Basic Information | |
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Family ID | F102794 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 101 |
Average Sequence Length | 40 residues |
Representative Sequence | NRSDVMTVAVVARTDPQEQESVVTLSLPPHLAELDDFPVASP |
Number of Associated Samples | 93 |
Number of Associated Scaffolds | 101 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 0.00 % |
% of genes near scaffold ends (potentially truncated) | 95.05 % |
% of genes from short scaffolds (< 2000 bps) | 90.10 % |
Associated GOLD sequencing projects | 88 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.22 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (59.406 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (30.693 % of family members) |
Environment Ontology (ENVO) | Unclassified (27.723 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (46.535 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 11.43% β-sheet: 0.00% Coil/Unstructured: 88.57% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.22 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Peatland Bog Forest Soil Freshwater Sediment Soil Soil Vadose Zone Soil Tropical Forest Soil Bulk Soil Surface Soil Peatlands Soil Agricultural Soil Arctic Peat Soil Soil Soil Soil Soil Untreated Peat Soil Tropical Peatland Bog Forest Soil Permafrost Forest Soil Soil Corn, Switchgrass And Miscanthus Rhizosphere Corn Rhizosphere Agricultural Soil Palsa Arabidopsis Rhizosphere Corn Rhizosphere Plant Roots Populus Rhizosphere Corn Rhizosphere Miscanthus Rhizosphere Boreal Forest Soil |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
JGIcombinedJ51221_102830002 | 3300003505 | Forest Soil | PVNRSDVMTVAVVARTDPQEQESVVTMNLPPHLAELDAFPVASQ* |
Ga0070682_1019917702 | 3300005337 | Corn Rhizosphere | LPVNRSDVMTVAVVARTDPQEQESVVTMSLPPHLAELHDFPVATP* |
Ga0070711_1014035721 | 3300005439 | Corn, Switchgrass And Miscanthus Rhizosphere | PVNRSDVMTVAVVARTDPQEQESVVPMSLPPHLSDLESFPVAAQ* |
Ga0070732_100158494 | 3300005542 | Surface Soil | NRSDVMTIAVVARTDPQEQESVVTLSLPPHLAELNAFPIASP* |
Ga0066698_107410321 | 3300005558 | Soil | PVNRSDVVTVAVVARTDPQEQESVVIMSLPPHLADLDDFPVASP* |
Ga0066699_105699251 | 3300005561 | Soil | NRSDVMTIAVVARTDPEEQESVITLTLPPHLADLSAFPVAGH* |
Ga0070702_1001940791 | 3300005615 | Corn, Switchgrass And Miscanthus Rhizosphere | NRSDVMTVAVVARTDPQEQESVVTMTLPPHLAELHDFPVATP* |
Ga0070766_100333951 | 3300005921 | Soil | HLPVNRSDVMTVAVVARTDPQEQESVITLSLPPHLSDLDAFPVASQ* |
Ga0075432_106012282 | 3300006058 | Populus Rhizosphere | PVNRSNVTTVAVVARTDPQEQESVVTMSLPPHLAELDDFPVATP* |
Ga0079220_108004482 | 3300006806 | Agricultural Soil | VNRSDVMTVAVVARTDPQEQESVVTMSLPPHLAELDDLPVASP* |
Ga0075435_1007216921 | 3300007076 | Populus Rhizosphere | NRSDVMTVAVVARTDPQEQESVVTLSLPPHLAELDDFPVAAP* |
Ga0116222_15197022 | 3300009521 | Peatlands Soil | MTIAVVARTDPQEQESVVTLTLPPHLAGLSAFPVAAG* |
Ga0116218_15479832 | 3300009522 | Peatlands Soil | TTVAVVARTDPREQESVVTLTLPPHLAGLSAFPVAAG* |
Ga0116221_15293321 | 3300009523 | Peatlands Soil | MTVAVVARTDPQEQESVVTMSLPPHLAELDAFPVASQ* |
Ga0126382_120376791 | 3300010047 | Tropical Forest Soil | SYDGKQGTDPQEQESVVTMSLPPHLAELDDLPVATP* |
Ga0126373_122497032 | 3300010048 | Tropical Forest Soil | LPVNRSEVTTVAVVARTDPREQESVVTLSLPPHLSDLDAFPVASP* |
Ga0127503_102469992 | 3300010154 | Soil | VNRSEVTTVAVVARTDPREQESVVTLSRPPHLSDLDAFPVAAG* |
Ga0074045_102727042 | 3300010341 | Bog Forest Soil | AVVARTDPQEQESVVTMNLPPHLAELDAFPVASQ* |
Ga0136449_1018649463 | 3300010379 | Peatlands Soil | VAVVARTDPAERESVVTLSLPQHLSELDAFPVASPASPA* |
Ga0126361_101827042 | 3300010876 | Boreal Forest Soil | AVVARTDPQEQESVVTMTLPPHLADLNDFPVASQ* |
Ga0137376_111775181 | 3300012208 | Vadose Zone Soil | VNRSEVTTVAVVARTDPREQESVVTLSLPPHLADLDAFPVAAG* |
Ga0157372_117176602 | 3300013307 | Corn Rhizosphere | VNRSDVMTVAVVARTDPQEQESVVTMSLPPHLAELHDFPVATP* |
Ga0182024_128580311 | 3300014501 | Permafrost | LPVNRSDVMTVAVVARTDPQEQESVVAMTLPPHLSDLNAFPVASQ* |
Ga0137409_108695352 | 3300015245 | Vadose Zone Soil | VAVVARTDPQEQESVVPMSLPPHLAELDDFPVASP* |
Ga0132255_1060007522 | 3300015374 | Arabidopsis Rhizosphere | TVAVVARTDPQEQESVVTMSLPPHLAELDGFPVATP* |
Ga0182041_119383721 | 3300016294 | Soil | PVNRSDVMTVAVVARTDPQEQESVVTVSLPPHLYELNDFPIASQ |
Ga0187812_12372382 | 3300017821 | Freshwater Sediment | VNRSDVMTVAVVARTDPQEQESVVTLSLPPHLSDLNAFPVASQ |
Ga0187807_11131252 | 3300017926 | Freshwater Sediment | TVAVVARTDPQEQESVVTLSLPPHLSDLNAFPVASQ |
Ga0187807_13087481 | 3300017926 | Freshwater Sediment | NRSDVMTVAVVARTDPQEQESVVTLSLPPHLSDLNAFPIASQ |
Ga0187814_101534632 | 3300017932 | Freshwater Sediment | DVMTVAVVARTDPQEQESVVTLSLPPHLSDLNAFPVASQ |
Ga0187809_100531171 | 3300017937 | Freshwater Sediment | RSDVMTVAVVARTDPQEQESVVTLSLPPHLSELNAFPVASQ |
Ga0187819_105215811 | 3300017943 | Freshwater Sediment | VNRSDVMTVAVVARTDPQEQESVVTMSLPPHLAELDAFPVASQ |
Ga0187847_103582832 | 3300017948 | Peatland | VMTVAVVARTDPQEQESVVTMNLPAHLAELNAFPVASQ |
Ga0187765_110398471 | 3300018060 | Tropical Peatland | HLPVNRSNVMTVAVVARTDPEEQESVVTMKMPPHLAELDAFPVASQ |
Ga0187784_104040292 | 3300018062 | Tropical Peatland | LPVNRSDVMTVAVVARTDPQEQESVVTLSLPPHLSELNAFPVASP |
Ga0187784_111333862 | 3300018062 | Tropical Peatland | VAVVARTDPQEQESVVTLSLPPHLSDLNAFPVASP |
Ga0187770_112669902 | 3300018090 | Tropical Peatland | PVNRSDVTTVAVVARTDPREQESVVTLSLPPHLASLEAFPVAAG |
Ga0210399_103383402 | 3300020581 | Soil | RSDVMTVAVVARTDPQEQESVVTLSLPPHLSDLDAFPVASQ |
Ga0210395_101472022 | 3300020582 | Soil | DVMTVAVVARTDPQEQESVVALSLPPHLSDLDAFPVASQ |
Ga0210405_100737492 | 3300021171 | Soil | VNRSEVTTVAVVARTDPREQESVVTLSLPPHLADLDAFPVAAG |
Ga0210408_110390692 | 3300021178 | Soil | VAVVARTDPQEQESVVTMSLPPHLAELDDYPVASP |
Ga0210396_115274371 | 3300021180 | Soil | TIAVVARTDPQEQESVVTLSLPPHLADLSAFPVATE |
Ga0213874_102290961 | 3300021377 | Plant Roots | HLPVNRSDVMTVAVVARTDPQEQESVVTMNLPPHLAELDAFPVASQ |
Ga0210389_100341663 | 3300021404 | Soil | VMTVAVVARTDPQEQESVITLSLPPHLSDLDGFPVASQ |
Ga0210387_100734951 | 3300021405 | Soil | VAVVARTDPQEQESVVTLSLPPHLSDLDAFPVASQ |
Ga0210383_117868641 | 3300021407 | Soil | TVAVVARTDPQEQESVVTLSLPPHLSDLDAFPVASQ |
Ga0210391_114410392 | 3300021433 | Soil | LPVNRSDVMTVAVVARTDPQEQESVVTLSLPPHLSDLDAFPVASQ |
Ga0213878_103229001 | 3300021444 | Bulk Soil | TVAVVARTDPQEQESVVTLSLPPHLSELDAFPVASQ |
Ga0210402_117269251 | 3300021478 | Soil | NRSDVMTVAVVARTDPQEQESVVTLSLPPHLAELDDFPVASP |
Ga0242677_10100702 | 3300022713 | Soil | VNRSDVMTVAVVARTDPQEQESVVTMNLPPHLAELAAFPVASR |
Ga0208848_10479301 | 3300025509 | Arctic Peat Soil | VAVVARTDPQEQESVVTLSLPPHLAELDDYPVASQ |
Ga0207645_102355041 | 3300025907 | Miscanthus Rhizosphere | TVAVVARTDPQEQESVVTLSLPPHLAELDDFPVASP |
Ga0207663_110859091 | 3300025916 | Corn, Switchgrass And Miscanthus Rhizosphere | VLTVAVVARTDPQEQESVVPVSLPAHLADLDAFPVASQ |
Ga0207664_110104072 | 3300025929 | Agricultural Soil | PVNRSDVLTVAVVARTDAQEQESVVPLSLPPHLADLDEVPLASQ |
Ga0207702_119585222 | 3300026078 | Corn Rhizosphere | TVAVVARTDPQEQESVVTMSLPPHLAELHDFPVATP |
Ga0208827_10174654 | 3300027641 | Peatlands Soil | TIAVVARTDPQEQESVVTLSLPPHLSDLNAFPVASQ |
Ga0208565_11982672 | 3300027662 | Peatlands Soil | PVNRSDVMTVAVVARTDPQEQESVVTMTLPPHLAELDAFPVASQ |
Ga0209073_102463061 | 3300027765 | Agricultural Soil | TVAVVARTDPQEQESVVTMSLPPHLAELDDLPVASP |
Ga0209655_100547661 | 3300027767 | Bog Forest Soil | SDVMTVAVVARTDPQEQESVVTLSLPPHLSDLDAFPVASQ |
Ga0209380_100475214 | 3300027889 | Soil | LPVNRSDVMTVAVVARTDPQEQESVITLSLPPHLSDLDAFPVASQ |
Ga0302178_104763582 | 3300030013 | Palsa | MTVAVVARTDPQEQESVVPMSLPPHLSDLDAFPVAAQ |
Ga0302176_104668081 | 3300030057 | Palsa | RSDVTTVAVVARTDPQEQESVVTISLPPHLSDLDAFPVASQ |
Ga0302183_102545792 | 3300030509 | Palsa | NRSDVTTVAVVARTDPQEQESVVTMNLPPHLADLNAFPVASR |
Ga0310039_101857651 | 3300030706 | Peatlands Soil | PVNRSDVMTVAIVARTDPQEQESVVTLSLPPHLSDLNAFPVASQ |
Ga0302311_109319821 | 3300030739 | Palsa | DVMTVAVVARTDPQEQESVVTMNLPPHLAELNAFPVASQ |
Ga0302307_101748142 | 3300031233 | Palsa | TTVAVVARTDPQEQESVVTMNLPPHLAELNAFPVASQ |
Ga0318538_106866622 | 3300031546 | Soil | TTTVAVVARTDPREQESVVTLSLPPHLAGLDAFPVAAG |
Ga0318538_108348542 | 3300031546 | Soil | VMTVAVVARTDPQEQESVVTMSLPPHLAELDDFPVATP |
Ga0310686_1049615631 | 3300031708 | Soil | NRSDVMTVAVVARTDPQEQESVVTMKLPPHLAELDAFPIASG |
Ga0318496_101687281 | 3300031713 | Soil | AVVARTDPHEQESVATLSLPPHLAELNAFPVASPGTPT |
Ga0318526_102123871 | 3300031769 | Soil | NRSDVTTVAVVARTDPQEQESVVTLSLPPHLADLDAFPVASQ |
Ga0318526_102571061 | 3300031769 | Soil | MTVAVVARTDPQEQESVVTMSLPPHLAELDDFPVATP |
Ga0318547_108266941 | 3300031781 | Soil | VMAVAVVAGTDPHEQESVVTLSLPPHLAELNAFPVASPGTPT |
Ga0318523_102704801 | 3300031798 | Soil | TVAVVARTDPQEQESVVTVSLPPHLYELNDFPIASQ |
Ga0318565_101142281 | 3300031799 | Soil | DVVTVAVVARTDPQEQESVVTMSLPPHLAELDDFPVATP |
Ga0318568_106521891 | 3300031819 | Soil | LTAVAVVARTDPHEQESVATLSLPPHLAELNAFPVASPGTPT |
Ga0318499_101570341 | 3300031832 | Soil | NRSDVMAVAVVAGTDPHEQESVVTLSLPPHLAELNAFPVASPGTPT |
Ga0318511_103982292 | 3300031845 | Soil | RSDVMTVAVVARTDPQEQESVVTMSLPPHLADLDDFPVASP |
Ga0318495_100333002 | 3300031860 | Soil | TVAVVARTDPQEQESVVTMSLPPHLADLDDFPVASP |
Ga0306923_100032211 | 3300031910 | Soil | TTVAVVARTDPREQESVVTLSLPAHLAGLDAFPVAAG |
Ga0306923_125321451 | 3300031910 | Soil | VAVVARTDPREQESVVTLSLPPHLADLEAFPVAAG |
Ga0306921_113358393 | 3300031912 | Soil | SDVTTVAVVARTDPREQESVVTLRLPPHLADLDAFPVAAG |
Ga0310909_101269011 | 3300031947 | Soil | VTTVAVVARTDPREQESVVTLSLPPHLADLDAFPVAAG |
Ga0306926_109166511 | 3300031954 | Soil | LPVNRSDVTAAAVVDSTDPHEQESVVTLSLPPHLAELNAFPIASPGTPT |
Ga0306926_110036702 | 3300031954 | Soil | LPVNRSDVMTVAVVARTDPQEQESVVTLSLPPHLADLDAFPVASQ |
Ga0318556_101802302 | 3300032043 | Soil | SDVMAVAVVARTDPHEQESVVTLSLPPHLAELNAFPVASPGTPT |
Ga0318510_101039532 | 3300032064 | Soil | RSDVMTVAVVARTDPQEQESVVTVSLPPHLYELNDFPIASQ |
Ga0318514_103374082 | 3300032066 | Soil | TVAVVARTDPREQESVVTLSLPAHLAGLDAFPVAAG |
Ga0318553_100991672 | 3300032068 | Soil | ARTDPHEQESVATLSLPPHLAELNAFPVASPGTPT |
Ga0306924_106349702 | 3300032076 | Soil | VARTDPHEQESVVTLSLPPHLAELNAFPVASPGTPT |
Ga0306924_112666841 | 3300032076 | Soil | NRGDLTAVAVVARTDPHEQESVATLSLPPHLAELNAFPVASPGTPT |
Ga0318525_104890082 | 3300032089 | Soil | VNRSDVMAVAVVAGTDPHEQESVVTLSLPPHLAELNAFPVASPGTPT |
Ga0335085_115105752 | 3300032770 | Soil | HLPVNRSDVMTVAVVARTDPQEQESVVTVSLPPHLAELDDFPVAAQ |
Ga0335085_123002121 | 3300032770 | Soil | HLPVNRSDVMTVAVVARTDPQEQESVVTMSLPPHLAELDDFPVATP |
Ga0335078_109151961 | 3300032805 | Soil | PVNRSDVMTVAVVARTDPQEQESVVTMSLPPHLAELDDFPVASP |
Ga0335069_105200243 | 3300032893 | Soil | GIPHLPVNRSDVLTVAVVARTDAQEQESVVPLSLPPHLADLDEVPLASQ |
Ga0335075_116150492 | 3300032896 | Soil | LPVNRSDVMTVAVVARTDPQEQESVVTISLPPHLAELNAFPIASPDTPA |
Ga0335083_113679552 | 3300032954 | Soil | PVNRSDVMTVAVVARTDPQEQESVVTMKLPPHLAELDAFPVASH |
Ga0310914_107505241 | 3300033289 | Soil | NRSDVMTIAVVARTDPQEQESVVTLSLPPHLADLDAFPVASP |
Ga0318519_108270111 | 3300033290 | Soil | VARTDPHEQESVATLSLPPHLAELNAFPVASPGTPT |
Ga0370483_0230730_506_619 | 3300034124 | Untreated Peat Soil | MTVAVVARTDPQEQESVVTMSLPPHLAELNAFPVASQ |
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