Basic Information | |
---|---|
Family ID | F102749 |
Family Type | Metagenome |
Number of Sequences | 101 |
Average Sequence Length | 60 residues |
Representative Sequence | SNSDYYFGRLADPEDIARFGPLSSPNVRHGNTGDTGDYPSEEVAQMAHSLAVKAITNP |
Number of Associated Samples | 74 |
Number of Associated Scaffolds | 101 |
Quality Assessment | |
---|---|
Transcriptomic Evidence | No |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 4.95 % |
% of genes near scaffold ends (potentially truncated) | 91.09 % |
% of genes from short scaffolds (< 2000 bps) | 97.03 % |
Associated GOLD sequencing projects | 69 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.32 |
Hidden Markov Model |
---|
|
Powered by Skylign |
Most Common Taxonomy | |
---|---|
Group | Bacteria (96.040 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
---|---|
GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (26.733 % of family members) |
Environment Ontology (ENVO) | Unclassified (44.554 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (61.386 % of family members) |
⦗Top⦘ |
Full Alignment |
---|
Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92 |
Powered by MSAViewer |
⦗Top⦘ |
Predicted Topology & Secondary Structure | |||||
---|---|---|---|---|---|
Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 31.40% β-sheet: 0.00% Coil/Unstructured: 68.60% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
|||||
Powered by Feature Viewer |
Structure Viewer | |
---|---|
| |
Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.32 |
Powered by PDBe Molstar |
⦗Top⦘ |
⦗Top⦘ |
Visualization |
---|
All Organisms Unclassified |
Powered by ApexCharts |
⦗Top⦘ |
Visualization |
---|
Soil Vadose Zone Soil Tropical Forest Soil Soil Grasslands Soil Soil Forest Soil Soil Tropical Forest Soil Corn, Switchgrass And Miscanthus Rhizosphere Populus Rhizosphere |
Powered by ApexCharts |
⦗Top⦘ |
Protein ID | Sample Taxon ID | Habitat | Sequence |
AF_2010_repII_A001DRAFT_100474031 | 3300000793 | Forest Soil | VIFKPSNSDYYFGRLADPEDIARFGPLSSPNVRHGNAGDTGDYPSEEVAQMAHSLAVKAITNP* |
AP72_2010_repI_A100DRAFT_10510991 | 3300000837 | Forest Soil | IFKPSNSDYYFGRLADPEDIARFGPLSSPNVRHGNTGDTGDYPSEEVAQMAHSLAVKAITNP* |
JGI10216J12902_1144773391 | 3300000956 | Soil | SHYSFGRLADPEDIARYGPLSTSPNARHAKTGDTGDYAPEEVAQMAH* |
JGI25614J43888_100426301 | 3300002906 | Grasslands Soil | SNSDYNFGRLADPGDIARYGPLSQSPNVRHGNTGDTGDYPPEEVAQMAHSLAVKAITTP* |
JGI25617J43924_100398513 | 3300002914 | Grasslands Soil | HVSVIFKPSDSYYNFGRLTDPEDVARYGPLSRSPNVRHAKTGDIDAYPPEEVAQMAHSLAVKAITSP* |
Ga0066398_100947572 | 3300004268 | Tropical Forest Soil | DSHYSFGRLADPEDIARYGPLSQSPNVREGKKTGDTGTYPLDEVARMAHTLAVKAVTTT* |
Ga0066674_100986102 | 3300005166 | Soil | FKPSDSHYNFGRLADPEDIARYGPLSRSSNVRHGKTGDTGEYPENEVAQMAYTLAVKAVTTT* |
Ga0066388_1007428681 | 3300005332 | Tropical Forest Soil | DYHFGRLADPEDIARFGPLSSLNVRHGNTGDTGDYPSEEVAQMAHSLAVKAITTP* |
Ga0066388_1012329424 | 3300005332 | Tropical Forest Soil | ADPEDIARHGPLSRSPNARHTKTGDTGDYPSEEVAQMAHTLAVKAVTSP* |
Ga0066388_1020909391 | 3300005332 | Tropical Forest Soil | PSNSDYYFGRLVDPEDIARFGPLSSPNLRYRDTGNTGDYPSEEVAQMAHSLAVKAITNP* |
Ga0066388_1040604791 | 3300005332 | Tropical Forest Soil | KPSDSHYSFGRLADPEDIARYGPLSQSPNAREGKTGDTGTYPSDEVARMAHTLAVKAVTTT* |
Ga0066388_1044309651 | 3300005332 | Tropical Forest Soil | VRVIFKPSNSDYYFGRLADPKDIARFGPLASPNVRHGNTGDTGDYPSEEVAQMAHSLAAKAITNP* |
Ga0066388_1057110542 | 3300005332 | Tropical Forest Soil | VIFKPSDSYYSFERLSDPADIALHGPLSRSSNARHAKTGDTGDYPSEEVAQMAHSLAVKAVTSP* |
Ga0070708_1020559321 | 3300005445 | Corn, Switchgrass And Miscanthus Rhizosphere | YYNFGRLTDPGDIARHGPLSQSPNVRHAKTGDTDAYPPEEVARMAHLLAVKAITSP* |
Ga0070698_1017585961 | 3300005471 | Corn, Switchgrass And Miscanthus Rhizosphere | YNFGRLTDPGDIARHGPLSQSPNVRHAKTGDTDAYPPEEVAQMAHLLAVKAITSP* |
Ga0066905_1000961351 | 3300005713 | Tropical Forest Soil | YSFGRLADPEDIARYGPLSQSPNVREGKKTGDTGTYPLDEVARMAHTLAVKAVTTT* |
Ga0066905_1002415421 | 3300005713 | Tropical Forest Soil | SHVNVIFKPSNSDYYFGRLADPEDIARFGPLSSPNVRHGNTGDTGDYPSEEVAQMAHSLAVKAITNP* |
Ga0066905_1005317403 | 3300005713 | Tropical Forest Soil | VSVIFKPSNSEYNFGRLADPADIARYGPLSQSPNVRHGNTGDTGDYPPEEVAQMAHSLAVKAITTP* |
Ga0066905_1007882492 | 3300005713 | Tropical Forest Soil | MTGVVRVDADISDYNFGRLADPKDIARYGPLSQSPNVRHGNTGDTGDYPPEEVAQMAHSLAVKAITTP* |
Ga0066905_1019472991 | 3300005713 | Tropical Forest Soil | SNSDYYFGRLADPEDIARFGPLSSPNVRHGNTGDTGDYPSEEVAQMAHSLAVKAITNP* |
Ga0066903_1028213591 | 3300005764 | Tropical Forest Soil | ADPEDIARFGPLSSPNVRHGNAGDTGDYPSEEVAQMAHSLAVKAITNP* |
Ga0066903_1039206241 | 3300005764 | Tropical Forest Soil | SRYNFGRLADPEDIAQYGPLSRSVNVRQGETGETGPYPSDEIAHMAYTLAVKAITTP* |
Ga0066903_1068596141 | 3300005764 | Tropical Forest Soil | DSYYSFGRLADPEDIARHGPLPRSPNARHTKTGDTGDYPSGEVAQMAHTLAVKAVTGP* |
Ga0066656_105397212 | 3300006034 | Soil | FKPSDSHYNFGRLADPEDIARYGPLSRSLNVRHGKTGDTGEYPESEVAQMAHTLAVKAVTTT* |
Ga0075431_1022363171 | 3300006847 | Populus Rhizosphere | ADPEDIARHGPLSRSPNVRHAKTGDTGAYPPEEVAQMAHSLAVKAITSP* |
Ga0099830_102593392 | 3300009088 | Vadose Zone Soil | FKPSDSYYNFGRLTDPEDVARYGPLSRSPNVRHAKTGDIDAYPPEEVAQMAHSLAVKAITSP* |
Ga0126374_119077461 | 3300009792 | Tropical Forest Soil | MTFKPSNSDYNFGRLADPGDIARYGPLSQSPNVRHGNTGDNGDYSPEEVAQMAHSLAVKAITTP* |
Ga0126380_119988152 | 3300010043 | Tropical Forest Soil | VIFKPSNSDYTFHRLADAEDIARCGPLSRSPTVGHGDTGDPGDYPSEEVAQMAHSLAVKAITTP* |
Ga0126373_118892652 | 3300010048 | Tropical Forest Soil | YVSVIFKPSDSHYSFGRLADPEDIARYGPLSQSPNVREGKTGDTGIYPSDEVASMAHTLAVKAVTTT* |
Ga0126370_105428183 | 3300010358 | Tropical Forest Soil | IFKPSDSHYSFGRLADPEDIARYGPLSQSPNVREGKKTGDTGTYPLDEVARMAHTLAVKAVTTT* |
Ga0126370_112884431 | 3300010358 | Tropical Forest Soil | HMSVLFKPSDSRYSFGRVADPKEIEQYGPRSRPTNVRHEKTGDTGEYPENEVAQMAHTLAVKAVTTV* |
Ga0126378_119808691 | 3300010361 | Tropical Forest Soil | DPEDIARHGPLSRSPNARHTKTGDTGDYLSEEVAQMAHTLAVKAVTSP* |
Ga0126377_101688021 | 3300010362 | Tropical Forest Soil | SNSNYYFGRLVDPEDIARFGPLSSPNVRHGNTGDTGEYPSEEVEHMAHSLAVKAITNP* |
Ga0126379_101949861 | 3300010366 | Tropical Forest Soil | RLADPEDIARHGPLSQSPSVGHAKTGDTGDYPSEEVAQMAHSLAVKAITTV* |
Ga0126379_117004483 | 3300010366 | Tropical Forest Soil | IFKPSNSDYYFGRLADPEDIARFGPLSSPNVRHGNTGDAGDYPSEEVARMAYSLAVKAITTP* |
Ga0126383_117519501 | 3300010398 | Tropical Forest Soil | PSNSEYNFGRLADPADIARYGPLSQSPNVRHGNTGDTGDYPPEEVAQMAHSLAVKAITTP |
Ga0137364_107298733 | 3300012198 | Vadose Zone Soil | GRLADPEDIARYGPLLQSPNVRHGNTGDTGDYPPEEVAQMAHSLAVKAVTSP* |
Ga0137367_100943833 | 3300012353 | Vadose Zone Soil | VSVIFKPSNSDYTFHRLADADDIARYGPLSRSPNVEHGDTGDTGDYPSEEVAQMAHSLAVKAITTP* |
Ga0137384_104245493 | 3300012357 | Vadose Zone Soil | VSVIFKPSDSYYSFGRLADPEDIARYGPLSQPPNVRHGNTGDTGDYPPEEVAQMAHSLAVKAITTP* |
Ga0137361_107087701 | 3300012362 | Vadose Zone Soil | PTDSHYTFDRLTDPEDIARQGPLSPSPNVRHGNTGDTGDYPSEEVAQMARLLAVKAITNP |
Ga0137361_115794861 | 3300012362 | Vadose Zone Soil | PTDSHYTFDRLTDPEDIARQGPLSPSPNVRHGNTGDTGDYPAEEVAQMARLLAVKAITNP |
Ga0126375_102759823 | 3300012948 | Tropical Forest Soil | DYTFHRLADAEDIARCGPLSRSPTVGHGDTGDTGDYPSEEVAQMAHSLAVKAITNP* |
Ga0126375_110302031 | 3300012948 | Tropical Forest Soil | FGRLADPADIARYGPLSQSPNVRHGNTGDTGDYPPEEVAQMAHSLAVKAITTP* |
Ga0126369_122970212 | 3300012971 | Tropical Forest Soil | ADPEDIARHGPLSQSPNVRHAKTGDTDIYPPEEVAQMAHTLAVKAITTP* |
Ga0126369_126169542 | 3300012971 | Tropical Forest Soil | PEDIARYGPLSQSPNAREGKTRDTGIYPSDEVARMAHTLAVKAVTTT* |
Ga0126369_131892011 | 3300012971 | Tropical Forest Soil | RLADPEDIARHGPLSRSPNARHTKTGDTGDYPSEEVAQMAHTLAVKAVTSP* |
Ga0182036_104343611 | 3300016270 | Soil | VRLHRQRSRKLCDVIFKPSNSEYNFGRLADPADIARYGPLSQSPNVRHGNTGDYPPEEVAQMAHSLAVKAITTP |
Ga0182036_113672261 | 3300016270 | Soil | IFKPSNSDYYFGRLVDPEDIARFGPLSSPNLRYRDTGDYPSEEVAQMAHSLAVKAITNP |
Ga0182041_111836902 | 3300016294 | Soil | VSVIFKPSNSDYYFGRLVDPEDIARFGPLSSPNLRYRDTGDYPSEEVAQMAHSLAVKAITNP |
Ga0182035_116639951 | 3300016341 | Soil | FGRLADPEDIARHGPLSRSPNARHTKTGDTGDYPSEEVAQMAHTLAVKAVTTP |
Ga0182035_119667252 | 3300016341 | Soil | RLADPEDIARYGPLSRSPNVSQGKAGETGTYPSDEVAHMAYALAVKAITTT |
Ga0182034_106397212 | 3300016371 | Soil | VSVIFKPSNSDYYFGRLVDPEDIARFGPLSSPNLRYRDTGDYPSEEVAQMARSLAVKAITNP |
Ga0182034_107034912 | 3300016371 | Soil | VSVIFKPSNSDYYFGRLVDPEDIARFGPLSSPNLRYQDTGDTGDYPSEEVAQMAHSLAVKAITNP |
Ga0182040_100203331 | 3300016387 | Soil | SHYSFGRLADPEDIARYGPLSQSPNVREGKTGDTVIYPSDEVARMAHTLAVKAVTTT |
Ga0182038_102808204 | 3300016445 | Soil | VIFKPSNSDYYFGRLADPEDIARFGPLSSPNVRHGNAGDTGDYPSEEVAQMAHSLAVKAITNP |
Ga0182038_105148941 | 3300016445 | Soil | SHVNVIFKPSNSDYYFGRLADPEDIARFGPLSSPNVRHANTGDTGDYPSEEVAQMAHSLAVKAITNP |
Ga0066667_113310631 | 3300018433 | Grasslands Soil | VSVYFKPSDSHSNISRLADPEDIGRYGQISRSLNVRHGKTGDTGEYPESEVAQMAHTLAVKAVTTT |
Ga0190274_119887321 | 3300018476 | Soil | EDIARYGPLSRSPNMRHGKTGDTGEYQPEEVAQMAHSLAVKAITSSW |
Ga0126371_135086322 | 3300021560 | Tropical Forest Soil | DSYYSFGRLADPEDIARHGPLSRSPNARHTKTGDTGDYPSEEVAQMAHTLAVKAVTSP |
Ga0179591_10368262 | 3300024347 | Vadose Zone Soil | YTFHRLADAEDIARCGPLSRSPNVGHGDAGDTGDYPSEEVAQMAHSLAVKAITNP |
Ga0209240_12092551 | 3300026304 | Grasslands Soil | VSVTFKPSNSDYNFGRLADPGDIARYGPLSQSPNVRHGNTGDTGDYPPEEVAQMAHSLAVKAITTP |
Ga0209157_11295531 | 3300026537 | Soil | VSVICKPSDSHYNFGRLADPEDIARYGPLSRSSNVRHGKTGDTGEYPENEVAQMAYTLAVKAVTTT |
Ga0209156_104675731 | 3300026547 | Soil | KPTDSDYNFGRLADPEDIARYGPLSRSPNVRHGNTGDTGDYPAEEVAQMAHSLAVKAVTS |
Ga0209466_10214702 | 3300027646 | Tropical Forest Soil | MTGVVRVDADISDYNFGRLADPKDIARYGPLSQSPNVRHAKTGDTGDYPSEEVAQMAHSLAVKAITNP |
Ga0209701_102590412 | 3300027862 | Vadose Zone Soil | FKPSDSYYNFGRLTDPEDVARYGPLSRSPNVRHAKTGDIDAYPPEEVAQMAHSLAVKAITSP |
Ga0209465_100900132 | 3300027874 | Tropical Forest Soil | HYSFGRLADPEDIARYGPLSQSPNAREGKTRDTGIYPSDEVARMAHTLAVKAVTTT |
Ga0318541_100636944 | 3300031545 | Soil | VIFKPSNSEYNFGRLADPADIARYGPLSQSPNVRHGNTGDYPPEEVAQMAHSLAVKAITT |
Ga0318541_102624654 | 3300031545 | Soil | RNSDYNFVRLANPEDIARYGPLSQSPNVRHGNTTGDYPSEEVARMAHLLAVKAITSP |
Ga0318555_106708432 | 3300031640 | Soil | VIFKPSNSEYNFGRLADPADIARYGPLSQSPNVRHGNTGDYPPEEVAQMAH |
Ga0318561_105888631 | 3300031679 | Soil | GRLVDPEDIARFGPLSSPNLRYRDTGDYPSEEVAQMARSLAVKAITNP |
Ga0306917_102885551 | 3300031719 | Soil | INETADPVRLHRQRSRKLCDVIFKPSNSEYNFGRLADPADIARYGPLSQSPNVRHGNTGDYPPEEVAQMAHSLAVKAITTP |
Ga0306917_105378362 | 3300031719 | Soil | VRLANPEDIARYGPLSQSPNVRHGNTTGDYPSEEVARMAHLLAVKAITSP |
Ga0306917_115372671 | 3300031719 | Soil | LVDPEDIARFGPLSSPNLRYRDTGDTGDYPSEEVAQMAHSLAVKAITNP |
Ga0318493_104791321 | 3300031723 | Soil | SRKLCDVIFKPSNSEYNFGRLADPADIARYGPLSQSPNVRHGNTGDYPPEEVAQMAHSLAVKAITTP |
Ga0318500_104266281 | 3300031724 | Soil | NFVRLADPGDIARYGPLSQSPNVRHGNTGDTGDYPPEEVAQIAHSLAVKAITTP |
Ga0318502_106466982 | 3300031747 | Soil | NSEYNFGRLADPADIARYGPLSQSPNVRHGNTGDYPPEEVAQMAHSLAVKAITTP |
Ga0318502_109010381 | 3300031747 | Soil | SVTFKPSNSDYNFGRLADPKDIARYGPLSQSPNVRHGNTGDTGDYSPEEVAQMAHSLAVEAITTP |
Ga0318494_107735941 | 3300031751 | Soil | VSVIFKPSDSHYSFGRLADPEDIARYGPLSQSPNVRDGKTGDTGIYPSDEVARMAHTLAVKAVTTT |
Ga0318547_103554022 | 3300031781 | Soil | RKLCDVIFKPSNSEYNFGRLADPADIARYGPLSQSPNVRHGNTGDYPPEEVAQMAHSLAVKAITTP |
Ga0318576_105928221 | 3300031796 | Soil | YTFHRLADAEDIARYGPLSRSPNVGHGDSGDTSDYPSEEVAQMAHSLAVKAITNS |
Ga0318550_101896211 | 3300031797 | Soil | NFVRLADPGDIARYGPLSQSPNVRHGNTGDTGDYPPEEVAQMAHSLAVKAITTP |
Ga0318550_105452581 | 3300031797 | Soil | FKPSDSHYSFGRLADPEDIARYGPLSQSPNVREGKTGDTVIYPSDEVARMAHTLAVKAVTTT |
Ga0318523_102871701 | 3300031798 | Soil | INRGREINETADPVRLHRQRSRKLCDVIFKPSNSEYNFGRLADPADIARYGPLSQSPNVRHGNTGDYPPEEVAQMAHSLAVKAITTP |
Ga0318568_104523173 | 3300031819 | Soil | VIFKPSNSEYNFGRLADPADIARYGPLSQSPNVRHGNTGDYPPEEVAQMAHSLAVKAI |
Ga0318567_105426172 | 3300031821 | Soil | SHVSVIFKPSNSDYYFGRLVDPEDIARFGPLSSPNLRYRDTGDTGDYPSEEVAQMAHSLAVKAITNP |
Ga0310917_101046361 | 3300031833 | Soil | DPVRLHRQRSRKLCDVIFKPSNSEYNFGRLADPADIARYGPLSQSPNVRHGNTGDYPPEEVAQMAHSLAVKAITTP |
Ga0306919_103774641 | 3300031879 | Soil | VSVIFKPRNSDYNFVRLANPEDIARYGPLSQSPNVRHGNTTGDYPSEEVARMAHLLAVK |
Ga0306919_105795312 | 3300031879 | Soil | HVSVIFKPSNSDYYFGRLVDPEDIARFGPLSSPNLRYRDTGDTGDYPSEEVAQMAHSLAVKAITNP |
Ga0306923_105085631 | 3300031910 | Soil | PSNSDYYFGRLVDPEDIARFGPLSSPNLRYRDTGDYPSEEVAQMARSLAVKAITNP |
Ga0310916_106224461 | 3300031942 | Soil | SHYSFGRLADPEDIARYGPLLQSPNVRHGNTGGHGDYPPDEVAQMAHSLAVKAITTP |
Ga0306926_113191053 | 3300031954 | Soil | SNSDYYFGRLVDPEDIARFGPLSSPNLRYQDTGDTGDYPSEEVAQMAHSLAVKAITNP |
Ga0318530_103394731 | 3300031959 | Soil | RLADPEDIARYGPLSQSLNVREGKTGDTGIYPSDEVARMAHTLAVKAVTTT |
Ga0318531_103465323 | 3300031981 | Soil | SDSYYSFGRLADPEDIARHGPLSRSPNARHTKTGDTGDYPSGEVAQMAHTLAVKAVTGP |
Ga0318569_105907341 | 3300032010 | Soil | VNVIFKPSNSDYYFGRLADPEDIARFGPLSSPNVRHGNAGDTGDYPSEEVAQMAHSLAVKAITNP |
Ga0310911_102911902 | 3300032035 | Soil | AEDIARYGPLSRSPNVGHGDSGDTSDYPSEEVAQMAHSLAVKAITNS |
Ga0318545_101400111 | 3300032042 | Soil | IFKPSNSEYNFGRLADPADIARYGPLSQSPNVRHGNTGDYPPEEVAQMAHSLAVKAITTP |
Ga0318558_106877871 | 3300032044 | Soil | VIFKPSNSDYYFGRLVDPEDIARFGPLSSPNLRYRDTGDTGDYPSEEVAQMAHSLAVKAITNP |
Ga0318533_105548651 | 3300032059 | Soil | FKPSNTDYTFHRLADAEDIARYGPLSRSPNVGHGDSGDTSDYPSEEVAQMAHSLAVKAITNP |
Ga0318553_101410043 | 3300032068 | Soil | SNSDYYFGRLVDPEDIARFGPLSSPNLRYRDTGDYPSEEVAQMARSLAVKAITNP |
Ga0306920_1007515531 | 3300032261 | Soil | SVIFKPSNSDYYFGRLVDPEDIARFGPLSSPNLRYRDTGDYPSEEVAQMARSLAVKAITN |
Ga0310914_107913022 | 3300033289 | Soil | VIFKPSNSDYYFGRLVDPEDIARFGPLSSPNLRYRDTGDYPSEEVAQMARSLAVKAITNP |
⦗Top⦘ |