Metagenome Family F102397

Overview

Basic Information

• Family ID: F102397
• Family Type: Metagenome
• Number of Sequences: 101
• Average Sequence Length: 41 residues
• Representative Sequence: VVTRDAVVVTRDAVVVTRDTVVVTRDTVVVTRDTVVMNE
• Number of Associated Samples: 5
• Number of Associated Scaffolds: 99

Quality Assessment

• Transcriptomic Evidence: No
• Most common taxonomic group: Unclassified
• % of genes with valid RBS motifs: 0.00 %
• % of genes near scaffold ends (potentially truncated): 0.00 %
• % of genes from short scaffolds (< 2000 bps): 0.00 %
• Associated GOLD sequencing projects: 4
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.63

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Unclassified (100.000 % of family members)
• NCBI Taxonomy ID: N/A
• Taxonomy: N/A

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake (99.010 % of family members)
• Environment Ontology (ENVO): Unclassified (92.079 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline) (100.000 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 55.22%
  β-sheet: 0.00%
  Coil/Unstructured: 44.78%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 99 Family Scaffolds
PF13307	Helicase_C_2	1.01

Phylogeny

NCBI Taxonomy

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	100.00 %

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Category

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	100.00%

Type

Habitat	Taxonomy	Distribution
Lake	Environmental → Aquatic → Freshwater → Lake	99.01%
Lentic	Environmental → Aquatic → Freshwater → Lentic	0.99%

Subtype

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	99.01%
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	0.99%

Habitat

Habitat	Taxonomy	Distribution
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	99.01%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	0.99%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300009151	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG	Environmental
3300010157	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_MF_MetaG	Environmental
3300010885	northern Canada Lakes Co-assembly	Environmental
3300020561	Freshwater microbial communities from Lake Mendota, WI - 22APR2009 deep hole epilimnion (SPAdes)	Environmental
3300028392	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_MF_MetaG (v2)	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0114962_105063633	3300009151	Freshwater Lake	VDTSDAVVVIRDTVVVTRDTVVVTRDTVVTTRDTVVV
Ga0114964_100330364	3300010157	Freshwater Lake	VVTRDAVVVTRDTVVFTRDTEVGSY*DTVVVNRDAVVVFREMQ*
Ga0114964_101175661	3300010157	Freshwater Lake	LVTKKGVIVTIDLVVVTREAVVVTRDTVVVTRDKASRDT
Ga0114964_101831763	3300010157	Freshwater Lake	VVTRDEVLVTRDAVVVTRKNANRDTVVVTRDTEAVTRDSVVIT*
Ga0114964_101862483	3300010157	Freshwater Lake	RDAVVVAKTIVAVSRDTVVVTRDTVVDTRDTVVVIRDTVVDTRNKLVVT*
Ga0114964_102433751	3300010157	Freshwater Lake	TKNKEVVTTRFAVVVTRDTVVVTRDAVVVTTRDAVVVNT*
Ga0114964_102437821	3300010157	Freshwater Lake	ESVVVTRDTVVVTRDTVVVFRDAVVVTRDTIVLT*
Ga0114964_102465832	3300010157	Freshwater Lake	VVTTRDAVVVTRDTVVVPRDAVVVSRGTVVVARDTVVLLEMPW*
Ga0114964_102670473	3300010157	Freshwater Lake	VVPRDAVVITRDTVIVTRDRVVVKGGKATNVTIVVTRDTVVVTRDTVVVT*
Ga0114964_102734311	3300010157	Freshwater Lake	RDTVVVTRDTVVVTRDTVVVTRDTLVVTRDAVISHGV*
Ga0114964_102947201	3300010157	Freshwater Lake	DTVVVTYNRVVVTRDTVVGTRDTVVVTRDAVINSRDTVVVLDMQ*
Ga0114964_102974231	3300010157	Freshwater Lake	KVVVSRDTVVVTRDTVVVTRDTVVVTRETVVVTNDVEDK*
Ga0114964_102992671	3300010157	Freshwater Lake	VVVISGDKVVATRDTVVVTRDAVLVTRDLVVVVTRDTVALLEIL*
Ga0114964_103215251	3300010157	Freshwater Lake	NRDTVVVSRDTPVRITRDAVVVTRDTVVVTRDTEVVTRDTVVVS*
Ga0114964_103229902	3300010157	Freshwater Lake	VVTRDTVVVTRDTVVVTSDKASRSTVVITRDAVVVTRDAVVVTREEQK*
Ga0114964_103303572	3300010157	Freshwater Lake	VATRDTVVVTRDAVVGFRDTVVVTLNKVVVARDTVVNTRE
Ga0114964_103320131	3300010157	Freshwater Lake	RDTVVITRDTVVVTRDTVVVTRDKATRDTVVVTR*
Ga0114964_103342511	3300010157	Freshwater Lake	VVVTRDTVVVARDTVVVTRDAVVVTRDTVVDTRDTLLEIQ*
Ga0114964_103404801	3300010157	Freshwater Lake	RDTVVVTRDAVVVTRDAVVVTKDTVVVTRDTVVVFGIH*
Ga0114964_103480851	3300010157	Freshwater Lake	VTRDTVVVTRDAVVVTRDTVVVTRDAVVVTKDTVWFVEILW*
Ga0114964_103561591	3300010157	Freshwater Lake	VVATRYLVVVTRNTVVFTNDTVVVTRDAVVVTRDTVVVTRDTVV
Ga0114964_103632891	3300010157	Freshwater Lake	VVVTRDKIVVTRDAVVVTRNTANRVVVVVNRDTVGRY*
Ga0114964_103656861	3300010157	Freshwater Lake	TVVVTRDAVVVTRDTVVVTRYTVVVTRETVVVTRKSY*
Ga0114964_103711131	3300010157	Freshwater Lake	VVTRDTVVVTRDTVVVTRDAVVVTRDTAVVTRDTALVTI*
Ga0114964_103761221	3300010157	Freshwater Lake	VVTRDTVVVPRNTVRVTRDTVVVTRDAVVVTRGTVVVT*
Ga0114964_103796791	3300010157	Freshwater Lake	TVVVTRDTVVVTRDAIVVTRGTVVDPKHKASRDTVVVTRDTIVLLEMQ*
Ga0114964_103804512	3300010157	Freshwater Lake	VVTRDTVVVTSNTVVVTRDTVVVHRDTVVVTRDTVVVLQVKQ*
Ga0114964_104122761	3300010157	Freshwater Lake	DVALVTRDTVVVTRDTVVVTSDAVVVTRDTVVVLEIQ*
Ga0114964_104183271	3300010157	Freshwater Lake	VVTRDTVVVTRDTVVLTRDTVVTTKDAVVVTRDAVVVREIQ*
Ga0114964_104268251	3300010157	Freshwater Lake	VTRNSVGVTRHKVVVTRDTVVVTRDTVITTRDTVVVTRDKLQKI*
Ga0114964_104444501	3300010157	Freshwater Lake	DTVVVTRDTVVVTRDTVVVTRDKASRDTVVTIRDTVVLTIYYKKR*
Ga0114964_104481082	3300010157	Freshwater Lake	TIVVTRDPEVDTRYTVVTTKDTEVVTRDTVVVTRDTLVHK*
Ga0114964_104735021	3300010157	Freshwater Lake	DTVVVFRDTVVVTRDTVVVTRDTVVVSRDIVVVS*
Ga0114964_104735022	3300010157	Freshwater Lake	VTRDTVVVSRDTVVVNRDAVVVTRDTVVVTRDTVVDATDTEVVT*
Ga0114964_104736962	3300010157	Freshwater Lake	DAVVVTRGTVVVTRDQVVVTRDTVVVTRDAVVVTKDTVVCI*
Ga0114964_104781551	3300010157	Freshwater Lake	TVVVTRDTAVVTRDTVQNTRDTVVVTRDTVVVARDTVVVI*
Ga0114964_104871981	3300010157	Freshwater Lake	TRDTVVVTRDAVVVTRDTVVVTSDTVLVTRDIKLILEIH*
Ga0114964_104895411	3300010157	Freshwater Lake	TVVVTRDTVVVTRDTVVVTRDTVVVPRDTVVITIQ*
Ga0114964_105092351	3300010157	Freshwater Lake	VITRDTEVVTRDTVVVTIDAVEVTRDEVVVTRDTVVFPRDT
Ga0114964_105092352	3300010157	Freshwater Lake	VVTRDAVVDTRDTVVVTRDTVVVTRDTVVVTGDIVVFY*
Ga0114964_105136801	3300010157	Freshwater Lake	DTVVTTRDTVVVTRDIVVVTRDKAIRDTVVVTKDT*
Ga0114964_105191283	3300010157	Freshwater Lake	DAVVVT*DAVVVTRDAVVVTRDAIVVTRDAVVATRDAVIQDIQ*
Ga0114964_105209051	3300010157	Freshwater Lake	VVTRYTVVVTRDTVIVARDSVVVTRDKVVVTRYTVVVTRKGY*
Ga0114964_105263842	3300010157	Freshwater Lake	LINTVVVTRDAVVVTRDIVVVKKEADVVSRDTVVVTR
Ga0114964_105436892	3300010157	Freshwater Lake	VVVTRDTVVVTRDTVVVTRDAVMVTSDTVEVFGDTE*
Ga0114964_105543191	3300010157	Freshwater Lake	VSRDTVVVTRFTVVVTSDTVVVTRDTVVVTRDGLV
Ga0114964_105543853	3300010157	Freshwater Lake	VTRDKATKDAVVVTRDTVVVTRDTLVVTRDKATIDTVVLLEIL*
Ga0114964_105564751	3300010157	Freshwater Lake	DTVVVTRDTVVVTRDTVVVARGTVVVTRDTVVVLKIQ*
Ga0114964_105567152	3300010157	Freshwater Lake	VVVTRDAVVVTRDAVVVTRDAVVGTRDTVVVTRDTVVVTRD*
Ga0114964_105571792	3300010157	Freshwater Lake	VTKDAVVGNKETVVVTRDTVVVTRDTLVVTRDIFIVT*
Ga0114964_105839891	3300010157	Freshwater Lake	VVTKYAVVITRDTVVVTRDTVVVTRDTVVVTRDTVVGTRDTV
Ga0114964_105865601	3300010157	Freshwater Lake	T*DAVVVTFNTVIFTRDTVVVTRDAVVVTRDAVAVTRDTVKDTRDAE*
Ga0114964_105903452	3300010157	Freshwater Lake	VVVTRDTVVVTRYAVVDTRDTVVVTRDAVAVTRDSVVILEIQ*
Ga0114964_106020961	3300010157	Freshwater Lake	VVIRDAVVDTRDAVVVTRDTVVVTRDTVVVIRDKATGDTVV
Ga0114964_106094382	3300010157	Freshwater Lake	VVSRDAVEVTRDAVVVARDIIVVTRDTVVVTIDAV
Ga0114964_106118161	3300010157	Freshwater Lake	DTVVVTRDTVVVTRDTVVVTRDTVVVTRDTVGSY*
Ga0114964_106135432	3300010157	Freshwater Lake	MVIVTRHTVVVTRDAVVVTRDTVVVTRHTVVVTRDTLVVTRY
Ga0114964_106243211	3300010157	Freshwater Lake	TRDTVVVTKDTVVVTRDTVVITRNAVVVPRYAVVVAIDTL*
Ga0114964_106262571	3300010157	Freshwater Lake	VVVTRDTAVVTRDAVVVIRDAVVVTRDKVVVTGDSILLLEMQ*
Ga0114964_106347532	3300010157	Freshwater Lake	TRDTVVVTRDTVKVTRDTVVVTRDTVVVTRDESIPEIQ*
Ga0114964_106348091	3300010157	Freshwater Lake	TRDTVVVTRDTVVVTRDSVVTRDTVVVTRDAVVV*
Ga0133913_116416245	3300010885	Freshwater Lake	VVVTKGTETRDNVVVTRDIVVVTGYTVVVTRDAVVTTRDTVVVS*
Ga0133913_122020482	3300010885	Freshwater Lake	TVVVTRDTVVVNRDTVVVTRDKATRDTVVTIRDTIILTIYYIIA*
Ga0133913_124272421	3300010885	Freshwater Lake	RDAVVVTIDAVVATRDTVVVTRDTVVFTRYTVTTIRD*
Ga0133913_124566724	3300010885	Freshwater Lake	SDALVVIRDTVVATRDAVMITRDTVVVFRDTVVATS*
Ga0133913_130634391	3300010885	Freshwater Lake	TVVVTRETVVTTRDAVVVTRNTVVVTMIKLLEKQ*
Ga0133913_132845051	3300010885	Freshwater Lake	TVVVTRDTVVDSRDTVVVTRGTVVVTRETVVLLEIPW*
Ga0133913_134438862	3300010885	Freshwater Lake	VVVTRDAVVVTGDTVVVTRDEIGVTRDTVVATRDTVVVTRDKTTRIQ*
Ga0133913_134981902	3300010885	Freshwater Lake	VVTRDAVVVTRDAVVVTRDTVVVTRDTVVVTRDTVVMNE*
Ga0207934_10823611	3300020561	Freshwater	DTVGVVTRDTVVVTRDTVVVNRDKATIDTVVVTSDTVVVSY
Ga0304729_10616252	3300028392	Freshwater Lake	MQLVVPRDKVEVTIDTVVVTKDTVVVKKDTVVFTRDTVVVT
Ga0304729_10943743	3300028392	Freshwater Lake	VVTRDEVLVTRDAVVVTRKNANRDTVVVTRDTEAVTRDSVVIT
Ga0304729_11142211	3300028392	Freshwater Lake	VVTRDAVVDTRDTVVVTRDTVVVTRDTVVVTGDIVVFY
Ga0304729_11291732	3300028392	Freshwater Lake	VVARDTVVVTREKDTVVVTRDTVVVTRDKATRDTVVVTRD
Ga0304729_11316291	3300028392	Freshwater Lake	DTVLVTRDAVVVTRDAVVVTRDTVVFTRDAVVVTR
Ga0304729_11424283	3300028392	Freshwater Lake	DTVVVTRDTVIVARDTVVVTRDKVVVTRYTVVVTRKSY
Ga0304729_11460043	3300028392	Freshwater Lake	VVVTRDTVVVTRDTVVVSRYTVVVTRDSLVVTEETVEVF
Ga0304729_11464932	3300028392	Freshwater Lake	VVTRDTVVVSKDTVVDTRDAVVVTRDTVVVTSNTIVVTRDN
Ga0304729_11473413	3300028392	Freshwater Lake	MIQYLVITRDTVVVTRDTVVVTSRDTVVVTRDTIVVVTGDTVVP
Ga0304729_11520351	3300028392	Freshwater Lake	TLVVTSDTVVVTRDTVVVTRDAVIVSSDTVEVTGDTE
Ga0304729_11578482	3300028392	Freshwater Lake	VVVTRDTVVVARDTVVVTRDAVVVTRDTVVDTRDTLLEIQ
Ga0304729_11584013	3300028392	Freshwater Lake	VVFTSDAVVVSRDAVVVTRDTVEVTRNTVLRNTVVVTECSSSY
Ga0304729_11678141	3300028392	Freshwater Lake	TRDSLVTTRDTVVVTRDTRDTVVVTRVKATRDIVLVTRFTVVY
Ga0304729_11687863	3300028392	Freshwater Lake	MATKDKVVVTRDIVEVAKDTVVVTRDTVVVTRDKVVVTRDTVK
Ga0304729_11741181	3300028392	Freshwater Lake	DSVVVTRDAVITTRDTVVVTRDAVINSRDTVVVLDMQ
Ga0304729_11741501	3300028392	Freshwater Lake	DAVVVTRVTATRRTVVVTRDTVVVTRDTVVYSGSY
Ga0304729_11768253	3300028392	Freshwater Lake	DTLXATRITVLVTRDTVVVTRDTVVVTKDAVVVTRCSSSY
Ga0304729_11839532	3300028392	Freshwater Lake	LRDTVVDNRDAVIVTRDTVVVTRYAVVLTRDAVVETRDA
Ga0304729_11871972	3300028392	Freshwater Lake	VVTTRDAVVVTRDTVVVPRDAVVVSRGTVVVARDAVVVSGE
Ga0304729_11915611	3300028392	Freshwater Lake	VAVTRDTEVDTRDTVVVTRDTVEITRDKATRNTVVVIRDKVTRDTVVELEMQ
Ga0304729_11954141	3300028392	Freshwater Lake	VVVTRDKIVVTRDAVVVTRNTANRVVVVVNRDTVGRY
Ga0304729_12127161	3300028392	Freshwater Lake	VVTRYAEVDTRYAVVVTRDTVVVSRDEVVVTRDTVVVTRDTVVGTRDTVV
Ga0304729_12159531	3300028392	Freshwater Lake	VVTKDEVVVNRDAVVVSRDTVVVTRYTVVVTRDTVVVNSDTVGSSF
Ga0304729_12248371	3300028392	Freshwater Lake	SVVVTRDAVVVTRDFVVVTRDFVVDSSDAVVVTRDAVVVTRLQS
Ga0304729_12289301	3300028392	Freshwater Lake	TRDTVVVTRDTVIVNRDTVVVTRDTVVVTRDTVVVARDT
Ga0304729_12382551	3300028392	Freshwater Lake	TRDTVVFTREKAIRDTVIVNRDTVVVTRETVVVTRETVVVTRY
Ga0304729_12464661	3300028392	Freshwater Lake	AEVVTRDTVVVTRDTVVVTRDSVVTTRDTVVFYRDAVVVTREK
Ga0304729_12592801	3300028392	Freshwater Lake	VVTRDAAVVTRDKVVFTRDSVVFARDTVVVTRDTVVI
Ga0304729_12671551	3300028392	Freshwater Lake	MVTRDKATSDTVVITRDAVVVTRDTVVVTRDAVVTTRDRVVVTRDKATRDKV
Ga0304729_12727882	3300028392	Freshwater Lake	VTRDTVVVTRDTVVVTRDAVVVARNAVVVPRDTVVLLEIRSSH
Ga0304729_12747571	3300028392	Freshwater Lake	DTVVVTRDAVVTTRDAVVGTRDAVVGTRDAVVVTRDAVVGTREMH