Metagenome / Metatranscriptome Family F102712

Overview

Basic Information

• Family ID: F102712
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 101
• Average Sequence Length: 70 residues
• Representative Sequence: MLQPSEVDIQIEVAVLKNRLDHIDESIHGIRDQIEEVEQRVMRLERTTYMLLGGLILLQALPLIQDFLSI
• Number of Associated Samples: 52
• Number of Associated Scaffolds: 101

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Unclassified
• % of genes with valid RBS motifs: 49.50 %
• % of genes near scaffold ends (potentially truncated): 30.69 %
• % of genes from short scaffolds (< 2000 bps): 85.15 %
• Associated GOLD sequencing projects: 48
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.51

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Unclassified (67.327 % of family members)
• NCBI Taxonomy ID: N/A
• Taxonomy: N/A

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater (62.376 % of family members)
• Environment Ontology (ENVO): Unclassified (87.129 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline) (95.050 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Transmembrane (alpha-helical)
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 67.35%
  β-sheet: 0.00%
  Coil/Unstructured: 32.65%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF00011	HSP20	30.69
PF12705	PDDEXK_1	1.98
PF06941	NT5C	0.99
PF01165	Ribosomal_S21	0.99
PF13640	2OG-FeII_Oxy_3	0.99

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	30.69
COG0828	Ribosomal protein S21	Translation, ribosomal structure and biogenesis [J]	0.99
COG4502	5'(3')-deoxyribonucleotidase	Nucleotide transport and metabolism [F]	0.99

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.33 %
All Organisms	root	All Organisms	32.67 %

Level 2

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.33 %
Viruses	superkingdom	All Organisms → Viruses	28.71 %
cellular organisms	root	All Organisms → cellular organisms	3.96 %

Level 3

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.33 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	28.71 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	3.96 %

Level 4

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.33 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	28.71 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	1.98 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.99 %

Level 5

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.33 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	28.71 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	1.98 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.99 %

Level 6

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.33 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	28.71 %
Ignavibacteriae	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae	1.98 %
Phycisphaerae	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae	0.99 %

Level 7

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.33 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	28.71 %
Ignavibacteria	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria	1.98 %
unclassified Phycisphaerae	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae	0.99 %

Level 8

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.33 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	28.71 %
Ignavibacteria	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria	1.98 %
Phycisphaerae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	0.99 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300004279|Ga0066605_10235828	Not Available	690
3300006868|Ga0075481_10261912	Not Available	608
3300006916|Ga0070750_10243190	Not Available	783
3300006916|Ga0070750_10449507	Not Available	533
3300006919|Ga0070746_10089742	All Organisms → Viruses → Predicted Viral	1544
3300006919|Ga0070746_10473751	Not Available	553
3300006922|Ga0098045_1160418	Not Available	514
3300007538|Ga0099851_1236865	Not Available	656
3300007539|Ga0099849_1029583	All Organisms → Viruses → Predicted Viral	2348
3300007539|Ga0099849_1289748	Not Available	593
3300007647|Ga0102855_1106939	Not Available	750
3300007992|Ga0105748_10452353	Not Available	558
3300008012|Ga0075480_10372031	Not Available	710
3300008012|Ga0075480_10385343	Not Available	693
3300008993|Ga0104258_1057611	Not Available	726
3300009058|Ga0102854_1032052	All Organisms → Viruses → Predicted Viral	1516
3300009495|Ga0115571_1156857	Not Available	951
3300010300|Ga0129351_1154721	Not Available	903
3300017719|Ga0181390_1005589	All Organisms → Viruses → Predicted Viral	4725
3300017719|Ga0181390_1045356	All Organisms → Viruses → Predicted Viral	1310
3300017719|Ga0181390_1090404	Not Available	832
3300017719|Ga0181390_1147367	Not Available	595
3300017726|Ga0181381_1010570	All Organisms → Viruses → Predicted Viral	2169
3300017726|Ga0181381_1034302	Not Available	1133
3300017727|Ga0181401_1045900	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria	1209
3300017727|Ga0181401_1074047	Not Available	895
3300017727|Ga0181401_1093335	Not Available	771
3300017727|Ga0181401_1107108	Not Available	707
3300017728|Ga0181419_1035755	All Organisms → Viruses → Predicted Viral	1337
3300017728|Ga0181419_1094212	Not Available	741
3300017728|Ga0181419_1128029	Not Available	616
3300017729|Ga0181396_1026077	All Organisms → Viruses → Predicted Viral	1163
3300017734|Ga0187222_1004410	All Organisms → Viruses → Predicted Viral	3732
3300017734|Ga0187222_1074526	Not Available	776
3300017735|Ga0181431_1143223	Not Available	531
3300017735|Ga0181431_1159277	Not Available	501
3300017742|Ga0181399_1006746	All Organisms → Viruses → Predicted Viral	3495
3300017742|Ga0181399_1042591	Not Available	1203
3300017742|Ga0181399_1045732	Not Available	1153
3300017742|Ga0181399_1095218	Not Available	740
3300017742|Ga0181399_1121899	Not Available	638
3300017749|Ga0181392_1042279	All Organisms → Viruses → Predicted Viral	1411
3300017749|Ga0181392_1093689	Not Available	900
3300017750|Ga0181405_1063219	Not Available	962
3300017751|Ga0187219_1080540	All Organisms → Viruses → Predicted Viral	1018
3300017751|Ga0187219_1121734	Not Available	773
3300017751|Ga0187219_1138244	Not Available	709
3300017751|Ga0187219_1162303	Not Available	637
3300017751|Ga0187219_1179391	Not Available	595
3300017751|Ga0187219_1232200	Not Available	501
3300017752|Ga0181400_1051096	All Organisms → Viruses → Predicted Viral	1281
3300017752|Ga0181400_1052009	Not Available	1267
3300017752|Ga0181400_1058474	Not Available	1181
3300017752|Ga0181400_1069970	Not Available	1060
3300017752|Ga0181400_1143705	Not Available	679
3300017753|Ga0181407_1006261	All Organisms → Viruses → Predicted Viral	3494
3300017753|Ga0181407_1109170	Not Available	693
3300017753|Ga0181407_1158945	Not Available	556
3300017753|Ga0181407_1176564	Not Available	522
3300017756|Ga0181382_1057759	All Organisms → Viruses → Predicted Viral	1106
3300017757|Ga0181420_1036648	All Organisms → Viruses → Predicted Viral	1598
3300017762|Ga0181422_1011532	All Organisms → Viruses → Predicted Viral	2940
3300017762|Ga0181422_1022851	All Organisms → Viruses → Predicted Viral	2048
3300017762|Ga0181422_1186349	Not Available	629
3300017762|Ga0181422_1271107	Not Available	500
3300017764|Ga0181385_1006999	All Organisms → Viruses → Predicted Viral	3729
3300017764|Ga0181385_1008361	All Organisms → Viruses → Predicted Viral	3375
3300017764|Ga0181385_1029850	All Organisms → Viruses → Predicted Viral	1727
3300017764|Ga0181385_1050146	All Organisms → Viruses → Predicted Viral	1300
3300017764|Ga0181385_1123167	Not Available	791
3300017764|Ga0181385_1246149	Not Available	536
3300017770|Ga0187217_1021242	All Organisms → Viruses → Predicted Viral	2325
3300017770|Ga0187217_1287541	Not Available	531
3300017772|Ga0181430_1016162	All Organisms → Viruses → Predicted Viral	2492
3300017772|Ga0181430_1022803	All Organisms → Viruses → Predicted Viral	2048
3300017772|Ga0181430_1049670	All Organisms → cellular organisms → Bacteria	1304
3300017772|Ga0181430_1088871	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria	927
3300017776|Ga0181394_1163557	Not Available	687
3300017776|Ga0181394_1251160	Not Available	529
3300017781|Ga0181423_1162550	Not Available	857
3300017783|Ga0181379_1202655	Not Available	694
3300018420|Ga0181563_10234866	All Organisms → Viruses → Predicted Viral	1100
3300018428|Ga0181568_11277504	Not Available	549
3300018428|Ga0181568_11446926	Not Available	508
3300021085|Ga0206677_10185415	Not Available	902
3300021185|Ga0206682_10009291	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	7121
3300021335|Ga0213867_1083205	All Organisms → Viruses → Predicted Viral	1168
3300021373|Ga0213865_10284554	Not Available	777
3300021379|Ga0213864_10597727	Not Available	546
3300021957|Ga0222717_10134979	All Organisms → Viruses → Predicted Viral	1516
(restricted) 3300023109|Ga0233432_10340876	Not Available	677
(restricted) 3300023109|Ga0233432_10494795	Not Available	513
(restricted) 3300024255|Ga0233438_10096351	Not Available	1361
(restricted) 3300024264|Ga0233444_10199059	Not Available	927
(restricted) 3300024264|Ga0233444_10363889	Not Available	607
3300024292|Ga0228630_1090408	Not Available	640
3300025674|Ga0208162_1128148	Not Available	720
3300025849|Ga0209603_1011123	Not Available	6371
3300025870|Ga0209666_1284363	Not Available	662
3300028008|Ga0228674_1074343	All Organisms → Viruses → Predicted Viral	1228
3300028008|Ga0228674_1174304	Not Available	704

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Category

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	100.00%

Type

Habitat	Taxonomy	Distribution
Strait	Environmental → Aquatic → Marine → Strait	62.38%
Coastal	Environmental → Aquatic → Marine → Coastal	18.81%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	7.92%
Inlet	Environmental → Aquatic → Marine → Inlet	4.95%
Oceanic	Environmental → Aquatic → Marine → Oceanic	1.98%
Unclassified	Environmental → Aquatic → Marine → Unclassified	1.98%
Pelagic	Environmental → Aquatic → Marine → Pelagic	1.98%

Subtype

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	62.38%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	18.81%
Unclassified	Environmental → Aquatic → Marine → Inlet → Unclassified	4.95%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	2.97%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	2.97%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	1.98%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	1.98%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	1.98%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	1.98%

Habitat

Habitat	Taxonomy	Distribution
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	62.38%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	10.89%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	5.94%
Seawater	Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater	4.95%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	2.97%
Seawater	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater	1.98%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	1.98%
Pelagic Marine	Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine	1.98%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	0.99%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	0.99%
Estuary Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water	0.99%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	0.99%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	0.99%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	0.99%
Ocean Water	Environmental → Aquatic → Marine → Oceanic → Unclassified → Ocean Water	0.99%

Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OID	Sample Name	Habitat Type
3300004279	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_10m	Environmental
3300006868	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_>0.8_DNA	Environmental
3300006916	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24	Environmental
3300006919	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21	Environmental
3300006922	Marine viral communities from the Subarctic Pacific Ocean - 11_ETSP_OMZ_AT15265 metaG	Environmental
3300007538	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG	Environmental
3300007539	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG	Environmental
3300007647	Estuarine microbial communities from the Columbia River estuary - metaG 1370B-02	Environmental
3300007992	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1461AB_0.2um	Environmental
3300008012	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_<0.8_DNA	Environmental
3300008993	Marine microbial communities from eastern North Pacific Ocean - P1 free-living	Environmental
3300009058	Estuarine microbial communities from the Columbia River estuary - metaG 1370A-02	Environmental
3300009495	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531	Environmental
3300010300	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.2_DNA	Environmental
3300017719	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 13 SPOT_SRF_2010-07-21	Environmental
3300017726	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 4 SPOT_SRF_2009-09-24	Environmental
3300017727	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 24 SPOT_SRF_2011-07-20	Environmental
3300017728	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 42 SPOT_SRF_2013-04-24	Environmental
3300017729	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 19 SPOT_SRF_2011-01-11	Environmental
3300017734	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 4 SPOT_SRF_2009-09-24 (version 2)	Environmental
3300017735	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 54 SPOT_SRF_2014-05-21	Environmental
3300017742	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 22 SPOT_SRF_2011-05-21	Environmental
3300017749	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 15 SPOT_SRF_2010-09-15	Environmental
3300017750	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 28 SPOT_SRF_2011-11-29	Environmental
3300017751	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 13 SPOT_SRF_2010-07-21 (version 2)	Environmental
3300017752	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 23 SPOT_SRF_2011-06-22	Environmental
3300017753	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 30 SPOT_SRF_2012-01-26	Environmental
3300017756	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 5 SPOT_SRF_2009-10-22	Environmental
3300017757	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 43 SPOT_SRF_2013-05-22	Environmental
3300017762	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 45 SPOT_SRF_2013-07-18	Environmental
3300017764	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 8 SPOT_SRF_2010-02-11	Environmental
3300017770	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 15 SPOT_SRF_2010-09-15 (version 2)	Environmental
3300017772	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 53 SPOT_SRF_2014-04-10	Environmental
3300017776	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 17 SPOT_SRF_2010-11-23	Environmental
3300017781	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 46 SPOT_SRF_2013-08-14	Environmental
3300017783	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 2 SPOT_SRF_2009-07-10	Environmental
3300018420	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011512CT metaG (megahit assembly)	Environmental
3300018428	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101404AT metaG (megahit assembly)	Environmental
3300021085	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015	Environmental
3300021185	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 40m 12015	Environmental
3300021335	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540	Environmental
3300021373	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282	Environmental
3300021379	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO247	Environmental
3300021957	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D	Environmental
3300023109 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_10_MG	Environmental
3300024255 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_10_MG	Environmental
3300024264 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_124_October2016_10_MG	Environmental
3300024292	Seawater microbial communities from Monterey Bay, California, United States - 37D	Environmental
3300025674	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG (SPAdes)	Environmental
3300025849	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120607 (SPAdes)	Environmental
3300025870	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_125m_DNA (SPAdes)	Environmental
3300028008	Seawater microbial communities from Monterey Bay, California, United States - 1D_r	Environmental

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0066605_102358281	3300004279	Marine	MLQPSDVDIQIEVAVLKNRLDHIDESIHNVRDQIEEVEQRVMRIERTTYMLLGALVLIQLLPVLEGALSTLSP*
Ga0075481_102619121	3300006868	Aqueous	RHGTLSVMLQPSEVDIQIEVAVLKNRLDHIDESIHGIRDQIEEVEQRVMRLERTTYMLLGGLILLQAMPMIQDFLSL*
Ga0070750_102431902	3300006916	Aqueous	MLLKTNPMLQPSEVDIQIEVAVVKNRLDHIDESIHGIRDQLEEVEQRVMRLERTTYMLLGGLILLQAMPMIQDVLGSM*
Ga0070750_104495071	3300006916	Aqueous	MLQPSEVDIQIEVAVLKNRLDHIDESIHGIRDQIEEVEQRVMRLERTTYMLLGGLILLQALPLIQDFLGI*
Ga0070746_100897422	3300006919	Aqueous	MLQPSEVDIQIEVAVVKNRLDHIDESIHGIRDQIEEVEQRVMRLERTTYMLLGGLLILQMIPMIQDFLSL*
Ga0070746_104737512	3300006919	Aqueous	MYQETQPMLQPSEVDIQIEVAVLKNRLDHIDESIHGIRDQIEEVEARVMRLERTTYMLLGGLILLQAMPMIQDFLSL*
Ga0098045_11604182	3300006922	Marine	SEVDIQIEVAVLKNRLDHIDESIHGIRDQIEEVEQRVMRLERTTYMLLGGLIFLQALPLVQEYLSL*
Ga0099851_12368652	3300007538	Aqueous	MLQPSEVDIQIEVAVLKNRLDHIDESIHGIRDQIEEVEQRVMRLERTTYMLLGGLILLQALPLIQDFLSI*
Ga0099849_10295831	3300007539	Aqueous	MLQPSEVDIQIEVAVLKNRLDHIDESIHGIRDQIEEVEQRVMRLERTTYMLLGGLIFLQALPMIAEFLSL
Ga0099849_12897481	3300007539	Aqueous	LSLMLQPSEVDIQIEVAVLKNRLDHIDESIHGIRSQIEEVEQRVMRLERTTYMLLGGLILLQAMPMLQDWLSL*
Ga0102855_11069392	3300007647	Estuarine	MLQPSDVDIQIEVAVLKNRLDHIDESIHNVRDQIEEVEQRVMRIERTTYMLLGGLILLQVWPTLQGMFNTV*
Ga0105748_104523531	3300007992	Estuary Water	MLQPSDVDIQIEVAVLKNRLDHIDESIHNVRDQIEEVEQRVMRIERTTYMLLGGLVLLQVWPSIQSYLG*
Ga0075480_103720313	3300008012	Aqueous	MYQETQPMLQPSDVDIMIEVAVVKNRLDHIDESIHGIRDQIEEVEARVMRLERTTYMLLGGLILLQALPLIQDFLSI*
Ga0075480_103853433	3300008012	Aqueous	ALSLMLQPSEVDIQIEVAVLKNRLDHIDESIHGIRDQIEEVEQRVMRLERTTYMLLGGLILLQAMPMIQDFLSL*
Ga0104258_10576111	3300008993	Ocean Water	MLQPSEVDIQIEVAVLKNRLDHIDESIHNVRDQIEEVEQRVMRLERTTYMLLGGLILLQVWPSLQGMLGTL*
Ga0102854_10320524	3300009058	Estuarine	MLQPSEVDIQIEVAVLKNRLDHIDESIHSVRDQIEEVENRVMRLERVTYMLLGGLLLLQAYPLIVSTLSTI*
Ga0115571_11568572	3300009495	Pelagic Marine	MPESKVEIEVAVLQTKMDHIEESMHALKEQVEQIEVRVMRIEKVTYMLLGGLVFLQMVPLIQSLLVTA*
Ga0129351_11547212	3300010300	Freshwater To Marine Saline Gradient	MLQPSEVDIQIEVAVLKNRLDHIDESIHGIRDQIEEVEQRVMRLERTTYMLLGGLILLQFLPMIQDWVS*
Ga0181390_10055892	3300017719	Seawater	MLQPSEVDIQIEVAVLKNRLDHIDESIHNVRDQIEEVEQRVMRLERTTYMLLGGLILIQVWPSLQGMLGTL
Ga0181390_10453562	3300017719	Seawater	VIQPSEVDIQIEVAVLKNRLDHIDESIHGIRDQIEDMEVRVMRIEKVTYMLFGGLVFLQMVPLIQSLIVTA
Ga0181390_10904042	3300017719	Seawater	MPESKVEIEVAVLQTKMDHIEESVHELKDQVEQVEVRVMRIEKVTYMLLGGLVFLQMVPLVRDLLTAV
Ga0181390_11473672	3300017719	Seawater	MLQPQEIDIQIEVAVLKTRLDNIDESIRNGTKQVEEVEQRVMRLERTTYMLLGGLILLQAMPILSEMLSQYS
Ga0181381_10105701	3300017726	Seawater	EVDIQIEVAVLKNRLDHIDESIHGIREQIEEVEQRVMRLERTTYMLLGGLILLQAMPFIQEMFSTLPS
Ga0181381_10343022	3300017726	Seawater	MLQPSEVDIQIEVAVVKNRLDHLDEHLSNIREQIEEVEQRVMRLERTTYMLLGGLILIQVWPSLQGMFGTL
Ga0181401_10459003	3300017727	Seawater	MLQPSEVDIQIEVAVLKNRLDHIDESIHGIRDQIEEVEQRVMRLERTTYMLLGGLILLQVWPSLQGMLNTL
Ga0181401_10740474	3300017727	Seawater	LKNRLDHIDESIHNVRDQIEEVEQRVMRIERTTYMLLGGLVIIQLLPSITTMLSTLSP
Ga0181401_10933352	3300017727	Seawater	MLQPSDVDIQIEVAVLKNRLDHIDESIHNVRDQIEEVEQRVMRIERTTYMLLGGLILLQVWPTLQGMFNTV
Ga0181401_11071081	3300017727	Seawater	MLQPSEVDIQIEVAVLKNRLDHIDESIHGIRDQIEEVEQRVMRLERTTYMLLGGLILL
Ga0181419_10357552	3300017728	Seawater	MLQPTDVDIQIEVAVLKNRLDHIDESIHNVRDQIEEVEQRVMRIERTTYMLLGGLVILQFLPLISEVLESLS
Ga0181419_10942122	3300017728	Seawater	MIRVYSMLQPSEVDIQIEVAVLKNRLDHIDESIHNVRDQIEEVEQRVMRLERTTYMLLGGLILIQVWPSLQGMLGTL
Ga0181419_11280291	3300017728	Seawater	MPESKVEIEVAVLQTKMDHIEESMHELKDQVEQVEVRVMRIEKVTYMLLGGLVFLQMVPLVRDLLTAV
Ga0181396_10260771	3300017729	Seawater	MLQPTDVDIQIEVAVLKNRLDHIDESIHNVRDQIEEVEQRVMRIERTTYMLLGGLIILQFLPLISEVLESLS
Ga0187222_10044102	3300017734	Seawater	MLQPTEVDIQIEVAVLKNRLDHIDESIHGIREQIEEVEQRVMRLERTTYMLLGGLILLQAMPFIQEFLSL
Ga0187222_10745261	3300017734	Seawater	IEVAVLKTRLDNIDESIRNGTKQVEEVEQRVMRLERTTYMLLGGLILLQAMPILSEILSQYS
Ga0181431_11432231	3300017735	Seawater	MPQPSDVDIQIEVAVLKNRLDHIDESIHNVRDQIEEVEQRVMRIERTTYMLLGGLILLQVWPTLQGMFNTV
Ga0181431_11592772	3300017735	Seawater	VIQPSEVDIQIEVAVLKNRLDHIDESIHGIRDQIEDMEVRVMRIEKVTYMLLGGLVFLQMVPLIQGLLATA
Ga0181399_10067463	3300017742	Seawater	MLQPQEIDIQIEVAVLKTRLDNIDESIRNGTKQVEEVEQRVMRLERTTYMLLGGLILLQGMPILSEILSQYS
Ga0181399_10425912	3300017742	Seawater	MLQPADVDIQIEVAVLKNRLDHIDESIHNVRDQIEEVEQRVMRIERTTYMLLGGLILLQVWPTLQGMFNTV
Ga0181399_10457322	3300017742	Seawater	VIQPSEVDIQIEVAVLKNRLDHIDESIHGIRDQIEDMEVRVMRIEKVTYMLLGGLVFLQMVPLIQSLIATA
Ga0181399_10952181	3300017742	Seawater	SDVDIQIEVAVLKNRLDHIDESIHDVQDQIEEVEQRVMRIERTTYMLLGGLVIIQFLPTVTTMLSSVSP
Ga0181399_11218991	3300017742	Seawater	MLQPSEVDIQIEVAVLKNRLDHIDESIHGIRNQIEEVEQRVMRLERTTYMLLGGLILLQVWPSLQGMLNTL
Ga0181392_10422793	3300017749	Seawater	MLQPSDVDIQIEVAVLKNRLDHIDESIHNVRDQIEEVEQRVMRIERTTYMLLGGLVIIQLLPSITTMLSTLSP
Ga0181392_10936892	3300017749	Seawater	MLQPSEVDIQIEVAVLKNRLDHIDESIRDVRDQIEQAESRLMRLERTTYMLLGGLILLQVWPSLQGMLNTL
Ga0181405_10632192	3300017750	Seawater	MLQPSDVDIQIEVAVLKNRLDHIDQSIHGIRDQIEEVEQRVMRLERTTYMLLGGLILLQVWPSVQGMLSL
Ga0187219_10805402	3300017751	Seawater	MLQPSDVDIQIEVAVLKNRLDHIDESIHNVRDQIEEVEQRVMRIERTTYMLLGALVLIQLPPVLEGALSTLSP
Ga0187219_11217341	3300017751	Seawater	MPDSKVEIEVAVLQTKMDHIEESMHELKDQVEQVEVRVMRIEKVTYMLLGGLVFLQMVPLVRDLLTAV
Ga0187219_11382441	3300017751	Seawater	DIQIEVAVLKNRLDHIDESIHNVRDQIEEVEQRVMRLERTTYMLLGGLILIQVWPSLQGMLGTL
Ga0187219_11623031	3300017751	Seawater	DIQIEVAVLKNRLDHIDESIHNVRDQIEEVEQRVMRLERTTYMLLGGLILLQAMPMIQDFLGTV
Ga0187219_11793911	3300017751	Seawater	MLQPSEVDIQIEVAVLKNRLDHIDESIHNVRDQIEEVEQRVMRLERTTYMLLGGLILLQVWPSLQGMLGTL
Ga0187219_12322001	3300017751	Seawater	MLQPSDVDIQIEVAVLKNRLDHIDESIHNVRDQIEEVEQRVMRIERTTYMLLGGLVILQFLPLISEVLESLS
Ga0181400_10510961	3300017752	Seawater	MLQPSEVDIQIEVAVLKNRLDHIDESIHSVRDQIEEVENRVMRLERVTYMLLGGLLLLQAYPLIVSTLSTI
Ga0181400_10520092	3300017752	Seawater	MPQPSDVDIQIEVAVLKNRLDHIDESIHNVRDQIEEVEQRVMRIERTTYMLLGGLVIIQLLPSITTMLSTLSP
Ga0181400_10584743	3300017752	Seawater	AVLKTRLDNIDESIRNGTKQVEEVEQRVMRLERTTYMLLGGLILLQGMPILSEILSQYS
Ga0181400_10699702	3300017752	Seawater	MPDSKVEIEVAVLQTKMDHIEESMHELKDQVEQVEVRVMRIEKVTYMLLGGLVFLQMVPLVRDLLTAI
Ga0181400_11437052	3300017752	Seawater	MLQPQEIDIQIEVAVLKTRLDNIDESIRNGTKQVEEVEQRVMRLERTTYMLLGGLILLQAMPILSEILSQYS
Ga0181407_10062611	3300017753	Seawater	MLQPSDVDIQIEVAVLKNRLDHIDQSIHGIRDQIEEVEQRVMRLERTTYMLLGGLILLQA
Ga0181407_11091702	3300017753	Seawater	MLQPTDVDIQIEVAVLKNRLDHIDESIHNVRDQIEEVEQRVMRIERTTYMLLGGLIILQFLPLISEVFDTIS
Ga0181407_11589451	3300017753	Seawater	MLQPSEVDIQIEVAVLKNRLDHIDESIHSVRDQIEEVEQRVMRIERTTYMLLGGLVIIQLLPSITTMLSTLSP
Ga0181407_11765642	3300017753	Seawater	MIRVSSMLQPSEVDIQIEVAVLKNRLDHIDESIHNVRDQIEEVEQRVMRLERTTYMLLGGLILIQVWPSLQGMLGTL
Ga0181382_10577592	3300017756	Seawater	MLQPTEVDIQIEVAVLKNRLDHIDESIHGIREQIEEVEQRVMRLERTTYMLLGGLILLQAMPFIQDYLAL
Ga0181420_10366482	3300017757	Seawater	MRQPSEVDIQIEVAVLKNRLDHIDESIHGIRDQIEEVEQRVMRLERTTYMLLGGLILLQVWPSLQGMLNTL
Ga0181422_10115326	3300017762	Seawater	MLQPTEVDIQIEVAVLKNRLDHIDESIHGIREQIEEVEQRVMRLERTTYMLLGGLILLQAMPFIQEMFSTLPS
Ga0181422_10228511	3300017762	Seawater	MLQPSEVDIQIEVAVLKNRLDHIDESIDDMKEHLGAVDARVMRIERTVYMLLGGLVLIQALPMLESLFQ
Ga0181422_11863492	3300017762	Seawater	MLQPSDVDIQIEVAVLKNRLDHIDESIHNVRDQIEEVEQRVMRIERTTYMLLGGLIILQFLPLISEVFDTLS
Ga0181422_12711071	3300017762	Seawater	IDIQIEVAVLKTRLDNIDESIRNGTKQVEEVEQRVMRLERTTYMLLGGLILLQAMPILSEILSQYS
Ga0181385_10069998	3300017764	Seawater	MLQPSEVDIQIEVAVLKNRLDHIDESIHGIRDQIEEVEQRVMRLERTTYMLLGGLILLQAMPMLNEFLTSV
Ga0181385_10083611	3300017764	Seawater	QIEVAVLKNRLDHIDESIHGIRDQIEEVEQRVMRLERTTYMLLGGLIFLQALPMIQDFLS
Ga0181385_10298505	3300017764	Seawater	TLAIILGSFPMLQPSEVDIQIEVAVLKNRLDHIDESIHGIRDQIEEVEQRVMRLERTTYMLLGGLILLQAMPMINEFLATV
Ga0181385_10501461	3300017764	Seawater	MLQPSDVDIQIEVAVLKNRLDHIDESIHSVRDQVEEVEQRVMRIERTTYMLLGGLIILQFLPLISEVFDTLS
Ga0181385_11231672	3300017764	Seawater	MYQETHPMLQPSEVDIQIEVAVLKNRLDHIDQSIHGIRDQIEEVEQRVMRLERTTYMLLGGLILLQAMPMIQDFLGSV
Ga0181385_12461491	3300017764	Seawater	RIMLQPSEVDIQIEVAVLKNRLDHIDESIDDMKEHLGAVDARVMRIERTVYMLLGGLVLIQALPMLESLFQ
Ga0187217_10212424	3300017770	Seawater	MLQPTDVDIQIEVAVLKNRLDHIDESIHNVRDQIEEVEQRVMRIERTTYMLLGGLILLQVWPTLQGMFNTV
Ga0187217_12875412	3300017770	Seawater	MPESKVEIEVAVLQTKMDHIEESVHELKDQVEQVEVRVMRIEKVTYMLLGGLVFLQMVPLIRDLLTAV
Ga0181430_10161625	3300017772	Seawater	MLQPSEVDIQIEVAVLKNRLDHIDESIHSVREQIEEVENRVMRLERVTYMLLGGLLLIQALPMFSGLLSSTPTI
Ga0181430_10228035	3300017772	Seawater	MLQPSEVDIQIEVAVLKNRLDHIDESIHSVRDQIEEVEQRVMRIERTTYMLLGGLVLIQALPMLEGALSTLSTI
Ga0181430_10496702	3300017772	Seawater	MIRVYSMLQPSEVDIQIEVAVLKNRLDHIDESIHSVRDQIEEVEQRVMRLERTTYMLLGGLILLQAMPMIQDFLGTV
Ga0181430_10888713	3300017772	Seawater	MLQPSEVDIQIEVAVLKNRLDHIDESIHGIRDQIEEVEQRVMRLERTTYMLLGGLILLQAMPMIQDFLGTV
Ga0181394_11635571	3300017776	Seawater	MLQPSDVDIQIEVAVLKNRLDHIDDALVSVREQIEEVEHRVVRIERTTYMLLGGLVFLQFLPLAQELLSL
Ga0181394_12511602	3300017776	Seawater	MLQPTEVDIQIEVAVVKNRLDHIDESIHGIRDQIEEVEQRVMRLERTTYMLLGGLIL
Ga0181423_11625502	3300017781	Seawater	MLQPSEVDIQIEVAVVKNRLDHLDEHLSNIRDQIEEVEQRVMRLERTTYMLLGGLILLQVWPSVQGMLSL
Ga0181379_12026552	3300017783	Seawater	MLQPQEIDIQIEVAVLKTRLDNIDESIRNGTKQVEEVEQRVMRLERTTYMLLGGLILLQGMPILS
Ga0181563_102348663	3300018420	Salt Marsh	MLQPSEVDIQIEVAVLKNKIDHIDESLHDMKEHLGEVEARVMRIERTVYMLLGGLLLIQFLPMVGDLI
Ga0181568_112775041	3300018428	Salt Marsh	MLQPSEVDIQIEVAVLKNKIDHIDESLHDMKEHLGEVEARVMRIERTVYMLLGGLLLIQFLPMVSDLISTI
Ga0181568_114469261	3300018428	Salt Marsh	MLQPSEVDIQIEVAVLKNRLDHIDESIDDMKEHLSAVDARIMRVERTVYMLLGGLVLIQFLPMASDLIATLG
Ga0206677_101854153	3300021085	Seawater	VIQPSEVDIQIEVAVLKNRLDHIDESIHGIRDQIEDMEVRVMRIEKVTYMLLGGLVFLQMVPLIQGLLVTA
Ga0206682_100092911	3300021185	Seawater	NYRGSPMLQPQEIDIQIEVAVLKTRLDNIDESIRNGTKQVEEVEQRVMRLERTTYMLLGGLILLQGMPILSEILSQYS
Ga0213867_10832052	3300021335	Seawater	MLQPSEVDIQIEVAVVKNRLDHLDDHLHNIREQIEEVEQRVMRLERTTYMLLGGLILLQAMPMIQEFLSL
Ga0213865_102845543	3300021373	Seawater	FPMLQPSEVDIQIEVAVLKNRLDHIDESIHGIRDQIEEVEQRVMRLERTTYMLLGGLIFLQALPMIQDFLSL
Ga0213864_105977272	3300021379	Seawater	MLQPSEVDIQIEVAVLKNRLDHIDESIHGIRGQIEEVEQRVMRLERTTYMLLGGLILLQAMPMIQDFLSL
Ga0222717_101349792	3300021957	Estuarine Water	MLQPTDVDIQIEVAVLKNRLDHIDESIHNVRDQIEEVEQRVMRIERTTYMLLGGLIILQFLPLISEVFDTLS
(restricted) Ga0233432_103408762	3300023109	Seawater	MLQPQEIDIQIEVAVLKNRLDHIDESIHNVRDQIEEVEQRVMRLERTTYMLLGGLILLQAMPILSEILSQYS
(restricted) Ga0233432_104947951	3300023109	Seawater	MLQPSEVDIQIEVAVLKNRLDHIDESVDEMKDHLDRVETRVMRIERTVYMLLGGLVLIQALPMLESLI
(restricted) Ga0233438_100963511	3300024255	Seawater	TLILLHCSQETKMLQPSEVDIQIEVAVLKNRLDHIDESIHGIRDQIDEVEQRVMRIERTTYMLLGGLILLQVWPQIQGMLS
(restricted) Ga0233444_101990594	3300024264	Seawater	QPADVDIQIEVAVLKNRLDHIDESIHNVRDQIGEVEQRVMRIERTTYMLLGALVLIQLLPVLEGALSTLSP
(restricted) Ga0233444_103638892	3300024264	Seawater	VIQPSEVDIQIEVAVLKNRLDHIDESIHGIRAQIEDMEVRVMRIEKVTYMLLGGLVFLQMVPLIQGLLATA
Ga0228630_10904082	3300024292	Seawater	MLQPSEVDIQIEVAVLKNRLDHIDESIHNVRDQIEEVEQRVMRLERTTYMLLGGLIFLQALPMIQEYLSL
Ga0208162_11281481	3300025674	Aqueous	MLQPSEVDIQIEVAVLKNRLDHIDESIHGIRDQIEEVEQRVMRLERTTYMLLGGLILLQALPL
Ga0209603_101112314	3300025849	Pelagic Marine	MPESKVEIEVAVLQTKMDHIEESMHALKEQVEQIEVRVMRIEKVTYMLLGGLVFLQMVPLIQSLLVTA
Ga0209666_12843632	3300025870	Marine	MLQPTDVDIQIEVAVLKNRLDHIDESIHNVRDQIEQAESRLMRIERTTYMLLGGLILLQVWPTLQGMFNTV
Ga0228674_10743432	3300028008	Seawater	MLQPSDVDIQIEVAVLKNRLDHIDESIHNVRDQIEEVEQRVMRIERTTYMLLGGLVILQFLPLISEVFDTLS
Ga0228674_11743042	3300028008	Seawater	MLQPSEVDIQIEVAVLKNRLDHIDESIHSVRDQIEEVEQRVMRIERTTYMLLGALVLI