Basic Information | |
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Family ID | F102831 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 101 |
Average Sequence Length | 51 residues |
Representative Sequence | CDGWWRSPHTIYMAQGQLYDRQLAEHEMLHDLLQRGDHPPVFQACGV |
Number of Associated Samples | 80 |
Number of Associated Scaffolds | 101 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 2.97 % |
% of genes near scaffold ends (potentially truncated) | 91.09 % |
% of genes from short scaffolds (< 2000 bps) | 88.12 % |
Associated GOLD sequencing projects | 72 |
AlphaFold2 3D model prediction | No |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (100.000 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (31.683 % of family members) |
Environment Ontology (ENVO) | Unclassified (46.535 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (56.436 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 51.06% β-sheet: 0.00% Coil/Unstructured: 48.94% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Vadose Zone Soil Grasslands Soil Agricultural Soil Soil Grasslands Soil Hardwood Forest Soil Soil Forest Soil Corn, Switchgrass And Miscanthus Rhizosphere Agricultural Soil Soil Populus Rhizosphere |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
C687J29039_101562132 | 3300002243 | Soil | AWYEVPGSRYACPGYSRGCAGWWRPPHTIYMAQASVKERRPVQHEMLHDLLQRSDHPPVFRTCGV* |
Ga0066677_104338261 | 3300005171 | Soil | CPAYEGRCDGWWQPRHTIYLAHRWRNDRQLVEHEMLHDLLQRGDHPPVFQACGV* |
Ga0066683_106024481 | 3300005172 | Soil | QCDGWWRAPHTIYMAQGRLYDRQVAEHEMLHDLLQRGDHPPVFRACGV* |
Ga0066680_108239601 | 3300005174 | Soil | PGSTYACPAHEGRCDGWWRSPHTIYMAQSRLYDRQLVEHEMLHDLLQRGDHPPVFQTCGV |
Ga0066678_107554561 | 3300005181 | Soil | EGRCDGWWRSPHTIYMAQGLLYNRRLAEHEMLHDLLQRGDHPPVFQACGV* |
Ga0066676_105510281 | 3300005186 | Soil | QCDGWWRSPHTIYMAQGRLYDRRVAEHEMLHDLLQRGDHPPAFQACGV* |
Ga0066676_107157942 | 3300005186 | Soil | EGQCDGWWRSPHTIYMAQGLLYNRRLAEHEMLHDLLQRGDHPPVFQACGV* |
Ga0066675_108143281 | 3300005187 | Soil | DYPCPAYEGRCDGWWQPPHTIYLAYRWRNDRQLVEHEMLHDLLQRGDHPPVFHACGV* |
Ga0070714_1009673181 | 3300005435 | Agricultural Soil | GWWQPPHTIYMAQDQTSNRVLAEHEMLHDLLQRGDHPPVFAACNVSTQREW* |
Ga0070711_1007460112 | 3300005439 | Corn, Switchgrass And Miscanthus Rhizosphere | GSSYSCPAYEGRCDGWWRSPHTIYMAQGELYDRQVAEHEMLHDLLQRGDHLPVFQACGV* |
Ga0070708_1015163351 | 3300005445 | Corn, Switchgrass And Miscanthus Rhizosphere | GSSYSCPAYEGRCDGWWRSPHTIYMAQGELYDRQVAEHEMLHDLLQRGDHPPVFQACGV* |
Ga0066689_107340861 | 3300005447 | Soil | PHTIYMAQGLVYNRRLAEHEMLHDLLQRGGHPPVFQACGV* |
Ga0066681_103247801 | 3300005451 | Soil | WYEVPGVDYPCPAYEGRCDGWWQPPHTIYLAYRWRNDRQLVEHEMLHDLLQRGDHPPVFHACGV* |
Ga0070707_1002923391 | 3300005468 | Corn, Switchgrass And Miscanthus Rhizosphere | PPHTIYLAHRWRNDRQLVEHEMLHDLLQRGDHPPVFQACGVL* |
Ga0070695_1001630093 | 3300005545 | Corn, Switchgrass And Miscanthus Rhizosphere | YEVPGSSYSCPAYEGRCDGWWRSPHTIYMAQGELYDRHVAEHEMLHDLLQRGDHPPVFQACGV* |
Ga0066704_106836181 | 3300005557 | Soil | AYEGRCDGWWRSPHTIYMAQGLLYNRRLAEHEMLHDLLQRGDHPPVFQACGV* |
Ga0066670_102880222 | 3300005560 | Soil | AYEGRCDGWWHPPHTIYLADRWRADRQLVEHEMLHDLLQRGDHPPVFQACGV* |
Ga0066703_105710622 | 3300005568 | Soil | DYPCPAYEGRCDGWWHPPHTIFLAYRWRDDRQLVEHEMLHDLLQRGDHPPVFQACGV* |
Ga0079221_100706324 | 3300006804 | Agricultural Soil | GRCEGWWQPPNTIYMASDEIGNRQLAEHEMLHDLLQTGAHPPAFAQCGVLTQKAW* |
Ga0079221_105251062 | 3300006804 | Agricultural Soil | MRLRLGWLCWWRSPHTIYMAQGLLYNRRLAEHEMLHDLLQRGDHPPVFQACGV* |
Ga0079220_101860791 | 3300006806 | Agricultural Soil | IYLAHRWRNDSRLVEHEMLHDLLQRGDHPPVFQACGVL* |
Ga0075426_101495731 | 3300006903 | Populus Rhizosphere | SPHTIYMAQGLLYNRRLAEHEMLHDLLQRGDHPPVFQACGV* |
Ga0075426_103985342 | 3300006903 | Populus Rhizosphere | GWWRSPHTIYMAQGLLYNRRLAEHEMLHDLLQRGDHPPVFQACGV* |
Ga0099791_101065192 | 3300007255 | Vadose Zone Soil | ELYEVPGSSYWCPAYEGRCDGWWRSPHTIYMSQDQLYDRQLAEHEMLHDLLQRGDHPPVFQACGV* |
Ga0099793_103911662 | 3300007258 | Vadose Zone Soil | YEVPGSSYWCPAYEGRCDGWWRSPHTIYMSQDQLYDRQLAEHEMLHDLLQRGDHPPVFQACGV* |
Ga0066710_1028523952 | 3300009012 | Grasslands Soil | PHTIYMAQSRLYDRQLAEHEMLHDLLQRGDHPLVFQACGV |
Ga0066710_1036683112 | 3300009012 | Grasslands Soil | YPCPAYEGRCEGWWQPPHTIYMAQDQTGNRQLAEHEMLHDLLQRGDHPLVFVACGVATQSAW |
Ga0066710_1040691801 | 3300009012 | Grasslands Soil | MAQGLLYNRRLAEHEMLHDLLQRGDHPPVFQACGV |
Ga0099829_109685011 | 3300009038 | Vadose Zone Soil | YEGRCDGWWRSPHTIYMAQGLLHNRRLAEHEMLHDLLQRGDHPPVFQACGV* |
Ga0066709_1004285023 | 3300009137 | Grasslands Soil | HTIYLAYRWRNDRQLVEHEMLHDLLQRGDHPPVFQACGV* |
Ga0066709_1004677121 | 3300009137 | Grasslands Soil | GSSYPCPAYEGRCEGWWQPPHTIYMAQDQTGNRQLAEHEMLHDLLQRGDHPLVFVACGVATQSAW* |
Ga0066709_1038907022 | 3300009137 | Grasslands Soil | WWRSPHTIYMAQTRLYNRQLAEHEMLHDLLQRGDHPPVFQACGV* |
Ga0134086_101698261 | 3300010323 | Grasslands Soil | PHTIYMAQGLLYNRRLAEHEMLHDLLQRGDHPPVFQACGV* |
Ga0134111_103153902 | 3300010329 | Grasslands Soil | PAYEGRCDGWWQPAHTIYLAYRWRNDRQLVEHEMLHDLLQRGDHPPVFQACGV* |
Ga0134071_102118082 | 3300010336 | Grasslands Soil | EWYEVPGSSYSCPAHEGRCDGWWRSPHTVYMSQDQLYDRQLAEHEMLHDLLQRGDHPPVFQACGV* |
Ga0134062_100078196 | 3300010337 | Grasslands Soil | WWRAPHTIYMAQGRLYDRQVAEHEMLHDLLQRGDHPPVFRACGV* |
Ga0137391_110026141 | 3300011270 | Vadose Zone Soil | AYEGQCDGWWRSPHTIYMAQGLLYNRRLAEHEMLHDLLQRGDHPPVFQACGV* |
Ga0137388_102642131 | 3300012189 | Vadose Zone Soil | EWYEVPGSSYSCPAYEGRCDGWWRSPHTIYMAQGQLYDRQVAEHEMLHDLLQRGDHPPVFQACGV* |
Ga0137364_112630521 | 3300012198 | Vadose Zone Soil | VPGSSYSCPAYEGRCDGWWRSPHTIYMAQTRLNDRQLAEHEMLHDLLQQGDHPPVFQACGV* |
Ga0137382_105655281 | 3300012200 | Vadose Zone Soil | EVPGSSYSCPAYEGRCDGWWRAPHTIYMAQNRLYDRQLAEHEMLHDLLQRGDHPPVFQACGV* |
Ga0137382_111380811 | 3300012200 | Vadose Zone Soil | AYEGRCDGWWRSPHTIYMAQTRLNDRQLAEHEMLHDLLQRGDHPPVFQACGV* |
Ga0137382_111660692 | 3300012200 | Vadose Zone Soil | CDGWWRSPHTIYMAQGQLYDRQLAEHEMLHDLLQRGDHPPVFQACGV* |
Ga0137365_101394912 | 3300012201 | Vadose Zone Soil | VPGVDYPCPAYEGRCDGWWQPPHTIYLAYRWRNDRQLVEHEMLHDLLQRGDHPPVFQACGV* |
Ga0137374_107285872 | 3300012204 | Vadose Zone Soil | YTNGCAGWWQPPHTIYMAQTRLNDRRLVEHEMLHDLLQRSDHPPGFKTCGV* |
Ga0137362_113761291 | 3300012205 | Vadose Zone Soil | CPAYEGRCDGWWRSPHTVYMSQDQLYDRQLAEHEMLHDLLQRGDHPPVFQACGV* |
Ga0137381_107639952 | 3300012207 | Vadose Zone Soil | CPAYEGQCDGWWRSPHTIYMAQGLLYNRRLAEHEMLHDLLQRGDHLPVFQACGV* |
Ga0137376_116187901 | 3300012208 | Vadose Zone Soil | SYSCPAYEGRCDGWWRSPHTIYMAQTRLNDRQLAEHEMLHDLLQQGDHPPVFQACGV* |
Ga0137377_102992211 | 3300012211 | Vadose Zone Soil | GECAGWWQPPHTIYLAETRVHDRLLVEHEMLHDLLQRGDHPPVFQTCGVAVQSAR* |
Ga0137370_107420002 | 3300012285 | Vadose Zone Soil | LCDGWWRSPHTIYMAHSRLYDRQLAEHEMLHDLLQRGDHPPVFQACGV* |
Ga0137387_100605644 | 3300012349 | Vadose Zone Soil | DGWWRAPHTIYMAQSRLYDRQLAEHEMLHDLLQRGDHPPLFQACGV* |
Ga0137387_110939031 | 3300012349 | Vadose Zone Soil | RSPHTIYMAQGRLYDRQLAEHEMLHDLLQRGDHPPVFQACGV* |
Ga0137387_113283181 | 3300012349 | Vadose Zone Soil | CDGWWRSPHTIYMAQGLLYNRRLAEHEMLHDLLQRGDHPPVFQACGV* |
Ga0137372_101137884 | 3300012350 | Vadose Zone Soil | VDYPCPAYEGRCDGWWQPPHTIYLAYRWRNDRQLVEHEMLHDLLQRGDHPPVFQACGV* |
Ga0137386_100272103 | 3300012351 | Vadose Zone Soil | VEWYEVPGVDYPCPAYEGRCDGWWQPPHTIYLAYRWRSDRQLVEHEMVHDLLQRGDHPPEFQACGV* |
Ga0137386_105278032 | 3300012351 | Vadose Zone Soil | PAYEGRCEGWWQPPHTIYMAQDQTGNRQLAEHEMLHDLLQRGDHPLVFVACGVATQSAW* |
Ga0137386_112346702 | 3300012351 | Vadose Zone Soil | PHTIYMAQGLLYNRRLAEHEMLHDLLQRGDHLPVFQACGV* |
Ga0137371_109310092 | 3300012356 | Vadose Zone Soil | GWWQPPHTIYLAYRWRNDRQLVEHEMLHDLLQRGDHPPVFQACGV* |
Ga0134036_12646931 | 3300012384 | Grasslands Soil | HTIYLAQGRLYDRQVAEHEMLHDLLQRGDHPPVFRACGV* |
Ga0134060_10998461 | 3300012410 | Grasslands Soil | VEWYEVPGSSYSCPAHEGRCDGWWRSPHTVYMSQDQLYDRQLAEHEMLHDLLQRGDHPPVFQACGV* |
Ga0137358_110172741 | 3300012582 | Vadose Zone Soil | SPHTIYMARGQLYDRQVAEHEMLHDLLQRGDHPPVFQACGV* |
Ga0137416_104179422 | 3300012927 | Vadose Zone Soil | YEVPGSSYSCPAYEGRCDGWWRSPHTIYMAQGQLYDRHLAEHEMLHDLLQRGDHPPVFQACGV* |
Ga0137407_103133051 | 3300012930 | Vadose Zone Soil | PHTIYMAQGQLYDRQVAEHEMLHDLLQRGDHPPVFQACGV* |
Ga0134081_100577072 | 3300014150 | Grasslands Soil | CDGWWRAPHTIYMAQSRLYDRQVAEHEMLHDLLQRGDHPPVFRACGV* |
Ga0134079_102153382 | 3300014166 | Grasslands Soil | EWYEVPGVDYPCPAYEGRCDGWWQPPHTIYLAYRWRNDRQLVEHEMLHDLLQRGDHPPVFHACGV* |
Ga0134079_104090551 | 3300014166 | Grasslands Soil | WWHPPHTIFLAYRWRDDRQLVEHEMLHDLLQRGDHPPVFQACGV* |
Ga0137420_10174531 | 3300015054 | Vadose Zone Soil | RADGCDGWWRSPHTIYMSQDQLYDRQLAEHEMLHDLLQRGDHPPVFQACGV* |
Ga0137420_10812181 | 3300015054 | Vadose Zone Soil | MAQGQRYDRQVAEHEMLHDLLQRGDHPPVFQACGV* |
Ga0134089_100184163 | 3300015358 | Grasslands Soil | PHTIYLAETRANDRLLVEHEMLHDLLQRGDHPPAFQACGVAVQSAR* |
Ga0134085_100677321 | 3300015359 | Grasslands Soil | HEGRCDGWWRSPHTIYMAQGRLYDRRLAEHEMLHDLLQRGDHPPVFQACGV* |
Ga0134112_103825262 | 3300017656 | Grasslands Soil | SCPAYDGECAGWWQPPHTIYLAETRVNDRLLVEHEMLHDLLQRGDHPPVFQTCGVAVQSA |
Ga0134112_103937891 | 3300017656 | Grasslands Soil | HTIYMAQGLLYNRRLAEHEMLHDLLQRGDHPPVFQACGV |
Ga0134083_104976381 | 3300017659 | Grasslands Soil | APHLIYMAQQRLDDRRLAEHEMLHDLLGRGDHPSVFQACGL |
Ga0066655_107620493 | 3300018431 | Grasslands Soil | WCRAPHLIYMAEQRLDDRRLAEHEMLHDLLGRGDHPPVFQACGV |
Ga0066667_100112305 | 3300018433 | Grasslands Soil | MAQGRLYDRPLAEHEMLHDLLQRGDHPPVFQACGV |
Ga0066667_104282782 | 3300018433 | Grasslands Soil | WWRSPHTIYMAQTRLYNRQLAEHEMLHDLLQRGDHPPVFQACGV |
Ga0066667_116425171 | 3300018433 | Grasslands Soil | CDGWWHPPHTIYLADRWRADRQLVEHEMLHDLLQRGDHPPVFRACGV |
Ga0066667_119309481 | 3300018433 | Grasslands Soil | LAYRWRNDRQLVEHEMLHDLLQRGDHPPVFHACGV |
Ga0066662_101359433 | 3300018468 | Grasslands Soil | YSCPAYDGECAGWWQPPHTIYLAETRVNDRLLVEHEMLHDLVQRGDHPPVFQACGVAVQSAR |
Ga0207653_100031953 | 3300025885 | Corn, Switchgrass And Miscanthus Rhizosphere | MAQGELYDRQVAEHEMLHDLLQRGDHPPVFQACGV |
Ga0207646_111281711 | 3300025922 | Corn, Switchgrass And Miscanthus Rhizosphere | PAHEGRCDGWWRPPHTIYLAHRWRNDRQLVEHEMLHDLLQRGDHPPVFQACGVL |
Ga0209761_10902643 | 3300026313 | Grasslands Soil | YEGQCDGWWRSPHTIYMAQGLLYNRRLAEHEMLHDLLQGGDHPPVFQACGV |
Ga0209686_10473691 | 3300026315 | Soil | GWWQPPHTIYLAYRWRNDRQLVEHEMLHDLLQRGDHPPVFHACGV |
Ga0209471_11949521 | 3300026318 | Soil | EGRCDGWWHPPHTIFLAYRWRDDRQLVEHEMLHDLLQRGDHPPVFQACGV |
Ga0209470_11670392 | 3300026324 | Soil | GSSYSCPAYEGQCDGWWRAPHTIYMAQSRLYDRQLAEHEMLHDLLQRGDHPPVFRACGV |
Ga0209266_11464032 | 3300026327 | Soil | GQCDGWWRAPHTIYMAQGRLYDRQVAEHEMLHDLLQRGDHPPVFRACGV |
Ga0209266_11960982 | 3300026327 | Soil | HLIYMAEQRLDDRRLAEHEMLHDLLGRGDHPPVFQACGV |
Ga0209808_10148201 | 3300026523 | Soil | RSPHTIYMAQGLVYNRRLAEHEMLHDLLQRGGHPPVFQACGV |
Ga0209378_10373632 | 3300026528 | Soil | MAQSRLYDRQLAEHEMLHDLLQRGDHPLVFQACGV |
Ga0209378_10676241 | 3300026528 | Soil | YPCPAYEGRCEGWWQPPHTIYMAQDQTGNRQLAEHEMLHDLLQRGDHPPVFVACGVATQSAW |
Ga0209156_100091649 | 3300026547 | Soil | AYEGRCDGWWHPPHTIYLADRWRADRQLVEHEMLHDLLQRGDHPPVFQACGV |
Ga0179593_10839503 | 3300026555 | Vadose Zone Soil | MARGQLYDRQVAEHEMLHDLLQRGDHPPAFQACGV |
Ga0209076_11943342 | 3300027643 | Vadose Zone Soil | GSSYTCPAHEGLCDGWWRSPHTIYMAQSRLDDRQLAEHEMLHDLLQRGDHPPVFKACGV |
Ga0209178_11467491 | 3300027725 | Agricultural Soil | PAYDGRCEGWWQPPNTIYMASDEIGNRQLAEHEMLHDLLQTGAHPPAFAQCGVLTQKAW |
Ga0208989_102755941 | 3300027738 | Forest Soil | HTIYMAQSRLHDRQLAEHEMLHDLLQRGDHPPVFKACGV |
Ga0209689_12920601 | 3300027748 | Soil | VDYPCPAYEGRCDGWWQPPHTIYLAYRWRNDRQLVEHEMLHDLLQRGDHPPVFHACGV |
Ga0209073_102025852 | 3300027765 | Agricultural Soil | PHAIYLAHRWRNDSRLVEHEMLHDLLQRGDHPPVFQACGVL |
Ga0209177_101585101 | 3300027775 | Agricultural Soil | PGPDYPCPAYEGRCDGWWQPPHVIYLASQWRYDRPLVEHEMLHDLLQRGDHPPVFQACGV |
Ga0209074_102179792 | 3300027787 | Agricultural Soil | YACPAYDGRCEGWWQPPNTIYMASDEIGNRQLAEHEMLHDLLQTGAHPPAFAQCGVLTQKAW |
Ga0209283_100918091 | 3300027875 | Vadose Zone Soil | WWRSPHTIFMSQDQLYDRQLAEHEMLHDLLQRGDHPPAFQACGV |
Ga0307468_1013804142 | 3300031740 | Hardwood Forest Soil | MAQDQTSNRVLAEHEMLHDLLQRGDHPPVFAACNVSTQREW |
Ga0307471_1000560345 | 3300032180 | Hardwood Forest Soil | SYPCPAYEGRCEGWWQPPHTIYMAQDQTGNRVLAEHEMLHDLLQTGNHPPVFAACGVLSQSEW |
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