVAAALALALVIGVIAYKYTGDFTGVIKFGTSG
Ga0137360_108003201	3300012361	Vadose Zone Soil	KMSDPGHDPVPRRDWKLIVAAVLALALVLGVIAYKFTGDFTGVVKFGTSGQQGRN*
Ga0137361_110993401	3300012362	Vadose Zone Soil	MSDPGHDPVPRRDWKLIVAAVLALALVLGVIAYKFTGDFTGVVKFGTSGQQGRN*
Ga0137397_104972862	3300012685	Vadose Zone Soil	MSDPRNDFVPRRDWKLIVAAVLALAFVIGVIAYKYTGDFTGFAKFGTSGQPSRN*
Ga0137394_109956892	3300012922	Vadose Zone Soil	LIVAALLALAFVIGVIAYKYTGDFTGFAKFGTSGQPSRN*
Ga0137404_109253552	3300012929	Vadose Zone Soil	MSDPGHDPVPRRDWKLIVAAALALALVIGVIAYKYTGDFTGVIRFGTSGQPGRN
Ga0137404_118270391	3300012929	Vadose Zone Soil	MSDPRKDFVFRRDWKLLVAAVLALALVIAVIAYKYTGDFTGFARFGTSGQPSRN*
Ga0134076_102896851	3300012976	Grasslands Soil	MSDPEHDPVPRRDWKLIVAAVLALALVLGVIAYKFTGDFTGVVKFGTSGQQGRN*
Ga0164304_102742631	3300012986	Soil	MSDHDPAPRRDWKLIVAAVLALALLIGVIAYKYTGDFTGVVKFGTSGQPGRN*
Ga0164307_104527872	3300012987	Soil	MSDHDPVPRRDWKLIVAAALALALLIGVIAYKYTGDFTGVVKFGTSGQPGRN*
Ga0137403_100752861	3300015264	Vadose Zone Soil	MSDPRKEFVFRRDWKLLVAAVLALALVIGVIAYKYTGDFTGFARFGTSGQPSRN*
Ga0132258_115064072	3300015371	Arabidopsis Rhizosphere	MTNVLGYCKQKGKMSDPGNDSVHRRDWKLIVAALLVLAVVIGVIAYKYTGDFSGFAKFGTSGQPSRN*
Ga0132258_115809931	3300015371	Arabidopsis Rhizosphere	RRDWKLIVAAVLALALLIGVIAYKYTGDFTGVVRFGTSGQPGRN*
Ga0182039_100554439	3300016422	Soil	VPTPGHYSKQKCKMSDSGHDPAPRRDWKLIVAAVLALALLIGVIAYKYTGDFTGVVKFGTSGQPGRN
Ga0184619_102732102	3300018061	Groundwater Sediment	MSDPRNDFVPRRDWKLIVAALLALAFVIGVIAYKYTGDFTGFAKFGTSGQPSRN
Ga0184635_100299083	3300018072	Groundwater Sediment	MSDSGNDPRRPDWRVIVVALLAAALVFGGIVYKYTGDFTGFAKFGTSGQPSRD
Ga0184625_100186841	3300018081	Groundwater Sediment	RQMSDSGNDPRRPDWRVIVVALLAAALVFGGIVYKYTGDFTGFAKFGTSGQPSRD
Ga0066667_115322861	3300018433	Grasslands Soil	MSDPGHDPVPRRDWKLIVAAVLALALLIGVIAYKYTGDFTGVVKFGTSGHPGRN
Ga0210399_107435851	3300020581	Soil	MSDHDPVPRRDWKLIVAAVLALALLIGVIAYKYTGDFTGVVKFGTSGQPGRN
Ga0207684_100257268	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MSDPGHDPVPRRDWKLIVAAALALALVIGVIAYKYTGDFTGVIKFGTSGQPGRN
Ga0207693_100713866	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MSDPGHDPVPRRDWKLIVAAVLALALLIGVIAYKYTGDFTGVVKFGTSGQPGRN
Ga0207665_101266123	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MSDPGHDPVPRRDWKLIVAAALALALVIGVIAYKYTGDFTGVVKFGTSGQPGRN
Ga0209236_12528481	3300026298	Grasslands Soil	MSDPGHDPVPRRDWKLIVAAVLALALVLGVIAYKFTGDFTGVVKFGTSGQQGRN
Ga0209027_12757641	3300026300	Grasslands Soil	FRRDWKLLLAAVLALALVLAVIAYEYTGDFTGFAKFGTSGQPSRN
Ga0209325_10005484	3300027050	Forest Soil	MSDPGHDPVPRRDWKLIVAAVLALALLIGVIAYKYTGDFTGVVKFGTSGQPPRN
Ga0209388_10380253	3300027655	Vadose Zone Soil	MSDPGHDPVPRRDWKLIVAAALALALLIGVIAYKYTGDFTGVVKFGTSGQPGRN
Ga0209814_101038192	3300027873	Populus Rhizosphere	MSDSGNDSRRRDWRVIVVALLAVALVVGGIVYKYTGDFTGFAKFGTSGQPARD
Ga0209283_109089501	3300027875	Vadose Zone Soil	CKMSDHDPVPRRDWKLIVAAVLALALLIGVIAYKYTGDFTGVIKFGTSGQPGRN
Ga0209382_100540611	3300027909	Populus Rhizosphere	MSDSGNDSRRRDWRVIVVALLAVALVVGGIVYKYTGDFTGFAKFGT
Ga0222749_101037002	3300029636	Soil	MSDPGHDPVPRRDWKLIVAAVLALALLIGVIAYKYTGDFTGVVKFGTSGQPGRD
Ga0318572_103016361	3300031681	Soil	PGHDPAPRRDWKLIVAAVLALALMIGVIAYKYTGDFTGVVKFGTSGQPGRN
Ga0306917_106339931	3300031719	Soil	PAPRRDWKLIVAAVLALALVIGVIAYKYTGDFTGVVKFGTSGQPGRN
Ga0306918_100376131	3300031744	Soil	RDWKLIVAAVLALALVIGVIAYKYTGDFTGVVKFGTSGQPGRN
Ga0307473_112296241	3300031820	Hardwood Forest Soil	AVLALALVIGVIAYKYTGDFTGAVKFGTSGQPGRN
Ga0310917_100384032	3300031833	Soil	MSDSGHDPAPRRDWKLIVAAVLALALVIGVIAYKYTGDFTGVVKFGTSGQPGRN
Ga0306919_105138991	3300031879	Soil	MSDPGHDPAPRRDWKLIVAAVLALALVIGVIAYKYTGDFTGVVKFGT
Ga0318544_103953542	3300031880	Soil	MSDPGHDPAPRRDWKLIVAAVLALALVIGVIAYKYTGDFTGVVKFGTSGQPGRN
Ga0306925_115403342	3300031890	Soil	MSDSGHDPAPRRDWKLIVAAVLALALLIGVIAYKYTGDFTGVVKFGTSGQPGRN
Ga0306922_100848781	3300032001	Soil	TPGHYSKQKCKMSDSGHDPAPRRDWKLIVAAVLALALVIGVIAYKYTGDFTGVVKFGTSGQPGRN
Ga0318570_105809941	3300032054	Soil	MSDPGHDPAPRRDWKLIVAAVLALALVIGVIAYKYTGYFTGVVKFGTSGQPGRN
Ga0364943_0205432_36_197	3300034354	Sediment	MSDSGNDPRRPDWRVIVVALLAVALVLGVIVYKYTGDFTGFAKFGTSGQPGRD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F102874

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences