NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F102794

Metagenome / Metatranscriptome Family F102794

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F102794
Family Type Metagenome / Metatranscriptome
Number of Sequences 101
Average Sequence Length 40 residues
Representative Sequence NRSDVMTVAVVARTDPQEQESVVTLSLPPHLAELDDFPVASP
Number of Associated Samples 93
Number of Associated Scaffolds 101

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 95.05 %
% of genes from short scaffolds (< 2000 bps) 90.10 %
Associated GOLD sequencing projects 88
AlphaFold2 3D model prediction Yes
3D model pTM-score0.22

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (59.406 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(30.693 % of family members)
Environment Ontology (ENVO) Unclassified
(27.723 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(46.535 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.
1JGIcombinedJ51221_102830002
2Ga0070682_1019917702
3Ga0070711_1014035721
4Ga0070732_100158494
5Ga0066698_107410321
6Ga0066699_105699251
7Ga0070702_1001940791
8Ga0070766_100333951
9Ga0075432_106012282
10Ga0079220_108004482
11Ga0075435_1007216921
12Ga0116222_15197022
13Ga0116218_15479832
14Ga0116221_15293321
15Ga0126382_120376791
16Ga0126373_122497032
17Ga0127503_102469992
18Ga0074045_102727042
19Ga0136449_1018649463
20Ga0126361_101827042
21Ga0137376_111775181
22Ga0157372_117176602
23Ga0182024_128580311
24Ga0137409_108695352
25Ga0132255_1060007522
26Ga0182041_119383721
27Ga0187812_12372382
28Ga0187807_11131252
29Ga0187807_13087481
30Ga0187814_101534632
31Ga0187809_100531171
32Ga0187819_105215811
33Ga0187847_103582832
34Ga0187765_110398471
35Ga0187784_104040292
36Ga0187784_111333862
37Ga0187770_112669902
38Ga0210399_103383402
39Ga0210395_101472022
40Ga0210405_100737492
41Ga0210408_110390692
42Ga0210396_115274371
43Ga0213874_102290961
44Ga0210389_100341663
45Ga0210387_100734951
46Ga0210383_117868641
47Ga0210391_114410392
48Ga0213878_103229001
49Ga0210402_117269251
50Ga0242677_10100702
51Ga0208848_10479301
52Ga0207645_102355041
53Ga0207663_110859091
54Ga0207664_110104072
55Ga0207702_119585222
56Ga0208827_10174654
57Ga0208565_11982672
58Ga0209073_102463061
59Ga0209655_100547661
60Ga0209380_100475214
61Ga0302178_104763582
62Ga0302176_104668081
63Ga0302183_102545792
64Ga0310039_101857651
65Ga0302311_109319821
66Ga0302307_101748142
67Ga0318538_106866622
68Ga0318538_108348542
69Ga0310686_1049615631
70Ga0318496_101687281
71Ga0318526_102123871
72Ga0318526_102571061
73Ga0318547_108266941
74Ga0318523_102704801
75Ga0318565_101142281
76Ga0318568_106521891
77Ga0318499_101570341
78Ga0318511_103982292
79Ga0318495_100333002
80Ga0306923_100032211
81Ga0306923_125321451
82Ga0306921_113358393
83Ga0310909_101269011
84Ga0306926_109166511
85Ga0306926_110036702
86Ga0318556_101802302
87Ga0318510_101039532
88Ga0318514_103374082
89Ga0318553_100991672
90Ga0306924_106349702
91Ga0306924_112666841
92Ga0318525_104890082
93Ga0335085_115105752
94Ga0335085_123002121
95Ga0335078_109151961
96Ga0335069_105200243
97Ga0335075_116150492
98Ga0335083_113679552
99Ga0310914_107505241
100Ga0318519_108270111
101Ga0370483_0230730_506_619
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 11.43%    β-sheet: 0.00%    Coil/Unstructured: 88.57%
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Variant

510152025303540NRSDVMTVAVVARTDPQEQESVVTLSLPPHLAELDDFPVASPSequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.22
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
40.6%59.4%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Peatland
Bog Forest Soil
Freshwater Sediment
Soil
Soil
Vadose Zone Soil
Tropical Forest Soil
Bulk Soil
Surface Soil
Peatlands Soil
Agricultural Soil
Arctic Peat Soil
Soil
Soil
Soil
Soil
Untreated Peat Soil
Tropical Peatland
Bog Forest Soil
Permafrost
Forest Soil
Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Corn Rhizosphere
Agricultural Soil
Palsa
Arabidopsis Rhizosphere
Corn Rhizosphere
Plant Roots
Populus Rhizosphere
Corn Rhizosphere
Miscanthus Rhizosphere
Boreal Forest Soil
5.9%6.9%30.7%7.9%5.9%4.0%3.0%5.0%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGIcombinedJ51221_1028300023300003505Forest SoilPVNRSDVMTVAVVARTDPQEQESVVTMNLPPHLAELDAFPVASQ*
Ga0070682_10199177023300005337Corn RhizosphereLPVNRSDVMTVAVVARTDPQEQESVVTMSLPPHLAELHDFPVATP*
Ga0070711_10140357213300005439Corn, Switchgrass And Miscanthus RhizospherePVNRSDVMTVAVVARTDPQEQESVVPMSLPPHLSDLESFPVAAQ*
Ga0070732_1001584943300005542Surface SoilNRSDVMTIAVVARTDPQEQESVVTLSLPPHLAELNAFPIASP*
Ga0066698_1074103213300005558SoilPVNRSDVVTVAVVARTDPQEQESVVIMSLPPHLADLDDFPVASP*
Ga0066699_1056992513300005561SoilNRSDVMTIAVVARTDPEEQESVITLTLPPHLADLSAFPVAGH*
Ga0070702_10019407913300005615Corn, Switchgrass And Miscanthus RhizosphereNRSDVMTVAVVARTDPQEQESVVTMTLPPHLAELHDFPVATP*
Ga0070766_1003339513300005921SoilHLPVNRSDVMTVAVVARTDPQEQESVITLSLPPHLSDLDAFPVASQ*
Ga0075432_1060122823300006058Populus RhizospherePVNRSNVTTVAVVARTDPQEQESVVTMSLPPHLAELDDFPVATP*
Ga0079220_1080044823300006806Agricultural SoilVNRSDVMTVAVVARTDPQEQESVVTMSLPPHLAELDDLPVASP*
Ga0075435_10072169213300007076Populus RhizosphereNRSDVMTVAVVARTDPQEQESVVTLSLPPHLAELDDFPVAAP*
Ga0116222_151970223300009521Peatlands SoilMTIAVVARTDPQEQESVVTLTLPPHLAGLSAFPVAAG*
Ga0116218_154798323300009522Peatlands SoilTTVAVVARTDPREQESVVTLTLPPHLAGLSAFPVAAG*
Ga0116221_152933213300009523Peatlands SoilMTVAVVARTDPQEQESVVTMSLPPHLAELDAFPVASQ*
Ga0126382_1203767913300010047Tropical Forest SoilSYDGKQGTDPQEQESVVTMSLPPHLAELDDLPVATP*
Ga0126373_1224970323300010048Tropical Forest SoilLPVNRSEVTTVAVVARTDPREQESVVTLSLPPHLSDLDAFPVASP*
Ga0127503_1024699923300010154SoilVNRSEVTTVAVVARTDPREQESVVTLSRPPHLSDLDAFPVAAG*
Ga0074045_1027270423300010341Bog Forest SoilAVVARTDPQEQESVVTMNLPPHLAELDAFPVASQ*
Ga0136449_10186494633300010379Peatlands SoilVAVVARTDPAERESVVTLSLPQHLSELDAFPVASPASPA*
Ga0126361_1018270423300010876Boreal Forest SoilAVVARTDPQEQESVVTMTLPPHLADLNDFPVASQ*
Ga0137376_1117751813300012208Vadose Zone SoilVNRSEVTTVAVVARTDPREQESVVTLSLPPHLADLDAFPVAAG*
Ga0157372_1171766023300013307Corn RhizosphereVNRSDVMTVAVVARTDPQEQESVVTMSLPPHLAELHDFPVATP*
Ga0182024_1285803113300014501PermafrostLPVNRSDVMTVAVVARTDPQEQESVVAMTLPPHLSDLNAFPVASQ*
Ga0137409_1086953523300015245Vadose Zone SoilVAVVARTDPQEQESVVPMSLPPHLAELDDFPVASP*
Ga0132255_10600075223300015374Arabidopsis RhizosphereTVAVVARTDPQEQESVVTMSLPPHLAELDGFPVATP*
Ga0182041_1193837213300016294SoilPVNRSDVMTVAVVARTDPQEQESVVTVSLPPHLYELNDFPIASQ
Ga0187812_123723823300017821Freshwater SedimentVNRSDVMTVAVVARTDPQEQESVVTLSLPPHLSDLNAFPVASQ
Ga0187807_111312523300017926Freshwater SedimentTVAVVARTDPQEQESVVTLSLPPHLSDLNAFPVASQ
Ga0187807_130874813300017926Freshwater SedimentNRSDVMTVAVVARTDPQEQESVVTLSLPPHLSDLNAFPIASQ
Ga0187814_1015346323300017932Freshwater SedimentDVMTVAVVARTDPQEQESVVTLSLPPHLSDLNAFPVASQ
Ga0187809_1005311713300017937Freshwater SedimentRSDVMTVAVVARTDPQEQESVVTLSLPPHLSELNAFPVASQ
Ga0187819_1052158113300017943Freshwater SedimentVNRSDVMTVAVVARTDPQEQESVVTMSLPPHLAELDAFPVASQ
Ga0187847_1035828323300017948PeatlandVMTVAVVARTDPQEQESVVTMNLPAHLAELNAFPVASQ
Ga0187765_1103984713300018060Tropical PeatlandHLPVNRSNVMTVAVVARTDPEEQESVVTMKMPPHLAELDAFPVASQ
Ga0187784_1040402923300018062Tropical PeatlandLPVNRSDVMTVAVVARTDPQEQESVVTLSLPPHLSELNAFPVASP
Ga0187784_1113338623300018062Tropical PeatlandVAVVARTDPQEQESVVTLSLPPHLSDLNAFPVASP
Ga0187770_1126699023300018090Tropical PeatlandPVNRSDVTTVAVVARTDPREQESVVTLSLPPHLASLEAFPVAAG
Ga0210399_1033834023300020581SoilRSDVMTVAVVARTDPQEQESVVTLSLPPHLSDLDAFPVASQ
Ga0210395_1014720223300020582SoilDVMTVAVVARTDPQEQESVVALSLPPHLSDLDAFPVASQ
Ga0210405_1007374923300021171SoilVNRSEVTTVAVVARTDPREQESVVTLSLPPHLADLDAFPVAAG
Ga0210408_1103906923300021178SoilVAVVARTDPQEQESVVTMSLPPHLAELDDYPVASP
Ga0210396_1152743713300021180SoilTIAVVARTDPQEQESVVTLSLPPHLADLSAFPVATE
Ga0213874_1022909613300021377Plant RootsHLPVNRSDVMTVAVVARTDPQEQESVVTMNLPPHLAELDAFPVASQ
Ga0210389_1003416633300021404SoilVMTVAVVARTDPQEQESVITLSLPPHLSDLDGFPVASQ
Ga0210387_1007349513300021405SoilVAVVARTDPQEQESVVTLSLPPHLSDLDAFPVASQ
Ga0210383_1178686413300021407SoilTVAVVARTDPQEQESVVTLSLPPHLSDLDAFPVASQ
Ga0210391_1144103923300021433SoilLPVNRSDVMTVAVVARTDPQEQESVVTLSLPPHLSDLDAFPVASQ
Ga0213878_1032290013300021444Bulk SoilTVAVVARTDPQEQESVVTLSLPPHLSELDAFPVASQ
Ga0210402_1172692513300021478SoilNRSDVMTVAVVARTDPQEQESVVTLSLPPHLAELDDFPVASP
Ga0242677_101007023300022713SoilVNRSDVMTVAVVARTDPQEQESVVTMNLPPHLAELAAFPVASR
Ga0208848_104793013300025509Arctic Peat SoilVAVVARTDPQEQESVVTLSLPPHLAELDDYPVASQ
Ga0207645_1023550413300025907Miscanthus RhizosphereTVAVVARTDPQEQESVVTLSLPPHLAELDDFPVASP
Ga0207663_1108590913300025916Corn, Switchgrass And Miscanthus RhizosphereVLTVAVVARTDPQEQESVVPVSLPAHLADLDAFPVASQ
Ga0207664_1101040723300025929Agricultural SoilPVNRSDVLTVAVVARTDAQEQESVVPLSLPPHLADLDEVPLASQ
Ga0207702_1195852223300026078Corn RhizosphereTVAVVARTDPQEQESVVTMSLPPHLAELHDFPVATP
Ga0208827_101746543300027641Peatlands SoilTIAVVARTDPQEQESVVTLSLPPHLSDLNAFPVASQ
Ga0208565_119826723300027662Peatlands SoilPVNRSDVMTVAVVARTDPQEQESVVTMTLPPHLAELDAFPVASQ
Ga0209073_1024630613300027765Agricultural SoilTVAVVARTDPQEQESVVTMSLPPHLAELDDLPVASP
Ga0209655_1005476613300027767Bog Forest SoilSDVMTVAVVARTDPQEQESVVTLSLPPHLSDLDAFPVASQ
Ga0209380_1004752143300027889SoilLPVNRSDVMTVAVVARTDPQEQESVITLSLPPHLSDLDAFPVASQ
Ga0302178_1047635823300030013PalsaMTVAVVARTDPQEQESVVPMSLPPHLSDLDAFPVAAQ
Ga0302176_1046680813300030057PalsaRSDVTTVAVVARTDPQEQESVVTISLPPHLSDLDAFPVASQ
Ga0302183_1025457923300030509PalsaNRSDVTTVAVVARTDPQEQESVVTMNLPPHLADLNAFPVASR
Ga0310039_1018576513300030706Peatlands SoilPVNRSDVMTVAIVARTDPQEQESVVTLSLPPHLSDLNAFPVASQ
Ga0302311_1093198213300030739PalsaDVMTVAVVARTDPQEQESVVTMNLPPHLAELNAFPVASQ
Ga0302307_1017481423300031233PalsaTTVAVVARTDPQEQESVVTMNLPPHLAELNAFPVASQ
Ga0318538_1068666223300031546SoilTTTVAVVARTDPREQESVVTLSLPPHLAGLDAFPVAAG
Ga0318538_1083485423300031546SoilVMTVAVVARTDPQEQESVVTMSLPPHLAELDDFPVATP
Ga0310686_10496156313300031708SoilNRSDVMTVAVVARTDPQEQESVVTMKLPPHLAELDAFPIASG
Ga0318496_1016872813300031713SoilAVVARTDPHEQESVATLSLPPHLAELNAFPVASPGTPT
Ga0318526_1021238713300031769SoilNRSDVTTVAVVARTDPQEQESVVTLSLPPHLADLDAFPVASQ
Ga0318526_1025710613300031769SoilMTVAVVARTDPQEQESVVTMSLPPHLAELDDFPVATP
Ga0318547_1082669413300031781SoilVMAVAVVAGTDPHEQESVVTLSLPPHLAELNAFPVASPGTPT
Ga0318523_1027048013300031798SoilTVAVVARTDPQEQESVVTVSLPPHLYELNDFPIASQ
Ga0318565_1011422813300031799SoilDVVTVAVVARTDPQEQESVVTMSLPPHLAELDDFPVATP
Ga0318568_1065218913300031819SoilLTAVAVVARTDPHEQESVATLSLPPHLAELNAFPVASPGTPT
Ga0318499_1015703413300031832SoilNRSDVMAVAVVAGTDPHEQESVVTLSLPPHLAELNAFPVASPGTPT
Ga0318511_1039822923300031845SoilRSDVMTVAVVARTDPQEQESVVTMSLPPHLADLDDFPVASP
Ga0318495_1003330023300031860SoilTVAVVARTDPQEQESVVTMSLPPHLADLDDFPVASP
Ga0306923_1000322113300031910SoilTTVAVVARTDPREQESVVTLSLPAHLAGLDAFPVAAG
Ga0306923_1253214513300031910SoilVAVVARTDPREQESVVTLSLPPHLADLEAFPVAAG
Ga0306921_1133583933300031912SoilSDVTTVAVVARTDPREQESVVTLRLPPHLADLDAFPVAAG
Ga0310909_1012690113300031947SoilVTTVAVVARTDPREQESVVTLSLPPHLADLDAFPVAAG
Ga0306926_1091665113300031954SoilLPVNRSDVTAAAVVDSTDPHEQESVVTLSLPPHLAELNAFPIASPGTPT
Ga0306926_1100367023300031954SoilLPVNRSDVMTVAVVARTDPQEQESVVTLSLPPHLADLDAFPVASQ
Ga0318556_1018023023300032043SoilSDVMAVAVVARTDPHEQESVVTLSLPPHLAELNAFPVASPGTPT
Ga0318510_1010395323300032064SoilRSDVMTVAVVARTDPQEQESVVTVSLPPHLYELNDFPIASQ
Ga0318514_1033740823300032066SoilTVAVVARTDPREQESVVTLSLPAHLAGLDAFPVAAG
Ga0318553_1009916723300032068SoilARTDPHEQESVATLSLPPHLAELNAFPVASPGTPT
Ga0306924_1063497023300032076SoilVARTDPHEQESVVTLSLPPHLAELNAFPVASPGTPT
Ga0306924_1126668413300032076SoilNRGDLTAVAVVARTDPHEQESVATLSLPPHLAELNAFPVASPGTPT
Ga0318525_1048900823300032089SoilVNRSDVMAVAVVAGTDPHEQESVVTLSLPPHLAELNAFPVASPGTPT
Ga0335085_1151057523300032770SoilHLPVNRSDVMTVAVVARTDPQEQESVVTVSLPPHLAELDDFPVAAQ
Ga0335085_1230021213300032770SoilHLPVNRSDVMTVAVVARTDPQEQESVVTMSLPPHLAELDDFPVATP
Ga0335078_1091519613300032805SoilPVNRSDVMTVAVVARTDPQEQESVVTMSLPPHLAELDDFPVASP
Ga0335069_1052002433300032893SoilGIPHLPVNRSDVLTVAVVARTDAQEQESVVPLSLPPHLADLDEVPLASQ
Ga0335075_1161504923300032896SoilLPVNRSDVMTVAVVARTDPQEQESVVTISLPPHLAELNAFPIASPDTPA
Ga0335083_1136795523300032954SoilPVNRSDVMTVAVVARTDPQEQESVVTMKLPPHLAELDAFPVASH
Ga0310914_1075052413300033289SoilNRSDVMTIAVVARTDPQEQESVVTLSLPPHLADLDAFPVASP
Ga0318519_1082701113300033290SoilVARTDPHEQESVATLSLPPHLAELNAFPVASPGTPT
Ga0370483_0230730_506_6193300034124Untreated Peat SoilMTVAVVARTDPQEQESVVTMSLPPHLAELNAFPVASQ


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