Metagenome / Metatranscriptome Family F102756

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F102756
Family Type	Metagenome / Metatranscriptome
Number of Sequences	101
Average Sequence Length	71 residues
Representative Sequence	LTPTVPPPPPHRLHDEAIEQLLASGERRRELVALFGEAGYRELSALARRAQQVRRAGPVTYVLPGLM
Number of Associated Samples	60
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	85.86 %
% of genes near scaffold ends (potentially truncated)	96.04 %
% of genes from short scaffolds (< 2000 bps)	90.10 %
Associated GOLD sequencing projects	56
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.46

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (94.059 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil (43.564 % of family members)
Environment Ontology (ENVO)	Unclassified (48.515 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (50.495 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 38.95% β-sheet: 0.00% Coil/Unstructured: 61.05%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.46
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.46
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF04314	PCuAC	80.20
PF03466	LysR_substrate	16.83
PF00293	NUDIX	0.99
PF02826	2-Hacid_dh_C	0.99
PF00753	Lactamase_B	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG2847	Copper(I)-binding protein	Inorganic ion transport and metabolism [P]	80.20

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	94.06 %
Unclassified	root	N/A	5.94 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	94.06 %
Unclassified	root	N/A	5.94 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	94.06 %
Unclassified	root	N/A	5.94 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	94.06 %
Unclassified	root	N/A	5.94 %

Name	Rank	Taxonomy	Distribution
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	60.40 %
Unclassified	root	N/A	5.94 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.99 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	51.49 %
Unclassified	root	N/A	5.94 %
Nevskiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales	0.99 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.99 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
unclassified Xanthomonadales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales	51.49 %
Unclassified	root	N/A	5.94 %
Steroidobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae	0.99 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.99 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
Xanthomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	51.49 %
Unclassified	root	N/A	5.94 %
Steroidobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter	0.99 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.99 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
Xanthomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	51.49 %
Unclassified	root	N/A	5.94 %
Steroidobacter denitrificans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	0.99 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.99 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.99 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001213\|JGIcombinedJ13530_105003547	All Organisms → cellular organisms → Bacteria → Proteobacteria	541	Open in IMG/M
3300001213\|JGIcombinedJ13530_106829801	All Organisms → cellular organisms → Bacteria → Proteobacteria	981	Open in IMG/M
3300003910\|JGI26437J51864_10132634	Not Available	569	Open in IMG/M
3300004050\|Ga0055491_10153364	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	605	Open in IMG/M
3300004051\|Ga0055492_10093313	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	665	Open in IMG/M
3300004058\|Ga0055498_10053246	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	720	Open in IMG/M
3300004282\|Ga0066599_100617370	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	730	Open in IMG/M
3300004463\|Ga0063356_100210372	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2306	Open in IMG/M
3300004481\|Ga0069718_15978973	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	841	Open in IMG/M
3300006845\|Ga0075421_101593004	All Organisms → cellular organisms → Bacteria → Proteobacteria	710	Open in IMG/M
3300009009\|Ga0105105_10434342	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	738	Open in IMG/M
3300009075\|Ga0105090_10423086	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	811	Open in IMG/M
3300009075\|Ga0105090_10679564	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	625	Open in IMG/M
3300009075\|Ga0105090_10925110	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	531	Open in IMG/M
3300009081\|Ga0105098_10184439	All Organisms → cellular organisms → Bacteria → Proteobacteria	956	Open in IMG/M
3300009085\|Ga0105103_10206851	All Organisms → cellular organisms → Bacteria → Proteobacteria	1051	Open in IMG/M
3300009085\|Ga0105103_10669649	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	595	Open in IMG/M
3300009111\|Ga0115026_10528812	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	882	Open in IMG/M
3300009111\|Ga0115026_10701538	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	780	Open in IMG/M
3300009165\|Ga0105102_10016372	All Organisms → cellular organisms → Bacteria → Proteobacteria	2932	Open in IMG/M
3300009165\|Ga0105102_10434708	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	703	Open in IMG/M
3300009167\|Ga0113563_12209125	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	661	Open in IMG/M
3300009169\|Ga0105097_10052656	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2193	Open in IMG/M
3300009169\|Ga0105097_10217362	All Organisms → cellular organisms → Bacteria → Proteobacteria	1053	Open in IMG/M
3300009170\|Ga0105096_10235743	All Organisms → cellular organisms → Bacteria → Proteobacteria	928	Open in IMG/M
3300009170\|Ga0105096_10417262	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	693	Open in IMG/M
3300009179\|Ga0115028_10624861	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	809	Open in IMG/M
3300009179\|Ga0115028_10685054	Not Available	780	Open in IMG/M
3300009179\|Ga0115028_10868170	Not Available	710	Open in IMG/M
3300009179\|Ga0115028_11638843	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	553	Open in IMG/M
3300009838\|Ga0116153_10340874	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	612	Open in IMG/M
3300010412\|Ga0136852_10766848	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	923	Open in IMG/M
3300012157\|Ga0137353_1086128	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	585	Open in IMG/M
3300014259\|Ga0075311_1145185	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	539	Open in IMG/M
3300014315\|Ga0075350_1170553	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	560	Open in IMG/M
3300021322\|Ga0210330_1118722	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	1272	Open in IMG/M
3300024056\|Ga0124853_1429485	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2429	Open in IMG/M
3300025966\|Ga0210105_1071192	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	533	Open in IMG/M
3300026061\|Ga0208541_1028255	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	565	Open in IMG/M
3300026486\|Ga0256820_1050688	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	640	Open in IMG/M
3300027723\|Ga0209703_1180208	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	784	Open in IMG/M
3300027805\|Ga0209229_10308692	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	697	Open in IMG/M
3300027880\|Ga0209481_10370016	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	732	Open in IMG/M
3300027885\|Ga0209450_10863343	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	649	Open in IMG/M
3300027890\|Ga0209496_10345944	All Organisms → cellular organisms → Bacteria → Proteobacteria	758	Open in IMG/M
3300027890\|Ga0209496_10454038	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	674	Open in IMG/M
3300027890\|Ga0209496_10459613	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	670	Open in IMG/M
3300027897\|Ga0209254_11060115	All Organisms → cellular organisms → Bacteria → Proteobacteria	521	Open in IMG/M
3300027972\|Ga0209079_10040420	All Organisms → cellular organisms → Bacteria → Proteobacteria	1569	Open in IMG/M
3300028380\|Ga0268265_10008712	All Organisms → cellular organisms → Bacteria → Proteobacteria	6860	Open in IMG/M
3300031873\|Ga0315297_10242583	All Organisms → cellular organisms → Bacteria → Proteobacteria	1492	Open in IMG/M
3300032177\|Ga0315276_11684649	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	655	Open in IMG/M
3300032177\|Ga0315276_11978259	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	595	Open in IMG/M
3300033406\|Ga0316604_10732123	All Organisms → cellular organisms → Bacteria → Proteobacteria	543	Open in IMG/M
3300033406\|Ga0316604_10803469	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	516	Open in IMG/M
3300033408\|Ga0316605_10257554	All Organisms → cellular organisms → Bacteria → Proteobacteria	1506	Open in IMG/M
3300033408\|Ga0316605_11412508	All Organisms → cellular organisms → Bacteria → Proteobacteria	675	Open in IMG/M
3300033408\|Ga0316605_12101931	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	549	Open in IMG/M
3300033408\|Ga0316605_12514045	All Organisms → cellular organisms → Bacteria → Proteobacteria	500	Open in IMG/M
3300033414\|Ga0316619_10261364	All Organisms → cellular organisms → Bacteria → Proteobacteria	1294	Open in IMG/M
3300033414\|Ga0316619_10551733	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	949	Open in IMG/M
3300033414\|Ga0316619_10638585	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	890	Open in IMG/M
3300033414\|Ga0316619_11042445	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	714	Open in IMG/M
3300033416\|Ga0316622_100165302	All Organisms → cellular organisms → Bacteria → Proteobacteria	2323	Open in IMG/M
3300033416\|Ga0316622_100606433	All Organisms → cellular organisms → Bacteria → Proteobacteria	1259	Open in IMG/M
3300033416\|Ga0316622_100825702	All Organisms → cellular organisms → Bacteria → Proteobacteria	1077	Open in IMG/M
3300033416\|Ga0316622_101692497	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	737	Open in IMG/M
3300033416\|Ga0316622_102894765	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	548	Open in IMG/M
3300033418\|Ga0316625_101031925	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	735	Open in IMG/M
3300033418\|Ga0316625_101909948	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	580	Open in IMG/M
3300033419\|Ga0316601_101456713	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	689	Open in IMG/M
3300033419\|Ga0316601_102485252	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	521	Open in IMG/M
3300033434\|Ga0316613_10689507	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	699	Open in IMG/M
3300033481\|Ga0316600_10042107	All Organisms → cellular organisms → Bacteria → Proteobacteria	2515	Open in IMG/M
3300033481\|Ga0316600_10115262	All Organisms → cellular organisms → Bacteria → Proteobacteria	1657	Open in IMG/M
3300033482\|Ga0316627_101197655	Not Available	751	Open in IMG/M
3300033482\|Ga0316627_101501655	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	681	Open in IMG/M
3300033482\|Ga0316627_102201086	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	576	Open in IMG/M
3300033482\|Ga0316627_102564862	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	538	Open in IMG/M
3300033483\|Ga0316629_11844969	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	500	Open in IMG/M
3300033485\|Ga0316626_10533385	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1003	Open in IMG/M
3300033487\|Ga0316630_10094178	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1985	Open in IMG/M
3300033487\|Ga0316630_11142080	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	688	Open in IMG/M
3300033487\|Ga0316630_11257727	All Organisms → cellular organisms → Bacteria → Proteobacteria	659	Open in IMG/M
3300033488\|Ga0316621_10143190	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1419	Open in IMG/M
3300033488\|Ga0316621_10169719	All Organisms → cellular organisms → Bacteria → Proteobacteria	1328	Open in IMG/M
3300033488\|Ga0316621_10825139	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	680	Open in IMG/M
3300033488\|Ga0316621_11478562	All Organisms → cellular organisms → Bacteria → Proteobacteria	521	Open in IMG/M
3300033488\|Ga0316621_11567596	All Organisms → cellular organisms → Bacteria → Proteobacteria	507	Open in IMG/M
3300033493\|Ga0316631_10178046	All Organisms → cellular organisms → Bacteria → Proteobacteria	806	Open in IMG/M
3300033513\|Ga0316628_103279701	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	588	Open in IMG/M
3300033521\|Ga0316616_104536240	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	522	Open in IMG/M
3300033550\|Ga0247829_11611577	All Organisms → cellular organisms → Bacteria → Proteobacteria	535	Open in IMG/M
3300033557\|Ga0316617_100077526	All Organisms → cellular organisms → Bacteria → Proteobacteria	2230	Open in IMG/M
3300033557\|Ga0316617_100273801	All Organisms → cellular organisms → Bacteria → Proteobacteria	1408	Open in IMG/M
3300033557\|Ga0316617_100656064	All Organisms → cellular organisms → Bacteria → Proteobacteria	983	Open in IMG/M
3300033557\|Ga0316617_102716432	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	515	Open in IMG/M
3300034053\|Ga0373890_033813	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	766	Open in IMG/M
3300034420\|Ga0373918_0214284	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	507	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	93.07%
Host-Associated	Host-Associated	3.96%
Engineered	Engineered	2.97%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	47.52%
Aquatic	Environmental → Aquatic	45.54%
Plants	Host-Associated → Plants	3.96%
Bioremediation	Engineered → Bioremediation	1.98%
Wastewater	Engineered → Wastewater	0.99%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	47.52%
Freshwater	Environmental → Aquatic → Freshwater	36.63%
Marine	Environmental → Aquatic → Marine	6.93%
Sediment	Environmental → Aquatic → Sediment	1.98%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.98%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.98%
Metal	Engineered → Bioremediation → Metal	1.98%
Anaerobic Digestor	Engineered → Wastewater → Anaerobic Digestor	0.99%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Terrestrial → Soil → Wetlands	46.53%
Sediment	Environmental → Aquatic → Freshwater → Sediment	24.75%
Wetlands	Environmental → Aquatic → Marine → Wetlands	5.94%
Lentic	Environmental → Aquatic → Freshwater → Lentic	3.96%
Lake	Environmental → Aquatic → Freshwater → Lake	3.96%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.97%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.98%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.98%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.98%
Unclassified	Engineered → Bioremediation → Metal → Unclassified	1.98%
Pond	Environmental → Aquatic → Freshwater → Pond	0.99%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	0.99%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	0.99%
Unclassified	Engineered → Wastewater → Anaerobic Digestor → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	46.53%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	24.75%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	3.96%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	2.97%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	2.97%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.98%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	1.98%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.98%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.98%
Unclassified	Engineered → Bioremediation → Metal → Unclassified → Unclassified	1.98%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	0.99%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	0.99%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.99%
Sediment	Environmental → Aquatic → Freshwater → Pond → Sediment	0.99%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	0.99%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.99%
Unclassified	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	43.56%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	14.85%
Wetland	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland	8.91%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	3.96%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	2.97%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	2.97%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	2.97%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	1.98%
Wetland	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland	1.98%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.98%
Sediment Slurry	Engineered → Bioremediation → Metal → Unclassified → Unclassified → Sediment Slurry	1.98%
Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment	0.99%
Freshwater And Sediment	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment	0.99%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	0.99%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Sediment	0.99%
Freshwater	Environmental → Aquatic → Freshwater → Pond → Sediment → Freshwater	0.99%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	0.99%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.99%
Mangrove Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Mangrove Sediment	0.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.99%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.99%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.99%
Anaerobic Digestor Sludge	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge	0.99%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001213	Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly)	Environmental	Open in IMG/M
3300003910	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - LWP11 LW	Environmental	Open in IMG/M
3300004050	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_CattailNLA_D2	Environmental	Open in IMG/M
3300004051	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_CattailNLB_D2	Environmental	Open in IMG/M
3300004058	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqB_D1	Environmental	Open in IMG/M
3300004282	Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - Initial sediment	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004481	Combined Assembly of Gp0112041, Gp0112042, Gp0112043	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300009009	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 1-3cm September2015	Environmental	Open in IMG/M
3300009075	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm March2015	Environmental	Open in IMG/M
3300009081	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015	Environmental	Open in IMG/M
3300009085	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 10-12cm September2015	Environmental	Open in IMG/M
3300009111	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_0915_D1	Environmental	Open in IMG/M
3300009165	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 1-3cm September2015	Environmental	Open in IMG/M
3300009167	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG - Illumina Assembly (version 2)	Environmental	Open in IMG/M
3300009169	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm May2015	Environmental	Open in IMG/M
3300009170	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm May2015	Environmental	Open in IMG/M
3300009179	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_0915_D1	Environmental	Open in IMG/M
3300009838	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC028_MetaG	Engineered	Open in IMG/M
3300010412	Mangrove sediment microbial communities from Mai Po Nature Reserve Marshes in Hong Kong, China - Maipo_10	Environmental	Open in IMG/M
3300012157	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT760_2	Environmental	Open in IMG/M
3300014259	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailB_D1	Environmental	Open in IMG/M
3300014315	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_TuleC_D1	Environmental	Open in IMG/M
3300021322	Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Washington, United States ? S.298 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300024056	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG (PacBio error correction)	Environmental	Open in IMG/M
3300025966	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_TuleC_D2 (SPAdes)	Environmental	Open in IMG/M
3300026061	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_TuleB_D1 (SPAdes)	Environmental	Open in IMG/M
3300026486	Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 7-17 PR6	Environmental	Open in IMG/M
3300027723	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm May2015 (SPAdes)	Environmental	Open in IMG/M
3300027734	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027805	Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)	Environmental	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300027885	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - LWP11 LW (SPAdes)	Environmental	Open in IMG/M
3300027890	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_0915_D1 (SPAdes)	Environmental	Open in IMG/M
3300027897	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - DIP11 DI (SPAdes)	Environmental	Open in IMG/M
3300027972	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 10-12cm September2015 (SPAdes)	Environmental	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300031873	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G15_0	Environmental	Open in IMG/M
3300032177	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_0	Environmental	Open in IMG/M
3300033406	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day20_CT	Environmental	Open in IMG/M
3300033408	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day20_noCT	Environmental	Open in IMG/M
3300033414	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D4_B	Environmental	Open in IMG/M
3300033416	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_OW2_C1_D5_C	Environmental	Open in IMG/M
3300033418	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_T1_C1_D1_A	Environmental	Open in IMG/M
3300033419	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day5_noCT	Environmental	Open in IMG/M
3300033434	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day10_CT_b	Environmental	Open in IMG/M
3300033481	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day5_CT	Environmental	Open in IMG/M
3300033482	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D1_C	Environmental	Open in IMG/M
3300033483	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_May_M1_C1_D1_A	Environmental	Open in IMG/M
3300033485	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_T1_C1_D5_A	Environmental	Open in IMG/M
3300033487	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_May_M1_C1_D6_A	Environmental	Open in IMG/M
3300033488	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_OW2_C1_D1_C	Environmental	Open in IMG/M
3300033493	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_May_M1_C1_D3_A	Environmental	Open in IMG/M
3300033513	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D5_C	Environmental	Open in IMG/M
3300033521	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D1_B	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M
3300033557	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D2_B	Environmental	Open in IMG/M
3300034053	Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - A1A4.3	Engineered	Open in IMG/M
3300034420	Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - A1A4.1	Engineered	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ13530_1050035472	3300001213	Wetland	VTRTAAPLALPVHRLHDDEIERLLATGERRADLVALFGEHGYRELRDLARRAAAKRAPEDGPRVYVLPGLMGSRIGTRGVLLDDV
JGIcombinedJ13530_1068298011	3300001213	Wetland	LSRSTLALPVHRLHDEEVERLLASGERRAELTALFGDKGYRELSALARRAAAKRRADGARVYVLPGLMGSRIGSRGLLLDDV
JGI26437J51864_101326341	3300003910	Freshwater Lake Sediment	LSRSTLALPVHRLHDEEVERLLASGERRTELTALFGDKGYRELSALARRAAAKRRAGGTRVYVLPGLMGSRIGSRGLLLDDV
Ga0055491_101533641	3300004050	Natural And Restored Wetlands	MTSAVPALPPPHRLHDEAIERLLASGQRRRELVALLGDDGYRELSALARRAQETRRAGPVTYVLPGLM
Ga0055492_100933132	3300004051	Natural And Restored Wetlands	LTSAVLPLTDPHRLHDEAIERLLASGEHRHELVALLGADGYRELSALARRAQEARRAGPPVYVLPGLMGSRIGTRGKLLDD
Ga0055498_100532462	3300004058	Natural And Restored Wetlands	MDARAPLPLHRLHDEDIEGLLASGERRQELTALLGAQGYRELSALARRAAESRIRGGPVVYVLPGLMGSRIGT
Ga0066599_1006173701	3300004282	Freshwater	MQARAPLPLHRLHDEEVVRLLESGERRQELTGLLGAEGYRELSSLAREAAASRHRGGQVVYVLPGLMGSRIGT
Ga0063356_1002103725	3300004463	Arabidopsis Thaliana Rhizosphere	VVAASSGALPVHRLHDEEIERLLATGERRADLVALFGEQGYRELSALARRAAAKRAPAGPRVYVLPGLM
Ga0069718_159789733	3300004481	Sediment	LSRSTLALPVHRLHDEEVERLLASGERRAELTALFGDQGYRELSALARRAAATRRADGARVYVLPGLMG
Ga0075421_1015930041	3300006845	Populus Rhizosphere	MAQARSTERSRLPVHRLHDEEVERLLASGERRAELVELLGEDAYRELSQLARQARAVRRRGGPTVYVLPGL
Ga0105105_104343421	3300009009	Freshwater Sediment	LPAPSFTLPVHRLHDEDIERLLATGERRAELRALFGEQGYRELSVLARSAAAKRGRPGPRVYLLPGLMGSRIGSRGVLLD
Ga0105090_104230861	3300009075	Freshwater Sediment	LTSAAPPPLLLHRLHDDDVERLLASGEHRREFTAYFGEAGYRELSALARSAAAVQRRGGPLTYVLPGLMGSRIGTR
Ga0105090_106795642	3300009075	Freshwater Sediment	LTSAVPPPLPPHRLHDEAIEQLLASGERRRELVALFGEAGYRELSALARRAQQVRRAGPVTYVLPGLMGSRIGTRGTLL
Ga0105090_109251102	3300009075	Freshwater Sediment	LTSAAPHPLLLHRLHDEEVERLLASGEHRREFTAYFGEAGYRELSALARSAAAVQRRGGPLTYVLPGLMGSRIGTR
Ga0105098_101844393	3300009081	Freshwater Sediment	LTSAAPPPLLLHRLHDDDVERLLASGEHRREFTAYFGEAGYRELSALARSAAAVQRRGGPLTYVLPGLMGSRIGT
Ga0105103_102068513	3300009085	Freshwater Sediment	LTSPAPPPLLLHRLHDEEVERLLASGEHRREFTAYFGEAGYRELSELARSAAAVRRRGGRLTYVLPGLMG
Ga0105103_106696492	3300009085	Freshwater Sediment	MTQATPALPVHRLHDEEIERLLAAGERRQELVALFGERGYRELSSLARRAAAKRTPQRGPRVYVLPGLMGSRIGSRGLLLD
Ga0115026_105288123	3300009111	Wetland	MTSEPAPPGATHRLHDEAVEQLLATGERRRELVALLGEQAYRELSLLARRARETRR
Ga0115026_107015383	3300009111	Wetland	LTSVVPPLPPPHRLPDEVIERLLASGERRRELVALLGENAYRDLSALARRAQQT
Ga0105102_100163723	3300009165	Freshwater Sediment	VTQGAPPPPPHRLHDAAIEQLLASGERRRELVALLGASGYRELSDLARRARDTRRGGPPV
Ga0105102_104347082	3300009165	Freshwater Sediment	LTPTVPPPPPHRLHDEAIEQLLASGERRRELVALFGEAGYRELSALARRAQQVRRAGPVTYVLPGLM
Ga0113563_122091251	3300009167	Freshwater Wetlands	MTSALPPPGAPHRLHDEAVEQLLASGERRRELVALLGEQAYRELSALARRARETRRGGPVVYVL
Ga0105097_100526564	3300009169	Freshwater Sediment	MTQATPALPVHRLHDEEIERLLAAGERRQELVALFGERGYRELSSLARRAAAKRTPQRGPRVYVLPGLMGSRIGSR
Ga0105097_102173623	3300009169	Freshwater Sediment	MTQATPELPVHRLHDEEIERLLAAGERRQELVALFGERGYRELSSLARQAAAKRAPQRGPRVYVLPGLMGSRIGS
Ga0105096_102357431	3300009170	Freshwater Sediment	LTSAAPPPLLLHRLHDDDVERLLASGEHRREFTAYFGEAGYRELSALARSAAAVQRRGGPLTYVLPGLMG
Ga0105096_104172622	3300009170	Freshwater Sediment	LTSVVPPLPPPHRLHDEAIERLLASGERRRELVALLGEVAYRDLSALARRAQDTRRAGPMVYVL
Ga0115028_106248611	3300009179	Wetland	MTSEPAPPGATHRLHDEAVEQLLASGERRRELVALLGEQAYRELSLLARRARETRRGGQVVYVLPGLMGSRIGTRGK
Ga0115028_106850541	3300009179	Wetland	LTDRARTLPVHRLQDEEIERLLATGERRSELVALFGEQGYRELSVLARRAATKRASAGPRVYVLPG
Ga0115028_108681701	3300009179	Wetland	LSRSTLALPVHRLHDEEVERLLASGERRAELTALFGDKGYRELSALARRAAAKRRADGARVYVLPGLMGSRIG
Ga0115028_116388432	3300009179	Wetland	LTPAAPPPLLLHRLHDEEVERLLASGEHRRECTAFFGEAGYRELSELARSAAATRRRGGRVVYVLPGL
Ga0116153_103408742	3300009838	Anaerobic Digestor Sludge	LTSAAPPPLLLHRLHDDDVERLLASGEHRREFTAYFGEAGYRELSALARDAAAVQRRGGPLTYVLPGLMGSRIGT
Ga0136852_107668481	3300010412	Mangrove Sediment	LTAAAPTPLAPHRLHDEAIEQLLASGERKRELGALLGDEAYRELSDLARRARATRRVGPVVYVLPGLMGSRIGTRGKLLDD
Ga0137353_10861281	3300012157	Soil	VHRLHDEEVERLLASGERGSELTAMFGEKAYRELSALARRAAATRALPGPRVYVLPGLMGSRIGSRGVLL
Ga0075311_11451852	3300014259	Natural And Restored Wetlands	LTSVVAPLPPPHRLHDEAIERLLASGERRRELVALLGEEAYRELSALAVRAQDARRGGPVVYVLPGLMGS
Ga0075350_11705532	3300014315	Natural And Restored Wetlands	LTSPAPPPLLLHRLHDDEVERLLASGEHRREFTAYFGEAGYRELSALARSAGAVRRRGGPLTYVLPGLMGSRIGTRGRLLD
Ga0210330_11187221	3300021322	Estuarine	LTPPASPAPPLHRLHDEEVERLLASGEHRRELIALFGEAGYRELSGLARRAAAVRRRGVAVYVLPGLMGSRIGARGRLVDDVI
Ga0124853_14294855	3300024056	Freshwater Wetlands	MQGAPPPPPHRLHDAAIEQLLASGERRRELVALLGASGYRELSELARRARDTRRGGQPVYVLPG
Ga0210105_10711922	3300025966	Natural And Restored Wetlands	LTSAVLPLTDPHRLHDEAIERLLASGEHRHELVALLGADGYRELSALARRAQQTRRAGPP
Ga0208541_10282552	3300026061	Natural And Restored Wetlands	LTPPASPAPPLHRLHDEEVERLLASGEHRRELIALFGEAGYRELSGLARRAAAVRRRGVAVYVLPGLMGSRIGARGRLVDDV
Ga0256820_10506881	3300026486	Sediment	LTAADPEPLAPHRLHDEAIEQLLASGERKRDLVALLGEDAYRELSDLARRAQATRGAGPVVYVLPGLMGSR
Ga0209703_11802083	3300027723	Freshwater Sediment	LTSPAPPPLPLHRLHDEEVERLLASGEYRREFVAYFGEAGYRELSELARSAAAVQRRGGPLTYVLPGLM
Ga0209087_11049661	3300027734	Freshwater Lake	MPRNRLAAPPAVTTLPLHRLHDEDVERLLALGERSEELRAALGTPAFRELSALARRAATQRGRRGPRVYVLPGLMGSRIGARGQLLDDVLWL
Ga0209229_103086921	3300027805	Freshwater And Sediment	MPSAVPPAAAPHRLHDEAIERLLASGERKRDLVALLGEDAYRELSGLARRAQAVRR
Ga0209481_103700161	3300027880	Populus Rhizosphere	MARARSTERSRLPVHRLHDEEIERLLATGERRAELVELLGEDGYRELSELARQARAVRRRGGPTVYVLPGLMGSRIGTRGRLLD
Ga0209450_108633432	3300027885	Freshwater Lake Sediment	LTSPAPPPLLLHRLHDEEVERLLASGERRREFVAYFGEAGYRELSGLARSAAALQRRGGPLTYVLPGL
Ga0209496_103459442	3300027890	Wetland	LTDRARTLPVHRLQDEEIERLLATGERRSELVALFGEQGYRELSVLARRAATKRASAGPRVYVLPGLMGSRIGSRG
Ga0209496_104540382	3300027890	Wetland	MQGAPPPPPHRLHDAAIEQLLASGERRRELVALLGASGYRELSALARRARDTRRGGPPVYVLPGLMGSRIGTRGRLLD
Ga0209496_104596132	3300027890	Wetland	MTSEPAPPGATHRLHDEAVEQLLASGERRRELVALLGEQAYRELSLLARRARETRRGGQVVYVLPG
Ga0209254_110601152	3300027897	Freshwater Lake Sediment	LTGPTLALPVHRLHDEDVERLLATGERKAELTALFGEQGYRELSALARRAAAKRSADGPRVYVLPGLMGSRIGSRGL
Ga0209079_100404201	3300027972	Freshwater Sediment	LTSPAPPPLLLHRLHDEEVERLLASGEHRREFTAYFGEAGYRELSELARSAAAVRRRGGRLTYVLPGLMGS
Ga0268265_100087121	3300028380	Switchgrass Rhizosphere	MAQARSTERSRLPVHRLHDEEVERLLATGERRAELVELLGEDAYRELSQLARQARAVRRRGGPTVYVLPG
Ga0315297_102425831	3300031873	Sediment	LTGPTLALPVHRLHDEEVERLLATGERRAQLKALFGEQGYRELSALARRAAARRGAAGPRVYVLPGLMGSR
Ga0315276_116846492	3300032177	Sediment	MDPRAPLPLHRLHDEDVVRLLETGERRQELTALLGAEGYRELSSLAREAAASRQRGGQVVYVLPGLM
Ga0315276_119782592	3300032177	Sediment	MESRAPLPLHRLHDEEIERLLASGERRHELTALFGAAGYRELSALARRAAVSRVRGGPVTYL
Ga0316604_107321231	3300033406	Soil	MTSALPPPGAPHRLHDEAVEQLLASGERRRELVALLGEQAYRELSALARRARETRRGGPVVYVLPGLMGSRIGTRGKWLDDVIWLDP
Ga0316604_108034691	3300033406	Soil	MTSEPAPPGATHRLHDEAVEQLLASGERRRELVALLGEQAYRELSLLARRARETRRGGQVVYVLPGLMGSRIG
Ga0316605_102575541	3300033408	Soil	MEARAPLPLHRLHDEEIERLLASGERKPELTALFGAEGYRELNALARRAAEARTRAGQVVYILPGLMGSR
Ga0316605_114125081	3300033408	Soil	LTSPVIALPVHRLHDEDIERLLASGERRAELSALFGEQGYRELSSLARRAAATRRPRGPRVYL
Ga0316605_121019312	3300033408	Soil	MPSAVPPSAAPHRLRDEAIERLLASGERKRELVALLGEDAYRELSELARRAQAVRRAGPVAYVLPGLM
Ga0316605_125140452	3300033408	Soil	LTSAAPPPLLLHRLHDDEVERLLASGEHRREFTAYFGEAGYRELSALARSAAAVQRRGGPLTYVLPGLMGSRIGTRGRLLDDVLWLDP
Ga0316619_102613641	3300033414	Soil	MTSALPPPGAPHRLHDEAVEQLLASGERRRELVALLGEQAYRELSALARRARETRRGGPVVYVLPGLMGSRIGTRGKWLDD
Ga0316619_105517331	3300033414	Soil	MQGAPPPPPHRLHDAAIEQLLASGERRRELVALLGASGYRELSALARRARDTRRGGPPVYVLPGLMGS
Ga0316619_106385853	3300033414	Soil	MPSAVPPAAAPHRLHDEAIERLLASGERKRELVALLGEDAYRELSGLARRAQAV
Ga0316619_110424451	3300033414	Soil	LTSVVPPLPPPHRLPDEVIERLLASGERRPELVALLGEDAYRDLSALARRAQQTRRAGPAVY
Ga0316622_1001653021	3300033416	Soil	VTTAVPPLAPPHRLHDEAIERLLASGERRRELIALLGEDAYRELRALARRAAEARRGGPVVYVLPGLMGSR
Ga0316622_1006064331	3300033416	Soil	LTPAAPPPLLLHRLHDEEVERLLASGEHRREFTAYFGETGYRELSELALSAAAVRRRGGPAVYVLPGLMGSRIG
Ga0316622_1008257021	3300033416	Soil	MPSAVPPAAAPHRLHDEAIERLLASGERKRELVALLGEEAYRELSGLARRAQAVRRAGPVAYVLPGLMGSRIGTRGKLLDD
Ga0316622_1016924973	3300033416	Soil	MPSAVPPAAAPHRLHDEAIERLLASGERKHELVALLGEDAYRELSGLARRAQAVRR
Ga0316622_1028947651	3300033416	Soil	LTSAVLPLTDPHRLHDEAIERLLASGEHRHELVALLGADGYRELSALARRAQQTRRAGPPVYVLPGL
Ga0316625_1010319252	3300033418	Soil	MTSEPAPPGATHRLHDEAVEQLLASGERRRELVALLGEQAYRELSLLARRARETRRGGPVVYVLPGLMGSRIGTRGKWL
Ga0316625_1019099482	3300033418	Soil	LTSAAPPPLLLHRLHDDEVERLLASGEHRREFTAYFGEAGYRELSALARSAAAVQRRGGPLTYVLPGLMGSRI
Ga0316601_1014567131	3300033419	Soil	LTSAVLPLTDPHRLHDEAIERLLASGEHRHELVALLGADGYRELSALARRAQETRRAGPPVYVL
Ga0316601_1024852522	3300033419	Soil	MTSEPAPPGATHRLHDEAVEQLLASGERRRELVALLGEQAYRELSALARRARETR
Ga0316613_106895072	3300033434	Soil	LTSAVLPLTDPHRLHDEAIERLLASGEHRHELVALLGADGYRELSALARRAQETRRAGPPVYVLPGLMGSRIGIRGKL
Ga0316613_111226592	3300033434	Soil	MTSALPPPGAPHRLHDEAVEQLLASGERRRELVALLGEQAYRELSALA
Ga0316600_100421075	3300033481	Soil	VNPVAQLPPHRLHDEDIERLLASGEHKAELVAQFGEAGYRELSALAKQAAAMRRRGGPLVYVLPGLMGSRI
Ga0316600_101152623	3300033481	Soil	MEARAPLPLHRLHDEEIERLLASGERKPELTALFGAEGYRELSALARRAAEARTRAGQVVYILPG
Ga0316627_1011976552	3300033482	Soil	MTQATPALPVHRLHDEEIERLLATGERRQELVALFGERGYRELSSLARRAAAKRAPQRGPRVYVLPGLM
Ga0316627_1015016551	3300033482	Soil	LTSAVPPLPPPHRLHDETIERLLASGERRRELVALLGEDGYRELSDLARRARETRRAGPLVYVLP
Ga0316627_1022010862	3300033482	Soil	MEPRAPLPLHRLHDEEIERLLESGDRRQELIAQFGADGYQELSALARQAAATRVRGGPVVYVLPGL
Ga0316627_1025648621	3300033482	Soil	MPSAVPPSAAPHRLRDEAIERLLASGERKRELVALLGEDAYRELSELARRAQAVRRAGPVAYVLPGLMGSRIGTRGK
Ga0316629_118449692	3300033483	Soil	LTDRARTLPVHRLHDEEIERLLATGERRSELVALFGEQGYRELSVLARRAATKRASAGPRVYVL
Ga0316626_105333853	3300033485	Soil	MPSAVPPAAAPHRLHDEAIERLLASGERKHELVALLGEDAYRELSGLARRAQAVRRAGPV
Ga0316630_100941784	3300033487	Soil	LTPAAPPPLLLHRLHDEEVERLLASGEHRREFTAYFGETGYRELNELARSAAAVRRRGGPAVYVLPGLMGSRIGTR
Ga0316630_111420801	3300033487	Soil	LTSAVLPLTDPHRLHDEAIERLLASGEHRHELVALLGADGYRELSALARRAQQTRRAGPPLYVLP
Ga0316630_112577272	3300033487	Soil	LNRSTLALPVHRLHDEEVERLLATGERRAELTSLFGDQGYRELSALARRAAARRRADGPRVYVLPGLMGSRIGSRGLLL
Ga0316621_101431903	3300033488	Soil	LSQAAQAPLHRRHDEDIERLLAGGECRRELTALLGESAYRELSALARQAAAVRRRGPVAYVLPGLMGSRIGTRGRLLD
Ga0316621_101697193	3300033488	Soil	MTSEPAPPGATHRLHDEAVEQLLASGERRRELVALLGEQAYRELSALARRARETRRGGPV
Ga0316621_108251391	3300033488	Soil	MPSAVPTAAAPHRLHDEAIERLLASGERRRELVALLGEDAYRELSGLARRAQAVRRAGPVAYVLPGLMGSRIGTRGKLLDD
Ga0316621_114785621	3300033488	Soil	VNPVAPLLPHRLHDEDIERLLASGDRKAELVAQFGAAGYRELSALAKQAAAVRRRGGPLVYVLPGLMGSRIGTRGRLIDDVLW
Ga0316621_115675962	3300033488	Soil	LTSAAPPPLLLHRLHDDDVERLLASGEHRREFTAYFGEAGYRELSALARNAAAVQRRGGPLTYVLPGLMGSRIGTRGRLLDDVLWLD
Ga0316631_101780461	3300033493	Soil	LTSVVPPLPPPHRLPDEAIERLLASGERRPELVALLGEDAYRDLSALARRAQQTRRTGP
Ga0316628_1032797011	3300033513	Soil	LTSAAPPPLLLHRLHDDEVERLLASGEHRREFTAYFGEAGYRELSELARNAAAVQRRGGPLTYVLPGLMGSRI
Ga0316616_1045362402	3300033521	Soil	MTSALPPPGAPHRLHDEAVEQLLASGERRRELVALLGEQAYRELSALARRARETRRGG
Ga0247829_116115772	3300033550	Soil	MAQARSTERSRLPVHRLHDEEVERLLATGERRAELVELLGEDAYRELSQLARQARAVRRRGGPTVYVLPGLM
Ga0316617_1000775264	3300033557	Soil	MTQATPALPVHRLHDEEIERLLATGERRQELVALFGERGYRELSSLARRAAAKRASQRGPRVYVLPGLMGSRIGSR
Ga0316617_1002738011	3300033557	Soil	MPSAVPPSAAPHRLRDEAIERLLASGERKRELVALLGEDAYRELSELARRAQAVRRAGPVAY
Ga0316617_1006560643	3300033557	Soil	MEPRAPLPLHRLHDEEIERLLESGDRRHELIAQFGADGYQELSALARQAAATRVRGGPVVYVLPGLMGSRI
Ga0316617_1027164322	3300033557	Soil	LTTAVLPLANPHRLHDEAIERLLASGEHRHELVALLGEEGYRELSALARRAQATRRGGPPVYVLPGLMGSRIGTRGKLLDDVI
Ga0373890_033813_1_204	3300034053	Sediment Slurry	VTQGAPPPPPHRLHDAAIEQLLVSGERRHELTALLGASGYRELSDLARRARDTRRGGPPVYVLPGLMG
Ga0373918_0214284_3_227	3300034420	Sediment Slurry	MTILLPPSGAPHRLHDETVEQLLASGERRRELIALLGEQAYRELSMLARRAQATRRGGPVVYVLPGLMGSRIGTR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F102756

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences