Metagenome / Metatranscriptome Family F102210

Overview

Basic Information

• Family ID: F102210
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 101
• Average Sequence Length: 41 residues
• Representative Sequence: ASSELQVIARNCDWFIALFVPVVIGRSNCFGFGFSTVI
• Number of Associated Samples: 10
• Number of Associated Scaffolds: 101

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Unclassified
• % of genes with valid RBS motifs: 0.00 %
• % of genes near scaffold ends (potentially truncated): 0.00 %
• % of genes from short scaffolds (< 2000 bps): 0.00 %
• Associated GOLD sequencing projects: 7
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.32

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Unclassified (100.000 % of family members)
• NCBI Taxonomy ID: N/A
• Taxonomy: N/A

Most Common Ecosystem

• GOLD Ecosystem: Host-Associated → Invertebrates → Cnidaria → Coral → Unclassified → Coral (50.495 % of family members)
• Environment Ontology (ENVO): Unclassified (100.000 % of family members)
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal corpus (100.000 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 42.42%
  β-sheet: 0.00%
  Coil/Unstructured: 57.58%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF14752	RBP_receptor	1.98
PF00168	C2	1.98
PF00335	Tetraspanin	1.98
PF10191	COG7	0.99
PF04991	LicD	0.99
PF06419	COG6	0.99
PF00687	Ribosomal_L1	0.99
PF05577	Peptidase_S28	0.99
PF00001	7tm_1	0.99
PF12946	EGF_MSP1_1	0.99
PF13540	RCC1_2	0.99
PF00620	RhoGAP	0.99
PF07524	Bromo_TP	0.99

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG0081	Ribosomal protein L1	Translation, ribosomal structure and biogenesis [J]	0.99
COG3475	Phosphorylcholine metabolism protein LicD	Lipid transport and metabolism [I]	0.99

Phylogeny

NCBI Taxonomy

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	100.00 %

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	100.00%

Class

Habitat	Taxonomy	Distribution
Invertebrates	Host-Associated → Invertebrates	100.00%

Category

Habitat	Taxonomy	Distribution
Cnidaria	Host-Associated → Invertebrates → Cnidaria	100.00%

Type

Habitat	Taxonomy	Distribution
Coral	Host-Associated → Invertebrates → Cnidaria → Coral	100.00%

Subtype

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Invertebrates → Cnidaria → Coral → Unclassified	100.00%

Habitat

Habitat	Taxonomy	Distribution
Coral	Host-Associated → Invertebrates → Cnidaria → Coral → Unclassified → Coral	50.50%
Coral	Host-Associated → Invertebrates → Cnidaria → Coral → Unclassified → Coral	44.55%
Coral Tissue	Host-Associated → Invertebrates → Cnidaria → Coral → Unclassified → Coral Tissue	4.95%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300013948	Coral microbial communities from a home aquarium in Belgium - AM-T0-control A	Host-Associated
3300022595	Metatranscriptome of coral microbial communities from Popa Island, Bocas del Toro, Panama - APAL T2 (Eukaryote Community Metatranscriptome)	Host-Associated
3300022596	Metatranscriptome of coral microbial communities from Popa Island, Bocas del Toro, Panama - APAL T1 (Eukaryote Community Metatranscriptome)	Host-Associated
3300022597	Metatranscriptome of coral microbial communities from Popa Island, Bocas del Toro, Panama - APAL T3 (Eukaryote Community Metatranscriptome)	Host-Associated
3300022598	Metatranscriptome of coral microbial communities from Popa Island, Bocas del Toro, Panama - APAL C1 (Eukaryote Community Metatranscriptome)	Host-Associated
3300022599	Metatranscriptome of coral microbial communities from Popa Island, Bocas del Toro, Panama - APAL C2 (Eukaryote Community Metatranscriptome)	Host-Associated
3300022600	Metatranscriptome of coral microbial communities from Popa Island, Bocas del Toro, Panama - APAL C3 (Eukaryote Community Metatranscriptome)	Host-Associated
3300027103	APAL control metatranscriptome co-assembly	Host-Associated
3300027264	APAL treatment metatranscriptome co-assembly	Host-Associated
3300027507	APAL treatment+control metatranscriptome co-assembly	Host-Associated

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0116699_10129461	3300013948	Coral Tissue	LVALSKLKVNVRNSDWFIALFAPVVIGLSNNFGFGFSTVI*
Ga0116699_10229921	3300013948	Coral Tissue	SSELQVIVKNCDWFIALPAPVIGRSNCFGFGFSTLI*
Ga0116699_10368291	3300013948	Coral Tissue	TLHFSRALSELQVIARNCDWFIALFAPAVIGRSNCFGFGFSTVI*
Ga0116699_10656342	3300013948	Coral Tissue	RDFFRVSSELQLIAKNCDWFIALSAAVVIGRSNYFGFGFSTVI*
Ga0116699_10946832	3300013948	Coral Tissue	MRDFSRALNWLREISRNSDWFIALFVLVVIGGSNYFEVGFSLGVNNT*
Ga0215184_10065101	3300022595	Coral	CTRDFSRASSELQVIARNCDWFIALFVPVVIGRSDCFGFGFPTVI
Ga0215184_11163972	3300022595	Coral	VAPGTRDFSRAVSELQRIARNCDWLIVLFVPVVIGRNDYFGFGFSTVI
Ga0215184_11271361	3300022595	Coral	TRDFYRASSELQVIARNCDWFIALAAPVVIGRSNCFGFGFSTVI
Ga0215184_11504411	3300022595	Coral	HFSRALSELQVIARNCDWFIALFAPAVIGRSNCFGFRFSTVI
Ga0215184_11615242	3300022595	Coral	RVLSEVQVIARNCDWSIALFAPIVIGRSNPFGFGFSTVI
Ga0215184_12213321	3300022595	Coral	SDFRLSKSQVIARHFDWFIELFVLVVVGRSNCFGFGFSTVI
Ga0215184_12236021	3300022595	Coral	SSELQVIAKNCDWFIALPAPVVIVQSNCFGFGFSTVI
Ga0215183_10252812	3300022596	Coral	ELQVIARNCDWFIALFVPVVIGRSYCFGFGFSTVI
Ga0215183_10268863	3300022596	Coral	FSRALSELQIIARNCDWFIVLFAPVVIGRNNCFGFGFSTVV
Ga0215183_11097782	3300022596	Coral	SELQVIARNCDWFIALFAPVVIGRSNCFGFGFSTVI
Ga0215183_11496021	3300022596	Coral	RDFSRASSELHVIARNCDWFIALSAPVVIGRSNCFGFGFSTVI
Ga0215183_11788701	3300022596	Coral	ELHVIARNCDWFIALPAPVVIGRSNCFGFGFSTVI
Ga0215183_11799461	3300022596	Coral	ELQVIARNCDWFIALPAPVVIGRSNCFDFGFSTVI
Ga0215183_12027851	3300022596	Coral	ASSGLQVIARNCDWFIALPAPVVIGRSNCFGFGFPIVI
Ga0215185_10307701	3300022597	Coral	FSRALSKFQIIARNCDWFIALFAPVVIGRSNCFGFGYLTVI
Ga0215185_10911941	3300022597	Coral	KPKPIAPCTRDFSRVSSELQVIARNYDWFMELFVPVVIGQSNCFGFGFLTVIRKPL
Ga0215185_11403071	3300022597	Coral	RGSSHASSELQVIVRNCDWFIALFAPVVIGRNNCFGCGFSTVI
Ga0215180_10073601	3300022598	Coral	ELHVIARNSDWFMALFVPVVIGQSDYLGFGFSTVISKPLYC
Ga0215180_10233951	3300022598	Coral	SELQVIVSNCDWFIALFAPVVIGRSNCFGFGFSTVI
Ga0215180_10285511	3300022598	Coral	RDFSRASSELQVIARNYDWFISLPAPIVIGRSNCFGFGFATVI
Ga0215180_10336972	3300022598	Coral	RQFFNRDFSRASSELQVIARNYDWFIALSAHVVIGRSNCFGFGFSTVI
Ga0215180_10478421	3300022598	Coral	ASSELHVIARNCDWFIALPAPVVIGRSNCFGFGFSTVI
Ga0215180_10601132	3300022598	Coral	FSRASSELQVIARNCDWSMELFVPVVIGQSNCFGFGFSTVI
Ga0215180_10630292	3300022598	Coral	MRNRKQKPIATCTRDFSRPLSNLQVIAKNSDWFIALFAPLVIGLRYYLGFGFSTVI
Ga0215180_11055672	3300022598	Coral	RALSELQIIARNCDWFIALFAPVVIGRSDCYGFGFSTVI
Ga0215180_11224621	3300022598	Coral	KLQVIARNCDWFIALFVAVVIGRSNCFGFGFGFWTVI
Ga0215180_11262851	3300022598	Coral	SELQVIARNCDWFMALFVPVVIGRSYCFGFGFSTVI
Ga0215180_11520011	3300022598	Coral	RASSELQVIARNCDWFMALFVPVVIGRSNCFGFGFSTVI
Ga0215180_11889641	3300022598	Coral	DELQIIARNYDWFIALPAPVVIGRSNCFGFGFSTVI
Ga0215180_12564591	3300022598	Coral	ATAMAPFTRDFSRALSNLQIMARNSDWFTALFTPVVIGRSYYFGIDFSTAI
Ga0215180_12569761	3300022598	Coral	CTRDFSRASSELQVIARNCDWFIALFVPVVIGRSYCFGFGFPTVI
Ga0215181_10223594	3300022599	Coral	CTSSKLQVIARNCDWFMALFVPVVIGQSNCFGFGFSIVI
Ga0215181_10356211	3300022599	Coral	SELQLIARNCDWFMALFVPVVIGRSNCFGFGFSTVI
Ga0215181_10396671	3300022599	Coral	AAIYEKGLCTRDFSRASSELQVIAGNCDWFIALFVPVVIGWSNCFGFGFTTVI
Ga0215181_10818751	3300022599	Coral	DFSRASSELQVIARDSDWFIALSTPVVIGQSNCFGFGFSTVI
Ga0215181_11184431	3300022599	Coral	SELQVIPRNCDWFIALSAPVVIGRSNYFFGFGFSTVI
Ga0215181_11228831	3300022599	Coral	RDFSRAFSKFQMIARNCDWFIALFVPVVIGRSNCFGFGFSTVI
Ga0215181_11284051	3300022599	Coral	RASSELQVIAKNCDWFIALPAPVVIGRSNCFGFGFSTVI
Ga0215181_11384872	3300022599	Coral	ARDFSRASSELQVIARNCDWFMALFVPVVIGRSYCFGFGFSTVI
Ga0215181_11707013	3300022599	Coral	ASSELQVIARNCDWFIALPAPVVIGRSNCFGFGFSTVI
Ga0215182_10356303	3300022600	Coral	SSELQVIARNCDWFIALPAPVVIGRSNCFGFGFSTVI
Ga0215182_11149861	3300022600	Coral	ASSELQVIARNSDWFMALFVPFVIGQSDYFGFGFSTVI
Ga0215182_11290721	3300022600	Coral	PCTRDFSRASSELQVIARNCDWFIALPAPVVIGRSNCFGFGFSTVI
Ga0215182_11715371	3300022600	Coral	ELQVIARNCDWFIALFVPVVIGRSNCFGFGFSTVI
Ga0215182_12040241	3300022600	Coral	KPIAPRTRDFYRGLSELQIIARNCDWFIVLFAPVVIGRNNCFGFGFSTVV
Ga0255581_10042191	3300027103	Coral	RDFSRASSELQVIARNCDWFIAPFVPLVIGRSNCFGFGFSTVI
Ga0255581_10150312	3300027103	Coral	MVHGDFSRASSELQVIARNCDWFIALFVPVVIGRSNCFGFGFATVI
Ga0255581_10245571	3300027103	Coral	EFQVIARNYDWFIALSAPVMIGWSNCFGFGFLTVI
Ga0255581_10381632	3300027103	Coral	GALSKLQVIARNCDWFIALFAPVVIGPSNCFGFGFSTVI
Ga0255581_10728471	3300027103	Coral	AKPKPIARCTRDFSRASSELQVIARNCDWFIALFVPVVIGRSDCFGFGFPTVI
Ga0255581_10925711	3300027103	Coral	RDFSRAWSELQVIARNCDWFTALFVPVVIGRSNCFG
Ga0255581_11008181	3300027103	Coral	ISRASGELQVIARNCDWFTELFVPVVIGRSNCFGFGFSTVI
Ga0255581_11084111	3300027103	Coral	TSELQVIARNCDWFMALFVPVVIDRSNCFGFGFSTVI
Ga0255581_11143041	3300027103	Coral	RGFSRASSELQVIARNCDWSMELFVPVVIGQSNCFGFGFSTVI
Ga0255581_11152901	3300027103	Coral	TRDFSRASSELQVIARNSDWFMALFVPVVIGQSDYFGFGSSTVI
Ga0255581_11200221	3300027103	Coral	KLQVIARNRDWFMALFVPVVIGRSNCFAFGFSTVI
Ga0255581_11243402	3300027103	Coral	TRDFSRALSELQIIARNCDWFIVLFVPVVIGRNNFFGFDFSTVI
Ga0255581_11279482	3300027103	Coral	DFSRASSELQVIARNCDWFIALFVPVVIGRSNCFGFGF
Ga0255581_11297292	3300027103	Coral	CFEKVTCIITRNYDWFIALVAPVVIGRSNDFGIGFWTVI
Ga0255581_11329421	3300027103	Coral	RALNELQVIARNCEWFIALFAPAVIGRSNCFGFGFSTVI
Ga0255581_11349822	3300027103	Coral	SELQVIARNCDWFITLFAPVVIGRSNCFGFGFSTVI
Ga0255581_11379391	3300027103	Coral	RASRELQVIARNCDWFIALFVPVVIGRNNCFGFGFSTVI
Ga0255581_11429481	3300027103	Coral	HFSRASSELQVLARNCDWFIALSAPVVIGRSNRLGFGFSTVI
Ga0255581_11684171	3300027103	Coral	ELQVIAGNCDWFIALPAPIVIGRSHCFGLGFSTVI
Ga0255581_11707121	3300027103	Coral	RYFSCVFSKLQEIPGNSDWFIALFTPVVIGRSNYFGIGFSMVI
Ga0255581_11840221	3300027103	Coral	TRDFSRASGELQVIGRNFDWFMELFVPVVIGRSNCFGLGFSPVI
Ga0255580_10070171	3300027264	Coral	TKTDRTMSHDFSRDTSELQVIARNCDWFIALPAPLVIGRSNCFGFDFSTVI
Ga0255580_10093671	3300027264	Coral	IAPCTRDFSRASSELQVIARNCDWFIALFVPVVIGRSYCFGFGFPTVI
Ga0255580_10169331	3300027264	Coral	SELQVIARNCDWFIALPAPVVIGRSNCFGFGFSTVI
Ga0255580_10501971	3300027264	Coral	ASSELQVIARNCDWFIALFVPVVIGRSNCFGFGFSTVI
Ga0255580_10573171	3300027264	Coral	SELHVIARNCDWFIALPAPVVIGRSNCFGFGFSTVI
Ga0255580_10600771	3300027264	Coral	SGELQVIARNCDWFIALFVPIVIGRSNCFGFGFSTVILKPL
Ga0255580_10624441	3300027264	Coral	MYAXFFRASSEFQVIARNSDWFMTLFAPVVIGQSDYFGFGFSTVIXK
Ga0255580_10880721	3300027264	Coral	AIYEKGLCTRDFSRASSELQVIAGNCDWFIALFVPVVIGWSNCFGFGFTTVI
Ga0255580_11008801	3300027264	Coral	SELQVIARNCDWFITLPAPVAIGRNNCFGFRFSTVI
Ga0255580_11285411	3300027264	Coral	MRDFSRALSKFQIIARNCYWFIALFVPVVIGRSNCFGFSTVI
Ga0255580_11291961	3300027264	Coral	LSELQAIARNCDWFIALPAPAVIGQSNCFGFGFLTVI
Ga0255580_11296771	3300027264	Coral	RTLHFSRALSELQVIARNCDWFIALFAPAVIGRSNCFGFRFSTVI
Ga0255580_11378901	3300027264	Coral	MPTKFYFSRALNKSQLISKNSDWFMALFAPAVIGRSNCFGIGFSTVT
Ga0255580_11882591	3300027264	Coral	ALSKLHVMASNSDWFIALFAPAVIGCSNHFGIVFLQVI
Ga0255582_10115785	3300027507	Coral	ENQNQNQSHNDFSRASSELQVIATICDWFITLPPPVVIGRSNCFGSGFSTVI
Ga0255582_10311613	3300027507	Coral	DFSRASSELLIIGRNCDWFIVLFVPVVIGRNNCFGFGFSTVI
Ga0255582_10434091	3300027507	Coral	SKLQVIARSSDWLIALFAPAVIGPINNFGVGFSTAI
Ga0255582_10504981	3300027507	Coral	RASSELQLIVRNCDWFIALSAAVVIGRSNCFGFGFSTVI
Ga0255582_10618131	3300027507	Coral	MHGFSGALSKLQVIAGNSDWLIELFAPAVIGRSNYFGIGFSMEL
Ga0255582_10654212	3300027507	Coral	GELQMIARICDWFIALLVPVVIGRSNCFGFGFSTVI
Ga0255582_10878821	3300027507	Coral	THDFSCASEGLQVIARNCDWFMELFVPVVIGRSNCFGFGFSTVI
Ga0255582_10885911	3300027507	Coral	PIANFSRVLSKLKEIARNSDYFIALPAPAAISRSNQFGIGFSTVI
Ga0255582_11185721	3300027507	Coral	APCTRDFSRVSSELQVIPRNCDWFIALFVLVVIGRSNCFACGFSTVI
Ga0255582_11267731	3300027507	Coral	RLPVIATNSDWFIALFAHVVIGRSNSFSIGFTTYVLKPF
Ga0255582_11305541	3300027507	Coral	SELQVIARNCDWFIALFVPVVIGRCNCFGFGFSTVI
Ga0255582_11404122	3300027507	Coral	FHFPTNAEPPCTRGFSHASSELQVIAGSCGWFVALPAPVVVGRSDCFGFGFSTVI
Ga0255582_11572791	3300027507	Coral	EFQVIARNSDWFMALFVPVVIGQSDYFGFGSSTVI
Ga0255582_11764551	3300027507	Coral	SELQVIARNYDWFIALAAPVVIGRSNCFGFGFSTVI
Ga0255582_12029731	3300027507	Coral	PRTRDFSRALSELQIIARNCDWFIVLFGRNNCFGFGFSTVV
Ga0255582_12206971	3300027507	Coral	SELQVIARNCDWFIALFAPVVIGRSNCSGFGFSTVI