Metagenome / Metatranscriptome Family F102305

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F102305
Family Type	Metagenome / Metatranscriptome
Number of Sequences	101
Average Sequence Length	61 residues
Representative Sequence	MPRDPQNRLTDDGAQPVQPERPSGLVPEEVTEPGPEQNASDTDWLSMTTADPAFFLKDPGPE
Number of Associated Samples	47
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	89.11 %
% of genes near scaffold ends (potentially truncated)	11.88 %
% of genes from short scaffolds (< 2000 bps)	83.17 %
Associated GOLD sequencing projects	46
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.19

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (50.495 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (42.574 % of family members)
Environment Ontology (ENVO)	Unclassified (50.495 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (47.525 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 8.89% β-sheet: 0.00% Coil/Unstructured: 91.11%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.19
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.19
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF00463	ICL	42.57
PF04261	Dyp_perox	29.70
PF01274	Malate_synthase	2.97
PF03239	FTR1	1.98
PF03466	LysR_substrate	1.98
PF01061	ABC2_membrane	0.99
PF08734	GYD	0.99
PF00970	FAD_binding_6	0.99
PF13358	DDE_3	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG2224	Isocitrate lyase	Energy production and conversion [C]	42.57
COG2837	Periplasmic deferrochelatase/peroxidase EfeB	Inorganic ion transport and metabolism [P]	29.70
COG2225	Malate synthase	Energy production and conversion [C]	2.97
COG4274	Uncharacterized conserved protein, contains GYD domain	Function unknown [S]	0.99

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.50 %
All Organisms	root	All Organisms	49.50 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.50 %
cellular organisms	root	All Organisms → cellular organisms	49.50 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.50 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	48.51 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.50 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	35.64 %
Opisthokonta	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.50 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	34.65 %
Opisthokonta	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.50 %
Rubrobacteria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria	30.69 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.99 %
Opisthokonta	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.50 %
Rubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales	30.69 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.99 %
Opisthokonta	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.50 %
Rubrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	30.69 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	0.99 %
Opisthokonta	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.50 %
Rubrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter	25.74 %
unclassified Rubrobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae	3.96 %
Mycobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	0.99 %
Opisthokonta	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.50 %
Rubrobacter radiotolerans	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter radiotolerans	17.82 %
Rubrobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	3.96 %
Mycobacterium tuberculosis complex	species group	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex	0.99 %
Opisthokonta	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.50 %
Rubrobacter radiotolerans	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter radiotolerans	17.82 %
Rubrobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	3.96 %
Mycobacterium tuberculosis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis	0.99 %
Opisthokonta	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta	0.99 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_115070533	Not Available	523	Open in IMG/M
3300002568\|C688J35102_120007498	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	844	Open in IMG/M
3300005329\|Ga0070683_102219649	Not Available	527	Open in IMG/M
3300005535\|Ga0070684_101310150	Not Available	682	Open in IMG/M
3300009789\|Ga0126307_10095484	All Organisms → cellular organisms → Bacteria	2352	Open in IMG/M
3300009789\|Ga0126307_10784419	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter radiotolerans	769	Open in IMG/M
3300009840\|Ga0126313_10003595	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter radiotolerans	8960	Open in IMG/M
3300009840\|Ga0126313_10035678	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter radiotolerans	3440	Open in IMG/M
3300009840\|Ga0126313_10085325	All Organisms → cellular organisms → Bacteria	2296	Open in IMG/M
3300009840\|Ga0126313_10178061	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter radiotolerans	1622	Open in IMG/M
3300009840\|Ga0126313_10345409	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis	1171	Open in IMG/M
3300009840\|Ga0126313_10682579	Not Available	831	Open in IMG/M
3300009840\|Ga0126313_11492694	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	561	Open in IMG/M
3300010036\|Ga0126305_10004110	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter radiotolerans	6880	Open in IMG/M
3300010036\|Ga0126305_10049786	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter radiotolerans	2371	Open in IMG/M
3300010036\|Ga0126305_10527707	Not Available	789	Open in IMG/M
3300010036\|Ga0126305_10706089	Not Available	682	Open in IMG/M
3300010037\|Ga0126304_10205002	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter radiotolerans	1290	Open in IMG/M
3300010037\|Ga0126304_10286472	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter radiotolerans	1089	Open in IMG/M
3300010038\|Ga0126315_10020352	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3320	Open in IMG/M
3300010038\|Ga0126315_10353610	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter radiotolerans	916	Open in IMG/M
3300010039\|Ga0126309_10003096	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter radiotolerans	6209	Open in IMG/M
3300010039\|Ga0126309_10039678	All Organisms → cellular organisms → Bacteria	2198	Open in IMG/M
3300010039\|Ga0126309_10048404	All Organisms → cellular organisms → Bacteria	2023	Open in IMG/M
3300010039\|Ga0126309_10073401	All Organisms → cellular organisms → Bacteria	1700	Open in IMG/M
3300010039\|Ga0126309_10102135	All Organisms → cellular organisms → Bacteria	1478	Open in IMG/M
3300010039\|Ga0126309_10184502	All Organisms → cellular organisms → Bacteria	1144	Open in IMG/M
3300010039\|Ga0126309_10596844	Not Available	694	Open in IMG/M
3300010040\|Ga0126308_10000579	All Organisms → cellular organisms → Bacteria	12580	Open in IMG/M
3300010040\|Ga0126308_10540695	All Organisms → cellular organisms → Bacteria → Terrabacteria group	790	Open in IMG/M
3300010040\|Ga0126308_10579673	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter radiotolerans	764	Open in IMG/M
3300010044\|Ga0126310_10037110	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter radiotolerans	2610	Open in IMG/M
3300010044\|Ga0126310_10057382	All Organisms → cellular organisms → Bacteria	2193	Open in IMG/M
3300010044\|Ga0126310_10102504	All Organisms → cellular organisms → Bacteria	1737	Open in IMG/M
3300010044\|Ga0126310_11044654	Not Available	646	Open in IMG/M
3300010044\|Ga0126310_11254688	Not Available	597	Open in IMG/M
3300010045\|Ga0126311_10129439	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter radiotolerans	1772	Open in IMG/M
3300010045\|Ga0126311_11247807	Not Available	616	Open in IMG/M
3300010045\|Ga0126311_11420049	Not Available	580	Open in IMG/M
3300010045\|Ga0126311_11821407	All Organisms → cellular organisms → Eukaryota → Opisthokonta	516	Open in IMG/M
3300010145\|Ga0126321_1515068	Not Available	602	Open in IMG/M
3300011332\|Ga0126317_10709273	Not Available	519	Open in IMG/M
3300014487\|Ga0182000_10018479	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter radiotolerans	1812	Open in IMG/M
3300014487\|Ga0182000_10094923	Not Available	990	Open in IMG/M
3300014487\|Ga0182000_10401337	Not Available	608	Open in IMG/M
3300014487\|Ga0182000_10426420	Not Available	596	Open in IMG/M
3300014488\|Ga0182001_10551583	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	543	Open in IMG/M
3300017965\|Ga0190266_10406748	Not Available	757	Open in IMG/M
3300018432\|Ga0190275_10012558	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter radiotolerans	6329	Open in IMG/M
3300018432\|Ga0190275_10013880	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter radiotolerans	6059	Open in IMG/M
3300018432\|Ga0190275_10187435	All Organisms → cellular organisms → Bacteria	1944	Open in IMG/M
3300018432\|Ga0190275_10782963	Not Available	1016	Open in IMG/M
3300018432\|Ga0190275_12378052	Not Available	608	Open in IMG/M
3300018432\|Ga0190275_12795855	Not Available	564	Open in IMG/M
3300018432\|Ga0190275_13287569	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	523	Open in IMG/M
3300018432\|Ga0190275_13442596	Not Available	512	Open in IMG/M
3300018465\|Ga0190269_10096906	Not Available	1438	Open in IMG/M
3300018465\|Ga0190269_10298381	Not Available	938	Open in IMG/M
3300018465\|Ga0190269_11527485	Not Available	552	Open in IMG/M
3300018466\|Ga0190268_10008910	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter	2699	Open in IMG/M
3300018466\|Ga0190268_10254837	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter	1012	Open in IMG/M
3300018466\|Ga0190268_10364381	Not Available	908	Open in IMG/M
3300018469\|Ga0190270_12254470	Not Available	605	Open in IMG/M
3300018476\|Ga0190274_10588241	Not Available	1136	Open in IMG/M
3300018481\|Ga0190271_10515051	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter	1309	Open in IMG/M
3300018481\|Ga0190271_13095663	Not Available	558	Open in IMG/M
3300018920\|Ga0190273_11370090	Not Available	615	Open in IMG/M
3300018920\|Ga0190273_11433229	Not Available	605	Open in IMG/M
3300018920\|Ga0190273_12123010	Not Available	525	Open in IMG/M
3300019377\|Ga0190264_10022606	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter	2146	Open in IMG/M
3300019767\|Ga0190267_10130063	Not Available	1062	Open in IMG/M
3300019767\|Ga0190267_10177776	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter	968	Open in IMG/M
3300019767\|Ga0190267_10307622	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter	826	Open in IMG/M
3300019767\|Ga0190267_11177565	Not Available	559	Open in IMG/M
3300028705\|Ga0307276_10010128	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter radiotolerans	1658	Open in IMG/M
3300028705\|Ga0307276_10026461	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter	1176	Open in IMG/M
3300028707\|Ga0307291_1116896	Not Available	670	Open in IMG/M
3300028722\|Ga0307319_10085417	Not Available	1005	Open in IMG/M
3300028744\|Ga0307318_10098000	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	991	Open in IMG/M
3300028771\|Ga0307320_10183068	Not Available	817	Open in IMG/M
3300028778\|Ga0307288_10255508	Not Available	688	Open in IMG/M
3300028872\|Ga0307314_10275772	Not Available	529	Open in IMG/M
3300030510\|Ga0268243_1184748	Not Available	515	Open in IMG/M
3300030903\|Ga0308206_1089949	Not Available	673	Open in IMG/M
3300030903\|Ga0308206_1140182	Not Available	574	Open in IMG/M
3300031091\|Ga0308201_10006433	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter radiotolerans	1954	Open in IMG/M
3300031091\|Ga0308201_10079201	Not Available	901	Open in IMG/M
3300031091\|Ga0308201_10276821	Not Available	588	Open in IMG/M
3300031091\|Ga0308201_10399606	Not Available	516	Open in IMG/M
3300031092\|Ga0308204_10025984	Not Available	1257	Open in IMG/M
3300031092\|Ga0308204_10091778	Not Available	822	Open in IMG/M
3300031548\|Ga0307408_101042537	All Organisms → cellular organisms → Bacteria	756	Open in IMG/M
3300031852\|Ga0307410_10584255	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	930	Open in IMG/M
3300031903\|Ga0307407_10111996	Not Available	1715	Open in IMG/M
3300032126\|Ga0307415_100979423	Not Available	785	Open in IMG/M
3300032159\|Ga0268251_10451108	Not Available	567	Open in IMG/M
3300034007\|Ga0334936_012645	Not Available	1862	Open in IMG/M
3300034132\|Ga0334915_023844	All Organisms → cellular organisms → Bacteria	1190	Open in IMG/M
3300034132\|Ga0334915_027618	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter	1112	Open in IMG/M
3300034135\|Ga0334929_030677	Not Available	1134	Open in IMG/M
3300034393\|Ga0334914_056176	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	534	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.05%
Host-Associated	Host-Associated	4.95%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	93.07%
Plants	Host-Associated → Plants	4.95%
Aquatic	Environmental → Aquatic	1.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	93.07%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.96%
Freshwater	Environmental → Aquatic → Freshwater	1.98%
Phylloplane	Host-Associated → Plants → Phylloplane	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	86.14%
Soil Crust	Environmental → Terrestrial → Soil → Soil Crust	3.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.96%
Loam	Environmental → Terrestrial → Soil → Loam	2.97%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	1.98%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	84.16%
Unclassified	Environmental → Terrestrial → Soil → Soil Crust → Unclassified	3.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.96%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	1.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.98%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.99%
Desert	Environmental → Terrestrial → Soil → Unclassified → Desert	0.99%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.99%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	42.57%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	35.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.94%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	3.96%
Hypolithic Biocrust	Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Hypolithic Biocrust	2.97%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	1.98%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.99%
Sub-Biocrust Soil	Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil	0.99%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.99%
Biocrust	Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Biocrust	0.99%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	0.99%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010145	Soil microbial communities from Hawaii, USA to study soil gas exchange rates - KP-HI-INT metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300011332	Soil microbial communities from California, USA to study soil gas exchange rates - SR-CA-SC2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300014487	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG	Environmental	Open in IMG/M
3300014488	Bulk soil microbial communities from Mexico - San Felipe (SF) metaG	Environmental	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300018920	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 IS	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300028705	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_115	Environmental	Open in IMG/M
3300028707	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_148	Environmental	Open in IMG/M
3300028722	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_368	Environmental	Open in IMG/M
3300028744	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_367	Environmental	Open in IMG/M
3300028771	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369	Environmental	Open in IMG/M
3300028778	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_142	Environmental	Open in IMG/M
3300028872	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_204	Environmental	Open in IMG/M
3300030510	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG (v2)	Environmental	Open in IMG/M
3300030903	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_369 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031091	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_355 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031092	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_367 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300031903	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1	Host-Associated	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300032159	Agave microbial communities from Guanajuato, Mexico - As.Ma.e (v2)	Host-Associated	Open in IMG/M
3300034007	Biocrust microbial communities from Mojave Desert, California, United States - 32SMC	Environmental	Open in IMG/M
3300034132	Biocrust microbial communities from Mojave Desert, California, United States - 11HMC	Environmental	Open in IMG/M
3300034135	Biocrust microbial communities from Mojave Desert, California, United States - 25HNC	Environmental	Open in IMG/M
3300034393	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 10HMS	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1150705332	3300000956	Soil	MPRDPQSRLTDDEGVEPVQPERPSGIVPEEMTEPGAKQNASDTDWLSMTTADPAFFLKDPGSE*
C688J35102_1200074982	3300002568	Soil	MASDPQSRLAGRDVQPAQPERPSGIVPEELTEPGAKQDASDTDWLSMSTADPAFFLKDSGPE*
Ga0070683_1022196492	3300005329	Corn Rhizosphere	MARDPQSRLTDDGVQPETSSGFALEEVAEPDTKHNASETDWLSMTTADPAFFLK
Ga0070684_1013101502	3300005535	Corn Rhizosphere	MARDPQNRLTDDGVQPETSSGFALEEVAEPDTKHNASETDWLSMTTADPAFFLKDPEP*
Ga0126307_100954842	3300009789	Serpentine Soil	MARDQQSRLTADDGAQPETSSGVAPEEATGPVAKQDTSDADWLSMTTADPAFFLKEAGFE
Ga0126307_107844192	3300009789	Serpentine Soil	MVRDPQDRPTNDGVQPERPSGLVPEDIPGQDTKHNTPDTDWLSMTTTDPAFFLKDSNPD*
Ga0126313_100035959	3300009840	Serpentine Soil	MPRDPRNRLTDEGAQPLQPEIPSGLVPEEIAEPSRKQNATDTDWLSMTTADPAFFLNDTGPE*
Ga0126313_100356784	3300009840	Serpentine Soil	MPRDPQNRLTDDGAQPVHPERPSGIVPEEVTEPGPEQNASDTDWLSMTTADPAFFLKDPGPE*
Ga0126313_100853252	3300009840	Serpentine Soil	MARDPQSRLTDDGVQPETSSGFALEEVAEPDTKHNASETDWLSMTTADPAFFLKDPEPE*
Ga0126313_101780612	3300009840	Serpentine Soil	MVRDPQDRPTNDGVQPERPSGLVPEDIPGQDTKHNTPDTDWLSMTTTDPAFFLKDSDPD*
Ga0126313_103454091	3300009840	Serpentine Soil	MARDPQGRLTDDGKQPQNSPGLVPEQVVEPDTKQNATDMDWLSMTTADPAFFLKDTGAE*
Ga0126313_106825791	3300009840	Serpentine Soil	MARDPQGRLTDYGVQPVQPERPAGLVPEEIAEPDTKQNVPDTDWLSMTTADPAFFLKDSDSE*
Ga0126313_114926942	3300009840	Serpentine Soil	MPRDQQSRLTDDGAQTDQPERPSGLVPEEVTEPGTKQSAADADWLSMATADLALFLKDLGS*
Ga0126305_100041102	3300010036	Serpentine Soil	MVRDPQDRPTNDGVQPERPSGLVPEDIPGQDTKHNNPDTDWLSMTTTDPAFFLKDSNPD*
Ga0126305_100497864	3300010036	Serpentine Soil	MKEGHMARDPRNRLTDDGAQPVHPERPSGIVPEEVTEPGPEQNASDTDWLSMTTADPAFFLKDPGPE*
Ga0126305_105277071	3300010036	Serpentine Soil	MARDPKGRPTNDGAQSESSPGLVPEQVGDPDTKHNASDADWLSMTTADPAFFLKDSNPD*
Ga0126305_107060892	3300010036	Serpentine Soil	MPGVPGIPPEEEEEIMPIDPKSRVTDDGTQPAGRSSGLAPEEVEEPGRKQDSADMDWLSMATADPALFLKDTGSE*
Ga0126304_102050022	3300010037	Serpentine Soil	MARDPQGRLTFDGVQPVQPEGPSGLVPEELTEPDTKQNAPDADWLSMTTADPAFFLKDSDSE*
Ga0126304_102864722	3300010037	Serpentine Soil	MMRDPQDRPTNDGVQPERPSGLVPEDIPGQDTKHNNPDTDWLSMTTTDPAFFLKDSDPD*
Ga0126315_100203523	3300010038	Serpentine Soil	MPDEPLSHVTDDGAQPVRPERAPGLAPEEVAEPGRKRSIADTDWLSMATADPAHFLKDLRPD*
Ga0126315_103536102	3300010038	Serpentine Soil	MVRDPQDRPTNDGVQPERPSGLVPDDIPGQDTKHNTPDTDWLSMTTTDPAFFLKDSDPD*
Ga0126309_100030962	3300010039	Serpentine Soil	MPRDPKSRVTDDAAQPERPSGIAPEEVAEPDRKQNAADADWLFMATADPALFLKDSGSE*
Ga0126309_100396783	3300010039	Serpentine Soil	MPRDPQSRLTDDGAQPLQPEGPSGLVPEEIADPVQERTTVDLDWLSMATADPAYFLKDTGFE*
Ga0126309_100484042	3300010039	Serpentine Soil	MPRDPQSRVTDDAAQPERPSGIAPEEVAEPGRKQNAADSDWLSMATADPALFLKDTSSE*
Ga0126309_100734012	3300010039	Serpentine Soil	MPRDPQSRLTDEGAQPLQPEMPSGFAPEEVAEPPRKQNAADTDWLSMTTADPAFFLKDTGPE*
Ga0126309_101021352	3300010039	Serpentine Soil	MPRDPRSRLTDDGAQPLQPEIPSGLAPEEIAEPLRKQNATDTDWLSMSTADPAFFLNDTGPE*
Ga0126309_101845022	3300010039	Serpentine Soil	MPRDPQNRLTDDGAQPVQPERPSGLVPEEVTEPGPEQNDSDTDWLSMTTADPAFFLKDPGPE*
Ga0126309_105968442	3300010039	Serpentine Soil	MPRDPQSRLTDEGALPLQPESRSGLVPEEVVEPPRKQNATDTDWLSMTTADPAFFLKDTGPE*
Ga0126308_100005793	3300010040	Serpentine Soil	MPRDSRNRLTDEGAQPLQPEIPSGLVPEEIAEPSRKQNATDTDWLSMTTADPAFFLNDTGPE*
Ga0126308_105406953	3300010040	Serpentine Soil	MPGVPGIPPEEEEEIMPIDPKSRVTDDGTQPAGRPSGLAPEEVEEPGRKQDSADMDWLSMATADPALFLKDTGSE*
Ga0126308_105796732	3300010040	Serpentine Soil	MARDPQGRLTDDGVQSKNSPDLVPEQVAEPDTKQNAPDTDWLSMTTSDPAFFLKDSEPE*
Ga0126310_100371104	3300010044	Serpentine Soil	MPRDPQNRLTDDGAQPVHPERPSGIVPEEVTEPGPEQNASDTDWLSMTTADPAFFLKDPGPGRDKYA*
Ga0126310_100573822	3300010044	Serpentine Soil	MPRDPQSRLTDEGAQQVKPERPSGLAHDEVMEPGTRQNPADTDWLTMTTADPAFFLKDSNSE*
Ga0126310_101025042	3300010044	Serpentine Soil	MMRDPQDRPTNDGVQPERPSGLVPEDIPGQDTKHNTPDTDWLSMTTTDPAFFLKDSDPD*
Ga0126310_110446541	3300010044	Serpentine Soil	MKEGHMTRDPRNRLTDDGAQPVQQEGPSGLVPKELAEPIQKRTGADPDWSTMVTADPAFFLKDASPE*
Ga0126310_112546882	3300010044	Serpentine Soil	MPKDPQGRPTWEGVQPVQPERPSGLAPEEVAEPDQKRNTADADWQAMATAGPALFLKGPVSE*
Ga0126311_101294392	3300010045	Serpentine Soil	MARDPQSRLTDDGVQPETSSGFALEEVAEPDTKHSASETDWLSMTTPDPAFFLKESSFE*
Ga0126311_112478072	3300010045	Serpentine Soil	MPRDQQSRLTDDGAQTDQPERPSGLIPEEVTEPGTKQSAADADWLSMATADLALFLKDLGS*
Ga0126311_114200491	3300010045	Serpentine Soil	MPRDPQSRLTDEGAQQVKPERPSGLAPEEVMEPGTRQNPADTDWLTMTTADPAFFLKDSDSE*
Ga0126311_118214072	3300010045	Serpentine Soil	LPRDPQRRLSDDGAQPENVPALALEEVGEAVNKQDATDTDWLSMTTADPAFFLKDT
Ga0126321_15150681	3300010145	Soil	MPRDPQSRLTDEGAQQVKPERPSGLAPEEVMEPGTRQNPADTDWLRMTTPDPAFFLKDSNSE*
Ga0126317_107092732	3300011332	Soil	MARDQQGRLTEDGVQSKSSPGLASEQVAEPDTKQNAPDTDWLSMTTADPAFFLKDSEPE*
Ga0182000_100184793	3300014487	Soil	LSAKEECMARDPRGRPTDDGAQPFEQETPSGLVPEEAAEPIQKRTSADPDWLTMATADPAFFLKEPGPP*
Ga0182000_100949231	3300014487	Soil	DGVQPESSPGLVSEQVADSDTKHNASDADWLSMTTADPAFFLKDPTSE*
Ga0182000_104013371	3300014487	Soil	MARDPHNRLTDDGTQPVRPEKTSKLVPEEVSEPGAKQGATDTDWLSMSTADPAFFLKDLGSE*
Ga0182000_104264201	3300014487	Soil	MPRDPQSRLTDESAQPLQPEMPSGLVPEEVAEPSRKQNATDTDWLSMTTADPAFFLNYTGPE*
Ga0182001_105515831	3300014488	Soil	MARDPRGRPTDDGAQPVQQETPSGLIPEEVAEPIQKRTSADPDWLTMATADPAFFLKEPGPP*
Ga0190266_104067481	3300017965	Soil	MPIDPQNRLTGENVQPVQPERPSGLVPEDVAEPDQKLRPAETDWLSMTTADPAFFLKESGSE
Ga0190275_100125583	3300018432	Soil	MVRDPRSRPGDYGAGQETPSELAPDEMTEPDTKHDFPDADWLSMTAADPAFFLKDSGSE
Ga0190275_100138804	3300018432	Soil	VPRDPRNLVTGDATQPVVQEGPSGLAPEEVAEPGRKQKAADADWLSMATADPALSLKDPEAE
Ga0190275_101874352	3300018432	Soil	MSRDPQGRLTDDGAQPEMSSGPVPEKLTEPGKKQNISDTDWLSMTTADPAFFLKESGSE
Ga0190275_107829632	3300018432	Soil	MSRDPQGQLTDDGAQPETSSGLAPEEVTEPGAKQNISDTDWLSMTTADPAFFLKDSDSE
Ga0190275_123780522	3300018432	Soil	MARDPQSRPTDDGVQPETSSGTAPEEMTEPGAKQNAPDTDWLSMTTADPAFFLKDSGSE
Ga0190275_127958551	3300018432	Soil	RDPQSRPTDDGVQPETSSGTAPEEMTEPGAKQNAPDMDWLSMTTADPAFFLKDSGSE
Ga0190275_132875691	3300018432	Soil	MPRDPQDRLTEDGTQPVQPERPSGLAPEEVAEPGRKQNVADADWLSMATADPALFLKDSGFE
Ga0190275_134425961	3300018432	Soil	MPTDPQGRLTEDGAQPVQPERPSGLAPEEVAEPARKQNVADADWLSMATADPALFLKDSGSE
Ga0190269_100969062	3300018465	Soil	MARDPQSRLTDDGAQPESPSGIAPEEVAEPAAKQSADADWLSMTTADPAFFLKDTGSD
Ga0190269_102983812	3300018465	Soil	MARDQQIRLTDDGVQSERSSGLVPEEIAEPDTKQKASDTDWLSMSTADPAFFLKDSNPD
Ga0190269_115274852	3300018465	Soil	MPRDPQSRPTDDGAQPVKPAGIAPDEVAEQGAKRNTDDGDWLSMTTADPAFFLKDSGSE
Ga0190268_100089102	3300018466	Soil	MPKDPRNRLTDEGAQPLQPEMPSGLVPDEIAEPSRKQNATDTDWLSMTTADPAFFLNDTGPE
Ga0190268_102548372	3300018466	Soil	MPRDPQGRLTEDGAQPVQPERSSGLAPEEVAELGRKQNAADADWLSMATADPALFLKDSGSE
Ga0190268_103643812	3300018466	Soil	MARDPQIRLTDDGVQSERSSGLVPEEIAEPDTKQKASDTDWLSMSTADPAFFLKDSNPD
Ga0190270_122544701	3300018469	Soil	MARDPQGRLTDDGVKPETSSGFAPEEVTEPGAKQNISDTDWLSMTTADPAFFLKDSEPE
Ga0190274_105882411	3300018476	Soil	MPRDPQNRLTDDGVQPVQPERPSGLAPEEVAEPGRKQNVADADWLSMATADPALFLKDSGFE
Ga0190271_105150512	3300018481	Soil	MSRDPQGQLTDDGAQPETSSGLAPEEVTEPGAKQNISDTDWLSMTTADPAFFLKDSEPE
Ga0190271_130956631	3300018481	Soil	MPRDPQDRLTEDGAQPVQPERPSGLAPEEVAEPARKQNAADADWLSMATADPALFLKDSGSE
Ga0190273_113700901	3300018920	Soil	MPRDPQNRLTDDGAQPVQPERPSGLVPEEVTEPGPEQNASDTDWLSMTTADPAFFLKDPGPE
Ga0190273_114332292	3300018920	Soil	MPRDPQSRLTDDGAQPLQPEGPSGLVPEEIADPVQERTTVDLDWLSMATADPAYF
Ga0190273_121230101	3300018920	Soil	MPTDPQGRLTDDGAQPENSSGLAPEEVAEPARKQNAADADWLSMATADPALFLKDLGSE
Ga0190264_100226062	3300019377	Soil	MPTDPQGRLTDDGAQPVQPERPSGLAPEEVAEPGRKQNAADADWLSMATADPALFLKDSGSE
Ga0190267_101300632	3300019767	Soil	MARDPQSRLTDDGVQPETSSGFALEEVAEPDTKHNASETDWLSMTTADPAFFLKDLEP
Ga0190267_101777762	3300019767	Soil	MPIDPQNRLTGENVQPVQPERPSGLVPEDVAEPDQKLRPAETDWLSMATADPAFFLKDSNPE
Ga0190267_103076222	3300019767	Soil	MARDPQGRLTDDGVQSKNSPDLVPEQVAEPDTKQNAPDTDWLSMTTSDPAFFLKDSEPE
Ga0190267_111775652	3300019767	Soil	MPRDPRSRPTDEGAQPLQPEIPSGLVPEEIAEPSRKQNATDTDWLSMTTADPAFFLNDTGPE
Ga0307276_100101282	3300028705	Soil	MARDPRSRLTDDGAQPVQQEWPSGLVPEEVAEPGAKQNASDMDWLSMSTADPAFFLKDSGSE
Ga0307276_100264612	3300028705	Soil	MPRDPQSRLTDEGAQQVKPERPSGLAPEEVMEPGTRQNPADTDWLTMTTPDPAFFLKDSNSE
Ga0307291_11168962	3300028707	Soil	MPRDPQNRLTDDGAQPVHPERPSGLVPEEVTEPGPEQNASDTDWLSMTTADPAFFLKDPGPE
Ga0307319_100854172	3300028722	Soil	MPRDPQSRLTDEDAQQVKPERPSGLAPEEVMEPGTRQNPADTDWLTMTTPDPAFFLKDSNSE
Ga0307318_100980001	3300028744	Soil	MPSDPQKRLTGEGVQPAQPERPSGLVPEDVGEPDQKRNTADADWLSMTTADPAFFLKDSNPE
Ga0307320_101830681	3300028771	Soil	MPRDPQSRPTDDGAQQETPAGIAPDEVAEQGAKRNTDDGDWLSMTTADPAFFLKDSGSE
Ga0307288_102555081	3300028778	Soil	GRLTDDGAQLEMPSGPVPEKLTEPGKKQNTSDADWLSMTTADPAFFLKESGSE
Ga0307314_102757721	3300028872	Soil	EEVSMSIDPQGRLTDDGAQLEMPSGPVPEKLTEPGKKQNTSDADWLSMTTADPAFFLKESGSE
Ga0268243_11847481	3300030510	Soil	MASDPQSRLAGRDVQPAQPERPSGIVPEELTEPGAKQDASDTDWLSMSTADPAFFLKDSGPE
Ga0308206_10899492	3300030903	Soil	FRLPLAKEERMPRDPQSRPTDDGAQPETPAGIAPDEVAEQGAKRNTDDGDWLSMTTADPAFFLKDSGSE
Ga0308206_11401822	3300030903	Soil	MPRDPQSRLTGENAQPERPSGLVPEDVAEQDAKQNASDTDWLSMTTADPAFFLKESGSE
Ga0308201_100064332	3300031091	Soil	MARDPRSRLTDDGAQPVQQEWPSGLVPEEVAEPGAKQNASDMDWLSMSTADPAFFLKDSGPE
Ga0308201_100792011	3300031091	Soil	MSRDPQGRLTDDGAQLEMPSGPVPEKLTEPGKKQNTSDADWLSMTTADPAFFLKESGSE
Ga0308201_102768212	3300031091	Soil	MPRDPQSRPADDGAQPETPAGIAPDEVAEQGAKRNTDDGDWLSMTTADPAFFLKDSGSE
Ga0308201_103996061	3300031091	Soil	MARDPRGRLTEDGVQPERPSGLVPEEIAEPDTKQNAADRDWLSMSTADPAFFLKDSEPE
Ga0308204_100259842	3300031092	Soil	MSIDPQGRLTDDGAQLEMPSGPVPEKLTELGKKQNTSDADWLSMTTADPAFFLKESGSE
Ga0308204_100917781	3300031092	Soil	MPRDPQSRLTDDGAQPVQPERPSGLVPEEVAEPGTKQNASDADWLSMTTADPAFFLNDPVSG
Ga0307408_1010425373	3300031548	Rhizosphere	MPRDPQSRGADDGTQPVQPAGRPSGLAPEEVEEPGRKQDDADWLSMAAADPALFLKDSGS
Ga0307410_105842551	3300031852	Rhizosphere	MPRDPQSRGADDGTQPVQPAGRPSGLAPEEVEEPGRKQDDADWLSMATADPALFLKDSGS
Ga0307407_101119962	3300031903	Rhizosphere	MPRDPQSRGADDGTQPVQPAGRPSGLAPEEVEEPGRKQDDADWLSMATAD
Ga0307415_1009794231	3300032126	Rhizosphere	VARDPQSRLTDDGVQSERPSGLVPEEIAEPDTKQNAPDTDWLSMTTADPAFFLKDSEPE
Ga0268251_104511082	3300032159	Agave	MPRDPQSQLTDEGAQPVQPERLSGPAPEEVMEPGTKQNAADADWLTMSTADPAFFLKDSNSE
Ga0334936_012645_155_343	3300034007	Biocrust	MTRDAQTRVTDDAAQPVQPERPSGIAPEEVAEPTRKQNAADADWLSMATADPALFLKDTSSE
Ga0334915_023844_510_698	3300034132	Hypolithic Biocrust	MTRDPRNRLTDDGAQPVQQEGPSGLVPEELAEPIQKRTGADPDWSTMVTADPAFFLKDASPE
Ga0334915_027618_624_803	3300034132	Hypolithic Biocrust	MARDPQGRLTSNGVHPEGPSGLVPDGIPEPDTKHDAPDTDWLSMTTADPAFFLKDPGSE
Ga0334929_030677_50_238	3300034135	Hypolithic Biocrust	MPRDPQGRLTDEGTQPVQRERPSGLVPEGVTELDQKRYTSEADWLSMTTADPAFFLTDTGSE
Ga0334914_056176_195_380	3300034393	Sub-Biocrust Soil	MPRDPQSRPTDGAQPVQPERPSGLPPEEVAEPDQKRNTADADWLSMATADPALYLKDQGK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F102305

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences