NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F102736

Metagenome / Metatranscriptome Family F102736

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F102736
Family Type Metagenome / Metatranscriptome
Number of Sequences 101
Average Sequence Length 43 residues
Representative Sequence ALGASGTLTQMDESNMPRIIEALKETARRISRQLQRSGAAGAA
Number of Associated Samples 88
Number of Associated Scaffolds 101

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 1.98 %
% of genes near scaffold ends (potentially truncated) 94.06 %
% of genes from short scaffolds (< 2000 bps) 91.09 %
Associated GOLD sequencing projects 79
AlphaFold2 3D model prediction Yes
3D model pTM-score0.45

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (100.000 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(29.703 % of family members)
Environment Ontology (ENVO) Unclassified
(29.703 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(59.406 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Fibrous Signal Peptide: No Secondary Structure distribution: α-helix: 38.03%    β-sheet: 0.00%    Coil/Unstructured: 61.97%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.45
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 101 Family Scaffolds
PF04972BON 83.17
PF03009GDPD 9.90
PF09339HTH_IclR 1.98
PF03572Peptidase_S41 0.99
PF00398RrnaAD 0.99
PF01614IclR 0.99
PF00857Isochorismatase 0.99

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 101 Family Scaffolds
COG0584Glycerophosphoryl diester phosphodiesteraseLipid transport and metabolism [I] 9.90
COG003016S rRNA A1518 and A1519 N6-dimethyltransferase RsmA/KsgA/DIM1 (may also have DNA glycosylase/AP lyase activity)Translation, ribosomal structure and biogenesis [J] 0.99
COG0793C-terminal processing protease CtpA/Prc, contains a PDZ domainPosttranslational modification, protein turnover, chaperones [O] 0.99
COG1335Nicotinamidase-related amidaseCoenzyme transport and metabolism [H] 0.99
COG1414DNA-binding transcriptional regulator, IclR familyTranscription [K] 0.99
COG1535Isochorismate hydrolaseSecondary metabolites biosynthesis, transport and catabolism [Q] 0.99

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms100.00 %
UnclassifiedrootN/A0.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001593|JGI12635J15846_10573810All Organisms → cellular organisms → Bacteria → Acidobacteria658Open in IMG/M
3300002562|JGI25382J37095_10086022All Organisms → cellular organisms → Bacteria1146Open in IMG/M
3300002914|JGI25617J43924_10047578All Organisms → cellular organisms → Bacteria1558Open in IMG/M
3300002914|JGI25617J43924_10263099All Organisms → cellular organisms → Bacteria586Open in IMG/M
3300004091|Ga0062387_101126433All Organisms → cellular organisms → Bacteria610Open in IMG/M
3300004092|Ga0062389_103767739All Organisms → cellular organisms → Bacteria → Acidobacteria569Open in IMG/M
3300004635|Ga0062388_100361606All Organisms → cellular organisms → Bacteria1243Open in IMG/M
3300005177|Ga0066690_10149886All Organisms → cellular organisms → Bacteria1532Open in IMG/M
3300005180|Ga0066685_10782013All Organisms → cellular organisms → Bacteria648Open in IMG/M
3300005181|Ga0066678_10131186All Organisms → cellular organisms → Bacteria1550Open in IMG/M
3300005332|Ga0066388_101211087All Organisms → cellular organisms → Bacteria1292Open in IMG/M
3300005542|Ga0070732_10583907All Organisms → cellular organisms → Bacteria678Open in IMG/M
3300005558|Ga0066698_10665255All Organisms → cellular organisms → Bacteria → Acidobacteria692Open in IMG/M
3300005568|Ga0066703_10881236All Organisms → cellular organisms → Bacteria510Open in IMG/M
3300005598|Ga0066706_10619774All Organisms → cellular organisms → Bacteria859Open in IMG/M
3300005602|Ga0070762_10977658All Organisms → cellular organisms → Bacteria580Open in IMG/M
3300006041|Ga0075023_100194394All Organisms → cellular organisms → Bacteria → Acidobacteria778Open in IMG/M
3300006059|Ga0075017_101659934All Organisms → cellular organisms → Bacteria → Acidobacteria505Open in IMG/M
3300006854|Ga0075425_100243744All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2068Open in IMG/M
3300007265|Ga0099794_10150969All Organisms → cellular organisms → Bacteria1179Open in IMG/M
3300009012|Ga0066710_101349161All Organisms → cellular organisms → Bacteria1106Open in IMG/M
3300009038|Ga0099829_11173156All Organisms → cellular organisms → Bacteria → Acidobacteria636Open in IMG/M
3300009038|Ga0099829_11182143All Organisms → cellular organisms → Bacteria → Acidobacteria633Open in IMG/M
3300009038|Ga0099829_11347169All Organisms → cellular organisms → Bacteria → Acidobacteria590Open in IMG/M
3300009089|Ga0099828_10528797All Organisms → cellular organisms → Bacteria1063Open in IMG/M
3300010303|Ga0134082_10531591All Organisms → cellular organisms → Bacteria → Acidobacteria516Open in IMG/M
3300010325|Ga0134064_10441687All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium528Open in IMG/M
3300010343|Ga0074044_10875579All Organisms → cellular organisms → Bacteria → Acidobacteria587Open in IMG/M
3300010360|Ga0126372_10246756All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1529Open in IMG/M
3300010398|Ga0126383_10479585All Organisms → cellular organisms → Bacteria1299Open in IMG/M
3300010858|Ga0126345_1135846All Organisms → cellular organisms → Bacteria → Acidobacteria864Open in IMG/M
3300011120|Ga0150983_11282742All Organisms → cellular organisms → Bacteria → Acidobacteria622Open in IMG/M
3300011120|Ga0150983_16583996All Organisms → cellular organisms → Bacteria → Acidobacteria781Open in IMG/M
3300011270|Ga0137391_11236368All Organisms → cellular organisms → Bacteria → Acidobacteria594Open in IMG/M
3300012198|Ga0137364_10695603All Organisms → cellular organisms → Bacteria → Acidobacteria767Open in IMG/M
3300012202|Ga0137363_11055097All Organisms → cellular organisms → Bacteria → Acidobacteria690Open in IMG/M
3300012208|Ga0137376_10262014All Organisms → cellular organisms → Bacteria1500Open in IMG/M
3300012211|Ga0137377_11498863All Organisms → cellular organisms → Bacteria → Acidobacteria601Open in IMG/M
3300012351|Ga0137386_10866556All Organisms → cellular organisms → Bacteria → Acidobacteria648Open in IMG/M
3300012361|Ga0137360_10550893All Organisms → cellular organisms → Bacteria985Open in IMG/M
3300012362|Ga0137361_11810937All Organisms → cellular organisms → Bacteria → Acidobacteria528Open in IMG/M
3300012363|Ga0137390_10412145All Organisms → cellular organisms → Bacteria1329Open in IMG/M
3300012363|Ga0137390_11467819All Organisms → cellular organisms → Bacteria → Acidobacteria624Open in IMG/M
3300012685|Ga0137397_10168111All Organisms → cellular organisms → Bacteria1627Open in IMG/M
3300012685|Ga0137397_11084288All Organisms → cellular organisms → Bacteria → Acidobacteria584Open in IMG/M
3300012918|Ga0137396_10324981All Organisms → cellular organisms → Bacteria1138Open in IMG/M
3300012918|Ga0137396_10918573All Organisms → cellular organisms → Bacteria → Acidobacteria640Open in IMG/M
3300012922|Ga0137394_11176407All Organisms → cellular organisms → Bacteria → Acidobacteria631Open in IMG/M
3300012925|Ga0137419_11499615All Organisms → cellular organisms → Bacteria → Acidobacteria571Open in IMG/M
3300012929|Ga0137404_11714701All Organisms → cellular organisms → Bacteria → Acidobacteria583Open in IMG/M
3300012929|Ga0137404_11757201All Organisms → cellular organisms → Bacteria → Acidobacteria576Open in IMG/M
3300012930|Ga0137407_11909533All Organisms → cellular organisms → Bacteria → Acidobacteria566Open in IMG/M
3300012977|Ga0134087_10002294All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae5701Open in IMG/M
3300012986|Ga0164304_11378012All Organisms → cellular organisms → Bacteria → Acidobacteria578Open in IMG/M
3300014166|Ga0134079_10159848All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium916Open in IMG/M
3300015054|Ga0137420_1344458All Organisms → cellular organisms → Bacteria2658Open in IMG/M
3300017659|Ga0134083_10206031All Organisms → cellular organisms → Bacteria → Acidobacteria813Open in IMG/M
3300018012|Ga0187810_10371562All Organisms → cellular organisms → Bacteria → Acidobacteria598Open in IMG/M
3300018060|Ga0187765_10655749All Organisms → cellular organisms → Bacteria → Acidobacteria684Open in IMG/M
3300019789|Ga0137408_1124871All Organisms → cellular organisms → Bacteria2838Open in IMG/M
3300019789|Ga0137408_1401643All Organisms → cellular organisms → Bacteria3624Open in IMG/M
3300020199|Ga0179592_10262686All Organisms → cellular organisms → Bacteria → Acidobacteria773Open in IMG/M
3300020580|Ga0210403_11251636All Organisms → cellular organisms → Bacteria → Acidobacteria569Open in IMG/M
3300020581|Ga0210399_10030918All Organisms → cellular organisms → Bacteria4275Open in IMG/M
3300020581|Ga0210399_11450502All Organisms → cellular organisms → Bacteria → Acidobacteria534Open in IMG/M
3300021046|Ga0215015_10571296All Organisms → cellular organisms → Bacteria1654Open in IMG/M
3300021088|Ga0210404_10070911All Organisms → cellular organisms → Bacteria1693Open in IMG/M
3300021168|Ga0210406_11040998All Organisms → cellular organisms → Bacteria → Acidobacteria606Open in IMG/M
3300021178|Ga0210408_10593319All Organisms → cellular organisms → Bacteria → Acidobacteria877Open in IMG/M
3300021181|Ga0210388_11415382All Organisms → cellular organisms → Bacteria583Open in IMG/M
3300021420|Ga0210394_10524300All Organisms → cellular organisms → Bacteria1042Open in IMG/M
3300021559|Ga0210409_10729299All Organisms → cellular organisms → Bacteria → Acidobacteria863Open in IMG/M
3300021560|Ga0126371_10576183All Organisms → cellular organisms → Bacteria1274Open in IMG/M
3300021560|Ga0126371_11316248All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium856Open in IMG/M
3300021560|Ga0126371_13538736All Organisms → cellular organisms → Bacteria → Acidobacteria527Open in IMG/M
3300022721|Ga0242666_1080687All Organisms → cellular organisms → Bacteria → Acidobacteria729Open in IMG/M
3300022726|Ga0242654_10161912All Organisms → cellular organisms → Bacteria → Acidobacteria755Open in IMG/M
3300024178|Ga0247694_1024256All Organisms → cellular organisms → Bacteria → Acidobacteria681Open in IMG/M
3300024287|Ga0247690_1016666All Organisms → cellular organisms → Bacteria → Acidobacteria830Open in IMG/M
3300024330|Ga0137417_1209915All Organisms → cellular organisms → Bacteria → Acidobacteria1170Open in IMG/M
3300026304|Ga0209240_1130110All Organisms → cellular organisms → Bacteria → Acidobacteria840Open in IMG/M
3300026313|Ga0209761_1022361All Organisms → cellular organisms → Bacteria3932Open in IMG/M
3300026314|Ga0209268_1137102All Organisms → cellular organisms → Bacteria → Acidobacteria604Open in IMG/M
3300026335|Ga0209804_1320284All Organisms → cellular organisms → Bacteria → Acidobacteria523Open in IMG/M
3300026361|Ga0257176_1036377All Organisms → cellular organisms → Bacteria → Acidobacteria754Open in IMG/M
3300026523|Ga0209808_1264445All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium549Open in IMG/M
3300026532|Ga0209160_1007574All Organisms → cellular organisms → Bacteria → Acidobacteria8294Open in IMG/M
3300026551|Ga0209648_10341604All Organisms → cellular organisms → Bacteria1037Open in IMG/M
3300026557|Ga0179587_10708072All Organisms → cellular organisms → Bacteria → Acidobacteria663Open in IMG/M
3300027591|Ga0209733_1076840All Organisms → cellular organisms → Bacteria → Acidobacteria861Open in IMG/M
3300027842|Ga0209580_10497121All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium607Open in IMG/M
3300027884|Ga0209275_10640445All Organisms → cellular organisms → Bacteria → Acidobacteria611Open in IMG/M
3300027910|Ga0209583_10100167All Organisms → cellular organisms → Bacteria → Acidobacteria1115Open in IMG/M
3300028138|Ga0247684_1004319All Organisms → cellular organisms → Bacteria2234Open in IMG/M
3300029636|Ga0222749_10762637All Organisms → cellular organisms → Bacteria → Acidobacteria529Open in IMG/M
3300031231|Ga0170824_103983016All Organisms → cellular organisms → Bacteria → Acidobacteria528Open in IMG/M
3300031231|Ga0170824_117905771All Organisms → cellular organisms → Bacteria1328Open in IMG/M
3300031421|Ga0308194_10101508All Organisms → cellular organisms → Bacteria → Acidobacteria828Open in IMG/M
3300031820|Ga0307473_10934204All Organisms → cellular organisms → Bacteria → Acidobacteria629Open in IMG/M
3300031962|Ga0307479_11926912All Organisms → cellular organisms → Bacteria → Acidobacteria541Open in IMG/M
3300033547|Ga0316212_1015914All Organisms → cellular organisms → Bacteria1062Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil29.70%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil15.84%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil9.90%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil6.93%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil4.95%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil4.95%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil3.96%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil2.97%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds2.97%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil2.97%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil1.98%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil1.98%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil1.98%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil1.98%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment0.99%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland0.99%
Bog Forest SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil0.99%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil0.99%
RootsHost-Associated → Plants → Roots → Unclassified → Unclassified → Roots0.99%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere0.99%
Boreal Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil0.99%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001593Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2EnvironmentalOpen in IMG/M
3300002562Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cmEnvironmentalOpen in IMG/M
3300002914Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cmEnvironmentalOpen in IMG/M
3300004091Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3EnvironmentalOpen in IMG/M
3300004092Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3EnvironmentalOpen in IMG/M
3300004635Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3EnvironmentalOpen in IMG/M
3300005177Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139EnvironmentalOpen in IMG/M
3300005180Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134EnvironmentalOpen in IMG/M
3300005181Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127EnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005542Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1EnvironmentalOpen in IMG/M
3300005558Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147EnvironmentalOpen in IMG/M
3300005568Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152EnvironmentalOpen in IMG/M
3300005598Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155EnvironmentalOpen in IMG/M
3300005602Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2EnvironmentalOpen in IMG/M
3300006041Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014EnvironmentalOpen in IMG/M
3300006059Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012EnvironmentalOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300007265Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1EnvironmentalOpen in IMG/M
3300009012Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159EnvironmentalOpen in IMG/M
3300009038Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaGEnvironmentalOpen in IMG/M
3300009089Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaGEnvironmentalOpen in IMG/M
3300010303Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015EnvironmentalOpen in IMG/M
3300010325Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_0_1 metaGEnvironmentalOpen in IMG/M
3300010343Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1EnvironmentalOpen in IMG/M
3300010360Tropical forest soil microbial communities from Panama - MetaG Plot_6EnvironmentalOpen in IMG/M
3300010398Tropical forest soil microbial communities from Panama - MetaG Plot_35EnvironmentalOpen in IMG/M
3300010858Boreal forest soil eukaryotic communities from Alaska, USA - C3-2 Metatranscriptome (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300011120Combined assembly of Microbial Forest Soil metaTEnvironmentalOpen in IMG/M
3300011270Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaGEnvironmentalOpen in IMG/M
3300012198Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012202Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaGEnvironmentalOpen in IMG/M
3300012208Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012211Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012351Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaGEnvironmentalOpen in IMG/M
3300012361Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaGEnvironmentalOpen in IMG/M
3300012362Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaGEnvironmentalOpen in IMG/M
3300012363Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaGEnvironmentalOpen in IMG/M
3300012685Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaGEnvironmentalOpen in IMG/M
3300012918Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaGEnvironmentalOpen in IMG/M
3300012922Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaGEnvironmentalOpen in IMG/M
3300012925Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012929Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012930Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012977Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300012986Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MGEnvironmentalOpen in IMG/M
3300014166Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09182015EnvironmentalOpen in IMG/M
3300015054Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300017659Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300018012Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_5EnvironmentalOpen in IMG/M
3300018060Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MGEnvironmentalOpen in IMG/M
3300019789Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300020199Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300020580Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-MEnvironmentalOpen in IMG/M
3300020581Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-MEnvironmentalOpen in IMG/M
3300021046Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depthEnvironmentalOpen in IMG/M
3300021088Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-MEnvironmentalOpen in IMG/M
3300021168Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-MEnvironmentalOpen in IMG/M
3300021178Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-MEnvironmentalOpen in IMG/M
3300021181Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-OEnvironmentalOpen in IMG/M
3300021420Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-MEnvironmentalOpen in IMG/M
3300021559Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-MEnvironmentalOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300022721Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022726Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300024178Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK35EnvironmentalOpen in IMG/M
3300024287Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK31EnvironmentalOpen in IMG/M
3300024330Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300026304Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)EnvironmentalOpen in IMG/M
3300026313Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm (SPAdes)EnvironmentalOpen in IMG/M
3300026314Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143 (SPAdes)EnvironmentalOpen in IMG/M
3300026335Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139 (SPAdes)EnvironmentalOpen in IMG/M
3300026361Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-03-BEnvironmentalOpen in IMG/M
3300026523Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157 (SPAdes)EnvironmentalOpen in IMG/M
3300026532Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153 (SPAdes)EnvironmentalOpen in IMG/M
3300026551Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)EnvironmentalOpen in IMG/M
3300026557Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungalEnvironmentalOpen in IMG/M
3300027591Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027842Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027884Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)EnvironmentalOpen in IMG/M
3300027910Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)EnvironmentalOpen in IMG/M
3300028138Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK25EnvironmentalOpen in IMG/M
3300029636Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031231Coassembly Site 11 (all samples) - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031421Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_195 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031820Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515EnvironmentalOpen in IMG/M
3300031962Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515EnvironmentalOpen in IMG/M
3300033547Spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRE1Host-AssociatedOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12635J15846_1057381023300001593Forest SoilTQMDEADMPRIVEALKETARRVSRQLLRGGTSGAA*
JGI25382J37095_1008602223300002562Grasslands SoilMGNVTAALGASGTLTQTDEDSVPRIIEALKETARRISRQMQKSGVTGAA*
JGI25617J43924_1004757833300002914Grasslands SoilIFDAIGNVAAALGASGTLTQTDQSNTPRIIESLKETARRISRQLQKRRATGAA*
JGI25617J43924_1026309923300002914Grasslands SoilMGNVTAALGASGTLTQTDEANMPRIIEALKETARRISRQLQKGAATGTA*
Ga0062387_10112643313300004091Bog Forest SoilGGNVAAALGVSGTLTQTDENNMPRIVDALKDAARKISRQTIKAGALGA*
Ga0062389_10376773913300004092Bog Forest SoilGVSGTLTQTDENNMPRIVDALKDAARKISRQTIKAGALGA*
Ga0062388_10036160633300004635Bog Forest SoilGSVTAALGVSGTLTQMDEENMVKIVDALKETARRISRELLRGGATY*
Ga0066690_1014988633300005177SoilVTGNVVAALGASGTLTQVDQASMPRIAEALKETARRITRQLHRRGAAGAA*
Ga0066685_1078201323300005180SoilDTEGNVTAALGASGTLTQTDEVNMPRIIEALKETARRISRQLQKSGATGAA*
Ga0066678_1013118633300005181SoilGNVTAALGASGTLTQMDEDGMPRIIDALKETARRISRQLQRSGSAGAA*
Ga0066388_10121108713300005332Tropical Forest SoilVVAALGASGTLTQVEEASMPRLAESVKETARRISRQLHRSGAAGAA*
Ga0070732_1058390723300005542Surface SoilDVTGNVVAALGASGTLTQVDEASMPRLAEAVKETARRISRQLQRSGAAGAA*
Ga0066698_1066525513300005558SoilGTLTQMEEAQLVRIVEAVKEATRRISRQLVRTGAAGPA*
Ga0066703_1088123613300005568SoilTGNAAAALGASGTLTQVDEPSMPRIVEALKDTARRISRQLQRTGAAGVA*
Ga0066706_1061977413300005598SoilEGNVTAALGASGTLTQTDEVNMPRIIEALKETARRISRQLQKSGATGAA*
Ga0070762_1097765823300005602SoilLGVSGTLTQVDEENLPKIVEVLKETARRISRQLARSGAAGAA*
Ga0075023_10019439413300006041WatershedsTLTQMDEANLPRILEALKETARRVARQLQRSGGAIPA*
Ga0075017_10165993423300006059WatershedsASGTLTQMDEASMPRVIEALKDTARRISRQLQRSGTAGPA*
Ga0075425_10024374443300006854Populus RhizosphereTLTQVDEASVPRLAEAVKETARRITRQLHRTGAAGAA*
Ga0099794_1015096933300007265Vadose Zone SoilGASGTLTQMDEANMPRIIEALKETARRISRQLQKSGATGTA*
Ga0066710_10134916113300009012Grasslands SoilALGASGTLTQTDEVNMPRIIEALKETARRISRQLQKSGATGAA
Ga0099829_1117315613300009038Vadose Zone SoilSGTLTQMEEANLPRILEALKETARRVARQMQRSGATAPA*
Ga0099829_1118214313300009038Vadose Zone SoilAALGVSGTLTQMEEANLPRILEALKETARRVARQMQRSGALAPA*
Ga0099829_1134716923300009038Vadose Zone SoilSGTLTQMDESNMPRIIEALKETARRISRQLQRSGAAGAA*
Ga0099828_1052879733300009089Vadose Zone SoilFDTLGNVTAALGASGTLTQTDEASMPRIIEALKETARRISRQIQKSGLTGAA*
Ga0134082_1053159113300010303Grasslands SoilTLTQMDENGMPRIIDALKETARRISRQLQRSGSAGAA*
Ga0134064_1044168713300010325Grasslands SoilNVVAALGASGTLTQVDEASVPRLTEAVKETARRISRQLQRSGATGAA*
Ga0074044_1087557913300010343Bog Forest SoilVSGTLTQTDENNIARIIDALKDAARRISRQTIKSGALGAIWATKS*
Ga0126372_1024675623300010360Tropical Forest SoilVVAALSASGTLTQVDQASMPRIAEALKETPRRISRQLQRSSGVGAS*
Ga0126383_1047958533300010398Tropical Forest SoilASGTLTQVDEASMPRLADAVKETARRISRQFQRSGSAGAT*
Ga0126345_113584623300010858Boreal Forest SoilVSGTLTQMEEANLPRILEALKETARRVSRQMQRSGALAPP*
Ga0150983_1128274223300011120Forest SoilGVSGTLTQVDEENLSRIAEALKENARRISRQLIKSGASGAA*
Ga0150983_1658399623300011120Forest SoilGTLTQGDEENLPKIVEAWKETALRISRQLTRSGAAGVA*
Ga0137391_1123636813300011270Vadose Zone SoilALGASGTLTQMDESNMPRIIEALKETARRISRQLQRSGAAGAA*
Ga0137364_1069560313300012198Vadose Zone SoilLGASGTLTQMDEDSMPRIIDALKETARRISRQLQRSGSAGAA*
Ga0137363_1105509723300012202Vadose Zone SoilTAALGASGTLTQMDESNMPRIIEALKETARRISRQLQRSGAAGAA*
Ga0137376_1026201433300012208Vadose Zone SoilASGTLTQTDEANMPRIIEALKETARRISRQLQKSGATGAA*
Ga0137377_1149886313300012211Vadose Zone SoilMGNVTAALGASGTLTQTDEASMPRIIEALKETARRISRQMQKGGGTGAA*
Ga0137386_1086655623300012351Vadose Zone SoilGASGTLTQMDEDSMPRIIDALKETARRISRQLQRSGSAGAA*
Ga0137360_1055089333300012361Vadose Zone SoilQMDESSMPKIIEALKETARRVSRQLLRSGAAGAA*
Ga0137361_1181093723300012362Vadose Zone SoilGTLTQTDEVDMPRIIDALKETARRISRQLQKSGTTGTA*
Ga0137390_1041214513300012363Vadose Zone SoilTLTQMDESNMPRIIEALKETARRISRQLQRSGAAGAA*
Ga0137390_1146781923300012363Vadose Zone SoilLGASGTLTQTDEANMPRIIEALKETARRISRQLQKSGATGTA*
Ga0137397_1016811113300012685Vadose Zone SoilIGASGTLTQMDEPNMPKMIEALKETARRVSRQLLRSGASGAA*
Ga0137397_1108428823300012685Vadose Zone SoilTQMDEPNMPKMIEALKETARRVSRQLLHSGAAGAA*
Ga0137396_1032498113300012918Vadose Zone SoilAALGASGTLTQMGEDSMPRIIDALKETARRISRQLQRSGSAGAA*
Ga0137396_1091857313300012918Vadose Zone SoilMGNVTAALGASGTLTQTDEAEMPRIIDAIKETARRISRQIQKSGVTGAA*
Ga0137394_1117640723300012922Vadose Zone SoilDAAGNVTAAIGASGTLTQMDEASMPRMIEALKETARRVSRQLLHSGAAGAA*
Ga0137419_1149961513300012925Vadose Zone SoilTMGNVTAALGASGTLTQTDEANMPRIIEALKETARRISRQLQKSGATGAA*
Ga0137404_1171470113300012929Vadose Zone SoilTGNVAAALGASGTLTQTDETDTPRIIEALKDTARRISRQLQRSGATGAA*
Ga0137404_1175720113300012929Vadose Zone SoilATIGASRTLTQMDESSMPKSIEPLKETARRVSRQLLRSGAAGAA*
Ga0137407_1190953323300012930Vadose Zone SoilQMDESSMPKIIEALKETARRASRQLLRSGAAGAA*
Ga0134087_1000229473300012977Grasslands SoilVAALGASGTLTQVDQASMPRIAEALKETARRITRQLHRRGAAGAA*
Ga0164304_1137801223300012986SoilTAALGVSGTLKQVDEENLPKIADALKEPARRISRQLLRSGAAGAA*
Ga0134079_1015984823300014166Grasslands SoilALGASGTLTQVDEASLPRLTEAVKETARRISRQLQRSGATGAA*
Ga0137420_134445843300015054Vadose Zone SoilLTQTDEASMPRIIEALKETARRISRQMQKGGVTGAA*
Ga0134083_1020603123300017659Grasslands SoilTAALGASGTLTQMDEDNMPRIIDALKETARRISRQLQRSGTAGAA
Ga0187810_1037156223300018012Freshwater SedimentASGTLTQMDEVNMPRVIEHLKDAARRISRQLQRMGTAGAA
Ga0187765_1065574913300018060Tropical PeatlandGTVVAALGASGTLTQVDEHSMPRLAEALKETARRISRQLQRSNMPAAG
Ga0137408_112487143300019789Vadose Zone SoilGTLTQTDEADMPRIIEALKETARRISRQLQRSGETGAA
Ga0137408_140164363300019789Vadose Zone SoilTLTQTDEADMPRIIEALKETARRISRQLQRSGETGAA
Ga0179592_1026268613300020199Vadose Zone SoilTIFDNMGNVAAALGASGTLTQTDESNMPRIIDALKETARRISRQLQKGGAIGAA
Ga0210403_1125163623300020580SoilLGVSGTLTQVDEENLPKIVEALQETARRISRHLTRSGVAGAA
Ga0210399_1003091863300020581SoilAAAALGASGTLTQTDEANMPRIIDALKETARRISRQLQKGGAAGAA
Ga0210399_1145050213300020581SoilFDNLGNVAAALGASGTLTQTDEANMPRIIDALKDAARRMTRQLQRGGATGAA
Ga0215015_1057129613300021046SoilLTQVDEPSMPRIIEALKDTARRISRQLQRTGAAGVA
Ga0210404_1007091133300021088SoilFDTMGNVTAALGASGTLTEMDEANMPRIIEALKESSRRISRQLQKSAATGAA
Ga0210406_1104099813300021168SoilVSGTLTQADEENLPKIVEALKETARRISRQLMRGGAAGAA
Ga0210408_1059331923300021178SoilSGTLTQTDEANMPRIIDALKETARRISRQLQKGGAAGAA
Ga0210388_1141538213300021181SoilSGTLTQMDAAKMPRVAEALKETARRVSRQLLKTGAA
Ga0210394_1052430013300021420SoilASGTLTQTDEANMPRIIEALKETARRISRQLQKSGATGAA
Ga0210409_1072929913300021559SoilASGTLTETDEANMPRIIEALKESARRISRQLQKSGATGAA
Ga0126371_1057618313300021560Tropical Forest SoilGNVVAALGASGTLTQVDEASMPRIAEAVKEAARRISRQLHRSGATGAA
Ga0126371_1131624823300021560Tropical Forest SoilLTQVDEASLPRLAESVKETARRISRQLHRSGAAGAA
Ga0126371_1353873623300021560Tropical Forest SoilVVAALGASGTLTQVDEASMPRLADAVKETARRISRQFQRSGSAGAM
Ga0242666_108068723300022721SoilGVSGTLTQVDEENLPKIVEALKETARRISRQLTRSGAAGVA
Ga0242654_1016191213300022726SoilVTAALGVSGTLTQADEENLPKIVEALKETARRISRQLTRSGAVGAA
Ga0247694_102425623300024178SoilGNVTAALGVSGTLTQVDEENLPKIADALKETARRISRQLLRSGAAGAA
Ga0247690_101666613300024287SoilGVSGTLTQVDEENLPKIADALKETARRISRQLLRSGAAGAA
Ga0137417_120991523300024330Vadose Zone SoilMGNVTAALGASGTLTQTDEANMPRIIEALKESARRISRQLQKSGATGAA
Ga0209240_113011013300026304Grasslands SoilGASGTLTQTDEESMPRIIEALKETARRISRQMQKGGLTGAA
Ga0209761_102236113300026313Grasslands SoilALGASGTLTQTDEDSVPRIIEALKETARRISRQMQKSGVTGAV
Ga0209268_113710223300026314SoilAALGASGTLTQTDQTNMPRIIEALKETARRISRQLYKGGLPGAA
Ga0209804_132028423300026335SoilTQMDENGMPRIIDALKETARRISRQLQRSGSAGAA
Ga0257176_103637713300026361SoilTAALGASGTLTQTDEANMPRIIEALKESARRISRQLQKSGATGAA
Ga0209808_126444513300026523SoilLGASGTLTQMDEDNMPRIIDALKETARRISRQLQRSGTAGAVRAGRRPG
Ga0209160_100757453300026532SoilVTAAIGASGTLTQMDESSMPKIIEALKETARRVSRQLLRSGAAGAA
Ga0209648_1034160433300026551Grasslands SoilGASGTLTQTDEANMPRIIEALKESARRISRQLQKSGATGAA
Ga0179587_1070807213300026557Vadose Zone SoilAAIAALGVSGTLTQMDEANLPRILEALKETGRRVARQIQRGGALALG
Ga0209733_107684013300027591Forest SoilTLTQTDEANMPRIIEALKETARRISRQLQKSGTTGAA
Ga0209580_1049712123300027842Surface SoilDVTGNVVAALGASGTLTQVDEASMPRLAEAVKETARRISRQLQRSGAAGAA
Ga0209275_1064044513300027884SoilLGVSGTLTQVDEENLPKIVEVLKETARRISRQLARSGAAGAA
Ga0209583_1010016733300027910WatershedsGTLTQMDEANLPRILEALKETARRVARQLQRIGGAIPA
Ga0247684_100431943300028138SoilLTQVDEENLPKIVDALKETARRISRQLMRSGAAGAA
Ga0222749_1076263713300029636SoilNVTAALGASGTLTQTDEANTPRIIEALKETARRISRQLQKSGATGAA
Ga0170824_10398301613300031231Forest SoilQGNVTAALGASGTLTQTDEASMPRIIDALKETARRVSRQLQRSGTTGAA
Ga0170824_11790577133300031231Forest SoilGNVTAALGASGTLTQTDEASMPRIIEALKETARRISRQMQKGGVTGAA
Ga0308194_1010150833300031421SoilGNVTAALGASGTLTQTDDANMPRIIEALKETARRISRQLQKSGATGAAQ
Ga0307473_1093420423300031820Hardwood Forest SoilSMGNVTAALGASGTLTQTEEADMPRISDALKETARRISRQLQRAGVLGAA
Ga0307479_1192691213300031962Hardwood Forest SoilVSGTLTQMDEESMVKIVDALKETARRISRQLSRAGQT
Ga0316212_101591413300033547RootsGVSGTLTQTDENNMARIVEALKDAARKISRQTIKAGALGI

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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