Metagenome Family F102627

Overview

Basic Information

• Family ID: F102627
• Family Type: Metagenome
• Number of Sequences: 101
• Average Sequence Length: 54 residues
• Representative Sequence: MPKQKKLFTIKNKNNKINMNVDEHLYNHFQSLTPAQQKAIQDLMLLKILQDFND
• Number of Associated Samples: 66
• Number of Associated Scaffolds: 101

Quality Assessment

• Transcriptomic Evidence: No
• Most common taxonomic group: Unclassified
• % of genes with valid RBS motifs: 0.00 %
• % of genes near scaffold ends (potentially truncated): 29.70 %
• % of genes from short scaffolds (< 2000 bps): 87.13 %
• Associated GOLD sequencing projects: 63
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.59

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Unclassified (89.109 % of family members)
• NCBI Taxonomy ID: N/A
• Taxonomy: N/A

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton (27.723 % of family members)
• Environment Ontology (ENVO): Unclassified (67.327 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline) (63.366 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 35.37%
  β-sheet: 18.29%
  Coil/Unstructured: 46.34%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF02675	AdoMet_dc	71.29
PF16778	Phage_tail_APC	0.99

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG1586	S-adenosylmethionine decarboxylase	Amino acid transport and metabolism [E]	71.29

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.11 %
All Organisms	root	All Organisms	10.89 %

Level 2

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.11 %
cellular organisms	root	All Organisms → cellular organisms	10.89 %

Level 3

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.11 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	8.91 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	1.98 %

Level 4

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.11 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	7.92 %
Sar	clade	All Organisms → cellular organisms → Eukaryota → Sar	1.98 %

Level 5

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.11 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	7.92 %
Alveolata	clade	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata	1.98 %

Level 6

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.11 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	7.92 %
Dinophyceae	class	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	1.98 %

Level 7

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.11 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	7.92 %
Suessiales	order	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales	1.98 %

Level 8

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.11 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	7.92 %
Symbiodiniaceae	family	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae	1.98 %

Level 9

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.11 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	7.92 %
Symbiodinium	genus	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	1.98 %

Level 10

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.11 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	7.92 %
unclassified Symbiodinium	no rank	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → unclassified Symbiodinium	1.98 %

Level 11

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.11 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	7.92 %
Symbiodinium sp. KB8	species	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → unclassified Symbiodinium → Symbiodinium sp. KB8	1.98 %

Associated Scaffolds

Scaffold	Taxonomy	Length
2199352003|2199770280	Not Available	537
3300000052|Draft_c103191	Not Available	802
3300002382|B570J29648_105663	Not Available	641
3300003860|Ga0031658_1028200	Not Available	948
3300003860|Ga0031658_1070992	Not Available	613
3300004240|Ga0007787_10470804	Not Available	628
3300005527|Ga0068876_10771038	Not Available	510
3300005528|Ga0068872_10365727	Not Available	790
3300007171|Ga0102977_1103162	All Organisms → cellular organisms → Bacteria → Proteobacteria	2965
3300007177|Ga0102978_1200405	Not Available	2528
3300007559|Ga0102828_1124301	Not Available	637
3300007600|Ga0102920_1069783	Not Available	1107
3300007600|Ga0102920_1074478	Not Available	1071
3300008107|Ga0114340_1141439	Not Available	901
3300008107|Ga0114340_1233877	Not Available	576
3300008108|Ga0114341_10038242	Not Available	3215
3300008108|Ga0114341_10111179	All Organisms → cellular organisms → Bacteria → Proteobacteria	2440
3300008108|Ga0114341_10461714	Not Available	588
3300008108|Ga0114341_10518623	Not Available	534
3300008110|Ga0114343_1210163	Not Available	553
3300008111|Ga0114344_1025486	Not Available	2376
3300008111|Ga0114344_1175563	Not Available	707
3300008111|Ga0114344_1244140	Not Available	524
3300008113|Ga0114346_1091665	Not Available	1411
3300008113|Ga0114346_1236300	Not Available	694
3300008114|Ga0114347_1040537	Not Available	2324
3300008114|Ga0114347_1049505	All Organisms → cellular organisms → Bacteria → Proteobacteria	2255
3300008114|Ga0114347_1111340	Not Available	1040
3300008116|Ga0114350_1082494	Not Available	1599
3300008116|Ga0114350_1101364	Not Available	908
3300008117|Ga0114351_1090372	Not Available	1807
3300008117|Ga0114351_1115337	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → unclassified Symbiodinium → Symbiodinium sp. KB8	1540
3300008117|Ga0114351_1351797	Not Available	661
3300008119|Ga0114354_1249225	Not Available	571
3300008120|Ga0114355_1043251	Not Available	2115
3300008258|Ga0114840_1052845	Not Available	638
3300008259|Ga0114841_1022542	All Organisms → cellular organisms → Bacteria → Proteobacteria	3285
3300008259|Ga0114841_1076078	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → unclassified Symbiodinium → Symbiodinium sp. KB8	1537
3300008259|Ga0114841_1099522	Not Available	1267
3300008261|Ga0114336_1305190	Not Available	598
3300008262|Ga0114337_1195086	Not Available	831
3300008448|Ga0114876_1021615	All Organisms → cellular organisms → Bacteria	3324
3300009068|Ga0114973_10179957	Not Available	1163
3300009152|Ga0114980_10806100	Not Available	522
3300009181|Ga0114969_10281724	Not Available	987
3300010160|Ga0114967_10474140	Not Available	615
3300010160|Ga0114967_10539747	Not Available	566
3300010334|Ga0136644_10423215	Not Available	752
3300010885|Ga0133913_12273980	Not Available	1333
3300012667|Ga0157208_10038857	Not Available	643
3300013004|Ga0164293_10504706	Not Available	798
3300013004|Ga0164293_10569301	Not Available	739
3300013005|Ga0164292_10478370	Not Available	819
3300013014|Ga0164295_11052144	Not Available	632
3300020141|Ga0211732_1508050	Not Available	1224
3300020159|Ga0211734_10716960	Not Available	1204
3300020159|Ga0211734_11273758	Not Available	1311
3300020160|Ga0211733_10045033	Not Available	1865
3300020160|Ga0211733_10680563	Not Available	510
3300020160|Ga0211733_11152481	Not Available	907
3300020162|Ga0211735_10214618	Not Available	2483
3300020493|Ga0208591_1013542	Not Available	1110
3300020495|Ga0208720_1033058	Not Available	556
3300020525|Ga0207938_1043221	Not Available	657
3300020528|Ga0208224_1007993	Not Available	1696
3300020560|Ga0208852_1067909	Not Available	563
3300020561|Ga0207934_1024488	Not Available	1022
3300021108|Ga0214162_1023144	Not Available	1096
3300027754|Ga0209596_1364466	Not Available	553
(restricted) 3300027977|Ga0247834_1216039	Not Available	713
3300031758|Ga0315907_11221749	Not Available	525
3300031758|Ga0315907_11292273	Not Available	504
3300031784|Ga0315899_10710903	All Organisms → cellular organisms → Bacteria → Proteobacteria	932
3300031784|Ga0315899_10889679	Not Available	804
3300031784|Ga0315899_11119990	Not Available	689
3300031784|Ga0315899_11752818	Not Available	508
3300031786|Ga0315908_10796961	Not Available	772
3300031786|Ga0315908_10928477	Not Available	704
3300031786|Ga0315908_11197604	All Organisms → cellular organisms → Bacteria → Proteobacteria	603
3300031786|Ga0315908_11364413	Not Available	557
3300031786|Ga0315908_11514045	Not Available	522
3300031787|Ga0315900_10351259	All Organisms → cellular organisms → Bacteria → Proteobacteria	1190
3300031787|Ga0315900_11083739	Not Available	518
3300032050|Ga0315906_11026150	Not Available	618
3300033984|Ga0334989_0221239	All Organisms → cellular organisms → Bacteria → Proteobacteria	1034
3300033984|Ga0334989_0522663	Not Available	585
3300033993|Ga0334994_0392642	Not Available	673
3300034022|Ga0335005_0602932	Not Available	594
3300034023|Ga0335021_0203106	Not Available	1103
3300034050|Ga0335023_0122678	Not Available	1489
3300034050|Ga0335023_0387173	Not Available	741
3300034050|Ga0335023_0599931	Not Available	559
3300034060|Ga0334983_0761361	Not Available	509
3300034096|Ga0335025_0500191	Not Available	613
3300034107|Ga0335037_0144927	Not Available	1297
3300034107|Ga0335037_0393570	Not Available	749
3300034107|Ga0335037_0659431	Not Available	548
3300034116|Ga0335068_0067135	Not Available	2064
3300034167|Ga0335017_0212943	Not Available	1105
3300034280|Ga0334997_0558139	Not Available	710

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.01%
Engineered	Engineered	0.99%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	99.01%
Biotransformation	Engineered → Biotransformation	0.99%

Category

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	96.04%
Marine	Environmental → Aquatic → Marine	2.97%
Microbial Solubilization Of Coal	Engineered → Biotransformation → Microbial Solubilization Of Coal	0.99%

Type

Habitat	Taxonomy	Distribution
Lake	Environmental → Aquatic → Freshwater → Lake	65.35%
Lentic	Environmental → Aquatic → Freshwater → Lentic	15.84%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	13.86%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	2.97%
Lotic	Environmental → Aquatic → Freshwater → Lotic	0.99%
Unclassified	Engineered → Biotransformation → Microbial Solubilization Of Coal → Unclassified	0.99%

Subtype

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	65.35%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	13.86%
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	8.91%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	4.95%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	2.97%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	1.98%
Unclassified	Environmental → Aquatic → Freshwater → Lotic → Unclassified	0.99%
Unclassified	Engineered → Biotransformation → Microbial Solubilization Of Coal → Unclassified → Unclassified	0.99%

Habitat

Habitat	Taxonomy	Distribution
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	27.72%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	20.79%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	13.86%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	8.91%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	7.92%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	6.93%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	2.97%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	2.97%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	1.98%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	1.98%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	0.99%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	0.99%
Freshwater	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater	0.99%
Hydrocarbon Resource Environments	Engineered → Biotransformation → Microbial Solubilization Of Coal → Unclassified → Unclassified → Hydrocarbon Resource Environments	0.99%

Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OID	Sample Name	Habitat Type
2199352003	Freshwater microbial communities from Lake Mendota, WI - Practice 20APR2010 epilimnion	Environmental
3300000052	Coal bed methane well microbial communities from Alberta, Canada	Engineered
3300002382	Freshwater microbial communities from Lake Mendota, WI - 26OCT2009 deep hole epilimnion	Environmental
3300003860	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - PLP11 PL	Environmental
3300004240	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN	Environmental
3300005527	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG	Environmental
3300005528	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG	Environmental
3300007171	Combined Assembly of cyanobacterial bloom in Marina Bay water reservoir, Singapore (Diel cycle-Surface layer) 8 sequencing projects	Environmental
3300007177	Combined Assembly of cyanobacterial bloom in Marina Bay water reservoir, Singapore (Diel cycle-Surface and Bottom layers) 16 sequencing projects	Environmental
3300007559	Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.541	Environmental
3300007600	Estuarine microbial communities from the Columbia River estuary - metaG 1568A-3	Environmental
3300008107	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA	Environmental
3300008108	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-C-NA	Environmental
3300008110	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-3-NA	Environmental
3300008111	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-C-NA	Environmental
3300008113	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NA	Environmental
3300008114	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-C-NA	Environmental
3300008116	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA	Environmental
3300008117	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-C-NA	Environmental
3300008119	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0110-C-NA	Environmental
3300008120	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-3-NA	Environmental
3300008258	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample HABS-E2014-0110-3-NA	Environmental
3300008259	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0132-C-NA	Environmental
3300008261	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-C-NA	Environmental
3300008262	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-C-NA	Environmental
3300008448	Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigs	Environmental
3300009068	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG	Environmental
3300009152	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG	Environmental
3300009181	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG	Environmental
3300010160	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130628_MF_MetaG	Environmental
3300010334	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_EF_MetaG (v2)	Environmental
3300010885	northern Canada Lakes Co-assembly	Environmental
3300012667	Freshwater microbial communities from Maskinonge River, Ontario, Canada - S15	Environmental
3300013004	Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG	Environmental
3300013005	Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES117 metaG	Environmental
3300013014	Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES006 metaG	Environmental
3300020141	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1	Environmental
3300020159	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1	Environmental
3300020160	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1	Environmental
3300020162	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_201 megahit1	Environmental
3300020493	Freshwater microbial communities from Lake Mendota, WI - 14NOV2009 deep hole epilimnion (SPAdes)	Environmental
3300020495	Freshwater microbial communities from Lake Mendota, WI - 20APR2010 deep hole epilimnion (SPAdes)	Environmental
3300020525	Freshwater microbial communities from Lake Mendota, WI - 05MAR2012 deep hole epilimnion (SPAdes)	Environmental
3300020528	Freshwater microbial communities from Lake Mendota, WI - 26OCT2009 deep hole epilimnion (SPAdes)	Environmental
3300020560	Freshwater microbial communities from Lake Mendota, WI - 18JUN2009 deep hole epilimnion ns (SPAdes)	Environmental
3300020561	Freshwater microbial communities from Lake Mendota, WI - 22APR2009 deep hole epilimnion (SPAdes)	Environmental
3300020573	Freshwater microbial communities from Lake Mendota, WI - 17JUL2012 deep hole epilimnion (SPAdes)	Environmental
3300021108	Freshwater microbial communities from Lake Mendota, WI - Practice 20APR2010 epilimnion	Environmental
3300027754	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)	Environmental
3300027977 (restricted)	Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_12m	Environmental
3300031758	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123	Environmental
3300031784	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA112	Environmental
3300031786	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA124	Environmental
3300031787	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114	Environmental
3300032050	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA122	Environmental
3300033984	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Mar2001-rr0030	Environmental
3300033993	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037	Environmental
3300034022	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Apr2018-rr0058	Environmental
3300034023	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Oct2016-rr0090	Environmental
3300034050	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07May2013-rr0095	Environmental
3300034060	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16May2013-rr0016	Environmental
3300034096	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME15Oct2015-rr0098	Environmental
3300034107	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Apr2017-rr0133	Environmental
3300034116	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-CONTROL-GENDONOR	Environmental
3300034167	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Apr2015-rr0082	Environmental
3300034280	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME10Aug2009-rr0048	Environmental

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
2199921644	2199352003	Freshwater	PKQKKLFSIKNKDNQMNMNVDETLYNHFQSLSPIQQKRIQDLMTLKMLQETNYRA
Draft_1031913	3300000052	Hydrocarbon Resource Environments	IMYINMPKQKKLFTVKTKNNDINMNVDEHLYNHFQTLTPAQQKAIHDLMLLKMLQDFDD*
B570J29648_1056631	3300002382	Freshwater	NLIYINMPKQKKLFSIKNKDNQMNMNVDETLYNHFQSLSPIQQKRIQDLMTLKMLQETNYRA*
Ga0031658_10282001	3300003860	Freshwater Lake Sediment	FIYIKNFNLIYINMPKQKKLFSIKNKDNQMNMNVDETLYNHFQSLSPIQQKRIQDLMTLKMLQETNYRA*
Ga0031658_10709921	3300003860	Freshwater Lake Sediment	MSKQKKLFSIKNNNKKINMNVDESLFNHFQTLTPLQQKAVQDLMTLKLLEQNEQ*
Ga0007787_104708041	3300004240	Freshwater Lake	MPKQKKLFTIKNKNNQMNMNVDEHSYNHFQSLTPAQQKAIHALMI*
Ga0068876_107710381	3300005527	Freshwater Lake	MPKQKKLFTIKNKKNEINMNVDEHLYNHFQSLTPAQQKAIQDLMLLKILQDFND*
Ga0068872_103657273	3300005528	Freshwater Lake	MPKQKTLFTLKNNDQNIDMNVDEALYNHFQSLSPLEKKRIQDLMILKLLQQIYD*
Ga0102977_11031624	3300007171	Freshwater Lake	MPKQKTLFTLKNNDQNIDMNVDEALYNHFQSLSPLEKKRIQDLMILKLLQQMYD*
Ga0102978_12004054	3300007177	Freshwater Lake	MTKQKKLYTVKVYDTNIDMNVDEALYKHFQSLSPLEQKRIQDLMTLKLLQQIKQ*
Ga0102828_11243012	3300007559	Estuarine	MPKQKKLFTIKTKNNDINMNVDEHLYNHFQTLTPAQQKAIHDLMLLKMLQDFDD*
Ga0102920_10697833	3300007600	Estuarine	MPKQKKLFSIKNKDNQMNMNVDETLYNHFQSLSPIQQKRIQDLMTLKMLQETNYRA*
Ga0102920_10744781	3300007600	Estuarine	LFTIKNKNSKINMNVDEHLYNHFQTLTPAQQKAIHDLMLLKMLQDFDD*
Ga0114340_11414393	3300008107	Freshwater, Plankton	YIMYINMPKQKKLFTVKTKNNDINMNVDEHLYNHFQTLTPAQQKAIHDLMLLKMLQDFDD
Ga0114340_12338771	3300008107	Freshwater, Plankton	MTKQKKLFSVKNNDKNIDMNVDEALYKHFQSLTPLEQKRIQDLMTLKLLQQINE*
Ga0114341_100382424	3300008108	Freshwater, Plankton	MPKQKTLFTLKNNDKNIDMNVDEALYNHFQSLSPLEKKRIQDLMTLKLLQQTKQ*
Ga0114341_101111792	3300008108	Freshwater, Plankton	MPKQKKLFTFKTKNNDINMNVDEALFNHFQTLTPLQQKAVQDLMTLKLLQQNYQ*
Ga0114341_104617141	3300008108	Freshwater, Plankton	MPKQKKLFTIKNKNNKINMNVDEHLYNHFQSLTPAQQKAIQDLMLLKILQDFND*
Ga0114341_105186231	3300008108	Freshwater, Plankton	YMPKQKKLFSVKNNDKNIDMNVDEALYKHFQSLTPLEQKRIQDLMTLKLLQQINE*
Ga0114343_12101632	3300008110	Freshwater, Plankton	MPKQKKLFTVKTKNNDINMNVDEALFNHFQTLTPLQQKAVQDLMTLKLLQQNNQ*
Ga0114344_10254864	3300008111	Freshwater, Plankton	LFTLKNNDKNIDMNVDEALYNHFQSLSPLEKKRIQDLMTLKLLQQTKQ*
Ga0114344_11755631	3300008111	Freshwater, Plankton	MPKQKKLFTVKTKNNDINMNVDEHLYNHSQTLTPAQQKAIHDLMLLKILQDS
Ga0114344_12441402	3300008111	Freshwater, Plankton	MPKQKKIFSIKNKNTKINMNVDEHLYNHFQSLTPAQQKSIQDLMLLKILQDFKS*
Ga0114346_10916652	3300008113	Freshwater, Plankton	MTKKKTLFSIKNKQNKINMDVDESLYNHFQTLTPLQQKAVQDLMTLKLLQQNKQ*
Ga0114346_12363001	3300008113	Freshwater, Plankton	MPKQKKLFTLKNNDANIDMNVDEALYNHFQSLSPLEKKRIQDLMTLKLLQQMYD*
Ga0114347_10405375	3300008114	Freshwater, Plankton	MPKKKIFSIKNKNSKINMNVDEHLYNHFQSLTPAQQKSIQDLMLLKILQDFKS*
Ga0114347_10495052	3300008114	Freshwater, Plankton	MPKQKTLFTLKNNDKNIDMNVDIDMNVDEALYNHFQSLSPLEKKRIQDLMTLKLLQQTKQ
Ga0114347_11113401	3300008114	Freshwater, Plankton	MPKQKKLFTVKTKNNDINMNVDEALFNHFQTLTPLQQKAVQDLMTLKLLQQIYQ*
Ga0114350_10824942	3300008116	Freshwater, Plankton	MPKQKKLFTVKTKNNDINMNVDEHLYNHFQTLTPAQQKAIHDLMLLKMLQDFDD*
Ga0114350_11013641	3300008116	Freshwater, Plankton	QKKLFSIKNKNTKINMNVDEHLYNHFQSLTPAQQKSIQDLMLLKILQDFKS*
Ga0114351_10903722	3300008117	Freshwater, Plankton	MPKQKKIFSIKNKNSKINMNVDEHLYNHFQSLTPAQQKSIQDLMLLKILQDFKS*
Ga0114351_11153373	3300008117	Freshwater, Plankton	MPKQKTLFTLKNNDKNIDMNVDEALYNHFQSLSPLEKKRIQDLMILKLLQQIYD*
Ga0114351_13517972	3300008117	Freshwater, Plankton	MYINMPKQKKLFTVKTKNNDINMNVDEHLYNHFQTLTPAQQKAIHDLMLLKMLQDFDD*
Ga0114354_12492251	3300008119	Freshwater, Plankton	MPKQKKLFTIKNKKNKINMNVDEHLYNHFQSLTPAQQKAIQDLMLLKILQDFND*
Ga0114355_10432513	3300008120	Freshwater, Plankton	LIYAQTKEIIYIKNNDKNIDMNVDEALYNHFQSLSPLEKKRIQDLMTLKLLQQTKQ*
Ga0114840_10528451	3300008258	Freshwater, Plankton	YKKFLYIKKFDVMYINMPKQKTLFTVKTKNNDINMNVDEHLYNHFQTLTPAQQKAIHDLMLLKMLQDFDD*
Ga0114841_10225424	3300008259	Freshwater, Plankton	MPKQKTLFTLKNNDKTIDMNVDETLYNHFQSLSPLEKKRIQDLMTLKLLQQTKQ*
Ga0114841_10760783	3300008259	Freshwater, Plankton	MPKQKKLFTVKTKNNDINMNVDEALFNHFQTLTPLQQKAVQDLMTLKLLQQNYQ*
Ga0114841_10995223	3300008259	Freshwater, Plankton	MPKQKTLFTVKTKNNDINMNVDEHLYNHFQTLTPAQQKAIHDLMLLKMLQDFDD*
Ga0114336_13051902	3300008261	Freshwater, Plankton	MTKQKKLFSIKNKNNQINMNVDEQLYNHFQSLSPIQQKRIQDLMTLKMLQETNYRA*
Ga0114337_11950863	3300008262	Freshwater, Plankton	MPKQKKLFTIKNKNNKINMNVDEHLYNHFQTLTPAQQKAIHDLMLLKMLQDFDD*
Ga0114876_10216151	3300008448	Freshwater Lake	QKKLFSVKNNDKNIDMNVDEALYKHFQSLTPLEQKRIQDLMTLKLLQQINE*
Ga0114973_101799572	3300009068	Freshwater Lake	MTKQKKLFTMKNNKQKINMNVDEALYNHFQTLTPLQQKTIMDMMILKMHQDLNE*
Ga0114980_108061002	3300009152	Freshwater Lake	IYIKKFNIMYINMPKQKKLFTVKTKNNDINMNVDEHLYNHFQTLTPAQQKAIHDLMLLKI
Ga0114969_102817243	3300009181	Freshwater Lake	MPKQKKLFSIKNNNKKINMNVDESLFNHFQTLTPLQQKAVQDLMTLKLLEQNEQ*
Ga0114967_104741401	3300010160	Freshwater Lake	MPKQKKLFTVKTKNNDINMNVDEALFNHFLTLTPLQQKAVQDLMTLKLLQQNYQ*
Ga0114967_105397471	3300010160	Freshwater Lake	MPKQKLLFPIKNKNSKINMNVDEHLYNHFQTLTPAQQKAIHDLMLLKMLQDFDD*
Ga0136644_104232152	3300010334	Freshwater Lake	MTKQKKLFTMKNNKQKINMNVDEALYNHFQTLSPLQQKTIMDMMILKMHQDLNE*
Ga0133913_122739801	3300010885	Freshwater Lake	MVKKRTLFSFKQNENQINMDVDESLYNHFQTLTPLKQKAVQDLMMLKYLQNMYDK*
Ga0157208_100388571	3300012667	Freshwater	NMPKQKKLFSIKNKDNQMNMNVNETLYNHFQSLSPIQQKRIQDLMTLKMLQETNYRA*
Ga0164293_105047062	3300013004	Freshwater	MPKQKKLFTIKNKNNKINMNVDEHLYNHFQTLTPAQQKAIHDLMLLKILQDSND*
Ga0164293_105693012	3300013004	Freshwater	MPKQKKLFSVKNNDKNIDMNVDEALYKHFQSLTPLEQKRIQDLMTL
Ga0164292_104783702	3300013005	Freshwater	MPKQKKLFTKKKKNNKINMNVDEHLYNHFQTLTPAQQKAIHDLMLLKILQDSDD*
Ga0164295_110521441	3300013014	Freshwater	MYINMPKQKTLFTVKTKNNDINMNVNEHLYNHFQSLTPAQQKAIQDLMLLKILQDFND*
Ga0211732_15080502	3300020141	Freshwater	MPKQKKLFSVKNNDQNLDMNVDEALYKHFQSLTPLEQKRIQDLMTLKLLEQIYQ
Ga0211734_107169603	3300020159	Freshwater	MPKQMKLFSVKNNDKNIDMNVDEALYKHFQSLTPLEQKRIQDLMTLKLLQQINE
Ga0211734_112737583	3300020159	Freshwater	MPKQKKLFTVKNNDKKIDMNVDEALFKHFQSLSPLQQKAVQDLMTLKLLQQINQ
Ga0211733_100450334	3300020160	Freshwater	YKEILISNIYYYMTKQKKLFTLKNNDKNIDMNVDEALYKHFQTLTPLQQKAVQDLMTLKLLQLNQ
Ga0211733_106805632	3300020160	Freshwater	INNMTKKKTLFSIKNKQNKINMDVDESLYNHFQTLTPLQQKAVQDLMTLKLLQQNKQ
Ga0211733_111524812	3300020160	Freshwater	MPKQKKLFSVKNNDKNIDMNVDEALYKHFQSLTPLEQKRIQDLMTLKLLQQINE
Ga0211735_102146184	3300020162	Freshwater	MTKKKTLFSIKNKQNKINMDVDESLYNHFQTLTPLQQKAVQDLMTLKLLQQNKQ
Ga0208591_10135423	3300020493	Freshwater	MPKQKKLFSIKNKDNQMNMNVDETLYNHFQSLSPIQQKRIQDLMTLKMLQETNYRA
Ga0208720_10330582	3300020495	Freshwater	MPKQKKLFSIKNKDNQMNMNVDETLYNHFQSLSPIQQKRIQDLMTLKM
Ga0207938_10432211	3300020525	Freshwater	MPKQKKLFSIKNNNKKINMNVDESLFNHFQTLTPLQQKAVQDLMTLKLLEQNKQ
Ga0208224_10079933	3300020528	Freshwater	MPKQKKLFSIKNNNKKINMNVDESLFNHFQTLTPLQQKAVQDLMTLKLLEQNEQ
Ga0208852_10679092	3300020560	Freshwater	QKKLFSIKNKDNQMNMNVDETLYNHFQSLSPIQQKRIQDLMTLKMLQETNYRA
Ga0207934_10244881	3300020561	Freshwater	ICQNKKKLFSIKNKDNQMNMNVDETLYNHFQSLSPIQQKRIQDLMTLKMLQETNYRA
Ga0208485_10068104	3300020573	Freshwater	MPKQKKLFSVKNNDKNIDMNVDEALYKHFQSLTPLEQKRIQDLMTLKLFQLINE
Ga0214162_10231443	3300021108	Freshwater	MPKQKKLFTIKNKNNKINMNVDEHLYNHFQTLTPAQQKAIHDLMLLKILQDSND
Ga0209596_13644661	3300027754	Freshwater Lake	FSIKNKNNQINMNVDETLYSHFQSLSPIQQKRIQDLMTLKMLQETNYRA
(restricted) Ga0247834_12160392	3300027977	Freshwater	MPKQKKLFTIKNNDTNIDMNVDEALYKHFQSLTPLEQKRIQDLMTLKLLFEQINDQ
Ga0315907_112217492	3300031758	Freshwater	MPKQKTLFTLKNNDKTIDMNVDEILYNHFQSLSPLEKKRIQDLMTLKLLQQTKQ
Ga0315907_112922731	3300031758	Freshwater	MPKQKTLFTLKNNDKNIDMNVDEALYNHFQSLSPLEKKRIQDLMTLKLLQQTKQ
Ga0315899_107109032	3300031784	Freshwater	MPKQKKLFTFKTKNNDINMNVDEALFNHFQTLTPLQQKAVQDLMTLKLLQQNYQ
Ga0315899_108896791	3300031784	Freshwater	MPKQKKLFTIKNNNNKINMNVDEHLYNHFQSLTPAQQKAIQDLMLSKILQDFNN
Ga0315899_111199902	3300031784	Freshwater	MPKQKKLFTIKNKNNKINMNVDEHLYNHFQSLTPAQQKAIQDLMLLKILQDFND
Ga0315899_117528182	3300031784	Freshwater	MTKQKKLFTFENNDVNIDMNVDEALYNHFQSLSPLEKKRIQDLMTLKLLQQMYD
Ga0315908_107969612	3300031786	Freshwater	MPKQKKLFTVKTKNNDINMNVDEHLYNHFQTLTPAQQKAIHDLMLLKILQDFDD
Ga0315908_109284772	3300031786	Freshwater	MPKQKKLFSVKNNDKNIDMNVDEALYKHFQSLTPLEQKRIQDLMTLKL
Ga0315908_111976042	3300031786	Freshwater	MPKKKTLFTLKNNDQNIDMNVDEALYNHFQSLSPLEKKRIQDLMILKLLQQIYD
Ga0315908_113644131	3300031786	Freshwater	MTKQKKLFTFENNDANIDMNVDEALYKHFQSLSPLEQKRIQDLMTLKLLQQTNH
Ga0315908_115140451	3300031786	Freshwater	MPKQKKLFTLKNNDKNIDMNVDEALYNHFQSLSPLEKKRIQDLMTLKLLQQTKQ
Ga0315900_103512591	3300031787	Freshwater	MPKQKTLFTLKNNDKNIDMNVDEALYNHFQSLSPLEKKRIQDLMILKLLQQIYD
Ga0315900_110837392	3300031787	Freshwater	MPKQKKLFTIKNKNNKINMNVDEHLYNHFQSLTPAQQKAIQDLMLSKILQDFNN
Ga0315906_110261502	3300032050	Freshwater	MPKQKKLFTIKNKNNKINMNVDELLYNHFQSLTPAQQKAIQDLMLLKILQDFND
Ga0334989_0221239_638_805	3300033984	Freshwater	MTKQKKLFSIKNKNNQINMNVDEQLYNHFQSLSPIQQKRIQDLMTLKMLQESKKL
Ga0334989_0522663_51_215	3300033984	Freshwater	MPKQKKLFTVKTKNNDINMNVDEHLYNHFQTLTPAQQKAIHDLMLLKMLQDFND
Ga0334994_0392642_525_671	3300033993	Freshwater	MPKQKKLFSVKNNDKNIDMNVDEALYKHFQSLTPLEQKRIQDLMTLKLL
Ga0335005_0602932_436_594	3300034022	Freshwater	KKLFSIKNKDNQMNMNVDETLYNHFQSLSPIQQKRIQDLMTLKMLQETNYRA
Ga0335021_0203106_881_1051	3300034023	Freshwater	MPKQKKLFSIKNKGSQMNMNVDETLYNHFQSLSPIQQKRIQDLMTLKMLQETNYRA
Ga0335023_0122678_720_884	3300034050	Freshwater	MTKQKKLFTINNNKNKINMNVDEALHNHFQTLSPLQQKAVQDLMTLKLLQQNYQ
Ga0335023_0387173_123_293	3300034050	Freshwater	MPKQKKLFSIKNKDNQMNMNVNETLYNHFQSLSPIQQKRIQDLMTLKMLQETNSRV
Ga0335023_0599931_1_147	3300034050	Freshwater	MPKQKKLFTIKNKNNKINMNVDEHLYNHFQTLTPAQQKAIHDLMLLKIL
Ga0334983_0761361_110_274	3300034060	Freshwater	MTKKKTLFSIKNKQNKINMDVDESLYNHFQTLTPLQQKAVQDLMTLKLLQQNSQ
Ga0335025_0500191_443_607	3300034096	Freshwater	MPKQKKLFTVKTKNNDINMNVDEHLYNHFQTLTPAQQKAIHDLMLLKILQDSDN
Ga0335037_0144927_1164_1295	3300034107	Freshwater	MPKQKKLFSIKNKNDKMNMNVDETLYNHFQSLSPIQQKRIQDLM
Ga0335037_0393570_569_739	3300034107	Freshwater	MTKQKKLFSIKNKNNQINMNVDETLYSHFQSLSPIQQKRIQDLMTLKMLQETNFHV
Ga0335037_0659431_3_152	3300034107	Freshwater	FSIKNKDNQMNMNVDETLYNHFQSLSPIQQKRIQDLMTLKMLQETNYRA
Ga0335068_0067135_169_339	3300034116	Freshwater	MYMPKQKKLFTIKNKNNKINMNVDEHLYNHFQTLTPAQQKAIHDLMLLKMLQDFDD
Ga0335017_0212943_784_948	3300034167	Freshwater	MTKQKKLFSIKNNNKKINMNVDESLFNHFQTLTPLQQKAVQDLMTLKLLEQNEQ
Ga0334997_0558139_563_709	3300034280	Freshwater	MPKQKKSFSVKNNEKNIDMNVDEALYKHFQSLTPSEQKRIQDLMTLKLL