Metagenome / Metatranscriptome Family F102803

Overview

Basic Information

• Family ID: F102803
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 101
• Average Sequence Length: 46 residues
• Representative Sequence: MATGNRTLKLSILADVDDLKKKLGEADKAVETNSSKISEFGKKAAAAF
• Number of Associated Samples: 85
• Number of Associated Scaffolds: 101

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Unclassified
• % of genes with valid RBS motifs: 93.75 %
• % of genes near scaffold ends (potentially truncated): 14.85 %
• % of genes from short scaffolds (< 2000 bps): 12.87 %
• Associated GOLD sequencing projects: 81
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.44

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Unclassified (85.149 % of family members)
• NCBI Taxonomy ID: N/A
• Taxonomy: N/A

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater (30.693 % of family members)
• Environment Ontology (ENVO): Unclassified (68.317 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline) (51.485 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 60.53%
  β-sheet: 0.00%
  Coil/Unstructured: 39.47%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF03354	TerL_ATPase	1.98
PF04586	Peptidase_S78	1.98
PF04860	Phage_portal	0.99

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG3740	Phage head maturation protease	Mobilome: prophages, transposons [X]	1.98
COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	Mobilome: prophages, transposons [X]	1.98

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.15 %
All Organisms	root	All Organisms	14.85 %

Level 2

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.15 %
Viruses	superkingdom	All Organisms → Viruses	14.85 %

Level 3

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.15 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	12.87 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.98 %

Level 4

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.15 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	12.87 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.98 %

Level 5

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.15 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	12.87 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.98 %

Level 6

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.15 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	12.87 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.98 %

Level 7

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.15 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	12.87 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.98 %

Level 8

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.15 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	12.87 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.98 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300002274|B570J29581_102792	All Organisms → Viruses → Predicted Viral	1125
3300003395|JGI25917J50250_1013508	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1975
3300005527|Ga0068876_10073006	Not Available	2065
3300007540|Ga0099847_1031459	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1703
3300008114|Ga0114347_1178201	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	732
3300009165|Ga0105102_10450667	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	691
3300009183|Ga0114974_10106088	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1801
3300012964|Ga0153916_10626686	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1153
3300017785|Ga0181355_1230881	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	716
3300020498|Ga0208050_1001229	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	3665
3300020553|Ga0208855_1012770	All Organisms → Viruses → Predicted Viral	1340
3300021140|Ga0214168_1073774	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	763
3300023179|Ga0214923_10090621	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2105
3300027693|Ga0209704_1020693	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1671
3300031539|Ga0307380_11142542	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	609
3300034012|Ga0334986_0168765	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1248

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	96.04%
Terrestrial	Environmental → Terrestrial	3.96%

Category

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	86.14%
Marine	Environmental → Aquatic → Marine	9.90%
Soil	Environmental → Terrestrial → Soil	1.98%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	1.98%

Type

Habitat	Taxonomy	Distribution
Lake	Environmental → Aquatic → Freshwater → Lake	46.53%
Lentic	Environmental → Aquatic → Freshwater → Lentic	27.72%
Coastal	Environmental → Aquatic → Marine → Coastal	6.93%
Sediment	Environmental → Aquatic → Freshwater → Sediment	4.95%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	4.95%
Clay	Environmental → Terrestrial → Soil → Clay	1.98%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	1.98%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.99%
River	Environmental → Aquatic → Freshwater → River	0.99%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	0.99%
Unclassified	Environmental → Aquatic → Marine → Unclassified	0.99%
Pelagic	Environmental → Aquatic → Marine → Pelagic	0.99%

Subtype

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	42.57%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	19.80%
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	7.92%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	6.93%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	4.95%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	4.95%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	3.96%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	1.98%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	1.98%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.99%
Unclassified	Environmental → Aquatic → Freshwater → River → Unclassified	0.99%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	0.99%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	0.99%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	0.99%

Habitat

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	30.69%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	16.83%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	7.92%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	5.94%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	4.95%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	3.96%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	3.96%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	3.96%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	3.96%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	2.97%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	1.98%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	1.98%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	1.98%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.99%
Aquatic	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Aquatic	0.99%
Freshwater	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater	0.99%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	0.99%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	0.99%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	0.99%
Pelagic Marine	Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine	0.99%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface	0.99%
Deep Subsurface Sediment	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment	0.99%

Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OID	Sample Name	Habitat Type
3300002274	Freshwater microbial communities from Lake Mendota, WI - 12OCT2012 deep hole epilimnion	Environmental
3300002297	Freshwater microbial communities from Lake Mendota, WI - 17AUG2012 deep hole epilimnion	Environmental
3300002306	Freshwater microbial communities from Lake Mendota, WI - 31AUG2012 deep hole epilimnion	Environmental
3300002362	Freshwater microbial communities from Lake Mendota, WI - 03AUG2012 deep hole epilimnion	Environmental
3300003395	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.SN	Environmental
3300003431	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MLB.SN	Environmental
3300005525	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel6S_1000h metaG	Environmental
3300005527	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG	Environmental
3300006030	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA	Environmental
3300006805	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA	Environmental
3300006920	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12	Environmental
3300007540	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG	Environmental
3300007559	Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.541	Environmental
3300008114	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-C-NA	Environmental
3300008450	Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigs	Environmental
3300009081	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015	Environmental
3300009085	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 10-12cm September2015	Environmental
3300009159	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG	Environmental
3300009165	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 1-3cm September2015	Environmental
3300009169	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm May2015	Environmental
3300009183	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG	Environmental
3300009435	Pelagic marine microbial communities from North Sea - COGITO_mtgs_100413	Environmental
3300011009	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_0.1_0.8_DNA	Environmental
3300012707	Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES154 metaT (Metagenome Metatranscriptome)	Environmental
3300012720	Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES141 metaT (Metagenome Metatranscriptome)	Environmental
3300012723	Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES129 metaT (Metagenome Metatranscriptome)	Environmental
3300012734	Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES144 metaT (Metagenome Metatranscriptome)	Environmental
3300012964	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 4 metaG	Environmental
3300013004	Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG	Environmental
3300013074	Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES147 metaT (Metagenome Metatranscriptome)	Environmental
3300013295	northern Canada Lakes metatranscriptome co-assembly	Environmental
3300014811	Aquatic viral communities from ballast water - Michigan State University - AB_ballast water	Environmental
3300017722	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.S.N	Environmental
3300017736	Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.D.N	Environmental
3300017785	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.D.N	Environmental
3300019784	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D	Environmental
3300020159	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1	Environmental
3300020172	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1	Environmental
3300020498	Freshwater microbial communities from Lake Mendota, WI - 13JUN2010 deep hole epilimnion (SPAdes)	Environmental
3300020533	Freshwater microbial communities from Lake Mendota, WI - 08JUN2012 deep hole epilimnion (SPAdes)	Environmental
3300020536	Freshwater microbial communities from Lake Mendota, WI - 02JUN2012 deep hole epilimnion (SPAdes)	Environmental
3300020551	Freshwater microbial communities from Lake Mendota, WI - 27JUL2010 deep hole epilimnion ns (SPAdes)	Environmental
3300020553	Freshwater microbial communities from Lake Mendota, WI - 17MAY2012 deep hole epilimnion (SPAdes)	Environmental
3300020554	Freshwater microbial communities from Lake Mendota, WI - 17AUG2012 deep hole epilimnion (SPAdes)	Environmental
3300021140	Freshwater microbial communities from Lake Mendota, WI - Practice 29OCT2010 epilimnion	Environmental
3300021961	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D	Environmental
3300023179	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510	Environmental
3300024239	Subsurface sediment microbial communities from gas well in Oklahoma, United States - OK STACK MC-2-E	Environmental
3300025445	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_>0.8_DNA (SPAdes)	Environmental
3300025887	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_>0.8_DNA (SPAdes)	Environmental
3300027600	Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Atlam_RepA_8h	Environmental
3300027693	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 1-3cm September2015 (SPAdes)	Environmental
3300027710	Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)	Environmental
3300027733	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)	Environmental
3300027772	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SD (SPAdes)	Environmental
3300027782	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)	Environmental
3300027798	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD (SPAdes)	Environmental
3300027804	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN (SPAdes)	Environmental
3300027806	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel6S_1000h metaG (SPAdes)	Environmental
3300029268 (restricted)	Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_19m	Environmental
3300031539	Soil microbial communities from Risofladan, Vaasa, Finland - UN-3	Environmental
3300031565	Soil microbial communities from Risofladan, Vaasa, Finland - UN-2	Environmental
3300031758	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123	Environmental
3300031834	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_0	Environmental
3300031951	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120	Environmental
3300032050	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA122	Environmental
3300032053	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_16	Environmental
3300032118	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_15	Environmental
3300032401	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G03_0	Environmental
3300033981	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011	Environmental
3300033993	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037	Environmental
3300034012	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027	Environmental
3300034019	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Sep2014-rr0049	Environmental
3300034062	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045	Environmental
3300034063	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Oct2008D10-rr0053	Environmental
3300034066	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087	Environmental
3300034082	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088	Environmental
3300034092	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME03Aug2012-rr0069	Environmental
3300034101	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107	Environmental
3300034104	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120	Environmental
3300034106	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131	Environmental
3300034112	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Aug2014-rr0191	Environmental
3300034118	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Aug2017-rr0165	Environmental
3300034280	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME10Aug2009-rr0048	Environmental
3300034355	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Oct2015-rr0135	Environmental

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
B570J29581_1027924	3300002274	Freshwater	MATGNRTLKLSILADVDDLKKKLGEADKAVESNSSKISEFG
B570J29603_1004557	3300002297	Freshwater	MATGNRTLKLSILADVDDLKKKLGEADKAVETNSSRIADF
B570J29618_10076181	3300002306	Freshwater	MATGNRTLKLSILADVDDLKKKLGEADKAVESNSSKIADFG
B570J29607_1004786	3300002362	Freshwater	MATGNRTLKLSILADVDDLKKKLGEADKAVETNSSRIADFGKKAAA
JGI25917J50250_10135081	3300003395	Freshwater Lake	MATGNRTLKLSILADVDDLKKKLGEADKAVETNASKIADFGKKAAAAFAVAAAA
JGI25913J50563_10191841	3300003431	Freshwater Lake	VARDTRTLSLKILADIDDLKNKLNQADNAVETNSEKISAFGKKAAAA
Ga0068877_106878562	3300005525	Freshwater Lake	MATGNRTLKLSILADVDDLKKKLGDADKAVEENSNKISEFGKKAAAAFAVVG
Ga0068876_100730066	3300005527	Freshwater Lake	MATGNRTLKLSILADVDDLKKKLGEADKAVETNSSKISEFGKKAAAAF
Ga0075470_102280222	3300006030	Aqueous	MATGNRTLKLSILADVDDLKKKLGEADKAVENNSNKISEFGK
Ga0075464_109361042	3300006805	Aqueous	MATGSRTLKLSILADVDDLKKKLGEADKAVESNASKISEFGKKAAAAFAVAAAA
Ga0070748_12439281	3300006920	Aqueous	MARDTRTLSLKILADIDDLKNKLNEADNAVETNSEKISAFGKKAAAAFA
Ga0099847_10314591	3300007540	Aqueous	MGVMATGNRTLKLSILADVDDLKKKLGEADKSVESNQKK
Ga0102828_10574911	3300007559	Estuarine	VGIVARDTRTLSLKILADIDDLKNKLNQADNAVETNSEKISAFGKKAAAAFAV
Ga0114347_10544207	3300008114	Freshwater, Plankton	MATGNRTLKLSILADVDDLKKKLGEADKAVETNSSKISEFGKKAAA
Ga0114347_11782013	3300008114	Freshwater, Plankton	MATGNRTLKLSILADVDDLKKKLGDADKAVESNSSKISEFGKKAAAAFAVAAAAA
Ga0114880_10684031	3300008450	Freshwater Lake	MATGNRTLKLSILADVDDLKKKLGDADKAVESNSSKISEFGKKAAAA
Ga0114880_11022934	3300008450	Freshwater Lake	MATGNRTLKLSILADVDELKKSLKTGETEVKGFSDKVSDFGKKAAAAFA
Ga0105098_103953513	3300009081	Freshwater Sediment	MAGNRTLKLSILADVDDLNKKLKAANTDVESSSDKISKFGKAAAAAFAIA
Ga0105103_104388542	3300009085	Freshwater Sediment	MATGNRTLKLSILADVDDLKKKLGEADKAVESNSSKISEFGKKAAAAFAVLLLLPLPMALN*
Ga0114978_104371611	3300009159	Freshwater Lake	MASDNRTLKLSILADVDELKKGLASANKEVESTADKIGEFGKKAALAFAAV
Ga0105102_104506673	3300009165	Freshwater Sediment	MAIGSRTLKLSILADVDDLKKKLGEADKAVETNANKVSDFGKK
Ga0105097_102502551	3300009169	Freshwater Sediment	MATGNRTLKLSILADVDDLKKKLGEADKSVEDNSKKISEFGNKEA
Ga0114974_101060885	3300009183	Freshwater Lake	MATGNRTLKLSILADVDELKKSLGDANKSVETSADKIADFGKKVSAAGVNSVIA*
Ga0115546_13199092	3300009435	Pelagic Marine	MATGNRTLKLSILADVDDLKKKLGEADKAVETNASKITEFGKKAAAAFA
Ga0129318_102337872	3300011009	Freshwater To Marine Saline Gradient	MATGNRTLKLSILADVDDLKKKLDEADKAVESNSSKISEFGKKAAAAFAVAAAAA
Ga0157623_10023001	3300012707	Freshwater	MATGSRTLKLSILADVDDLKKKLGEADKAVESNASKISEFGKKAAAAF
Ga0157613_11239771	3300012720	Freshwater	MAKDNRTLKLSILADVDDLKKKLGEADKAVETNADK
Ga0157604_10472285	3300012723	Freshwater	MATGNRTLKLSILADVDDLKKKLGEADKAVESNASKISEFGKK
Ga0157615_12077911	3300012734	Freshwater	MATGNRTLKLSILADVDDLKKKLGEADKAVETNSSKIGE
Ga0157615_12765081	3300012734	Freshwater	MATGNRTLKLSILADVDDLKKKLGEADKAVESNSSKISEFGKK
Ga0153916_106266864	3300012964	Freshwater Wetlands	MATGNRTLKLSILADVDDLKKKLDAGSKEVETFGDKVAGFGKAAGLAF
Ga0164293_109293791	3300013004	Freshwater	MATGNRTLKLSILADVDDLKKKLGEADKAVESNSSKISEF
Ga0157618_10076191	3300013074	Freshwater	MATGNRTLKLSILADVDDLKKKLNEANGDVEVAATGMEKFGNKAAA
Ga0170791_146220381	3300013295	Freshwater	MGLMATGNRTLKLSILADVDDLKKKLGEADKAVED
Ga0170791_150976914	3300013295	Freshwater	MATGNRTLKLSILADVDELKKSLGEANKTVETSAD
Ga0119960_10665951	3300014811	Aquatic	MATGNRTLKLSILADVDDLKKKLGEADKAVENNSSKICRS*
Ga0181347_11563582	3300017722	Freshwater Lake	MATGNRTLKLSILADVDELKKGLASANKEVESTADKIGEFGK
Ga0181365_11308301	3300017736	Freshwater Lake	MATGNRTLKLSILADVDDLKKKLGEADNAVETNSEKISAF
Ga0181365_11595081	3300017736	Freshwater Lake	MARDTRTLKLSILADVDDLKKKLGEADKAVETNASKIADFGKKAAAAFAVA
Ga0181355_12308813	3300017785	Freshwater Lake	MASDSRTLKLSILADVDDLKKKLGEADKAVETNASKIADFG
Ga0181355_12643972	3300017785	Freshwater Lake	MATGNRTLKLSILADVDDLKKKLGEADNAVQTNSEKISAFGKKAAAAFAVA
Ga0181359_11422993	3300019784	Freshwater Lake	MAGNRTLKLSILADVDDLKKKLGDGNQEVEGFGAKVGEFGKKAGAAFAVA
Ga0181359_11431101	3300019784	Freshwater Lake	MATGNRTLKLSILADVDDLKKKLGEADNAVQTNSEKIAAFGKKAAAA
Ga0211734_102479847	3300020159	Freshwater	MATGSRTLKLSILADVDDLKKKLGEADKAVAENSSKIAEFGK
Ga0211729_108537131	3300020172	Freshwater	MATGSRTLKLSILADVDDLKKKLGEADKAVAENSSKIAEFGKKAAVAFAVAGAA
Ga0208050_10012291	3300020498	Freshwater	MATGNRTLKLSILADVDDLKKKLGDADKAVESNASKISEFGKK
Ga0208364_10524932	3300020533	Freshwater	MATGNRTLKLSILADVDDLKKKLGDADKAVESNASKISEFGKKAALAFTVA
Ga0207939_10105461	3300020536	Freshwater	MATGNRTLKLSILADVDDLKKKLGEADKAVETNSSRIADFGKKAAAAFAVAAAAAV
Ga0208360_10229503	3300020551	Freshwater	MARDSRTLSLKILADIDDLKKKLDQADNAVETNSQKIAAFGKKAAAAFAVAAAA
Ga0208855_10127701	3300020553	Freshwater	MAKDNRTLKLSILADVDDLKKKLGEADKAVETNADKISDFGKKAALAFAAAGAAATAFAI
Ga0208599_10302861	3300020554	Freshwater	MATGNRTLKLSILADVDDLKKKLGEADKAVESNSSKISEFGKKA
Ga0214168_10737743	3300021140	Freshwater	MATGNRTLKLSILADVDDLKKKLGDADKAVESNASKISEFGKKAALAFTVAAAAAVAYAGKLAIDGV
Ga0222714_103128561	3300021961	Estuarine Water	MARDTRTLSLKILADIDDLKNKLNQADNAVETNSEKISAFGKKAAAAFAVAAA
Ga0214923_100906216	3300023179	Freshwater	MARDTRTLSLKILADIDDLKKKLNEADGSVETSSSKIADYGKKAAAA
Ga0247724_10089761	3300024239	Deep Subsurface Sediment	MAGNRTLKLSILADVDDLKKKLGQGEKEVQGFGDKLGEFGKKAAAAFAVAA
Ga0208424_10228882	3300025445	Aqueous	MAGNRTLKLSILADVDDLRKKLGEGSREVQTFGSKLKDFGKKAGVVLAAVGAA
Ga0208544_103716821	3300025887	Aqueous	MATGSRTLKLSILADVDDLKKKLGEADNAVESNSSKISEFG
Ga0255117_10098807	3300027600	Freshwater	VARDTRTLSLKILADIDDLKNKLNQADNAVETNSQKISAFGKKAAAAFA
Ga0209704_10206931	3300027693	Freshwater Sediment	MARDNRTLKLSILADIDDLKKKLDQADKAVETNSSKIGAFTAKIGKAF
Ga0209599_101688662	3300027710	Deep Subsurface	MATGNRTLKLSILADVDDLKKKLGEADKAVEGNASKISEFGKKAAAA
Ga0209297_11710333	3300027733	Freshwater Lake	MATGNRTLKLSILADVDDLKKKLGEADNAVEGNAN
Ga0209768_101394914	3300027772	Freshwater Lake	MATGNRTLKLSILADVDDLKKKLGEADKAVETNASKIADFGKKAAAAFAVAA
Ga0209768_104391242	3300027772	Freshwater Lake	MASDSRTLKLSILADVDDLKKKLGDADSAVQQNSSKMSEFGKKAALAFA
Ga0209500_102183883	3300027782	Freshwater Lake	MATGNRTLKLSILADVDELKKSLGEANKTVETSADKIADFGKKAALAFA
Ga0209353_101567384	3300027798	Freshwater Lake	VAKDTRTLSLKILADIDDLKNKLNQADNAVETNSEKISAFGKKAAAAFAV
Ga0209358_101682821	3300027804	Freshwater Lake	MAGNRTLKLSILADVDDLKKKLGQGEKEVEGFGNKLGEFGKKAAAAFAVAAAAA
Ga0209358_101898044	3300027804	Freshwater Lake	MATGNRTLKLSILADVDELKKSLGDANKSVETSADKIADF
Ga0209985_101988033	3300027806	Freshwater Lake	MATGNRTLKLSILADVDDLKKKLGDADKAVEENSNKI
(restricted) Ga0247842_103688951	3300029268	Freshwater	MAKDNRTLKLSILADIDDLKKKLDQADKAVETNSNKIGEFSKKIGKAFLVAG
Ga0307380_111425422	3300031539	Soil	MAASRTLKLSILADVDQLKKSLGAADKSVGSSADKMRDFGKK
Ga0307379_103649711	3300031565	Soil	MATGNRTLKLSILADVDDLKKKLGEADKSVEANSKKISDFGKKTALAFAAVGAAAVVFGK
Ga0315907_106438741	3300031758	Freshwater	MATGNRTLKLSILADVDDLKKKLGDADKAVEENSNK
Ga0315290_107296721	3300031834	Sediment	MATGNRTLKLSILADVDDLKKKLGEADNAVETNSEKISAFG
Ga0315904_100278141	3300031951	Freshwater	MATGNRTLKLSILADVDDLKKKLGEADKAVETNSSKISEFGKKAA
Ga0315904_114525582	3300031951	Freshwater	MATGNRTLKLSILADVDDLKKKLGEADNAVESNASKI
Ga0315906_104904033	3300032050	Freshwater	MATGNRTLKLSILADVDDLKKKLGDADKAIKNNSNKISK
Ga0315284_105428574	3300032053	Sediment	MATGNRTLKLSILADVDDLKKKLGEADKAVEDNSNRIADFGKKAALAFAAVGAAAGAF
Ga0315277_115394292	3300032118	Sediment	MASDSRTLKLSILADVDDLKKKLGDADSAVSQNSSKMSEFGKKA
Ga0315275_112954172	3300032401	Sediment	MATGNRTLKLSILADVDDLKKKLGEADNAVETNSEKIAAFGKKAA
Ga0334982_0541707_2_157	3300033981	Freshwater	MATGNRTLKLSILADVDDLKKKLGDADKAVESNSSKISEFGKKAAAAFAVAA
Ga0334994_0202052_968_1072	3300033993	Freshwater	MATGNRTLKLSILADVDDLKKKLGEADKAVETNSS
Ga0334994_0543068_3_167	3300033993	Freshwater	MAKDNRTLKLSILADVDDLKKKLGEADKAVETNADKISDFGKKAALAFAAAGAAA
Ga0334994_0543183_396_530	3300033993	Freshwater	MARDNRTLKLSILADVDDLKKKLGDADKAVETNSSKIAEFGKKAA
Ga0334994_0558634_1_159	3300033993	Freshwater	MASDSRTLKLSILADVDDLKKKLGDADSAVAQNSSKMSEFGKKAAAAFAIAAA
Ga0334986_0168765_1134_1247	3300034012	Freshwater	MATGNRTLKLSILADVDDLKKKLGEADKAVENNSSKIS
Ga0334986_0242438_847_984	3300034012	Freshwater	MATGNRTLKLSILADVDDLKKKLGEADKAVETNASKIAEFGKKAAA
Ga0334998_0532188_3_155	3300034019	Freshwater	MGIMASDSRTLKLSILADVDDLKKKLGDADSAVAQNSSKMSEFGKKAAAAF
Ga0334995_0607106_494_634	3300034062	Freshwater	MARDSRTLSLKILADIDDLKKKLDQADNAVETNSQKISAFGKKAAAA
Ga0335000_0256557_938_1093	3300034063	Freshwater	MATGNRTLKLSILADVDDLKKKLGEADKAVESNSSKISEFGKKAAAAFAVAA
Ga0335019_0769800_416_544	3300034066	Freshwater	MARDNRTLKLSILADVDDLKKKLGEADKAVETNADKISDFGKK
Ga0335020_0007678_6531_6674	3300034082	Freshwater	MATGNRTLKLSILADVDDLKKKLGEADKAVETNSSKIGEFGKKAAAAF
Ga0335010_0279807_1_150	3300034092	Freshwater	MAKDNRTLKLSILADVDDLKKKLGEADKAVETNADKISDFGKKAALAFAA
Ga0335010_0398829_2_148	3300034092	Freshwater	MARDSRTLSLKILADIDDLKKKLDQADNAVESNSQKISAFGKKAAAAFA
Ga0335027_0203606_1276_1401	3300034101	Freshwater	MATGNRTLKLSILADVDDLKKKLGEADKAVESNSSKISEFGK
Ga0335031_0341247_2_157	3300034104	Freshwater	MGLMAKDNRTLKLSILADVDDLKKKLGEADKSVENNANKISEFGKKAALAFA
Ga0335036_0366988_3_116	3300034106	Freshwater	MARDNRTLKLSILADVDDLKKKLGEADKSVETNANKIS
Ga0335036_0744825_3_140	3300034106	Freshwater	MATGNRTLKLSILADVDDLKKKLDQADKAVETNSDKISAFGKKAAA
Ga0335066_0350791_2_151	3300034112	Freshwater	MARDSRTLSLKILADIDDLKKKLDQADNAVESNSEKISAFGKKAAAAFAV
Ga0335053_0583087_505_645	3300034118	Freshwater	MATGNRTLKLSILADVDDLKKKLGEADKAVDTNATKISDFGKKAALA
Ga0334997_0356273_1_147	3300034280	Freshwater	MATGNRTLKLSILADVDDLKKKLGDADKAVESNSSKISEFGKNAAAAFA
Ga0335039_0402020_569_703	3300034355	Freshwater	MATGNRTLKLSILADVDELKKGLGEANKSVESSADKIADFGKKAA