Metagenome Family F102298

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F102298
Family Type	Metagenome
Number of Sequences	101
Average Sequence Length	47 residues
Representative Sequence	MDTFLKIFIVMVLALAFIGWLADRRAAAKRSDVTPGLSLLPGDIKYES
Number of Associated Samples	75
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	32.67 %
% of genes near scaffold ends (potentially truncated)	96.04 %
% of genes from short scaffolds (< 2000 bps)	92.08 %
Associated GOLD sequencing projects	67
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.42

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (74.257 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (36.634 % of family members)
Environment Ontology (ENVO)	Unclassified (65.347 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (61.386 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 47.37% β-sheet: 0.00% Coil/Unstructured: 52.63%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.42
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.42
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF06078	DUF937	11.88
PF14235	DUF4337	9.90
PF04226	Transgly_assoc	3.96
PF04392	ABC_sub_bind	2.97
PF13548	DUF4126	1.98
PF00440	TetR_N	0.99
PF00107	ADH_zinc_N	0.99
PF04228	Zn_peptidase	0.99
PF11319	VasI	0.99
PF02547	Queuosine_synth	0.99
PF00291	PALP	0.99
PF01266	DAO	0.99
PF00135	COesterase	0.99
PF00912	Transgly	0.99
PF03330	DPBB_1	0.99
PF13367	PrsW-protease	0.99
PF00072	Response_reg	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG3753	Uncharacterized conserved protein YidB, DUF937 family	Function unknown [S]	11.88
COG2261	Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family	General function prediction only [R]	3.96
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	2.97
COG0744	Penicillin-binding protein 1B/1F, peptidoglycan transglycosylase/transpeptidase	Cell wall/membrane/envelope biogenesis [M]	0.99
COG0809	S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase)	Translation, ribosomal structure and biogenesis [J]	0.99
COG2272	Carboxylesterase type B	Lipid transport and metabolism [I]	0.99
COG2321	Predicted metalloprotease	General function prediction only [R]	0.99
COG4953	Membrane carboxypeptidase/penicillin-binding protein PbpC	Cell wall/membrane/envelope biogenesis [M]	0.99
COG5009	Membrane carboxypeptidase/penicillin-binding protein	Cell wall/membrane/envelope biogenesis [M]	0.99

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	74.26 %
Unclassified	root	N/A	25.74 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	74.26 %
Unclassified	root	N/A	25.74 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	74.26 %
Unclassified	root	N/A	25.74 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	58.42 %
Unclassified	root	N/A	25.74 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.99 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	54.46 %
Unclassified	root	N/A	25.74 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.99 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	44.55 %
Unclassified	root	N/A	25.74 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	1.98 %
Candidatus Acidoferrales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.74 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	21.78 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	8.91 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	5.94 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.98 %
Candidatus Acidoferrum	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum	0.99 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.74 %
unclassified Hyphomicrobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae	21.78 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	8.91 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4.95 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.98 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	0.99 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.74 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	21.78 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	8.91 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	2.97 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.98 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.99 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	0.99 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.74 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	21.78 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	8.91 %
Bradyrhizobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	1.98 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.98 %
Bradyrhizobium sp. NAS80.1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. NAS80.1	0.99 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.99 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	0.99 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.99 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000597\|AF_2010_repII_A1DRAFT_10026481	All Organisms → cellular organisms → Bacteria → Proteobacteria	1576	Open in IMG/M
3300000597\|AF_2010_repII_A1DRAFT_10031558	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1428	Open in IMG/M
3300004152\|Ga0062386_101515982	All Organisms → cellular organisms → Bacteria → Proteobacteria	559	Open in IMG/M
3300004633\|Ga0066395_10050663	All Organisms → cellular organisms → Bacteria	1836	Open in IMG/M
3300005332\|Ga0066388_100687231	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1632	Open in IMG/M
3300005332\|Ga0066388_101528837	Not Available	1169	Open in IMG/M
3300005366\|Ga0070659_100893086	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	776	Open in IMG/M
3300005713\|Ga0066905_101451794	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	623	Open in IMG/M
3300005713\|Ga0066905_102092976	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	526	Open in IMG/M
3300005764\|Ga0066903_100331082	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2442	Open in IMG/M
3300005764\|Ga0066903_103856781	All Organisms → cellular organisms → Bacteria	805	Open in IMG/M
3300005764\|Ga0066903_105121919	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	694	Open in IMG/M
3300006028\|Ga0070717_11880440	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	540	Open in IMG/M
3300006041\|Ga0075023_100386485	All Organisms → cellular organisms → Bacteria → Proteobacteria	602	Open in IMG/M
3300009792\|Ga0126374_10339132	Not Available	1025	Open in IMG/M
3300010046\|Ga0126384_12026181	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	551	Open in IMG/M
3300010358\|Ga0126370_10304283	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	1266	Open in IMG/M
3300010360\|Ga0126372_11368537	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	739	Open in IMG/M
3300010376\|Ga0126381_105000958	Not Available	508	Open in IMG/M
3300010398\|Ga0126383_13314688	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	526	Open in IMG/M
3300010863\|Ga0124850_1089173	Not Available	898	Open in IMG/M
3300012971\|Ga0126369_10458840	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1325	Open in IMG/M
3300016270\|Ga0182036_10810783	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	763	Open in IMG/M
3300016270\|Ga0182036_11540219	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	559	Open in IMG/M
3300016294\|Ga0182041_10600126	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	967	Open in IMG/M
3300016319\|Ga0182033_10421163	Not Available	1133	Open in IMG/M
3300016341\|Ga0182035_10936975	Not Available	765	Open in IMG/M
3300016387\|Ga0182040_10755178	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	799	Open in IMG/M
3300016387\|Ga0182040_10872933	Not Available	745	Open in IMG/M
3300016404\|Ga0182037_12002736	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	520	Open in IMG/M
3300016422\|Ga0182039_10838338	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	818	Open in IMG/M
3300016422\|Ga0182039_11286856	All Organisms → cellular organisms → Bacteria	662	Open in IMG/M
3300016422\|Ga0182039_11613225	Not Available	592	Open in IMG/M
3300016445\|Ga0182038_10422473	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1122	Open in IMG/M
3300016445\|Ga0182038_10974961	Not Available	750	Open in IMG/M
3300017970\|Ga0187783_10191363	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	1504	Open in IMG/M
3300017970\|Ga0187783_10590526	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	804	Open in IMG/M
3300017973\|Ga0187780_11456041	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	506	Open in IMG/M
3300017974\|Ga0187777_11095772	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	579	Open in IMG/M
3300017975\|Ga0187782_11591508	Not Available	516	Open in IMG/M
3300017999\|Ga0187767_10356658	Not Available	516	Open in IMG/M
3300018058\|Ga0187766_11283761	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	533	Open in IMG/M
3300018060\|Ga0187765_10262951	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	1021	Open in IMG/M
3300018060\|Ga0187765_11254316	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	522	Open in IMG/M
3300021168\|Ga0210406_10674679	All Organisms → cellular organisms → Bacteria	799	Open in IMG/M
3300021401\|Ga0210393_11317424	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	579	Open in IMG/M
3300027703\|Ga0207862_1257910	Not Available	510	Open in IMG/M
3300031564\|Ga0318573_10626092	Not Available	579	Open in IMG/M
3300031713\|Ga0318496_10169656	All Organisms → cellular organisms → Bacteria	1195	Open in IMG/M
3300031719\|Ga0306917_10726941	All Organisms → cellular organisms → Bacteria	779	Open in IMG/M
3300031724\|Ga0318500_10349646	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	730	Open in IMG/M
3300031736\|Ga0318501_10772085	Not Available	531	Open in IMG/M
3300031744\|Ga0306918_10719151	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	781	Open in IMG/M
3300031763\|Ga0318537_10015920	Not Available	2582	Open in IMG/M
3300031780\|Ga0318508_1082588	Not Available	880	Open in IMG/M
3300031795\|Ga0318557_10214037	All Organisms → cellular organisms → Bacteria	880	Open in IMG/M
3300031796\|Ga0318576_10511764	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	566	Open in IMG/M
3300031798\|Ga0318523_10057807	Not Available	1839	Open in IMG/M
3300031833\|Ga0310917_10298928	All Organisms → cellular organisms → Bacteria	1088	Open in IMG/M
3300031833\|Ga0310917_10512040	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. NAS80.1	816	Open in IMG/M
3300031845\|Ga0318511_10020757	All Organisms → cellular organisms → Bacteria	2401	Open in IMG/M
3300031846\|Ga0318512_10234407	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	903	Open in IMG/M
3300031879\|Ga0306919_10285824	Not Available	1248	Open in IMG/M
3300031890\|Ga0306925_10873064	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	927	Open in IMG/M
3300031890\|Ga0306925_11135288	All Organisms → cellular organisms → Bacteria	787	Open in IMG/M
3300031890\|Ga0306925_11857212	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	575	Open in IMG/M
3300031893\|Ga0318536_10108242	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	1398	Open in IMG/M
3300031897\|Ga0318520_10005045	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5227	Open in IMG/M
3300031910\|Ga0306923_12366895	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	528	Open in IMG/M
3300031941\|Ga0310912_10370156	Not Available	1114	Open in IMG/M
3300031942\|Ga0310916_10102754	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	2299	Open in IMG/M
3300031946\|Ga0310910_10756281	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	767	Open in IMG/M
3300031946\|Ga0310910_10903455	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	693	Open in IMG/M
3300031947\|Ga0310909_10187379	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	1715	Open in IMG/M
3300031954\|Ga0306926_10814143	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1125	Open in IMG/M
3300031954\|Ga0306926_11910949	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	670	Open in IMG/M
3300031954\|Ga0306926_12817820	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	525	Open in IMG/M
3300031954\|Ga0306926_12928638	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	512	Open in IMG/M
3300032001\|Ga0306922_10813142	All Organisms → cellular organisms → Bacteria → Proteobacteria	976	Open in IMG/M
3300032001\|Ga0306922_11285980	Not Available	740	Open in IMG/M
3300032035\|Ga0310911_10645490	Not Available	614	Open in IMG/M
3300032039\|Ga0318559_10018579	Not Available	2629	Open in IMG/M
3300032043\|Ga0318556_10053187	All Organisms → cellular organisms → Bacteria	1964	Open in IMG/M
3300032051\|Ga0318532_10178866	Not Available	753	Open in IMG/M
3300032059\|Ga0318533_10386645	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1021	Open in IMG/M
3300032060\|Ga0318505_10328282	Not Available	722	Open in IMG/M
3300032063\|Ga0318504_10021531	All Organisms → cellular organisms → Bacteria	2450	Open in IMG/M
3300032065\|Ga0318513_10273797	All Organisms → cellular organisms → Bacteria	819	Open in IMG/M
3300032068\|Ga0318553_10383867	Not Available	735	Open in IMG/M
3300032076\|Ga0306924_10906778	All Organisms → cellular organisms → Bacteria	974	Open in IMG/M
3300032090\|Ga0318518_10108011	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1394	Open in IMG/M
3300032261\|Ga0306920_100263162	All Organisms → cellular organisms → Bacteria	2572	Open in IMG/M
3300032261\|Ga0306920_100562211	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1689	Open in IMG/M
3300032261\|Ga0306920_100940093	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1262	Open in IMG/M
3300032261\|Ga0306920_104052398	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	531	Open in IMG/M
3300033289\|Ga0310914_10437586	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1183	Open in IMG/M
3300033289\|Ga0310914_10439912	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1180	Open in IMG/M
3300033289\|Ga0310914_10443781	Not Available	1174	Open in IMG/M
3300033289\|Ga0310914_11836669	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	510	Open in IMG/M
3300033290\|Ga0318519_10249267	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1027	Open in IMG/M
3300034147\|Ga0364925_0090640	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1077	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.01%
Host-Associated	Host-Associated	0.99%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	97.03%
Aquatic	Environmental → Aquatic	1.98%
Plants	Host-Associated → Plants	0.99%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	96.04%
Freshwater	Environmental → Aquatic → Freshwater	0.99%
Sediment	Environmental → Aquatic → Sediment	0.99%
Floodplain	Environmental → Terrestrial → Floodplain	0.99%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	76.24%
Loam	Environmental → Terrestrial → Soil → Loam	10.89%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	8.91%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.99%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.99%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.99%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.99%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	69.31%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	9.90%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	8.91%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	6.93%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.99%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.99%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.99%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.99%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	36.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	30.69%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	9.90%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	8.91%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	6.93%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.98%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.99%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.99%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.99%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.99%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.99%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006041	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010863	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (PacBio error correction)	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300017999	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_10_MG	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300027703	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 81 (SPAdes)	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031780	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f21	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032051	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M
3300034147	Sediment microbial communities from East River floodplain, Colorado, United States - 44_j17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A1DRAFT_100264811	3300000597	Forest Soil	MIANAVMDXFLKIFIVTLMALAFVGWLADRRAAAKRSDVTPGLSLLPGDIKY
AF_2010_repII_A1DRAFT_100315583	3300000597	Forest Soil	MDTFLKIFIVVMLALAFIGWLADRRAAANRSDVTPGLS
Ga0062386_1015159822	3300004152	Bog Forest Soil	MDTFLKIFIVMVLALAFIGWLADRRAAAKRSDVTPGLSLL
Ga0066395_100506635	3300004633	Tropical Forest Soil	MIANAVMDTFLKIFIVTLMALAFVGWLADRRAAAKRSDVTPGLSLLPGDIKYESPNGNVRVYF
Ga0066388_1006872313	3300005332	Tropical Forest Soil	MATFLEVFIVVLLALVFVGWLANRRAAANRNDVTPGLSFLPGDIKYESPHCY*
Ga0066388_1015288371	3300005332	Tropical Forest Soil	MDTFLKIFIGVVLALAFIGWLADRRAAANKPDVTPGLFLLPGDMKFESPNGNVRV*
Ga0070659_1008930861	3300005366	Corn Rhizosphere	MITFLKIFVVVLLALAFVGWLADRRAAANQPDVTPGLSLLPGDIKY
Ga0066905_1014517941	3300005713	Tropical Forest Soil	MDTFLKIFIVMVLAFAIIGWVADRRAAARRSDVTPGLSLLPGDIKYESP
Ga0066905_1020929762	3300005713	Tropical Forest Soil	MDTFLKIFIVMVLALAFVGWLADRRAAANRSNVTPGLSLLPGDIKYESPNGNIRVYF
Ga0066903_1003310821	3300005764	Tropical Forest Soil	MDTFLKIFIVVVLALAFIGWLADRRAAANRSNVTPGLSLLPGDIKYESPNG
Ga0066903_1038567811	3300005764	Tropical Forest Soil	MGTFLEIFIVTVLVLAFIGWLADRRAAAEKPNVTPGLSFLPGD
Ga0066903_1051219193	3300005764	Tropical Forest Soil	MSTFLKIFIALVIVLAFIGWLADRRAAANRPNVTPGLSFLPGDIKYQSPNGN
Ga0070717_118804402	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MITFLKIFVVVLLALAFVGWLADRRAAANQPDVTPGLSLLPGDIKYQSPAGNVRVY
Ga0075023_1003864851	3300006041	Watersheds	MGKFFEIFIVVVLALAFIGWLADRRTAANRLGTARALSLLPGDIKYESPNG
Ga0126374_103391321	3300009792	Tropical Forest Soil	MIANSVMDTFLKIFIVTLLALAFVGWRADRRAATRRSDVTPGLSLLPGDIKY
Ga0126384_120261811	3300010046	Tropical Forest Soil	MDTFLKIFIVMVLALAFIGWLADRRAAAKRSDVTPGLSLLPGDIKYES
Ga0126370_103042833	3300010358	Tropical Forest Soil	LIANSVMDTFLKIFIVTVLALAFIGWLADRRAAANRSDVALSLLPGDIKYESPNGNVRVYSPS*
Ga0126372_113685373	3300010360	Tropical Forest Soil	MGTFLKIFIVLVIVLAFIGWLADRRAAANKPNVTPGLSFLPGDI
Ga0126381_1050009582	3300010376	Tropical Forest Soil	MITFLKIFIVVLLALAFVGWLADRRAAANRPDVTPGLSFLPGDITYQS
Ga0126383_133146881	3300010398	Tropical Forest Soil	MDTFLKIFIVMVLALAFVGWLADRRAAANRSDVTPGLSLLPGDIKYESPNGN
Ga0124850_10891731	3300010863	Tropical Forest Soil	MDTFLKIFIVMVLALAFIGWLADRRAAPKRSDVTPGLSLLPGHIKYES
Ga0126369_104588403	3300012971	Tropical Forest Soil	MDTFLTIFIVTVLALAFIGWLADRRAAAQKPDVTPGLSFLPGDIKYES
Ga0182036_108107831	3300016270	Soil	MGTFLEIFIVTVLVLAFIGWLADRRAAAEKPNVTPGL
Ga0182036_115402191	3300016270	Soil	MDTFLKIFIVTVLALAFIGWLADRRAAAQKPNVTPGLSFLPGDIKYESPNGNVRVY
Ga0182041_106001261	3300016294	Soil	MDTFLKIFIVMVLALAFIGWLADRRAAANRSDVTPGL
Ga0182033_104211631	3300016319	Soil	MDTFLKIFIVMVLALAFVGWLADRRAAAKRSDVTPGLSLLPGDIK
Ga0182035_109369751	3300016341	Soil	MGTFLKIFIVTILALAVIGWLADKRAAARRSDVTA
Ga0182040_107551782	3300016387	Soil	MDTFLTIFIVTVLALAFIGWLADRRAAAEKPNVTPGLSFLPGDIKYESPNG
Ga0182040_108729332	3300016387	Soil	MATFVKIFIVVLLALAVVGWLADRRAAANRLDVTPGLSFLPGDIKYQSPAGNVRV
Ga0182037_120027362	3300016404	Soil	LIANSVMDTFLKIFIVTVLALAFIGWLADRRAAANRTDVTPGVS
Ga0182039_108383381	3300016422	Soil	MDTFLIIFIATLLALAVIGWVADRRAVAQKPKVTPGLSFLPGDIKYESPNGNV
Ga0182039_112868561	3300016422	Soil	MATFLKIFIVMVLVLAFIGWFADRRAAARRSDVTPGLSL
Ga0182039_116132251	3300016422	Soil	MDTFLKIFIVTVLALAFIGWLADRRAAAQKPNVTPGLSF
Ga0182038_104224731	3300016445	Soil	MGTFLKIFIALVIVLAFIGWLADRRAAANKPNVTPGLSFLPGDIKYQSP
Ga0182038_109749611	3300016445	Soil	MMDTFLKIFIVMVLALAFIGWLADRRAAAKRSDVT
Ga0187783_101913632	3300017970	Tropical Peatland	MDTSNLLHQPETDRVMVTFLKIFIVVVLALAVIGWLADRRAAARRPNVTPGLSFLPGDIKYESPNGNVRIYF
Ga0187783_105905261	3300017970	Tropical Peatland	MDTFLKTFIVVMLALAFIGWLADRRAARRPEVTPGLSFLPGDIKYESPNGNV
Ga0187780_114560411	3300017973	Tropical Peatland	MGKFLEIFMVVVIVLAFIGWLADRRAAANKPNVTPGLSFLPGDIKYQSPNGNVRIYFS
Ga0187777_110957721	3300017974	Tropical Peatland	MDTFLKIFIVTVLALAFIGWLAERRAAAQKPNVTPGLSFLPGDIKYESR
Ga0187782_115915082	3300017975	Tropical Peatland	MATFLKIFVVVLLALALVGWLADRRAAANRPDVTPGL
Ga0187767_103566581	3300017999	Tropical Peatland	MDTFLKIFIVMVLALALIGWLADRRAAAKKSDVTPGLSLLP
Ga0187766_112837611	3300018058	Tropical Peatland	MDTFLKIFIVTILALAFIGWLADRRAAANSSNVTPGLSLLPGDIKYESPNGNV
Ga0187765_102629512	3300018060	Tropical Peatland	MDTFLKTFIVVMLALAFIGWLADRRAARRPEVTPGLSFLPGDIK
Ga0187765_112543161	3300018060	Tropical Peatland	MGTFIQIFVVTLLALAFIGWLADRRAATQKSDVTPGLSLLPGDIKYESPN
Ga0210406_106746791	3300021168	Soil	MDTFLKIFIVMVLALAFIGWLADRRAAAKRSDVTPGLSLLPG
Ga0210393_113174242	3300021401	Soil	MATFLIIFIVVLLALAFVGWLADRRATANRPDVTP
Ga0207862_12579102	3300027703	Tropical Forest Soil	MDTFLKIFIVMVLALACIGWLADRRAAAKRSDVTPGLSLLPGDIKY
Ga0318573_106260921	3300031564	Soil	MVTFLKIFIVVVLALAFIGWLADRRAAANRPHVTPGLSFLPGDIKYE
Ga0318496_101696561	3300031713	Soil	MIANSVMDTFLKIFIVTLLALAFVGWLADRRAATRRSDVTPELSLL
Ga0306917_107269411	3300031719	Soil	MDTFLKIFIVMVLALAFVGWLADRRAAANRSNVTPGLSLL
Ga0318500_103496461	3300031724	Soil	MDTFLKIFIVTVLALAFIGWLADRRTAAQKPNVTPGLSFLPGDIKYESPTGN
Ga0318501_107720852	3300031736	Soil	MDTFLKIFIVMVLALAFVGWLADRRAAANRSNVTPGLSLLP
Ga0306918_107191512	3300031744	Soil	MDTFLEIFIVMLLALAVIGWIADRRAATQKSNVTPGLSLLP
Ga0318537_100159204	3300031763	Soil	MDTFIKIFIVVLLALAFIGWLADRRATARRPDVTPGLS
Ga0318508_10825881	3300031780	Soil	MIANSVMDTFLKIFIVTLMALAFVGWLADRRAAAKRSDVTPG
Ga0318557_102140371	3300031795	Soil	MDTFLKIFIVMVLALAFIGWLADRRATNRSDVTPGLSLLPGDIK
Ga0318576_105117641	3300031796	Soil	MDTFLKIFIVTVLALAFIGWLADRRAAAQKPNVTPGLSFLPGDIKYESPN
Ga0318523_100578071	3300031798	Soil	MDTFIKIFIVVLLALAFIGWLADRRATARRPDVTPGLSF
Ga0310917_102989281	3300031833	Soil	MDTFLKIFIVMVLALAFVGWLADRRAAANRSNVTPGLS
Ga0310917_105120401	3300031833	Soil	MDTFLKIFIVTVLALAFIGWLADRRAAAQKPNVTPGLSFLPGDIKYE
Ga0318511_100207571	3300031845	Soil	MIANSVMDTFLKIFIVTLLALAFVGWLADRRAATRRSDVTPELSLLPGDIKYESPNGNVRVYL
Ga0318512_102344072	3300031846	Soil	MDTFIKIFIVVLLALAFIGWLADRRATARRPDVTPGLSFLPGDFKYESPN
Ga0306919_102858242	3300031879	Soil	MDTFLKIFIVMVLALAFIGWLADRRAAAKRSDVTPGLSLLPGD
Ga0306925_108730641	3300031890	Soil	MDTFLKIFIVMVLALAFVGWLADRRAAAKRSDVTPGLSLLPGDIKYESPNGNVRV
Ga0306925_111352881	3300031890	Soil	MDTFLKIFIVMVLALAFVGWLADRRAAANRSNVTPGLSHLPG
Ga0306925_118572121	3300031890	Soil	MDTFFVIFIVTLLALAVIGWLADRRAAAQKPKVTPGLSFLPGDIKYESPNGNVRVYF
Ga0318536_101082421	3300031893	Soil	MDTFIKIFIVVLLALAFIGWLADRRATARRPDVTPGLSFLPGDFKYESPNGNVRIYFP
Ga0318520_100050451	3300031897	Soil	MDTFLKIFIVTILALAVIGWLADKRASARRSNVTPGLS
Ga0306923_123668952	3300031910	Soil	MATFLIIFIVVLLALAFVGWLADQRAAANRPDVTPGLSFLPGDIKYESR
Ga0310912_103701562	3300031941	Soil	MMDTFLKIFIVMVLALAFIGWLADRRAAAKRSDVTPGLSLLPGD
Ga0310916_101027541	3300031942	Soil	MDTFLKIFIVTVLALAFIGWLADRRAAAQKPNVTPGLSFLPGDIKYESPNGNVR
Ga0310910_107562812	3300031946	Soil	MGTFLEIFIVTVLVLAFIGWLADRRAAAEKPNVTPGLSFLPGDI
Ga0310910_109034551	3300031946	Soil	MDTFLKIFIVLVLVLACIGWLADRRDRSSNVTPGLSLLPGDIKYESP
Ga0310909_101873794	3300031947	Soil	MDTFFVIFITLLALAVIGWLADRRAAAQKPKVTPGLSFLPGDIK
Ga0306926_108141431	3300031954	Soil	MDTFIKIFIVLMLVLACIGWLADRRATDRSSNVTPGLSLLPGDIKYGSPNGNVRIYFYRDIDCPFSRA
Ga0306926_119109492	3300031954	Soil	MDTFIKIFIVMLLVLAFIGWLADRRAAAQRSDVTPGLSLLPGDIKYESPNGNVRI
Ga0306926_128178202	3300031954	Soil	MNTFLKIFIVTVLALAVIGWLADRRAAAQKPDVTPGLSFLPGDIKYESPNGNVRVYFL
Ga0306926_129286381	3300031954	Soil	MATFLEIFIVTVLALACIGWLADRRAVDRSSNVTPGLSLLPGDIKYESPNGN
Ga0306922_108131421	3300032001	Soil	MMDTFLKIFIVMVLALAFIGWLADRRAAAKRSDVTPGLSLLPGDIK
Ga0306922_112859801	3300032001	Soil	MIANSVMDTFLKIFIVTLLALAFVGWLADRRAATRRSDVTPGLSLL
Ga0310911_106454901	3300032035	Soil	LNSVVLVLALALIGLLADRRAAANRLDVTPGLSFLPGDVKYESPNGNVR
Ga0318559_100185794	3300032039	Soil	MDTFIKIFIVVLLALAFIGWLADRRATARRPDVTPGLSFLPGDFK
Ga0318556_100531871	3300032043	Soil	MDTFLKIFIVMVLALAFVGWLADRRAAANRSNVTPGLSLLPGDIKYESRVYFP
Ga0318532_101788662	3300032051	Soil	MDTFLKIFIVMVLALAFVGWLADRRAAANRSDVTPGLSLLPGDIK
Ga0318533_103866451	3300032059	Soil	MSTFLKIFIALVIVLAFIGWLADRRAAANRPNVTPGLSFLPGDIKYQS
Ga0318505_103282821	3300032060	Soil	MIANSVMDTFLKIFIVTLMALAFVGWLADRRAATRR
Ga0318504_100215315	3300032063	Soil	MIANSVMDTFLKIFIVTLMALAFVGWFADRRAAAKR
Ga0318513_102737972	3300032065	Soil	MDTFLKIFIVMVLALAFVGWLADRRAAANRSNVTPGLSLLPGDIKYESPNGNI
Ga0318553_103838672	3300032068	Soil	MVANAVMDTFLKIFIVTLMALAFVGWLADRRAAARRSD
Ga0306924_109067782	3300032076	Soil	MDTFLKIFIVMVLALAFVGWLADRRAAANRSNVTPGLSLLPGDIKYESRVY
Ga0318518_101080112	3300032090	Soil	MDTFIKIFIVVLLALAFIGWLADRRATARRPDVTPGLSFLPGDFKYESPNGNV
Ga0306920_1002631621	3300032261	Soil	MNASNGDQIIDTFIKIFIVLMLVLACIGWLADRRAADRSSNVTPGLSLLPGDIKYGSPNG
Ga0306920_1005622111	3300032261	Soil	MIANSVMDTFLKIFIVTLLALAFVGWLADRRAATRRSDVTPEL
Ga0306920_1009400931	3300032261	Soil	MGTFLEIFIVTVLVLAFIGWLADRRAAAEKPNVTPGLSFLPG
Ga0306920_1040523981	3300032261	Soil	MGTFLEIFVVMLLALAFIGWLADRRAATQKSDVTPGLSLLPGDIKY
Ga0310914_104375861	3300033289	Soil	MDTFLKIFIVTVLALAFIGWLADRRAAAQKPNVTPGLSFLPGDIKYESPTGNVRVY
Ga0310914_104399121	3300033289	Soil	MDTFLKIFIVTVLALAFIGWLADRRAAAQKPNVTPGLSFLP
Ga0310914_104437811	3300033289	Soil	MDTFLKIFIVMVLALAFIGWLADRRAAANRSDVTPGLSLLPGDI
Ga0310914_118366691	3300033289	Soil	MDTFLKIFIVTVLALAFIGWLADRRAAGQKPNVTPGLSFLPGDIKYESPNGNV
Ga0318519_102492671	3300033290	Soil	MDTFLKIFIVMVLALAFVGWLADRRAAAKRSDVTPGLSLLPGDIKYE
Ga0364925_0090640_942_1076	3300034147	Sediment	MDTFLKIFIVMVLALACIGWLADRRAAAKRPDVTPGLSLLPGDIK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F102298

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences