Metagenome / Metatranscriptome Family F102800

Basic Information
Family ID	F102800
Family Type	Metagenome / Metatranscriptome
Number of Sequences	101
Average Sequence Length	47 residues
Representative Sequence	VSKILEASRAGALAAPARRPFRLGAFVERESVFSWLMLTPPLLFLL
Number of Associated Samples	97
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	60.40 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	93.07 %
Associated GOLD sequencing projects	95
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.39

Most Common Taxonomy
Group	Bacteria (99.010 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (13.861 % of family members)
Environment Ontology (ENVO)	Unclassified (37.624 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (43.564 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 52.70% β-sheet: 0.00% Coil/Unstructured: 47.30%
Feature Viewer

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Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF01547	SBP_bac_1	41.58
PF13416	SBP_bac_8	18.81
PF04055	Radical_SAM	0.99
PF00850	Hist_deacetyl	0.99
PF10518	TAT_signal	0.99
PF00528	BPD_transp_1	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG0123	Acetoin utilization deacetylase AcuC or a related deacetylase	Secondary metabolites biosynthesis, transport and catabolism [Q]	1.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	99.01 %
Unclassified	root	N/A	0.99 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	99.01 %
Unclassified	root	N/A	0.99 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	99.01 %
Unclassified	root	N/A	0.99 %

Name	Rank	Taxonomy	Distribution
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	82.18 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	10.89 %
Unclassified	root	N/A	0.99 %

Name	Rank	Taxonomy	Distribution
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	82.18 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	9.90 %
Unclassified	root	N/A	0.99 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	82.18 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	7.92 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.99 %
Unclassified	root	N/A	0.99 %

Name	Rank	Taxonomy	Distribution
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	13.86 %
unclassified Rhodospirillales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales	7.92 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.99 %
Unclassified	root	N/A	0.99 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	13.86 %
Rhodospirillales bacterium URHD0017	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	6.93 %
Rhodospirillales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	0.99 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.99 %
Unclassified	root	N/A	0.99 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	13.86 %
Rhodospirillales bacterium URHD0017	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	6.93 %
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	0.99 %
Rhodospirillales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	0.99 %
Unclassified	root	N/A	0.99 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002122\|C687J26623_10001126	All Organisms → cellular organisms → Bacteria	5472	Open in IMG/M
3300002908\|JGI25382J43887_10134376	All Organisms → cellular organisms → Bacteria	1273	Open in IMG/M
3300002911\|JGI25390J43892_10053898	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	946	Open in IMG/M
3300003347\|JGI26128J50194_1012751	All Organisms → cellular organisms → Bacteria	527	Open in IMG/M
3300004633\|Ga0066395_10456409	All Organisms → cellular organisms → Bacteria → Proteobacteria	729	Open in IMG/M
3300004803\|Ga0058862_12798773	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1567	Open in IMG/M
3300005167\|Ga0066672_10234850	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1177	Open in IMG/M
3300005175\|Ga0066673_10595635	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	644	Open in IMG/M
3300005332\|Ga0066388_104928315	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	679	Open in IMG/M
3300005440\|Ga0070705_100271397	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	1201	Open in IMG/M
3300005440\|Ga0070705_100487938	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	932	Open in IMG/M
3300005445\|Ga0070708_100778693	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	899	Open in IMG/M
3300005459\|Ga0068867_100303173	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1318	Open in IMG/M
3300005471\|Ga0070698_100350288	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1408	Open in IMG/M
3300005518\|Ga0070699_101142515	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	714	Open in IMG/M
3300005536\|Ga0070697_100458904	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	1110	Open in IMG/M
3300005552\|Ga0066701_10067244	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	2020	Open in IMG/M
3300005557\|Ga0066704_10702858	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	637	Open in IMG/M
3300005578\|Ga0068854_101776559	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	565	Open in IMG/M
3300005718\|Ga0068866_11411367	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	509	Open in IMG/M
3300006034\|Ga0066656_10667426	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	669	Open in IMG/M
3300006049\|Ga0075417_10417573	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	665	Open in IMG/M
3300006806\|Ga0079220_10151259	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1281	Open in IMG/M
3300006845\|Ga0075421_102338568	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	561	Open in IMG/M
3300006904\|Ga0075424_100536349	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1249	Open in IMG/M
3300007076\|Ga0075435_101236531	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	654	Open in IMG/M
3300009038\|Ga0099829_11357356	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	587	Open in IMG/M
3300009090\|Ga0099827_10905078	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	764	Open in IMG/M
3300009098\|Ga0105245_11338376	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	765	Open in IMG/M
3300009148\|Ga0105243_11702460	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	660	Open in IMG/M
3300009174\|Ga0105241_10822239	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	857	Open in IMG/M
3300010043\|Ga0126380_10588342	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	874	Open in IMG/M
3300010303\|Ga0134082_10259782	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	721	Open in IMG/M
3300010304\|Ga0134088_10031771	All Organisms → cellular organisms → Bacteria	2384	Open in IMG/M
3300010320\|Ga0134109_10086226	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1080	Open in IMG/M
3300010322\|Ga0134084_10074082	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1045	Open in IMG/M
3300010329\|Ga0134111_10463684	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	551	Open in IMG/M
3300010366\|Ga0126379_10500218	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1287	Open in IMG/M
3300010375\|Ga0105239_10794638	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1084	Open in IMG/M
3300012040\|Ga0137461_1039364	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1261	Open in IMG/M
3300012096\|Ga0137389_10041267	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	3428	Open in IMG/M
3300012096\|Ga0137389_11417494	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	590	Open in IMG/M
3300012207\|Ga0137381_11401759	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	591	Open in IMG/M
3300012351\|Ga0137386_10740986	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	706	Open in IMG/M
3300012359\|Ga0137385_10577349	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	947	Open in IMG/M
3300012360\|Ga0137375_10271800	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1551	Open in IMG/M
3300012361\|Ga0137360_10897991	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	764	Open in IMG/M
3300012362\|Ga0137361_10463759	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1163	Open in IMG/M
3300012582\|Ga0137358_10572293	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	759	Open in IMG/M
3300012929\|Ga0137404_11817231	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	567	Open in IMG/M
3300012930\|Ga0137407_10008300	All Organisms → cellular organisms → Bacteria	7211	Open in IMG/M
3300012971\|Ga0126369_12779473	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	573	Open in IMG/M
3300012987\|Ga0164307_10145723	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1552	Open in IMG/M
3300014150\|Ga0134081_10315011	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	565	Open in IMG/M
3300014308\|Ga0075354_1003936	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1878	Open in IMG/M
3300015358\|Ga0134089_10579974	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	500	Open in IMG/M
3300016319\|Ga0182033_10294730	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1336	Open in IMG/M
3300017654\|Ga0134069_1058712	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1218	Open in IMG/M
3300017659\|Ga0134083_10083136	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1246	Open in IMG/M
3300017961\|Ga0187778_10685377	Not Available	692	Open in IMG/M
3300018028\|Ga0184608_10194064	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	888	Open in IMG/M
3300018051\|Ga0184620_10224995	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	627	Open in IMG/M
3300018053\|Ga0184626_10069235	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1487	Open in IMG/M
3300018081\|Ga0184625_10565388	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	563	Open in IMG/M
3300018433\|Ga0066667_11921370	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	540	Open in IMG/M
3300019259\|Ga0184646_1604259	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	547	Open in IMG/M
3300019878\|Ga0193715_1028731	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1207	Open in IMG/M
3300019878\|Ga0193715_1103467	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	568	Open in IMG/M
3300019887\|Ga0193729_1101860	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1092	Open in IMG/M
3300019999\|Ga0193718_1028765	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1235	Open in IMG/M
3300020067\|Ga0180109_1289018	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	537	Open in IMG/M
3300021080\|Ga0210382_10289334	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	720	Open in IMG/M
3300022534\|Ga0224452_1079389	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	994	Open in IMG/M
3300022534\|Ga0224452_1169483	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	672	Open in IMG/M
3300025885\|Ga0207653_10292540	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	630	Open in IMG/M
3300025898\|Ga0207692_11156690	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	513	Open in IMG/M
3300025914\|Ga0207671_10368860	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1140	Open in IMG/M
3300025941\|Ga0207711_10776245	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	893	Open in IMG/M
3300025961\|Ga0207712_11279072	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	655	Open in IMG/M
3300025972\|Ga0207668_10361461	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1217	Open in IMG/M
3300025986\|Ga0207658_10152576	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	1884	Open in IMG/M
3300026035\|Ga0207703_10498536	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1143	Open in IMG/M
3300026088\|Ga0207641_10307004	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1500	Open in IMG/M
3300026089\|Ga0207648_12245470	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	506	Open in IMG/M
3300026527\|Ga0209059_1208915	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	658	Open in IMG/M
3300026528\|Ga0209378_1264655	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	546	Open in IMG/M
3300026538\|Ga0209056_10155824	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1741	Open in IMG/M
3300027178\|Ga0207606_101552	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	773	Open in IMG/M
3300027725\|Ga0209178_1087258	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1031	Open in IMG/M
3300027846\|Ga0209180_10478685	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	699	Open in IMG/M
3300027907\|Ga0207428_10429197	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	965	Open in IMG/M
3300028792\|Ga0307504_10138077	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	816	Open in IMG/M
3300028811\|Ga0307292_10132249	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	999	Open in IMG/M
3300028828\|Ga0307312_10060822	All Organisms → cellular organisms → Bacteria	2276	Open in IMG/M
3300031751\|Ga0318494_10211838	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1106	Open in IMG/M
3300031764\|Ga0318535_10482929	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	551	Open in IMG/M
3300031965\|Ga0326597_11422077	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	671	Open in IMG/M
3300032174\|Ga0307470_11698208	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	531	Open in IMG/M
3300032179\|Ga0310889_10187355	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	949	Open in IMG/M
3300033551\|Ga0247830_10098733	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2048	Open in IMG/M
3300034660\|Ga0314781_096276	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	590	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	78.22%
Host-Associated	Host-Associated	21.78%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	68.32%
Plants	Host-Associated → Plants	20.79%
Aquatic	Environmental → Aquatic	9.90%
Human	Host-Associated → Human	0.99%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	68.32%
Rhizosphere	Host-Associated → Plants → Rhizosphere	13.86%
Sediment	Environmental → Aquatic → Sediment	6.93%
Rhizoplane	Host-Associated → Plants → Rhizoplane	6.93%
Freshwater	Environmental → Aquatic → Freshwater	2.97%
Digestive System	Host-Associated → Human → Digestive System	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	54.46%
Loam	Environmental → Terrestrial → Soil → Loam	11.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	11.88%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	6.93%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	6.93%
Sediment	Environmental → Aquatic → Freshwater → Sediment	2.97%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.98%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.98%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	34.65%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	11.88%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	9.90%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	6.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	6.93%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.96%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	2.97%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.97%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.97%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.98%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.98%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.98%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.99%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	0.99%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	0.99%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	13.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	8.91%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	8.91%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	7.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	6.93%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.95%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.96%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	2.97%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.97%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.97%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.97%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.97%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.98%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.98%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.99%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.99%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.99%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.99%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	0.99%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	0.99%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.99%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.99%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002122	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_2	Environmental	Open in IMG/M
3300002908	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300002911	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm	Environmental	Open in IMG/M
3300003347	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Rhizosphere soil Co-N PM	Host-Associated	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300004803	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-2 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010303	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015	Environmental	Open in IMG/M
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental	Open in IMG/M
3300010320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_11112015	Environmental	Open in IMG/M
3300010322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_11112015	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300012040	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT746_2	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300014150	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300014308	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleC_D1	Environmental	Open in IMG/M
3300015358	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300017654	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300017659	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018051	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1	Environmental	Open in IMG/M
3300018053	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300019259	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019878	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2m2	Environmental	Open in IMG/M
3300019887	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2	Environmental	Open in IMG/M
3300019999	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a1	Environmental	Open in IMG/M
3300020067	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLIBT47_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021080	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo	Environmental	Open in IMG/M
3300022534	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1	Environmental	Open in IMG/M
3300025885	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026527	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151 (SPAdes)	Environmental	Open in IMG/M
3300026528	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156 (SPAdes)	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300027178	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05.2A5-11 (SPAdes)	Environmental	Open in IMG/M
3300027725	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028792	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_S	Environmental	Open in IMG/M
3300028811	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031965	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT100D185	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032179	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D2	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M
3300034660	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60R2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.39
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.39
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F102800

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
C687J26623_100011261	3300002122	Soil	MSKVLEASRAGALMAPAHRPIRVGRLRAFVERESAFSWLMLTP
JGI25382J43887_101343761	3300002908	Grasslands Soil	MGRVVEASRAPALEARDYRPLRFGRLREFVERESVFSWLILTPPLLFLLLFLGYPFFY
JGI25390J43892_100538982	3300002911	Grasslands Soil	LSKILEASRARALAAPAHRPIRFGRLGAFMERESVFSWLMLTPPVLFLVAFLGYP
JGI26128J50194_10127512	3300003347	Arabidopsis Thaliana Rhizosphere	MSRIFEASGAPTLEVGAHGPVGLGRLRAFVEREQVYSWLMLTPPVLFLLAFLGYPFFY
Ga0066395_104564092	3300004633	Tropical Forest Soil	MSKILEARASTLAARAPRSFALRGFLEREAVFSWLMMTPPVLFLVAFLGYPF
Ga0058862_127987731	3300004803	Host-Associated	LSEIFEVSRTGELAASVRRPLGRGGLRAFVERESVYSWLMLTPPLLFLLLFLG
Ga0066672_102348502	3300005167	Soil	MSKVLEAARAGALPAPARRPFRLAAFMERESVFSWLMLTPPLL
Ga0066673_105956351	3300005175	Soil	MSEVVEASRATALAAPARGSIRSGRLGALVQRESVFSWLMLTPPVLFL
Ga0066388_1049283151	3300005332	Tropical Forest Soil	MSPGIEASPAAALETTARRLFGLGRLTAFVEREAVFSALMLTPPLLFLLGFLG
Ga0070705_1002713971	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	LSKVLEASRAGAVMAPARRPFRLAAFVERESVFSWLMLTPPLLFLLA
Ga0070705_1004879382	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	LSKILEAPRAGALTAPAHRPIRFGRLGAFLERESVFSWLMLTPP
Ga0070708_1007786932	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	LSKILEASRAGALAAPARRPFGLAAFIERESIFSWLMLTPPVLF
Ga0068867_1003031732	3300005459	Miscanthus Rhizosphere	LSKILEAPRAGALTAPAHRPIRFGRLGAFLERESVFSWLMLTPPVLF
Ga0070698_1003502881	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	LSKILEAGRAGALEAAPARRPFRLAAFFDRESTFSWLMLTPPLLF
Ga0070699_1011425151	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	LSKILEASRAGALAAPARRPFRLAAFMERESVFSWLMLTPPLLFLLA
Ga0070697_1004589041	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	VSKILEASRAGALAAPARRPLGWGGLRAFVERESVFSWLMLTPPVLFLLAFLGYPF
Ga0066701_100672443	3300005552	Soil	MSKVLEAARAGALPAPARRPFRLAAFMERESVFSWLMLTPPMLFLLAF
Ga0066704_107028582	3300005557	Soil	LSKILEASRTGALVTPVRRPLGWGALRAFVERESVFSWLMLTP
Ga0068854_1017765592	3300005578	Corn Rhizosphere	VSTNPAVGTSGAAALGARAYRSVGVGQRLREFVEREWVFSWLILTPPLLFLLCFLGYPFFYGVYLSFFRRE
Ga0068866_114113671	3300005718	Miscanthus Rhizosphere	MSRVVGASPATALETPAPRLLGLGRLAAFVEREAVFSWLM
Ga0066656_106674261	3300006034	Soil	MSKVLEAARAGALPAPARRPFRLAAFMERESVFSWLMLTPPMLFLLAFL
Ga0075417_104175731	3300006049	Populus Rhizosphere	VSKILEASRTGGLAASVRRPLGLGALRTFVERESVF
Ga0079220_101512591	3300006806	Agricultural Soil	LSEIFEVSRTGELAASVRRPLGRGGLRAFVERESVYSWLMLTPPLLFLLLFL
Ga0075421_1023385681	3300006845	Populus Rhizosphere	LSEIFEVSRTGELAASVRRPLGRSGLRAFVERESVYSWLMLTPPLLFLLLFLGYPFIY
Ga0075424_1005363491	3300006904	Populus Rhizosphere	LSEIFEVSRTGELAASVRRPLGRGGLRAFVERESVYSWLMLTPPLL
Ga0075435_1012365312	3300007076	Populus Rhizosphere	MSEVAEASRTTALAGPANRSLRVGRLGALVQRESVFSWLMVT
Ga0099829_113573562	3300009038	Vadose Zone Soil	LSKILEASRTGALATPVRRPLGWGALRAFVERESVFSWLMLTPPLLFLLLFMC
Ga0099827_109050781	3300009090	Vadose Zone Soil	MSKILEASRAGALEAPARRPFQVGRLRAFFERESV
Ga0105245_113383761	3300009098	Miscanthus Rhizosphere	LSKILEASRAGPLAAPAHRPIGLGRLGAFVERESVFSWL
Ga0105243_117024602	3300009148	Miscanthus Rhizosphere	MGRAVEASRAPALEARDYRPLRFGRFREFVERESVFSWLILTPPILFLLLFLGYPFF
Ga0105241_108222392	3300009174	Corn Rhizosphere	MSKILEASRAGALAAPARRTLGLGRLHAFVERESV
Ga0126380_105883421	3300010043	Tropical Forest Soil	MGRAVEASRATALEARDYRPLRFGRLREFVERESVFSWLVLTPPLLFLLLFLGYPFFYG
Ga0134082_102597821	3300010303	Grasslands Soil	MSKVLEAARAGALPAPARRPFRLAAFMERESVFSWLM
Ga0134088_100317713	3300010304	Grasslands Soil	MGRVVEASRAPALEARDYRPLRFGRLREFVERESVFSWLILTPPLLFLLLFLG
Ga0134109_100862261	3300010320	Grasslands Soil	MNEVVEASRATALAAPAQGSFRLGRLGALVQRESVFSWLMLTPPVLF
Ga0134084_100740822	3300010322	Grasslands Soil	MSKVLEAARAGALAVPARRPFRLAAFMERESVFSWLMLTPP
Ga0134111_104636841	3300010329	Grasslands Soil	LSKILEASRARALAAPAHRPIRFGRLGAFMERESVFSWLMLTPPVLFLVAFLGYPF
Ga0126379_105002181	3300010366	Tropical Forest Soil	MSPVVEASRATALPSRAYRPVRMSRLREFVERESVFSWLILTPPVLFLLAFLGYPFF
Ga0105239_107946381	3300010375	Corn Rhizosphere	MSKILEASRAGALAAPARRTLGLGRLHAFVERESVFSWLMLTPPLLFLLAF
Ga0137461_10393642	3300012040	Soil	MSKVLEAPRAGALSAPAHRPIRVGRFRGLVERESVFSWLMLTPPLLFLLAFL
Ga0137389_100412671	3300012096	Vadose Zone Soil	LSKVLEASRAGALAAPARRPIRFGRFGAFMERESV
Ga0137389_114174941	3300012096	Vadose Zone Soil	LSKILEASRAGALAAPARRAYRLAAFFERESVFSWLMLTPPLLFLL
Ga0137381_114017592	3300012207	Vadose Zone Soil	LSKILEAGRAGALAAPVRRPFRLAAFFDRESTFSWLMLTP
Ga0137386_107409861	3300012351	Vadose Zone Soil	LSKILEASRAGALAAPAHRPFRRAAFFERESVFSWLMLTPPLLFLLAFLGYP
Ga0137385_105773491	3300012359	Vadose Zone Soil	MSKVLEAARAGALPAPARRPFRLAAFMERESVFSGLILTPPMLFLLSFLGYPFCYGVY
Ga0137375_102718001	3300012360	Vadose Zone Soil	LSKVLEASRAGALAAPARRPIRFGRFGAFMERESVFS
Ga0137360_108979911	3300012361	Vadose Zone Soil	LSKILEASRTGALAAPVRRPFRLAAFLESETVFSWLMLTPPLLFLLAF
Ga0137361_104637591	3300012362	Vadose Zone Soil	LVSKILEASRAGALAAPARRPLGWGRLRAFVERESVFSWLMLTPPLLFL
Ga0137358_105722931	3300012582	Vadose Zone Soil	LVSKILEASRAGALAAPARRPLGWGRLRAFVERESV
Ga0137404_118172311	3300012929	Vadose Zone Soil	MSKVLEASRAGALEAPARRPFRLAGFFERESVFSWLMLTPPLLFLLAFL
Ga0137407_1000830012	3300012930	Vadose Zone Soil	MSKVLEASRAGALMAPARRPFRLAGFFERESVFSWLMLTPPLLFLLAFLGYPFI
Ga0126369_127794732	3300012971	Tropical Forest Soil	MSRVIEASPAAALETPARRPFGLGRLAAFVEREAVFSALMLTP
Ga0164307_101457232	3300012987	Soil	LVSKILEASRAGALAAPARRPLGWGRLRAFVERESVFSWLMLTPPLLF
Ga0134081_103150112	3300014150	Grasslands Soil	MNEVVEASRATALAAPAQGSFRLGRLGALVQRESVFSWLMLTPPVLFLLAFLGY
Ga0075354_10039361	3300014308	Natural And Restored Wetlands	LSKILEAPRAGALMAPTHRPFRLAAFLAREPVFSSLMLTRTM
Ga0134089_105799742	3300015358	Grasslands Soil	VSTNPAVGASGAAALEARGYRSVGLSRLREFIERESVFSWLILTPPLLFLLAFLGYP
Ga0182033_102947302	3300016319	Soil	VSKILEARAPTLAARAARPFALRGLFDRESAFSWLMMTPPLLFLLAFLG
Ga0134069_10587121	3300017654	Grasslands Soil	LSKILEASLAGALAAPAHRPIRFGRLGAFMERESVF
Ga0134083_100831362	3300017659	Grasslands Soil	MSEVVEASRATALAAPARGSIRSGRLGALVQRESVFSWLMLTPPVLFLLAFLGY
Ga0187778_106853772	3300017961	Tropical Peatland	LSKILEAGRPGALAAPIRRPFGRAAFCERESIFSWLMLTP
Ga0184608_101940641	3300018028	Groundwater Sediment	VSKILEASRAGALAAPARRPFRLGAFVERESVFSWLMLTPPLLFLL
Ga0184620_102249951	3300018051	Groundwater Sediment	MSEILEASRAGALAAPARRPLGLGRLRAFVERESVFSWLMLTPP
Ga0184626_100692352	3300018053	Groundwater Sediment	MSKVLEASRAGARAAPAQRPFRLAAFVERESVFSWLM
Ga0184625_105653881	3300018081	Groundwater Sediment	MSRVIGASPATTLATPARRALGRGRLAAFVERESVFSWLMLTPPLLFLL
Ga0066667_119213702	3300018433	Grasslands Soil	MSPVVEASRAAALESRAYRPVAVRRLREFIERESVFSWLILTPPVLFLLAFLGYPFFY
Ga0184646_16042592	3300019259	Groundwater Sediment	MSKVLEASRAGARAAPARRPFRLAAFVERESVFSWLMLTPPLLFLLAFLGY
Ga0193715_10287311	3300019878	Soil	MSEILEASRAGALAAPARRPLGLGRLRAFVERESVFSWLMLTPPL
Ga0193715_11034672	3300019878	Soil	LSKILEASRAGALAAPARRPFRLAAFLERESVFSWLMLTPPVLFLL
Ga0193729_11018601	3300019887	Soil	VSKILEASRAGALAAPVRRPLGWGGLRAFVERESVFSWHML
Ga0193718_10287652	3300019999	Soil	LSKILEAPRAGALAAPAHRSVRFGRLGAFVERESVFSWLMLTP
Ga0180109_12890181	3300020067	Groundwater Sediment	LSKVLEASRAGALMAPARRPFRLGGFIERESVFSWLMLTPPVLFLLAFL
Ga0210382_102893341	3300021080	Groundwater Sediment	MSEILEASRAGALAAPARRPLGLGRLRAFVERESVFSWLMLT
Ga0224452_10793891	3300022534	Groundwater Sediment	MSKALEASREGALAAPSQRPFRLAAFVERESVFSWLMLTPPLLFL
Ga0224452_11694831	3300022534	Groundwater Sediment	LSKILEASRAGALAAPARRPFGLGGLRAFLERESVFSWLMLTPPLLFLLAFLGYPF
Ga0207653_102925402	3300025885	Corn, Switchgrass And Miscanthus Rhizosphere	VSKILEASRTGGLAAPVRRPLGWGALRAFVEREAVFSWLMLTPPLLFL
Ga0207692_111566902	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	VSKILEASRTGALAAPVRRPLGWGALRAFVERESVFSWLML
Ga0207671_103688602	3300025914	Corn Rhizosphere	LSEIFEVSRTSELAASVRRPLGRGGLRAFVERESVYSWL
Ga0207711_107762452	3300025941	Switchgrass Rhizosphere	MSKILEASRAGALAAPARRTLGLGRLHAFVERESVFSW
Ga0207712_112790721	3300025961	Switchgrass Rhizosphere	MSRVIGASPAAALETPARRALGLGRLAALVERESVFS
Ga0207668_103614612	3300025972	Switchgrass Rhizosphere	LSKILEASRAGALAAPARRPFGLAAFIERESIFSWLMLTPPVLFLLLFL
Ga0207658_101525761	3300025986	Switchgrass Rhizosphere	LSEIFEVSRTGELAASVRRPLGRGGLRAFVERESVYSWLMLT
Ga0207703_104985361	3300026035	Switchgrass Rhizosphere	LSKILEASRAGPLAAPAHRPIGLGRLGAFVERESVFSWLMLTPPLLFLLAF
Ga0207641_103070041	3300026088	Switchgrass Rhizosphere	LSEIFEVSRTGELAASVRRPLGRGGLRAFVERESVYSWLMLTPPLLFLLLFLGYPFIY
Ga0207648_122454702	3300026089	Miscanthus Rhizosphere	LSKILEAPRAGALTAPAHRPIRFGRLGAFLERESVFSWLMLTPPVLFLLAFLGYPF
Ga0209059_12089151	3300026527	Soil	MSKVLEAARAGALPAPARRPFRLAAFMERESVFSWLMLTPPMLFL
Ga0209378_12646551	3300026528	Soil	MSKVLEAARAGALAVPARRPFRLAAFMERESVFSWLML
Ga0209056_101558242	3300026538	Soil	MSPLVEASRAAALEARTYRPVRLGRLREFVEREQVFSWLILTPPVLFLLAFLGYPFLYG
Ga0207606_1015522	3300027178	Soil	LSEIFEVSRTGELAASVRRPLGRGGLRAFVERESVY
Ga0209178_10872582	3300027725	Agricultural Soil	LSEIFEVSRTGELAASVRRPLGRGGLRAFVERESVYSWLMLTPPLLFLLLFLGYPF
Ga0209180_104786851	3300027846	Vadose Zone Soil	MSKILEASRAGALEAPARRPFQFGRLRAFFERESVF
Ga0207428_104291972	3300027907	Populus Rhizosphere	VSTNPAVGTSGAAALEARAYRSVGLGRRLREFIEREWVFSWLILTPPLLFLLCFLGYPFF
Ga0307504_101380771	3300028792	Soil	LSKILEAGRAGALAAPARRPFRLAAFFERESVFSWLMLTPPLLFLLAFLG
Ga0307292_101322492	3300028811	Soil	MSEILEASRAGALAAPARRPLGLGRLRAFVERESVFSWLMLTPPLLFLLAFLGYPFF
Ga0307312_100608223	3300028828	Soil	MSEILEASRAGALAAPARRPLGLGRLRAFVERESVFSWLMLTPPLLFLLAFLGY
Ga0318494_102118382	3300031751	Soil	VSKILEARAPTLAAHAPRPLALRRLFDRESTFSWLMMTPPLLFLLAFLGYPF
Ga0318535_104829292	3300031764	Soil	VSKILEARAPTLAAHAPRPLALRRLFDRESTFSWLMMTPPLLFLLAFLG
Ga0326597_114220771	3300031965	Soil	MSKVLEASRAGALMAPAHRPIRVGRLRAFVERESVFSWLMLTPPLLFLLAFLGYPF
Ga0307470_116982082	3300032174	Hardwood Forest Soil	LSKILEAPRAGALTAPAHRPIRFGRLGALVERESVYSWLMITPPVLFLL
Ga0310889_101873552	3300032179	Soil	MGRVVEASRAPALEARAYRSVRSSRLREFVERESVFSWLILTPPILFLLLFLGYPFFYG
Ga0247830_100987331	3300033551	Soil	MSRVIGASPATALATPAPRPLGLGRLAAFVERESVFSWLMLTPPLLFLL
Ga0314781_096276_446_589	3300034660	Soil	MSEIFEVSRTGELAASVRRPLGRGGLRAFVERESVYSWLMLTPPLLFL

Hidden Markov Model


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