NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F102787

Metagenome / Metatranscriptome Family F102787

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F102787
Family Type Metagenome / Metatranscriptome
Number of Sequences 101
Average Sequence Length 43 residues
Representative Sequence MRKHHNKLYYGKYRYKTVFKMPGSLMFYPTTDQYLTNLKEK
Number of Associated Samples 88
Number of Associated Scaffolds 101

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 30.69 %
% of genes near scaffold ends (potentially truncated) 100.00 %
% of genes from short scaffolds (< 2000 bps) 91.09 %
Associated GOLD sequencing projects 79
AlphaFold2 3D model prediction Yes
3D model pTM-score0.22

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (74.257 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine
(22.772 % of family members)
Environment Ontology (ENVO) Unclassified
(75.248 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(87.129 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 20.29%    β-sheet: 0.00%    Coil/Unstructured: 79.71%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.22
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 101 Family Scaffolds
PF10431ClpB_D2-small 98.02
PF01327Pep_deformylase 1.98

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 101 Family Scaffolds
COG0242Peptide deformylaseTranslation, ribosomal structure and biogenesis [J] 1.98

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms100.00 %
UnclassifiedrootN/A0.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000265|LP_A_09_P04_10DRAFT_1048096All Organisms → cellular organisms → Bacteria644Open in IMG/M
3300001344|JGI20152J14361_10069596All Organisms → cellular organisms → Bacteria810Open in IMG/M
3300001353|JGI20159J14440_10086549All Organisms → Viruses → Predicted Viral1029Open in IMG/M
3300002242|KVWGV2_10976969All Organisms → cellular organisms → Bacteria522Open in IMG/M
3300006026|Ga0075478_10066596All Organisms → Viruses → Predicted Viral1168Open in IMG/M
3300006027|Ga0075462_10062371All Organisms → Viruses → Predicted Viral1177Open in IMG/M
3300006810|Ga0070754_10235733All Organisms → cellular organisms → Bacteria840Open in IMG/M
3300006916|Ga0070750_10481759All Organisms → cellular organisms → Bacteria510Open in IMG/M
3300007234|Ga0075460_10238815All Organisms → cellular organisms → Bacteria609Open in IMG/M
3300009409|Ga0114993_10908817All Organisms → cellular organisms → Bacteria630Open in IMG/M
3300009409|Ga0114993_11040396All Organisms → cellular organisms → Bacteria581Open in IMG/M
3300009428|Ga0114915_1047723All Organisms → Viruses → Predicted Viral1392Open in IMG/M
3300009440|Ga0115561_1342798All Organisms → cellular organisms → Bacteria549Open in IMG/M
3300009443|Ga0115557_1273145All Organisms → cellular organisms → Bacteria642Open in IMG/M
3300009449|Ga0115558_1275323All Organisms → cellular organisms → Bacteria675Open in IMG/M
3300009472|Ga0115554_1380688All Organisms → cellular organisms → Bacteria553Open in IMG/M
3300009476|Ga0115555_1458350All Organisms → cellular organisms → Bacteria505Open in IMG/M
3300009495|Ga0115571_1026079All Organisms → Viruses → Predicted Viral2916Open in IMG/M
3300009495|Ga0115571_1445590All Organisms → cellular organisms → Bacteria500Open in IMG/M
3300009497|Ga0115569_10484476All Organisms → cellular organisms → Bacteria524Open in IMG/M
3300009507|Ga0115572_10767386All Organisms → cellular organisms → Bacteria520Open in IMG/M
3300009508|Ga0115567_10146719All Organisms → Viruses → Predicted Viral1573Open in IMG/M
3300009705|Ga0115000_10504356All Organisms → cellular organisms → Bacteria761Open in IMG/M
3300009706|Ga0115002_10496293All Organisms → cellular organisms → Bacteria888Open in IMG/M
3300009706|Ga0115002_10505331All Organisms → cellular organisms → Bacteria878Open in IMG/M
3300009786|Ga0114999_10343552All Organisms → Viruses → Predicted Viral1189Open in IMG/M
3300010883|Ga0133547_10392786All Organisms → Viruses → Predicted Viral2839Open in IMG/M
3300012954|Ga0163111_11660497All Organisms → cellular organisms → Bacteria636Open in IMG/M
3300014959|Ga0134299_1062271All Organisms → cellular organisms → Bacteria526Open in IMG/M
3300016747|Ga0182078_10542990All Organisms → Viruses → Predicted Viral1549Open in IMG/M
3300017697|Ga0180120_10041694All Organisms → Viruses → Predicted Viral2090Open in IMG/M
3300017697|Ga0180120_10425770All Organisms → cellular organisms → Bacteria519Open in IMG/M
3300017727|Ga0181401_1148319All Organisms → cellular organisms → Bacteria573Open in IMG/M
3300017730|Ga0181417_1111434All Organisms → cellular organisms → Bacteria662Open in IMG/M
3300017752|Ga0181400_1226054All Organisms → cellular organisms → Bacteria510Open in IMG/M
3300017753|Ga0181407_1052281All Organisms → cellular organisms → Bacteria1067Open in IMG/M
3300017763|Ga0181410_1051641All Organisms → cellular organisms → Bacteria1261Open in IMG/M
3300017763|Ga0181410_1105944All Organisms → cellular organisms → Bacteria812Open in IMG/M
3300017770|Ga0187217_1312208All Organisms → cellular organisms → Bacteria505Open in IMG/M
3300017782|Ga0181380_1265652All Organisms → cellular organisms → Bacteria567Open in IMG/M
3300017818|Ga0181565_10182718All Organisms → Viruses → Predicted Viral1450Open in IMG/M
3300017818|Ga0181565_10370920All Organisms → cellular organisms → Bacteria949Open in IMG/M
3300017985|Ga0181576_10488469All Organisms → cellular organisms → Bacteria758Open in IMG/M
3300017986|Ga0181569_10612933All Organisms → cellular organisms → Bacteria727Open in IMG/M
3300018416|Ga0181553_10411837All Organisms → cellular organisms → Bacteria733Open in IMG/M
3300018420|Ga0181563_10579202All Organisms → cellular organisms → Bacteria625Open in IMG/M
3300018426|Ga0181566_10413283All Organisms → cellular organisms → Bacteria958Open in IMG/M
3300018876|Ga0181564_10498691All Organisms → cellular organisms → Bacteria653Open in IMG/M
3300020166|Ga0206128_1248843All Organisms → cellular organisms → Bacteria655Open in IMG/M
3300020276|Ga0211509_1077477All Organisms → cellular organisms → Bacteria765Open in IMG/M
3300020377|Ga0211647_10117426All Organisms → cellular organisms → Bacteria901Open in IMG/M
3300020379|Ga0211652_10045078All Organisms → cellular organisms → Bacteria1322Open in IMG/M
3300020379|Ga0211652_10244647All Organisms → cellular organisms → Bacteria550Open in IMG/M
3300020381|Ga0211476_10137680All Organisms → cellular organisms → Bacteria891Open in IMG/M
3300020409|Ga0211472_10023923All Organisms → cellular organisms → Bacteria2369Open in IMG/M
3300020421|Ga0211653_10252016All Organisms → cellular organisms → Bacteria769Open in IMG/M
3300020436|Ga0211708_10389119All Organisms → cellular organisms → Bacteria571Open in IMG/M
3300020464|Ga0211694_10564327All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.500Open in IMG/M
3300021959|Ga0222716_10047348All Organisms → Viruses → Predicted Viral3059Open in IMG/M
3300022935|Ga0255780_10246045All Organisms → cellular organisms → Bacteria886Open in IMG/M
3300023084|Ga0255778_10322289All Organisms → cellular organisms → Bacteria700Open in IMG/M
3300023176|Ga0255772_10057674All Organisms → Viruses → Predicted Viral2649Open in IMG/M
(restricted) 3300024255|Ga0233438_10116916All Organisms → Viruses → Predicted Viral1190Open in IMG/M
3300024344|Ga0209992_10304199All Organisms → cellular organisms → Bacteria650Open in IMG/M
3300025120|Ga0209535_1035391All Organisms → Viruses → Predicted Viral2301Open in IMG/M
3300025120|Ga0209535_1115825All Organisms → cellular organisms → Bacteria923Open in IMG/M
3300025120|Ga0209535_1192050All Organisms → cellular organisms → Bacteria586Open in IMG/M
3300025138|Ga0209634_1209374All Organisms → cellular organisms → Bacteria738Open in IMG/M
3300025502|Ga0208903_1075485All Organisms → cellular organisms → Bacteria790Open in IMG/M
3300025626|Ga0209716_1056720All Organisms → Viruses → Predicted Viral1262Open in IMG/M
3300025626|Ga0209716_1076572All Organisms → Viruses → Predicted Viral1009Open in IMG/M
3300025653|Ga0208428_1138681All Organisms → cellular organisms → Bacteria659Open in IMG/M
3300025653|Ga0208428_1206112All Organisms → cellular organisms → Bacteria501Open in IMG/M
3300025654|Ga0209196_1073358All Organisms → Viruses → Predicted Viral1074Open in IMG/M
3300025666|Ga0209601_1170526All Organisms → cellular organisms → Bacteria596Open in IMG/M
3300025685|Ga0209095_1103225All Organisms → cellular organisms → Bacteria893Open in IMG/M
3300025751|Ga0208150_1210695All Organisms → cellular organisms → Bacteria597Open in IMG/M
3300025803|Ga0208425_1151503All Organisms → cellular organisms → Bacteria514Open in IMG/M
3300025809|Ga0209199_1020892All Organisms → Viruses → Predicted Viral4074Open in IMG/M
3300025816|Ga0209193_1064487All Organisms → cellular organisms → Bacteria979Open in IMG/M
3300025849|Ga0209603_1344845All Organisms → cellular organisms → Bacteria505Open in IMG/M
3300025874|Ga0209533_1162183All Organisms → cellular organisms → Bacteria988Open in IMG/M
3300025876|Ga0209223_10268547All Organisms → cellular organisms → Bacteria791Open in IMG/M
3300026201|Ga0208127_1092762All Organisms → cellular organisms → Bacteria792Open in IMG/M
3300026491|Ga0228641_1041160All Organisms → Viruses → Predicted Viral1157Open in IMG/M
3300027704|Ga0209816_1168305All Organisms → cellular organisms → Bacteria761Open in IMG/M
3300027780|Ga0209502_10032729All Organisms → Viruses → Predicted Viral3007Open in IMG/M
3300027780|Ga0209502_10235892All Organisms → cellular organisms → Bacteria821Open in IMG/M
3300027788|Ga0209711_10209466All Organisms → cellular organisms → Bacteria893Open in IMG/M
3300027801|Ga0209091_10192287All Organisms → Viruses → Predicted Viral1024Open in IMG/M
3300027838|Ga0209089_10413292All Organisms → cellular organisms → Bacteria745Open in IMG/M
3300028115|Ga0233450_10359743All Organisms → cellular organisms → Bacteria592Open in IMG/M
3300031519|Ga0307488_10218824All Organisms → Viruses → Predicted Viral1276Open in IMG/M
3300031605|Ga0302132_10234177All Organisms → cellular organisms → Bacteria873Open in IMG/M
3300031622|Ga0302126_10104841All Organisms → cellular organisms → Bacteria1098Open in IMG/M
3300031622|Ga0302126_10188668All Organisms → cellular organisms → Bacteria742Open in IMG/M
3300031627|Ga0302118_10145212All Organisms → Viruses → Predicted Viral1161Open in IMG/M
3300031646|Ga0302133_10285037All Organisms → cellular organisms → Bacteria784Open in IMG/M
3300031695|Ga0308016_10170267All Organisms → cellular organisms → Bacteria850Open in IMG/M
3300031703|Ga0308002_1019947All Organisms → Viruses → Predicted Viral1637Open in IMG/M
3300032151|Ga0302127_10331000All Organisms → cellular organisms → Bacteria605Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine22.77%
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine17.82%
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh12.87%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine9.90%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous8.91%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater7.92%
Pelagic MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine3.96%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient1.98%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine1.98%
Deep OceanEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean0.99%
MarineEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Marine0.99%
Surface SeawaterEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater0.99%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater0.99%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater0.99%
Sackhole BrineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine0.99%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine0.99%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water0.99%
SeawaterEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Seawater0.99%
Marine SedimentEnvironmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment0.99%
Deep SubsurfaceEnvironmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface0.99%
Saline LakeEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake0.99%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000265Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - sample_A_09_P04_10EnvironmentalOpen in IMG/M
3300001344Pelagic Microbial community sample from North Sea - COGITO 998_met_02EnvironmentalOpen in IMG/M
3300001353Pelagic Microbial community sample from North Sea - COGITO 998_met_09EnvironmentalOpen in IMG/M
3300002242Marine sediment microbial communities from Kolumbo Volcano mats, Greece - white/grey matEnvironmentalOpen in IMG/M
3300006026Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_DNAEnvironmentalOpen in IMG/M
3300006027Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_<0.8_DNAEnvironmentalOpen in IMG/M
3300006810Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01EnvironmentalOpen in IMG/M
3300006916Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24EnvironmentalOpen in IMG/M
3300007234Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_<0.8_DNAEnvironmentalOpen in IMG/M
3300009409Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150EnvironmentalOpen in IMG/M
3300009428Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55EnvironmentalOpen in IMG/M
3300009440Pelagic marine microbial communities from North Sea - COGITO_mtgs_110512EnvironmentalOpen in IMG/M
3300009443Pelagic marine microbial communities from North Sea - COGITO_mtgs_110421EnvironmentalOpen in IMG/M
3300009449Pelagic marine microbial communities from North Sea - COGITO_mtgs_110426EnvironmentalOpen in IMG/M
3300009472Pelagic marine microbial communities from North Sea - COGITO_mtgs_110404EnvironmentalOpen in IMG/M
3300009476Pelagic marine microbial communities from North Sea - COGITO_mtgs_110407EnvironmentalOpen in IMG/M
3300009495Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531EnvironmentalOpen in IMG/M
3300009497Pelagic marine microbial communities from North Sea - COGITO_mtgs_120503EnvironmentalOpen in IMG/M
3300009507Pelagic marine microbial communities from North Sea - COGITO_mtgs_120607EnvironmentalOpen in IMG/M
3300009508Pelagic marine microbial communities from North Sea - COGITO_mtgs_120412EnvironmentalOpen in IMG/M
3300009705Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_128EnvironmentalOpen in IMG/M
3300009706Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_86EnvironmentalOpen in IMG/M
3300009786Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_126EnvironmentalOpen in IMG/M
3300010883western Arctic Ocean co-assemblyEnvironmentalOpen in IMG/M
3300012954Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St18 metaGEnvironmentalOpen in IMG/M
3300014959Marine microbial communities to study oil droplet degradation from Trondheimsfjord, Norway - 0148 : 4 days incubationEnvironmentalOpen in IMG/M
3300016747Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 071409BT metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300017697Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.2_DNA (version 2)EnvironmentalOpen in IMG/M
3300017727Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 24 SPOT_SRF_2011-07-20EnvironmentalOpen in IMG/M
3300017730Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 40 SPOT_SRF_2013-02-13EnvironmentalOpen in IMG/M
3300017752Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 23 SPOT_SRF_2011-06-22EnvironmentalOpen in IMG/M
3300017753Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 30 SPOT_SRF_2012-01-26EnvironmentalOpen in IMG/M
3300017763Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 33 SPOT_SRF_2012-06-20EnvironmentalOpen in IMG/M
3300017770Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 15 SPOT_SRF_2010-09-15 (version 2)EnvironmentalOpen in IMG/M
3300017782Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 3 SPOT_SRF_2009-08-19EnvironmentalOpen in IMG/M
3300017818Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101401AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017985Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101412BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017986Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101405AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018416Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011502XT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018420Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011512CT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018426Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101402AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018876Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011513CT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300020166Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160426_1EnvironmentalOpen in IMG/M
3300020276Marine microbial communities from Tara Oceans - TARA_E500000075 (ERX289007-ERR315858)EnvironmentalOpen in IMG/M
3300020377Marine microbial communities from Tara Oceans - TARA_B100000927 (ERX556007-ERR599065)EnvironmentalOpen in IMG/M
3300020379Marine microbial communities from Tara Oceans - TARA_B100000902 (ERX556001-ERR599168)EnvironmentalOpen in IMG/M
3300020381Marine microbial communities from Tara Oceans - TARA_A100001011 (ERX291769-ERR318620)EnvironmentalOpen in IMG/M
3300020409Marine microbial communities from Tara Oceans - TARA_A100001403 (ERX555912-ERR599106)EnvironmentalOpen in IMG/M
3300020421Marine microbial communities from Tara Oceans - TARA_B100000902 (ERX556005-ERR599007)EnvironmentalOpen in IMG/M
3300020436Marine microbial communities from Tara Oceans - TARA_B100000424 (ERX556009-ERR598984)EnvironmentalOpen in IMG/M
3300020464Marine microbial communities from Tara Oceans - TARA_B100000530 (ERX556075-ERR599101)EnvironmentalOpen in IMG/M
3300021959Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13DEnvironmentalOpen in IMG/M
3300022935Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071405AT metaGEnvironmentalOpen in IMG/M
3300023084Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071405CT metaGEnvironmentalOpen in IMG/M
3300023176Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071411BT metaGEnvironmentalOpen in IMG/M
3300024255 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_10_MGEnvironmentalOpen in IMG/M
3300024344Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025120Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)EnvironmentalOpen in IMG/M
3300025138Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)EnvironmentalOpen in IMG/M
3300025502Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKJ (SPAdes)EnvironmentalOpen in IMG/M
3300025626Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531 (SPAdes)EnvironmentalOpen in IMG/M
3300025653Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025654Pelagic marine microbial communities from North Sea - COGITO_mtgs_110509 (SPAdes)EnvironmentalOpen in IMG/M
3300025666Pelagic marine microbial communities from North Sea - COGITO_mtgs_110426 (SPAdes)EnvironmentalOpen in IMG/M
3300025685Pelagic marine microbial communities from North Sea - COGITO_mtgs_110404 (SPAdes)EnvironmentalOpen in IMG/M
3300025751Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025803Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025809Pelagic marine microbial communities from North Sea - COGITO_mtgs_110523 (SPAdes)EnvironmentalOpen in IMG/M
3300025816Pelagic marine microbial communities from North Sea - COGITO_mtgs_100330 (SPAdes)EnvironmentalOpen in IMG/M
3300025849Pelagic marine microbial communities from North Sea - COGITO_mtgs_120607 (SPAdes)EnvironmentalOpen in IMG/M
3300025874Pelagic Microbial community sample from North Sea - COGITO 998_met_04 (SPAdes)EnvironmentalOpen in IMG/M
3300025876Pelagic Microbial community sample from North Sea - COGITO 998_met_06 (SPAdes)EnvironmentalOpen in IMG/M
3300026201Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306SV45 (SPAdes)EnvironmentalOpen in IMG/M
3300026491Seawater microbial communities from Monterey Bay, California, United States - 52DEnvironmentalOpen in IMG/M
3300027704Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG017-DNA (SPAdes)EnvironmentalOpen in IMG/M
3300027780Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_90 (SPAdes)EnvironmentalOpen in IMG/M
3300027788Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_88 (SPAdes)EnvironmentalOpen in IMG/M
3300027801Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_128 (SPAdes)EnvironmentalOpen in IMG/M
3300027838Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150 (SPAdes)EnvironmentalOpen in IMG/M
3300028115Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011501CT (spades assembly)EnvironmentalOpen in IMG/M
3300031519Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2EnvironmentalOpen in IMG/M
3300031605Marine microbial communities from Western Arctic Ocean, Canada - CB9_32.1EnvironmentalOpen in IMG/M
3300031622Marine microbial communities from Western Arctic Ocean, Canada - CB4_20mEnvironmentalOpen in IMG/M
3300031627Marine microbial communities from Western Arctic Ocean, Canada - AG5_33.1EnvironmentalOpen in IMG/M
3300031646Marine microbial communities from Western Arctic Ocean, Canada - CB9_33.1EnvironmentalOpen in IMG/M
3300031695Marine microbial communities from water near the shore, Antarctic Ocean - #233EnvironmentalOpen in IMG/M
3300031703Marine microbial communities from water near the shore, Antarctic Ocean - #34EnvironmentalOpen in IMG/M
3300032151Marine microbial communities from Western Arctic Ocean, Canada - CB4_SCMEnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
LP_A_09_P04_10DRAFT_104809623300000265MarineMRKNHNKLYYGKFRHKTEFRIPGSLMFYPTTDEHLLKIKKDYPDA
JGI20152J14361_1006959623300001344Pelagic MarineMRKNHNKLYYGKYRHKTVFKLPGSLMFYPTTDEHLMKIKN
JGI20159J14440_1008654923300001353Pelagic MarineMRKHHNKLFYGKYRYKTVFEMPGSLMFYPTTDQYLTNLKEKNVG
KVWGV2_1097696923300002242Marine SedimentMRKHHNKLYYGKFRHRTEFTLPGSLMFYPTTDEHLIRIKNDYPDAP
Ga0075478_1006659623300006026AqueousMRKHHNKLYYGRFKHKTIFKIPGSLMFYPTTDEYL
Ga0075462_1006237113300006027AqueousMRKNHNKLYYGKYRHKTVFKLPGSLMFYPTTDEHLIKIKNDYKDLPDVNH
Ga0070754_1023573313300006810AqueousMRKHHNRLYYGRFRHKTTFKIPGSLMFYPTTDEYL
Ga0070750_1048175923300006916AqueousMRKHHNKLYYGKFRHKTVFKIPGSLMFFPTTSDYLMTIKEKY
Ga0075460_1023881513300007234AqueousMRKNHNKLYYGKYRHKTEFRIPGSLMFYPTTDEHLLKIKKDYPDAPD
Ga0114993_1090881723300009409MarineMRKHHNKLYYGKYRYKTIFKMPGSLMFYPTTDQYLTNLK
Ga0114993_1104039613300009409MarineMRKHHNKLFYGKYRYKTVFEMPGSLMFYPTSDQYLTNLKQKNVGLRD
Ga0114915_104772323300009428Deep OceanMRKHHNKLYYGKYRYKTIFKMPGSLMFYPTTDQYLTNLKE
Ga0115561_134279823300009440Pelagic MarineMRKHHNKLFYGKYRYKTVFEMPGSLMFYPTTDQYLTNLKEKNVGLRDLNNL
Ga0115557_127314513300009443Pelagic MarineMRKNHNKLYYGKYRHKTVFRLPGSLMFYPTTDEHLLHIQKEYQNAPDMCHLAS
Ga0115558_127532323300009449Pelagic MarineMRKHHNKLYYGKYRYKTVFKMPGSLMFYPTTDQYLTNLKEKNV
Ga0115554_138068823300009472Pelagic MarineMRKNHNKLYYGKYKHKTVFKLPGSLMFYPTTDEHLMKIKN
Ga0115555_145835023300009476Pelagic MarineMRKHHNKLYYGKYRNKTMFSMPGSLMFYPTTDQYLVN
Ga0115571_102607943300009495Pelagic MarineMRKHHNKLFYGKYRYKTVFEMPGSLMFYPTSDQYLTNLK
Ga0115571_144559023300009495Pelagic MarineMRKHHNRLYYGKYRSKTMFSMPGSLMFYPTTDQYLVNLKKKYEG
Ga0115569_1048447613300009497Pelagic MarineMRKNHNKLYYGKYRHKTIFKLPGSLMFYPTTDEHLIKIKNDYKDLPDMN
Ga0115572_1076738613300009507Pelagic MarineMRRNHNKLYYGKYRHKTVFKLPGSLMFYPTTDEHLMKLKNDYKDLP
Ga0115567_1014671923300009508Pelagic MarineMRKNHNKLYYGKYRHKTVFKLPGSLMFYPTTDEHLLKIKNDY
Ga0115000_1050435613300009705MarineMRKHHNKLYYGKYRYKTVFKMPGSLMFYPTTDQYLTNLKEKNVGLRDLNNLA
Ga0115002_1049629323300009706MarineMRKHHNKLFYGKYRYKTVFEMPGSLMFYPTTDQYLTNLKEKNVGLK
Ga0115002_1050533123300009706MarineMRKHHNKLYYGKYRYKTIFKMPGSLMFYPTTDQYL
Ga0114999_1034355213300009786MarineMRKHHNKLYYGKDRDKTVFKMPGSLMFYPTTDQYLTKLKEKNVGLR
Ga0133547_1039278643300010883MarineMRKHHNKLYYGKYRYKTVFKMPGSLMFYPTTDQYLTNLKEKNVGL
Ga0163111_1166049723300012954Surface SeawaterMRKNHNKLYYGKFRHKTEFKMPGSLMFYPTTDEHLIKIKKDYPD
Ga0134299_106227123300014959MarineMRKNHNRLYYGKYRHKTIFRLPGSLMFYPTTDEHLMKIK
Ga0182078_1054299023300016747Salt MarshMRKHHNRLYYGKYRHKTVFKIPGSLMFFPTTSDYLMTIKEKYP
Ga0180120_1004169423300017697Freshwater To Marine Saline GradientMRKNHNKLYYGKYRHKTVFRLPGSLMFYPTTDEHLLHLQKEY
Ga0180120_1042577023300017697Freshwater To Marine Saline GradientMRRNHNKLYYGKYRHKTVFRLPGSLMFYPTTDEHLLHLQKEY
Ga0181401_114831923300017727SeawaterMRKNHNKLYYGKYRHKTVFKLPGSLMFYPTTDEHLLWIQKEYPTAPDMCH
Ga0181417_111143423300017730SeawaterMRKNHNKLYYGRYRNKTVFKMPGSLIFYPTTDEHLIEIKRRHPN
Ga0181400_122605423300017752SeawaterMRKNHNKLYYGKYRHKTVFKLPGSLMFYPTTDEHLLKIKKDYPDAPDMNKLA
Ga0181407_105228113300017753SeawaterMRKNHNKLYYGRYRHKTVFKLPGSLMFYPTTDEHLLYLKKEYADAPDI
Ga0181410_105164113300017763SeawaterMRKHHNKLYYGKYRYKTIFKMPGSIQFYPTTNEHLISIKKRHYDA
Ga0181410_110594423300017763SeawaterMRKNHNRLYYGKYRHKTVFKLPGSLMFYPTTDEHLVHLKKEYADAP
Ga0187217_131220823300017770SeawaterMRKNHNKLYYGKFRHKTEFKMPGSLMFYPTTDEHLLKIKKDYPDAPDMNKLA
Ga0181380_126565223300017782SeawaterMRKNHNKLYYGKYRHKTVFKLPGSLMFYPTTDEHLMKIKNDYKDLP
Ga0181565_1018271823300017818Salt MarshMRKNHNKLYYGKYRHKTVFRLPGSLMFYPTTDEHLMKLKNDYKDLPD
Ga0181565_1037092013300017818Salt MarshMRKNHNRLYYGKYRYKTVFKMPGSLIFYPTTDEHLQHVK
Ga0181576_1048846923300017985Salt MarshMRKNHNRFYYGKYRYKTVFKMPGSLIFYPTTDEHLKH
Ga0181569_1061293323300017986Salt MarshMRKNHNRLYYGKYRYKTVFKMPGSLIFYPTTDEHLRHIKRIHPDLPDINFL
Ga0181553_1041183723300018416Salt MarshMRKNHNRLYYGKYRYKTVFKMPGSLIFYPTTDEHLR
Ga0181563_1057920223300018420Salt MarshMRKNHNRLYYGKYRYKTVFKMPGSLIFYPTTDENLLHIKRIHPDLPDINFLA
Ga0181566_1041328323300018426Salt MarshMRKSHNKLYYGKYRCKTEFKLPGSLMFYPTTDSHLLHIKRIYHDAS
Ga0181564_1049869123300018876Salt MarshMRKNHNRLYYGKYRYKTVFKMPGSLIFFPTTDDHLQHIKRIHPDLPD
Ga0206128_124884313300020166SeawaterMRKNHNKLYYGKYRHKTVFRLPGSLMFYPTTDEHLLHIQ
Ga0211509_107747713300020276MarineMRKHHNKLYYGKFRHRTEFTLPGSLMFYPTTDEHLIRIKNDYPDA
Ga0211647_1011742613300020377MarineMRKNHNKLYYGRYRNKTVFKMPGSLIFYPTTDEHLKQIKQRHPNVPNIN
Ga0211652_1004507823300020379MarineMRKHHNRLYYGKYRYKTIFKMPGSIIFYPTTNEHLNNIKKRHANTT
Ga0211652_1024464713300020379MarineMRKNHNKLYYGKYRHKTVFKLPGSLMFYPTTDEHLMKIKNDYKDLPDLNHLAS
Ga0211476_1013768013300020381MarineMRKHHNKLYYGKFKHKTEFKMPGSLMFYPTTDEHLIKIKKDYPDAPD
Ga0211472_1002392313300020409MarineMRKHHNKLYYSKYKVKTVFKLPGSLMFYPTTDQYLTS
Ga0211653_1025201623300020421MarineMRKNHNKLYYGKYRHKTVFRLPGSLMFYPTTDEHLM
Ga0211708_1038911923300020436MarineMRKHHNRLYYGKHRHKTVFKLPGSLIFYPTTDDHLEHVKQLHHDLPDINFLADFIIKH
Ga0211694_1056432723300020464MarineMRKNHNRLYYGKYRYKTVFKLPGSLIFFPTNNEHLLHIKKIHPDLPDINYLADFII
Ga0222716_1004734813300021959Estuarine WaterMRKNHNKLYYGKYRHKTVFRLPGSLMFYPTTDEHLLHLQKEYS
Ga0255780_1024604513300022935Salt MarshMRKHHNKLYYGKFRHKTVFKIPGSLMFFPTTSDYLMTIKEKYPDYK
Ga0255778_1032228923300023084Salt MarshMRKHHNKLYYGKFRHKTVFKIPGSLMFFPTTSDYLMTIKEKYPD
Ga0255772_1005767433300023176Salt MarshLYYGKYRHKTVFKIPGSLMFFPTTSDYLMTIKEKYPE
(restricted) Ga0233438_1011691613300024255SeawaterMRKHHNKLYYGKYRSKTMFSMPGSLMFYPTTDQYLVNLKKKY
Ga0209992_1030419913300024344Deep SubsurfaceMRKNHNKLYYGRYRNKTVFKMPGSLIFYPTTDAHLIEIKRRHPNTPD
Ga0209535_103539123300025120MarineMRKHHNKLYYGKYRYKTVFKMPGSLMFYPTTDQYLTNLKEKNVGLRD
Ga0209535_111582513300025120MarineMRKNHNKLYYGKFRHKTEFRIPGSLMFYPTTDEHL
Ga0209535_119205013300025120MarineMRKHHNKLYYGKYRYKTVFKMPGSLMFYPTTDQYLTNLKE
Ga0209634_120937413300025138MarineMRKHHNKLYYGKYRYKTIFKMPGSLMFYPTTDQYLTNLKEKNG
Ga0208903_107548513300025502Saline LakeMRKHHNRLYYGKYRSKTMFSMPGSLMFYPTTDQYLVNLKKKYEGLSD
Ga0209716_105672023300025626Pelagic MarineMRKNHNKLYYGKYRHKTVFKLPGSLMFYPTTDEHLMKIKNDYK
Ga0209716_107657213300025626Pelagic MarineMRKHHNKLFYGKYRYKTVFEMPGSLMFYPTSDQYLTNLKQKNVGLRDL
Ga0208428_113868113300025653AqueousMRKHHNRLYYGKYRHKTVFKIPGSLMFFPTTSDYLMTIK
Ga0208428_120611213300025653AqueousMRKNHNKLYYGKYRHKTVFRLPGSLMFYPTTDEHLMKLKNDYK
Ga0209196_107335823300025654Pelagic MarineMRKNHNKLYYGKYRHKTIFRLPGSLMFYPTTDEHLMKIKNDY
Ga0209601_117052613300025666Pelagic MarineMRKNHNKLYYGKYRHKTVFRLPGSLMFYPTTDEHLLHIQKEYQN
Ga0209095_110322523300025685Pelagic MarineMRRNHNKLYYGKYRHKTVFRLPGSLMFYPTTDEHL
Ga0208150_121069523300025751AqueousMRKNHNKLYYGKYRHKTVFRLPGSLMFYPTTDEHLLHLQKEYSTA
Ga0208425_115150323300025803AqueousMRKNHNKLYYGKYRHKTVFKLPGSLMFYPTTDEHLMKLKNDYKDLPD
Ga0209199_102089263300025809Pelagic MarineMRKHHNKLFYGKYRYKTVFEMPGSLMFYPTSDQYLTNLKQKNVGLRDLNN
Ga0209193_106448713300025816Pelagic MarineMRKNHNKLYYGKYRHKTVFKLPGSLMFYPTTDEHL
Ga0209603_134484523300025849Pelagic MarineMRKNHNKLYYGKYRHKTVFKLPGSLMFYPTTDEHLL
Ga0209533_116218323300025874Pelagic MarineMRKNHNKLYYGKYRHKTVFKLPGSLMFYPTTDEHLLHLQK
Ga0209223_1026854723300025876Pelagic MarineMRKNHNKLYYGKYRHKTVFRLPGSLMFYPTTDEHLMKLK
Ga0208127_109276223300026201MarineMRKNHNKLYYGKYRYKTVFKMPGSLIFFPTNNEHL
Ga0228641_104116023300026491SeawaterMRKNHNKLYYGKYRHKTIFRLPGSLMFYPTTDEHLVH
Ga0209816_116830523300027704MarineMRKHHNKLYYGKYRSKTMFSMPGSLMFYPTTDQYLVNLKKKYEGLSD
Ga0209502_1003272943300027780MarineMRKHHNKLYYGKYRYKTVFKMPGSLMFYPTTDQYLTNLKEKNVGLRDLHNLA
Ga0209502_1023589213300027780MarineMRKHHNKLYYGKYRSKTMFSMPGSLMFYPTTDQYLVNLKKKYEG
Ga0209711_1020946613300027788MarineMRKHHNKLYYGKYRYKTVFKMPGSLMFYPTTDQYLTNLKEKNVGLRDLNNLAD
Ga0209091_1019228713300027801MarineMRKHHNKLYYGKYRYKTVFKMPGSLMFYPTTDQYLTNLKEKNVGLR
Ga0209089_1041329223300027838MarineMRKHHNKLYYGKYRYKTIFKMPGSLMFYPTTDQYLTN
Ga0233450_1035974323300028115Salt MarshMRKNHNKLYYGKYRHKTVFRLPGSLMFYPTTDEHLIKLKNDYKDLPDMN
Ga0307488_1021882413300031519Sackhole BrineMRKHHNKLYYGKYRSKTMFSMPGSLMFYPTTDQYLVN
Ga0302132_1023417723300031605MarineMRKHHNKLYYGKYRYKTVFKMPGSLMFYPTTDQYLTNLKEKNVGLRDLNN
Ga0302126_1010484113300031622MarineMRKHHNKLYYGKYRSKTMFSMPGSLMFYPTTDQYL
Ga0302126_1018866823300031622MarineMRKHHNKLYYGKYRYKTIFKMPGSLMFYPTTDQYLINLKKKNVGL
Ga0302118_1014521213300031627MarineMRKHHNKLYYGKYRYKTIFKMPGSLMFYPTTDQYLTNLKEKNV
Ga0302133_1028503713300031646MarineMRKHHNKLYYGKYRYKTVFKMPGSLMFYPTTDQYLT
Ga0308016_1017026723300031695MarineMRKHHNKLYYGKYRYKTIFKMPGSLMFYPTSDQYLINLKKKNVGLRD
Ga0308002_101994713300031703MarineMRKHHNKLYYGKFVYKTVFKMPASLMFYPTTDQYLISLKEKWKGLPDL
Ga0302127_1033100013300032151MarineMRKHHNKLYYGKYRYKTVFKMPGSLMFYPTTDQYLTNLKEK

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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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