Metagenome Family F102560

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Overview

Basic Information
Family ID	F102560
Family Type	Metagenome
Number of Sequences	101
Average Sequence Length	82 residues
Representative Sequence	VSQSQLAVSNKKPRFGPKVATQAWWIERIKEDPIYQYSEEWAKHSEYQVARWKILAELDYKVLGTSILRGAPGLGQEYPPKIEVKPF
Number of Associated Samples	36
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	4.95 %
% of genes from short scaffolds (< 2000 bps)	6.93 %
Associated GOLD sequencing projects	32
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Unclassified (98.020 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton (55.446 % of family members)
Environment Ontology (ENVO)	Unclassified (55.446 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (78.218 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108.110.112.114.116.118.120.122.124.126.128.130.132.134.136.138.140.142 1Ga0068877_101653802 2Ga0068877_101989382 3Ga0068877_102934731 4Ga0068877_103642682 5Ga0068877_104825591 6Ga0068877_106363311 7Ga0068877_107487771 8Ga0068877_107560441 9Ga0068876_102493711 10Ga0068876_103004352 11Ga0068876_107843342 12Ga0079957_11476313 13Ga0102822_11583911 14Ga0102914_11975151 15Ga0102916_11999791 16Ga0102898_11631661 17Ga0114338_10231514 18Ga0114338_10231712 19Ga0114338_10645121 20Ga0114338_10958762 21Ga0114338_11628211 22Ga0114338_11836551 23Ga0114338_12025421 24Ga0114338_12088952 25Ga0114338_12605691 26Ga0114338_12628571 27Ga0114338_12716141 28Ga0114338_12902651 29Ga0114338_12961282 30Ga0114338_12973031 31Ga0114338_13012661 32Ga0114338_13031931 33Ga0114339_10320822 34Ga0114339_10322591 35Ga0114339_10435896 36Ga0114339_11021952 37Ga0114339_11238401 38Ga0114339_11285102 39Ga0114339_11668781 40Ga0114339_11728441 41Ga0114339_12227001 42Ga0114339_12239751 43Ga0114339_12315281 44Ga0114339_12500532 45Ga0114339_12639841 46Ga0114339_12658811 47Ga0114339_12819861 48Ga0114339_12841091 49Ga0114339_12901181 50Ga0114342_10076244 51Ga0114342_11038781 52Ga0114348_10263761 53Ga0114348_11316311 54Ga0114356_14040451 55Ga0114356_15355691 56Ga0114359_11054023 57Ga0114359_11708912 58Ga0114359_12312202 59Ga0114359_12666022 60Ga0114349_10791613 61Ga0114349_10839312 62Ga0114349_11160891 63Ga0114349_12252002 64Ga0114349_12323152 65Ga0114349_12407071 66Ga0114349_12617351 67Ga0114349_12761832 68Ga0114353_12656062 69Ga0114361_11674041 70Ga0114361_12427561 71Ga0114361_12758981 72Ga0114357_12765881 73Ga0102813_12893821 74Ga0102811_11139962 75Ga0102814_102616001 76Ga0208163_10691821 77Ga0208444_10440711 78Ga0208305_103564951 79Ga0209972_100626321 80Ga0209985_100622081 81Ga0209985_102308772 82Ga0209985_102604721 83Ga0209985_102905012 84Ga0209985_103395911 85Ga0209985_103519681 86Ga0209985_104748361 87Ga0209990_101205321 88Ga0209990_103196451 89Ga0209990_103484061 90Ga0315904_110295291 91Ga0315904_112918411 92Ga0315905_109159691 93Ga0316625_1026020411 94Ga0334978_0587580_2_199 95Ga0334998_0447612_430_729 96Ga0335021_0360701_495_764 97Ga0335021_0673128_326_505 98Ga0335001_0223509_797_1045 99Ga0335019_0325998_2_205 100Ga0335051_0463009_361_594 101Ga0334997_0558158_436_660
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108.110.112.114.116.118.120.122.124.126.128.130.132.134.136.138.140.142 1Ga0068877_101653802 2Ga0068877_101989382 3Ga0068877_102934731 4Ga0068877_103642682 5Ga0068877_104825591 6Ga0068877_107487771 7Ga0079957_11476313 8Ga0114338_10231514 9Ga0114338_10645121 10Ga0114338_12605691 11Ga0114339_12227001 12Ga0114339_12819861 13Ga0114339_12901181 14Ga0114356_14040451 15Ga0208444_10440711 16Ga0208305_103564951 17Ga0209985_102308772 18Ga0209985_104748361 19Ga0334998_0447612_430_729 20Ga0335021_0673128_326_505
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108.110.112.114.116.118.120.122.124.126.128.130.132.134.136.138.140.142 1Ga0068877_101653802 2Ga0068877_101989382 3Ga0068877_102934731 4Ga0068877_103642682 5Ga0068877_104825591 6Ga0068877_107487771 7Ga0079957_11476313 8Ga0114338_10231514 9Ga0114338_10645121 10Ga0114338_12605691 11Ga0114339_12227001 12Ga0114339_12819861 13Ga0114339_12901181 14Ga0114356_14040451 15Ga0208444_10440711 16Ga0208305_103564951 17Ga0209985_102308772 18Ga0209985_104748361 19Ga0334998_0447612_430_729 20Ga0335021_0673128_326_505
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 44.83% β-sheet: 0.00% Coil/Unstructured: 55.17%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	1.98 %
Unclassified	root	N/A	98.02 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.02 %
Viruses	superkingdom	All Organisms → Viruses	1.98 %

Name	Rank	Taxonomy	Distribution
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.98 %
Unclassified	root	N/A	98.02 %

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005525\|Ga0068877_10364268	Not Available	822	Open in IMG/M
3300005527\|Ga0068876_10249371	All Organisms → Viruses → Predicted Viral	1019	Open in IMG/M
3300008106\|Ga0114339_1032259	All Organisms → Viruses → Predicted Viral	2910	Open in IMG/M
3300008106\|Ga0114339_1102195	Not Available	1104	Open in IMG/M
3300008106\|Ga0114339_1123840	Not Available	949	Open in IMG/M
3300008115\|Ga0114348_1131631	Not Available	521	Open in IMG/M
3300008121\|Ga0114356_1535569	Not Available	543	Open in IMG/M
3300027753\|Ga0208305_10356495	Not Available	506	Open in IMG/M

Showing 1 to 8 of 8 entries

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	99.01%
Terrestrial	Environmental → Terrestrial	0.99%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	89.11%
Marine	Environmental → Aquatic → Marine	9.90%
Soil	Environmental → Terrestrial → Soil	0.99%

Habitat	Taxonomy	Distribution
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	9.90%
Lake	Environmental → Aquatic → Freshwater → Lake	64.36%
Lentic	Environmental → Aquatic → Freshwater → Lentic	21.78%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	2.97%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.99%

Habitat	Taxonomy	Distribution
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	9.90%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	64.36%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	21.78%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	2.97%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	9.90%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	7.92%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	2.97%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	21.78%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	55.45%
Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake	0.99%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.99%

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300005525	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel6S_1000h metaG	Environmental	Open in IMG/M
3300005527	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG	Environmental	Open in IMG/M
3300005805	Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA	Environmental	Open in IMG/M
3300007558	Estuarine microbial communities from the Columbia River estuary - Flood tide non-ETM metaG S.733	Environmental	Open in IMG/M
3300007561	Estuarine microbial communities from the Columbia River estuary - metaG 1561A-3	Environmental	Open in IMG/M
3300007585	Estuarine microbial communities from the Columbia River estuary - metaG 1562A-3	Environmental	Open in IMG/M
3300007658	Estuarine microbial communities from the Columbia River estuary - metaG 1555A-3	Environmental	Open in IMG/M
3300008105	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, sample E2014-0046-100-LTR	Environmental	Open in IMG/M
3300008106	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-53-LTR	Environmental	Open in IMG/M
3300008109	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-53-LTR	Environmental	Open in IMG/M

Showing 1 to 10 of 36 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0068877_101653802	3300005525	Freshwater Lake	VATRAWWIEKIKEDPIYQYTEEWAKHSEYQVARWKIFAELNHKVLGTSILRGAPGFGQAYPPKIEVKPFWFKPLFGVDFRDFKLWS*
Ga0068877_101989382	3300005525	Freshwater Lake	VSQSQLAVSNKKPRFGPKVATQAWWIERIKEDPLYQYMEEWAKHSEYQVARWKILAELDYKVLGTSILRPAGRKKKEQATMKKP*
Ga0068877_102934731	3300005525	Freshwater Lake	LSFFLSTVSQSQLAVSNKKPKFGPRVATQAWWIERITQDPIYQFSEEWAKHSEYQVARWKILAELDYKV
Ga0068877_103642682	3300005525	Freshwater Lake	VSQLAVSNKKPRFGPNVATQAWWIEKIKEDPIYQYTEEWAKHSEYQVARWKILAELDCKVAGTSILRGAPGFGQALPPKIEVKPFRFKPIIGADLKVFQLWSYGWKQPSL*
Ga0068877_104825591	3300005525	Freshwater Lake	LAVSNKKPRFGPKVATQAWWIERIKEDPIYQYSEEWAKHSEYQVARWKILAELDYKVLGTSILRGAPGLGQEYPPKIEVKPF*
Ga0068877_106363311	3300005525	Freshwater Lake	VSQSQLAVSNKKPRFGSKVATQAWWIDKIKEDPTYQYTEEWAKHSEYQVARWKILAELDYKVLGTSILRGAPGLDQEYPPKIEVKPFWFKPLFGV
Ga0068877_107487771	3300005525	Freshwater Lake	LICQFVFLLSTVSQLKLTAVSNKKPKFGPKVATQAWWIEEIKKDPIYQYTEEWAKHSEYQVARWKILAELDYKVLGTSILR
Ga0068877_107560441	3300005525	Freshwater Lake	VSQLQLAAVSNKKPKFGPKVATQAWWIEEIRKDPNYRYTEEWAKHSEYQVARWKILAELDYKVLGTSILRGAPGLGQTYPPKIE
Ga0068876_102493711	3300005527	Freshwater Lake	LIFQFVFLLSTVSQLAVSNKKPRFGPNVATQAWWIEKIKEDPIYQYTEEWAKHSEYQVARWKILAELDCKVAGTSILRGAPGFGQALPPKIEVKPFRFKPIIGADLKVFQLWSYGWKQPSL*
Ga0068876_103004352	3300005527	Freshwater Lake	VSQSQLAVSNKKPRFGPKVATQAWWIERIKEDPIYQYSEEWAKHSEYQVARWKILAELDYKVLGTSILRGAPGLGQEYPPKIEVKPF*
Ga0068876_107843342	3300005527	Freshwater Lake	VSQLQLAAVSNKKPKFGPKVATQAWWIEEIKKEPIYQYTEEWAKHSEYQVARWKILAELDYKVSGT
Ga0079957_11476313	3300005805	Lake	VSQLVASAVSNKKPRFGPRVATQAWWIERIREDPIYLYTEEWAKHSEYQVARWKILAELDYKVAGTSILKGAPGLGQA
Ga0102822_11583911	3300007558	Estuarine	LTAVSNKKPKFGPKVATQAWWLEEIKKDPIYQYTEEWAKHSEYQVARWKILAELDYKVLGTSTLRGAPGFGQTYPPRIHYKPSWF
Ga0102914_11975151	3300007561	Estuarine	VSQAVSNKKPKFGPKVATQAWWIEKIKQDPIYQYTEEWAKHSEYQVARWKILAELDYKVSGTSILRGAPGLGQTYPPKIEVKPFWFKPIC
Ga0102916_11999791	3300007585	Estuarine	VAVSNKKPKFGPKVATQAWWIEEIKRNPIYQYTEEWAKHSEYQVARWKILAELDYKVLGTSTLRGAPGFGQTYPPRIQYKPFWFKP
Ga0102898_11631661	3300007658	Estuarine	LTAVSNKKPKFGPKVATQAWWIEEVKKDPIYQYTEEWAKHSEYQVARWKILAELDYKVLGTSILRGAPGLGQAYPPKIEV
Ga0114338_10231514	3300008105	Freshwater, Plankton	LEVSNKKPRFGSKVATQAWWIDKIKEDPICHYMEEWAKHSEYQVARWKILAELDYKVLGTSILRVAPGLDQDYPPKIEVRPFWFKPLFGVDFRDFKLWS*
Ga0114338_10231712	3300008105	Freshwater, Plankton	VSQSQLAVSNKKPRFGPKVTTQAWWIEKNKEDPIYQYKEEWAKHSEYQVARWKILAELDYKVLGTSILKGAPGLGQ*
Ga0114338_10645121	3300008105	Freshwater, Plankton	VATQAWWIERIKEDPIYQYTEEWAKHSEYQVARWKILAELDYKVLGTSILRGAPGLGQAYPPK
Ga0114338_10958762	3300008105	Freshwater, Plankton	VSQSQLAVSNKKPRFAPKVATQAWWIERIKEDPLYQYMEEWAKHSEYQVARWKILAELDYKVLGTSILRGAPVLGQEYPPKIEIKPF*
Ga0114338_11628211	3300008105	Freshwater, Plankton	VSQSQLAVSNKRPKFGSRVATQAWWIERIKQDPIYQYTEEWAKHFEYQEARWKILAELDYRVLGTSILRGAPGLGQAYPPKI
Ga0114338_11836551	3300008105	Freshwater, Plankton	VSQSQLAVPNKKPKFGPRVATQAWWIERIKQDQIYQYTEECAKHSEYQVARWKILAELDYKVLGTSILRGAPGLGQAYPPKIEVKPFWFKPLIGAD
Ga0114338_12025421	3300008105	Freshwater, Plankton	VATQAWWIERIKQDPIYQYTEEWAKHSEYHVARWKILAELDYKVLGTSILRGAPGLGQAYPPKIQ
Ga0114338_12088952	3300008105	Freshwater, Plankton	VSQLQLAAVSNKKPKFGPKVATQAWWIEEIRKDPIYQYTEEWAKHFEYQVARWKILAELDYKVLGTSILRGAPGLGQTYPPKIVFKPFWFKPIC*
Ga0114338_12605691	3300008105	Freshwater, Plankton	VATQAWWIEKTKEDPLYQYMEEWAKHSEYQVARWKILAELDYKVLGTSILRGAPGFGQAYPPKIEVKPFWFKPLIGADFKVFQLWSWLEATKSLGLPISEE
Ga0114338_12628571	3300008105	Freshwater, Plankton	VSQSQLAVSNKKPKFGPRVATQAWWIERIKQDPIYQYTEEWAKHSEYQEARWKILAELDYRVLGTSILRGAPGLGQAYPPKI
Ga0114338_12716141	3300008105	Freshwater, Plankton	VSQLAVSNKKPRLGPRVATQAWWIEKIKKDPIYQYTEEWAKHSEYQVARWKILAELDYKVADTSILRGAPGFGQAYPPKIEVKPFWFKPLIGADFKVFQL
Ga0114338_12902651	3300008105	Freshwater, Plankton	VSQLKPAAVSNKKPKFGPKVATQAWWIEEIKKDPIYQYTEEWAKHSEYQVARWKILAELDYKVLG
Ga0114338_12961282	3300008105	Freshwater, Plankton	VSQLKLTAVSNKKPKFGPKVATLAWWIEEIKKDPIYQYTEEWAKHSEYQVARWKILAELDYKVSGTSILRG
Ga0114338_12973031	3300008105	Freshwater, Plankton	VSQLKSAAASNKKPKFGPNVATQAWWIEEIKEDPIYQYTEEWAKHSEYQVARWKILAELDYKVLGTSIL
Ga0114338_13012661	3300008105	Freshwater, Plankton	VSQSQLAVSNKKPKFEPRVATQAWWIEKIEQDPIYQYTEEWAKHSEYQVARWKILAELDYKVLGTSILRGAP
Ga0114338_13031931	3300008105	Freshwater, Plankton	VSQSQLAVPNKKPKFEPRVATQAWWIGRIKEDPIYQYTEEWAKHSEYQVARWKILAELDYKVLGTSILRGAPGLGQAYPPKIQF
Ga0114339_10320822	3300008106	Freshwater, Plankton	VSQSQLAVSNKKPRFGPKVATQAWWIERIKEDTIYHYTEEWTKHSEYQVAKWKIPAELDYKVLGTSILRGAPGFGQAYPPKIEVRPF*
Ga0114339_10322591	3300008106	Freshwater, Plankton	LEVSNKKPRFGSKVATQAWWIDKIKEDPICHYMEEWAKHSEYQVARWKILAELDYKVLGTSILRGAPGLDQDYPPKIEVRPFWFKPLFGVDFRDFKLWS*
Ga0114339_10435896	3300008106	Freshwater, Plankton	MTVSSKKPRFGPKVATQAWWIERIRDDPIYQYSEEWAKHSEYQVARWKALAELGYKVLGTSILRGAPGLGQEYPPKIEVKPFWFKPLF*
Ga0114339_11021952	3300008106	Freshwater, Plankton	VSQSQLAVSNKKPRFGPRVATQAWWIKKIKEDPIYQYTEEWAKHSEYQVARWKILAELDYKVLGTSILRGAPGFGQAYPPKIEVKPFWFKPLIGADFKVFQLWSWLEAT
Ga0114339_11238401	3300008106	Freshwater, Plankton	VSQSQLAVSNNKPRFGSRVATQAWWIEKIKEDPIYQYTEEWAKHSEYQVARWKVLAELDYKVLGTSILRGAPGFGQAYPPKIEVKPFWFKPLIGADFKVFQLWSWLEAT
Ga0114339_11285102	3300008106	Freshwater, Plankton	LSFFLSTVSQSQLAVSNKKPKFGPRVATQAWWIERIKQDPIYQYTEEWAKHSEYQVARWKILAELDYKVLG
Ga0114339_11668781	3300008106	Freshwater, Plankton	VSQSQLAVSNKKPRFGPKVATQAWWIDRIKEDSIYQYSEEWAKHSEYQVARWKILAELDYKVLGTSILRGAPGFGQAYPPKIEVKPFWFK
Ga0114339_11728441	3300008106	Freshwater, Plankton	VSQLKATAVSNKKPKFGPKVATQAWWIEEIKKDPIYQYTAEWAKHSEYQLARWKILAELDYKVLGTS
Ga0114339_12227001	3300008106	Freshwater, Plankton	VAVSNKKPKFGPKAATQAWWIEEIKKDPTYQYTEEWAKHSEYQVARWKILAELDYKVSGTSILRGA
Ga0114339_12239751	3300008106	Freshwater, Plankton	VSQAVSNKKPKFGPRVETQAWWIEKIKQDPIYQYTEEWAKHSEYQVARWKILAELDYKVLGTSILRG
Ga0114339_12315281	3300008106	Freshwater, Plankton	VSQLQLAAVSNKKPKFGPKVATQASWIENIRKDPIYQYTEEWAKHSEYQVARWKILAELDYK
Ga0114339_12500532	3300008106	Freshwater, Plankton	VSQLQLAAVSNKKPKFGPKVATQAWWIENIRKDPIYQYTEEWAKHSEYQVARWKILAELDYKVLGTDI
Ga0114339_12639841	3300008106	Freshwater, Plankton	VSQLKSAAVSNKKPKFGPKVATQAWWIEEIRKDPIYQYTEEWAKHSDYQVARWKILAELDYKVLGTSILRGAPGLGQTYPPKIVFK
Ga0114339_12658811	3300008106	Freshwater, Plankton	VSQSQLAVSNKKPKFGPRVATQAWWIERIKQDPIYQYTEERAKHSEYQVARWKILAELDYKVLCTSILRGAPGLGQAYPPKIQFKP
Ga0114339_12819861	3300008106	Freshwater, Plankton	VSQLQLAAVSNKKPKFGPKVATQAWWIENIRKDPIYQYTEEWAKHSEYQVARWKILAELDYKVLGTSILRGAPGIGQTYPPKVEFKPSWFKPICEVD
Ga0114339_12841091	3300008106	Freshwater, Plankton	VSQLQLAAVSNKKSKFGPKVATQAWWIEEIKKDPIYQYTEEWAKHSEYQVARWKILAELDYKVLGTSI
Ga0114339_12901181	3300008106	Freshwater, Plankton	KFGPKVATQAWWIEEIKQDPIYQYTEEWAKHSEYQVARWKILAELDYKVLGTSILRGAPGLGQAYPPKIQFKPSWFKPLKELT*
Ga0114342_10076244	3300008109	Freshwater, Plankton	VSQLQLAAVSNKKPKFGPKVATQAWWIENIRKDPIYQYTEEWAKHSDYQVARWKILAELDYKVLGTSILRGAPGLGQTYPPKIVCKVRIYFKCSY*
Ga0114342_11038781	3300008109	Freshwater, Plankton	VSQLKLTAVSNKKPKFGPKVATQAWWIEEVKKDPIYQYTEEWAKHSEYQVARWKILAELDYKVLGTSTLRGAPGLGQIYPPKIQFKPFWFKPLIGA
Ga0114348_10263761	3300008115	Freshwater, Plankton	VFQSQLAVSNKKPRFGPKVATQAWWIKRIKEDPIYQYSEEWAKHSEYQVARWKILAELDYKVLGTSILRGAPGMGQEYPPSIEVK
Ga0114348_11316311	3300008115	Freshwater, Plankton	VSQSQLAVPNKKPKFGPRVATQAWWIERIKQDQIYQYTEECAKHSEYQVARWKILAELDYKVLGTSILRGAPGLGQAYPPKIEVKPFWFNPLIGADFKVYQPW
Ga0114356_14040451	3300008121	Freshwater, Plankton	VSQLKIAEGSNKKPRFGPKVATQAWWIENIRKDPIYQYTEEWAKHSEYQVARWKILAELDYKVLG
Ga0114356_15355691	3300008121	Freshwater, Plankton	VSQLKLAAVSNKKPKFGPKVATQAWWIEEIRKDPIYQYTEEWAKHSEYQVARWKILAELDYKVLGTSILRGAPGLGQKYPPKIVYKPFWFKPICGVDWPEFKL
Ga0114359_11054023	3300008122	Freshwater, Plankton	VATQAWWIERIKEDPIYQYSEEWAKHSEYQVARWKILAELDYKVLGTSILRGAPGLGQEYPPKIEVKPF*
Ga0114359_11708912	3300008122	Freshwater, Plankton	VSQSQLAVTNKKPRFGPKVATQAWWIEKIKEDPIYQYTEEWAKHSEYQVARWKILAELDYKVLGTSILRGAPGL
Ga0114359_12312202	3300008122	Freshwater, Plankton	VSQLNLTAVSNKKPKFGPKVATQAWWIEEIKRNPIYQYTEEWAKHSEYQVARWKILAELDYKVLGTSTLRGAPGF
Ga0114359_12666022	3300008122	Freshwater, Plankton	VSQSQLAVSNKKPRFGPKVETQAWWIEKNKEDPIYQYKEEWAKHSEYQVARWKILAEMDYKVLGTSILRGAPGLGQVFPPKIEVKP
Ga0114349_10791613	3300008263	Freshwater, Plankton	VSQSQLAVSNKKPRFAPKVATQAWWIERIKEDPLYQYMEEWAKHSEYQVARWKILAELDYKVLGTSILKGAPGLGQ*
Ga0114349_10839312	3300008263	Freshwater, Plankton	VSTQAWWIERIKEDPIYQYSEEWAKHSEYQVARWKILAELDYKVLGTSILRGAPGLGQEYPPKIEVKPF*
Ga0114349_11160891	3300008263	Freshwater, Plankton	VSQFQLAVSNKKPRFGPKVATQAWWIEKIKEDPIYQYTEEWAKHSEYQVARWKTLAELDYKVLGISILRGAPGLGQEYPPKIEVKPFWFNPLFGVDFRDFK
Ga0114349_12252002	3300008263	Freshwater, Plankton	VATRAWWIEKIKEDPIYQYTEEWAKHSEYQVARWKIFAELNHKVLGTSILRGAPGFGQAYPPKIEVKLFWFKPLFGVDFRDFKLWS*
Ga0114349_12323152	3300008263	Freshwater, Plankton	VSQLQLAAAVSNKKPKFGPKVATQAWWIENIRKDPIYQYTEEWAKHSEYQVARWKILA
Ga0114349_12407071	3300008263	Freshwater, Plankton	VSQSQLAVSNKKPKFGPKVATQAWWIEKIKQDPIYQYTEEWAKHSEYQVARWKVLAELDYKVLGTSTLRVAPGLGQTYPPRIQY
Ga0114349_12617351	3300008263	Freshwater, Plankton	VVTQAWWIEKIKEDPIYQYTEEWAKHSEYQVARWKILAELDNKVVGTSILRGAPGFGQAYPPKIEVKPFWFKPI
Ga0114349_12761832	3300008263	Freshwater, Plankton	VSQLAVSNKKPRFGPRVATQAWWIEKIKEDPIYQYTEEWAKHSEYQVARWKILAELDYKVLGTSILRGAPGLGQAYPP
Ga0114353_12656062	3300008264	Freshwater, Plankton	VSQLKATAVSNKKPKFGPKVATQAWWIEEIKRDPIYQYTEEWAKHSEYQVARWKILAELDYKVLGTSTLRGAPGFGQTYPPRIQYK
Ga0114361_11674041	3300008265	Freshwater, Plankton	VSQLQLAAVSNKKPKFGPKVATQAWWIENIRKDPIYQYTEEWAKHSEYQVARWKILAELDYKVLGTD
Ga0114361_12427561	3300008265	Freshwater, Plankton	VSQLKLTAVSNKKPKFGPKVATQAWWIEEIKRNPIYQYTEEWAKHSEYQVARWKILAELDYKVLGTSILRGAPGLGQTYPPKIQFKPSWF
Ga0114361_12758981	3300008265	Freshwater, Plankton	VSQLQLAVSNKKPKFGPKVATQAWWIEKIKQDPIYQYTEEWAKHSEYQVARWKILAELDYKVLGTSILKGAPGLGQIYPPKVEFKPFWFK
Ga0114357_12765881	3300008966	Freshwater, Plankton	VSQLKIAEGSNKKPRFGPKVATQAWWIENIRKDPIYQYTEEWAKHSEYQVARWKILAELDYKVLGTDI
Ga0102813_12893821	3300009003	Estuarine	VSQLQLAAVSNKKPKFGPKVATQAWWIEEVKKDHIYQYTEEWAKHSEYQVARWKILAELDYKVLGTSILRGAPGLGQTYPPKIQFKPFWFKPLI
Ga0102811_11139962	3300009024	Estuarine	LQLAAVSNKKPKFGPKVATQAWWIENIRKDPIYQYTEEWAKHSDYQVARWKILAELDYKVLGTSILRGAPGLGQTYPPKIQFKP
Ga0102814_102616001	3300009079	Estuarine	VSQLQLAAVSNKKPKFGPKVATQAWWIEEIKKDPIYQYTEEWAKHSEYQVARWKILAELDYKVLG
Ga0208163_10691821	3300027198	Estuarine	LSICFLLSTVSQLKLTAVSNKKPKFGPKVATQAWWIEEIKKDPIYQYTEEWAKHSAYQVARWKILAELDYKVLGTSILR
Ga0208444_10440711	3300027240	Estuarine	VTQLVVNKKPRFGPKVASQAWWIEEIKKDPIYKYTEEWAQHSEYQVARWKVLAELDYQVLGTDTLRGAPGFGK
Ga0208305_103564951	3300027753	Estuarine	LKTTAVPNKKPRFGPKVASQAWWIEEIRKDPIYHYTEEWAKHSEYQVARWKVLAELDYRVLGTDTLRGAPGFGQAYPPKIEIKPFWFKPICGVDWQEFKV
Ga0209972_100626321	3300027793	Freshwater Lake	VSQLKIAEGSNKKPRFGPKVATQAWWIENIRKDPIYQYTEEWAKHSEYQVARWKILAELDYKVLGTDILRGAP
Ga0209985_100622081	3300027806	Freshwater Lake	LQLVAVSNKKPKFGPKVATQAWWIEEIKRDPIYQYTEEWAKHSEYQVARWKILAELDYKVLGTSTLRGAP
Ga0209985_102308772	3300027806	Freshwater Lake	VSQSQLAVSNKKPRFGPKVATQAWXIDKIKEDPTYQYSEGLAKHSEYQVARQKILAELDYKVLGTSIVRGAL
Ga0209985_102604721	3300027806	Freshwater Lake	VSQLKIAEGSNKKPRFGPKVATQAWWIENIRKDPIYQYTEEWAKHSEYQVARWKILAELDYKVLGT
Ga0209985_102905012	3300027806	Freshwater Lake	VATRAWWIEKIKEDPIYQYTEEWAKHSEYQVARWKIFAELNHKVLGTSILRGAPGFGQAYPPKIEVKPFWFKPLFGVDFRDFKLWS
Ga0209985_103395911	3300027806	Freshwater Lake	LKSAAVSNKKPKFGPKVATQAWWIEEIKKDPIYQYTEEWAKHSEYQVARWKILAELDYKVLGTDILRGAP
Ga0209985_103519681	3300027806	Freshwater Lake	VSQLAVSNKKPRFGPNVATQAWWIEKIKEDPIYQYTEEWAKHSEYQVARWKILAELDCKVAGTSILRGAPGFGQALPPKIEVKPFRFKPIIGADLKVFQL
Ga0209985_104748361	3300027806	Freshwater Lake	AFYSFVSLLSLSSTVSQQMTVSSKKPRFGPKVATQAWWIERIRDDPIYQYSEEWAKHSEYQVARWKALAELGYKVLGTSILRGAPGLGQEYPPKIEVKPFWFKPLF
Ga0209990_101205321	3300027816	Freshwater Lake	VFQSQLAVSNKKPRFGPKVATQAWWIKRIKEDPIYQYSEEWAKHSEYQVARWKILAELDYKVLGTSILRGAPGLGQEYPPKIEVKPF
Ga0209990_103196451	3300027816	Freshwater Lake	LKAAAVSNKKPKFGPKVATQAWWIEEIKRDPIYQYTEEWAKHSEYQVARWKILAELDYKVLGTSTLRGAPGFGQTYPPRIQYKPSWFKPLIGA
Ga0209990_103484061	3300027816	Freshwater Lake	VSQQLAVSIKKPMFGPKVATQAWWIERINEDPIYQYSEEWAKHLEYQVARWKILAELDYKVLGTSILRGAPGLGQEYPPKIEVKPF
Ga0315904_110295291	3300031951	Freshwater	VTQLVVNKKPRFGPKVASQAWWIEEIRKDPIYQYTEEWAKHSEYQVARWKVLAELDYKVLGTDILRGAPGFGKTYP
Ga0315904_112918411	3300031951	Freshwater	LQLAVSNKKPKFGPKVATQAWWIEKIKQDPIYQYTEEWAKHSEYQVARWKILAELDYKVLGTSILRGAPGLGQTYPPKIQ
Ga0315905_109159691	3300032092	Freshwater	LSFFSSTVSQAVSNKKPKFGPKVATQAWWIENIRKDPIYQYTEEWAKHSEYQVARWKILAELDYKVSGTSILRGAPGLG
Ga0316625_1026020411	3300033418	Soil	VSQLVASAVSNKKPRFGPRVATQAWWIEKIREDPIYQYTEEWAKHSEYQVARWKTLAELDYKVAGTSILKGAPGLGQAYPPKI
Ga0334978_0587580_2_199	3300033979	Freshwater	MQLTAVSNKKPKFGPKVATQAWWIENIKKDPIYQYTEEWAKHSEYQVARWKILAELDYKVLGTSIL
Ga0334998_0447612_430_729	3300034019	Freshwater	LVASAVSNKKPRFGPRVATQAWWIERIREDPIYLYTEEWAKHSEYQVARWKTLAELDYKVAGTSILRGAPGLGQAYPPKIEVKPFWFKPLIGADFKDYQL
Ga0335021_0360701_495_764	3300034023	Freshwater	LVAASAVSNKKPRFGPKVATQAWWIERIREDPTYQYTEEWAKHSEYQVARWKILAELDYKVAGTSILKGAPGPGQAYPPKIEVKPFWFKP
Ga0335021_0673128_326_505	3300034023	Freshwater	MSQLVAVAVSNKKPRFGPRVATQAWWIERIREDPIYQYTEEWAKHSEYQVARWKILAELD
Ga0335001_0223509_797_1045	3300034064	Freshwater	LVAASAVSNKKPRFGPKVATQAWWIERIREDPTYQYTEEWAKHSEYQVARWKILAELDYKVAGTSILRGAPGLGQAYPPKIEV
Ga0335019_0325998_2_205	3300034066	Freshwater	MSQLVASAASNKKPRFGPRVATQAWWIERIREDPIYQYTEEWAKHSEYQVARWKILAELDYKVAGTSI
Ga0335051_0463009_361_594	3300034109	Freshwater	MFSLCLPTVSQLAAASAVSNKKPRFGPKVATQAWWIERIREDPIYQYTEEWAKHSEYQVARWKTLAELDYKVAGTSIL
Ga0334997_0558158_436_660	3300034280	Freshwater	VSQLVAASAVSNKKPRFGPKVATQAWWIERIREDPTYQYTEEWAKHSEYQVARWKILAELDYKVAGTSILKGAP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F102560

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences