NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F102184

Metagenome Family F102184

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F102184
Family Type Metagenome
Number of Sequences 101
Average Sequence Length 41 residues
Representative Sequence VPHVAQPGHWLGPVTGLGWLGLAQPMWAELGPAQKIKK
Number of Associated Samples 21
Number of Associated Scaffolds 101

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 50.00 %
% of genes near scaffold ends (potentially truncated) 0.00 %
% of genes from short scaffolds (< 2000 bps) 0.99 %
Associated GOLD sequencing projects 21
AlphaFold2 3D model prediction Yes
3D model pTM-score0.20

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (98.020 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza
(58.416 % of family members)
Environment Ontology (ENVO) Unclassified
(100.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Unclassified
(84.158 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: Yes Secondary Structure distribution: α-helix: 0.00%    β-sheet: 0.00%    Coil/Unstructured: 100.00%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.20
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 101 Family Scaffolds
PF07727RVT_2 4.95
PF03732Retrotrans_gag 3.96
PF01535PPR 0.99
PF02127Peptidase_M18 0.99
PF00931NB-ARC 0.99
PF07983X8 0.99
PF00201UDPGT 0.99
PF14223Retrotran_gag_2 0.99
PF01167Tub 0.99
PF14291DUF4371 0.99
PF00332Glyco_hydro_17 0.99
PF00069Pkinase 0.99
PF00098zf-CCHC 0.99
PF13976gag_pre-integrs 0.99
PF00141peroxidase 0.99
PF03357Snf7 0.99

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 101 Family Scaffolds
COG0515Serine/threonine protein kinaseSignal transduction mechanisms [T] 3.96
COG1819UDP:flavonoid glycosyltransferase YjiC, YdhE familyCarbohydrate transport and metabolism [G] 1.98
COG0376Catalase (peroxidase I)Inorganic ion transport and metabolism [P] 0.99
COG1362Aspartyl aminopeptidaseAmino acid transport and metabolism [E] 0.99
COG1363Putative aminopeptidase FrvXCarbohydrate transport and metabolism [G] 0.99
COG5309Exo-beta-1,3-glucanase, GH17 familyCarbohydrate transport and metabolism [G] 0.99
COG5491Archaeal cell division protein CdvB, Snf7/Vps24/ESCRT-III familyCell cycle control, cell division, chromosome partitioning [D] 0.99


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A98.02 %
All OrganismsrootAll Organisms1.98 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300028786|Ga0307517_10383819Not Available749Open in IMG/M
3300030521|Ga0307511_10076191Not Available2400Open in IMG/M
3300032355|Ga0325401_1002332All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta16835Open in IMG/M
3300032389|Ga0325405_1001009All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Salix28275Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
EctomycorrhizaHost-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza58.42%
XylemHost-Associated → Plants → Wood → Unclassified → Unclassified → Xylem38.61%
LeafHost-Associated → Plants → Phylloplane → Unclassified → Unclassified → Leaf2.97%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300028786Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EMHost-AssociatedOpen in IMG/M
3300028794Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EMHost-AssociatedOpen in IMG/M
3300030521Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EMHost-AssociatedOpen in IMG/M
3300030522Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EMHost-AssociatedOpen in IMG/M
3300031456Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EMHost-AssociatedOpen in IMG/M
3300031507Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EMHost-AssociatedOpen in IMG/M
3300031616Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EMHost-AssociatedOpen in IMG/M
3300031649Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EMHost-AssociatedOpen in IMG/M
3300031730Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EMHost-AssociatedOpen in IMG/M
3300031838Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 25_EMHost-AssociatedOpen in IMG/M
3300032354Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdKOR-R4Host-AssociatedOpen in IMG/M
3300032355Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdKOR-R2Host-AssociatedOpen in IMG/M
3300032374Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdKOR-R1Host-AssociatedOpen in IMG/M
3300032389Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-Control-R2Host-AssociatedOpen in IMG/M
3300032390Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-Control-R1Host-AssociatedOpen in IMG/M
3300032740Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdIQD-R4Host-AssociatedOpen in IMG/M
3300032741Populus deltoides microbial communities from Bellville, Georgia, United States - Leaf-PdKOR-R3Host-AssociatedOpen in IMG/M
3300033160Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdKOR-R3Host-AssociatedOpen in IMG/M
3300033179Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EMHost-AssociatedOpen in IMG/M
3300033180Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EMHost-AssociatedOpen in IMG/M
3300034901Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdIQD-R2Host-AssociatedOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0307517_1000964733300028786EctomycorrhizaVPHVAQPGHWLGPVTGLGWLGLAQPMWAELGPAQKIKK
Ga0307517_1001122193300028786EctomycorrhizaMRAVAQPGHWLGPVTELGRLGLAQPMWAELGPTPKT
Ga0307517_1004909413300028786EctomycorrhizaVPHVAQPGYWLGPVTRLGWLGLAQHMWAELGPAQKNKKNKK
Ga0307517_1014542913300028786EctomycorrhizaMRAVAQPGHWFGPVTGLGWLGLAQPMWAELGPAPKKIKIK
Ga0307517_1017518113300028786EctomycorrhizaVLHVAQSGHWLGPVTGLGWLGVAQPMWAELDPALKNKKNKKIKK
Ga0307517_1025174923300028786EctomycorrhizaMAQPGHWFGPVTGLGWLGLAQPMWAELDPAPEIIKNIKKI
Ga0307517_1032457823300028786EctomycorrhizaVPLVFFAQPGHWLGPVTGLGWLGLAQPMWAELGPAQKCKKKKKDKK
Ga0307517_1033335223300028786EctomycorrhizaVPHVAQPGHWFGPVTEPGWLGLAQPMWAELDPAPKIIKNRKKYKKYKKIGEIEK
Ga0307517_1038381913300028786EctomycorrhizaVPSVAQPGHWLGPVTGLGWLDLAQPMWAELGPAQKNKKNKK
Ga0307517_1044251723300028786EctomycorrhizaVAQPGHWLGPVTRLGQLGYMWAELGPAPKIIKNKK
Ga0307517_1059187613300028786EctomycorrhizaVLHVAQPGHWLGPVTGPGWLGLAQPMWAELDPAQKKNKKNKKTGK
Ga0307515_1000286963300028794EctomycorrhizaMRALAQPGHWLGPVTGPGWLGLAQPMWAELDPAKNI
Ga0307515_1005541433300028794EctomycorrhizaVLHVAQPGHWLGRLGLAQPIWIELGPASKKYKKKTEK
Ga0307515_1006774523300028794EctomycorrhizaVPAAQPGHWLGPVAGPGWLGPAQHTWAELGPAQKNKKIKK
Ga0307515_1084866113300028794EctomycorrhizaVLHVAQPSHWLGLVTRLGWLGLAQPMWAELGPAPKH
Ga0307515_1087612223300028794EctomycorrhizaVPHVAQPGHWFGPVTEPGWLGLAQPMWAELDPAPKIIKNRKKYKKYKKIGEI
Ga0307511_1007619113300030521EctomycorrhizaVLHVAQPGHWLGPVTRPGWLGLAQSIWAELGPTPQNKNLKFKN
Ga0307511_1008911213300030521EctomycorrhizaVPHVAQPGHWLGPVTRLGWLGLAQPMWAELGPAQKNIKNIKYKI
Ga0307511_1010142013300030521EctomycorrhizaMRALAQPGHWLGPVTRPGWLGVAQPMWAEMDPAKNI
Ga0307511_1011210233300030521EctomycorrhizaCLAQPGHWLGPLAGPGRLGLAQPMWAELGPAQKYK
Ga0307512_1018597123300030522EctomycorrhizaVNFNSLAQCSSAQPGHWLGPVARSGWLGLAQPMWAELGPTQNNKK
Ga0307512_1037091513300030522EctomycorrhizaVLHVAQPGHWLGPVTRPGWLGLAQSIWAELGPTPQNKNLKLKN
Ga0307513_1001464513300031456EctomycorrhizaVPHVAQPGHWLGPVTRLGWLGLTQPMWAELGAAQKNKN
Ga0307513_1003192023300031456EctomycorrhizaVPHVAQPGHWLGPVTGLGWLGLAQPMWAELGPAQKK
Ga0307513_1003249943300031456EctomycorrhizaVAQPGHWLGPVTGLGWLDLAQPMWAELGPAQKNKKNKK
Ga0307513_1004764533300031456EctomycorrhizaMAQPGHWLGPVTGLGWLGLAQPMWAELDPAPKIIKKYKKYKKI
Ga0307513_1012338143300031456EctomycorrhizaMLHVAQPGHWLGPVTGPAWLGLAQSKKNKKNKNYVCVKINLFYLFIR
Ga0307513_1037220233300031456EctomycorrhizaVPHVAQPGHWLRPVTGLGWLGLAQPMWAELGPAQKKIK
Ga0307513_1109308113300031456EctomycorrhizaMAQPGHRLGPVTGLGWLGLAQPMWAELDPAQKIIQK
Ga0307509_1002182353300031507EctomycorrhizaVPSVAQPGHWLGPVTGLGWLGLAQPMWAELDPAPKT
Ga0307509_1007537433300031507EctomycorrhizaVLHVAQPGHWLGPVTRAGCLGLGQPISAKLGPNPKNKNKK
Ga0307509_1012362023300031507EctomycorrhizaVLHVAQPGHWLGPVTGPGWLGLAQPIWAELGPAQKN
Ga0307509_1042500223300031507EctomycorrhizaVPHVAQPGHWLGPVTGLGWLGLAQPMWAELGPAQKIKKQKNRKTEK
Ga0307509_1053227313300031507EctomycorrhizaVLHVAQPGHWLGPVTWPGWLGQAQPTWAERDPAQKKSKKIKKIKS
Ga0307508_1001641053300031616EctomycorrhizaMLHVAQPGHWLGPVTGPDWLGLAQPIWAKLGPTQKNKK
Ga0307508_1005669843300031616EctomycorrhizaVLHVAQSGHWLGPVTGLGWLGVAQSMWAELDPALKNKKNKKIKK
Ga0307508_1024774413300031616EctomycorrhizaVAQPGHWLGPMTGPGWLGPAQPMWAELDPAPKKLKKIKKYVHA
Ga0307508_1042248513300031616EctomycorrhizaFGSRVPHVAQPGHWLRPVTGLGWLGLAQPMWADLGPAQKT
Ga0307508_1088124423300031616EctomycorrhizaVPHVAQPGHWFGPVTEPGWLGLAQPMWAELDPAPKIIKNRKKYKKYKKIG
Ga0307514_1005714353300031649EctomycorrhizaVLHVAQPGHWLGPMTGPGWLGPAQPMWAELDPAPKKLKKIKKYVHA
Ga0307514_1029499823300031649EctomycorrhizaMRAVAQPGHWIGPVTGLGWLGLAQPMWAELGPAPKKIKNKKTEK
Ga0307514_1030779713300031649EctomycorrhizaMPHVAQPGHWLGPVTGLGWLGLAQPMWAELGPTQKNKK
Ga0307516_1003726113300031730EctomycorrhizaMAQPGHWLGLVTGMGWLGIAQPMWAELDPALKKKKKNRKI
Ga0307516_1003948213300031730EctomycorrhizaVPHVAQPGHWLGPVTGLGWLGLAQPMWAELGPTQKNKKKKK
Ga0307516_1008275743300031730EctomycorrhizaVVRAFAQQGHWLGPVTGLGWLGLVQPIWAELGPAPKKMKNRKINNRKNRKK
Ga0307516_1063947513300031730EctomycorrhizaVPHVAQPGHWLGPVTRLGQLGYMWAELGPAPKIIKNKK
Ga0307516_1078939613300031730EctomycorrhizaMAQPGHWFGPVTGLGWLGLAQPMWAELDPAPEIIKNIKKYKKYKKIGEIEK
Ga0307516_1091724713300031730EctomycorrhizaMAQPGHWLGPVTGLGWLGLAQAMWVELGPAQKNKKEQK
Ga0307516_1101626213300031730EctomycorrhizaMAQPGHWLGPVTGLGWLGLAQPMWAAQKNKKEQKSKKGRKN
Ga0307518_1002239933300031838EctomycorrhizaVRAFAQPGHWLGPVTGLGWLGLVQPMWAELGPAPKIIKNKK
Ga0307518_1013496523300031838EctomycorrhizaVLYVAQPGHWLGPVTGLGWLGLAQPMWAKLGPSQKKHKIKK
Ga0307518_1022189613300031838EctomycorrhizaMRAVAQPGHWLGLVTELGWLGLAQPMWAELGPAPKKINNKKIEK
Ga0307518_1050074813300031838EctomycorrhizaVPHVAQPGHWFGPVTEPGWLGLAQPMWAELDPAPKIIKNRKKYKQ
Ga0325403_1001332103300032354XylemVVRAFAQPSHWLGPVTGLGWLGLVQPMWAELGPTPKKMKNRKIKK
Ga0325403_1002058123300032354XylemVPLVFAQPGHWLGLVTKLGWLGLAQPMWAELGPAQKYK
Ga0325403_100365563300032354XylemMAQPGHWFMRVIGLSWLGLAQHMWAELGPAPKHKK
Ga0325403_100765953300032354XylemVPHVAQSGHWLGLVTGLGWLGLAQPMWAELDPAPKTINKKIKNNIEK
Ga0325403_100940753300032354XylemVLHVAQPGHWFRPVTGLGWLGLAQPMRAELDPAQKKTKKLKI
Ga0325403_101793943300032354XylemVPRVAQPGHWLGPVTRLGRLGLAQPMWAELGPAPQKKEK
Ga0325403_101818323300032354XylemMAQPGHWLGPVTGLGWLGPAQPMWAELGPARKKKLKSKK
Ga0325403_102348313300032354XylemMRAVAQPGHWFGPVTGLGWLGLAQPMWAELDPAPKITKIIKNKKIEK
Ga0325403_102385363300032354XylemVPSVAQPGHWFGPVTGLGWLGLAQPIRAELGPASPKNIKNKK
Ga0325403_103140323300032354XylemMLHVAQPGHWLGPVTGPGWLGLAQPMWAELGPTQKNKK
Ga0325403_103918713300032354XylemVPHVAQPGHWLGPVTRLGWLGLAQPMWAKLGPAPKHKIEKIEK
Ga0325403_104643733300032354XylemMLHVAQPGHWLGPVTGLGWLGLAQPMWAELDPAQKKNKKYKNIKK
Ga0325403_106407533300032354XylemVLHVAQPGHWLRPVTRLGWLGLAQPIWIELGPAPKIIKKYKKIEEIEK
Ga0325403_109052013300032354XylemSRVPSVAQPGHWFGPVTGLGWLGLAQPMRAELGPAPKT
Ga0325403_115820623300032354XylemVVRAFAQPGHWLGPVTWLGWLGPVQPMWAELGPAPKILKKIKNKKIKKIGEIEK
Ga0325403_116478713300032354XylemVAQPGHWFGPVTGLGWLGLAQPMWAELDPAPKITKIIKNKKIKKIEKYVCA
Ga0325403_116756513300032354XylemVPSVAQPGHWFGPVTGLGWLGLAQPMWVELGPALKIIKNI
Ga0325401_1001837113300032355XylemVVRAFAQLSHWLGPVTGLGWLGLVQSMWAELGPTPKKMKNRKIKK
Ga0325401_1002332133300032355XylemVPRVAQPGHWLGPVTRLGRLGLAQPMWAELGPAPQIKKKEK
Ga0325401_109940713300032355XylemVLYVAQPGHWLGPVTGLGWAGPAQPMWAELGPAPKKYIKKNRKK
Ga0325401_111186123300032355XylemMHAVAQPGHWFGPVTGLGWLGLAQPMWAELDPAPKITKIIKNNKK
Ga0325400_103753923300032374XylemVAQPGHWFGPVTGLGWLGLAQPIRAELGPASPKNIKNKK
Ga0325400_116547713300032374XylemMRAVAQPGHWFGPVTGLGWLGLAQPMWAELDPAPKITKIIKNKKIKKIEKYVCA
Ga0325400_120900323300032374XylemVAQPGHWFGPVTGLDWLGLAQPMRAELGPAPKIIKKFKKK
Ga0325405_1000301233300032389XylemMAQPGHWFMRVTGLSWLGLAQHMWAELGPAPKHKK
Ga0325405_100100913300032389XylemVPQVAQPGHWFGPVTKLGLLGLAQPMWAELGPAPKITKIIKNIKKYKK
Ga0325405_100897233300032389XylemVLHVAQPGHWLGPVTGLGWLGLAQPIWIELGPAPKIIKNIKKIEEIEK
Ga0325405_101490253300032389XylemVLHVAQPGHWLGPVTGLGRLGWLGLAQPMWAELDPAQKKK
Ga0325405_101971483300032389XylemVPLVFAQPGHWLGPVTKLGWLGLAQPMWAELGPAQKYK
Ga0325405_101992083300032389XylemVPLVFAQPGHWVGPVTELGWLGLAQPMWAELGPAQKYK
Ga0325405_107554123300032389XylemVLHVAQPGHWLGPVTGLGWLGLAQPIWIELGPAPKKKYKKTEK
Ga0325405_111639923300032389XylemMRVVAQPGHWFGLVTGLGWLGLAQPVWAELDPAPKITKIIKNKKIEKIEKYVYA
Ga0325404_100508433300032390XylemMRAVAQPGHWLGPVTGLGRLGLAQPLWAELGPAPKIIKNIKKI
Ga0325404_101317263300032390XylemVPRVAQPGHRLGPVTRLGRLGLAQPMWAELGPAPQKK
Ga0325404_107902323300032390XylemFNSLAQSQPGHWLGPVTGLGWLGPAQPSPCGLGPAQHSPKKIKK
Ga0325411_105036633300032740XylemRVAPPGHWLGPVTRLGRLGLAQPMWAELGPAPQKIKNK
Ga0325414_100339833300032741LeafVPSVAQPGHWLGPVTGLGWLGLAQPMWAKLGPTPKT
Ga0325414_102127163300032741LeafMHAXFGSRVLHVAQPGHWFRPVTGLGWLGLAQPMRAELDPAQKKTKKLKI
Ga0325414_102379853300032741LeafVPHVAQPGHWFRPVTGLGWLGLAQPMWVELGPAQKKKKNK
Ga0325402_100278163300033160XylemVAQPGHWFRPVTGLGWLGLAQPMRAELDPAQKKTKKLKI
Ga0325402_104595043300033160XylemMHAVAQPGHWLGPVTGLGQLGLAQPMWAELGPAQK
Ga0307507_1045253713300033179EctomycorrhizaVPHVAQPGHWLGPVTRLGWLGLAQPMWAELGPAQKIENIK
Ga0307510_1002466063300033180EctomycorrhizaMRAVAQPGHWLGPVTRLGRLGLAQPMWAELGLALKT
Ga0307510_1009608333300033180EctomycorrhizaMAQPGHWLGPVTGLGWLGLAQPMWAELDPAQKIIQKYKKI
Ga0307510_1015005313300033180EctomycorrhizaVLHVAQAGHWLGPVTGPGWLGLAQPMWAELDPAQKK
Ga0307510_1047168413300033180EctomycorrhizaVVRAFAQPGHWLGPVTGLGWLGLVQPMWAELGPAPKKMKNEKIKNRKNRKN
Ga0307510_1048084323300033180EctomycorrhizaMRAVAQPGHWIGPVTGLGWLGLAQPMWAELGPAQKNKK
Ga0325409_083463_3_1223300034901XylemPSVAQPGHWLGPVTGLGWLGLAQPMWVELGPALKIIKNI


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