Metagenome / Metatranscriptome Family F102161

Basic Information
Family ID	F102161
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	64 residues
Representative Sequence	MRLLLACFTLASIAACAAQQSQSEHALVRYDDEWRQKQAILDAEAILQGMAQARQRQEQMARSAR
Number of Associated Samples	82
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	67.33 %
% of genes near scaffold ends (potentially truncated)	39.22 %
% of genes from short scaffolds (< 2000 bps)	91.18 %
Associated GOLD sequencing projects	73
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.46

Most Common Taxonomy
Group	Bacteria (63.725 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (13.725 % of family members)
Environment Ontology (ENVO)	Unclassified (22.549 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (44.118 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 67.74% β-sheet: 0.00% Coil/Unstructured: 32.26%
Feature Viewer

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Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF08544	GHMP_kinases_C	33.33
PF07690	MFS_1	24.51
PF00041	fn3	2.94
PF05853	BKACE	2.94
PF03601	Cons_hypoth698	1.96
PF00908	dTDP_sugar_isom	1.96
PF00732	GMC_oxred_N	1.96
PF13489	Methyltransf_23	0.98
PF00512	HisKA	0.98
PF00389	2-Hacid_dh	0.98
PF12146	Hydrolase_4	0.98
PF00903	Glyoxalase	0.98
PF13670	PepSY_2	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG3246	Uncharacterized conserved protein, DUF849 family	Function unknown [S]	2.94
COG1898	dTDP-4-dehydrorhamnose 3,5-epimerase or related enzyme	Cell wall/membrane/envelope biogenesis [M]	1.96
COG2303	Choline dehydrogenase or related flavoprotein	Lipid transport and metabolism [I]	1.96
COG2855	Uncharacterized membrane protein YadS, UPF0324 family	Function unknown [S]	1.96

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	63.73 %
Unclassified	root	N/A	36.27 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	63.73 %
Unclassified	root	N/A	36.27 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	63.73 %
Unclassified	root	N/A	36.27 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.27 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	25.49 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	4.90 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.27 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	12.75 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	4.90 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.27 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	8.82 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	4.90 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.27 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	4.90 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	2.94 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	2.94 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.27 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	4.90 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.94 %
Rhodopila	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila	2.94 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001356\|JGI12269J14319_10353173	All Organisms → cellular organisms → Bacteria	517	Open in IMG/M
3300002568\|C688J35102_120768161	All Organisms → cellular organisms → Bacteria → Proteobacteria	1526	Open in IMG/M
3300003219\|JGI26341J46601_10018443	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	2288	Open in IMG/M
3300004092\|Ga0062389_100092701	All Organisms → cellular organisms → Bacteria	2639	Open in IMG/M
3300004152\|Ga0062386_100707266	All Organisms → cellular organisms → Bacteria	827	Open in IMG/M
3300004152\|Ga0062386_101807220	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	510	Open in IMG/M
3300005331\|Ga0070670_100910650	All Organisms → cellular organisms → Bacteria → Proteobacteria	797	Open in IMG/M
3300005332\|Ga0066388_108602185	Not Available	508	Open in IMG/M
3300005333\|Ga0070677_10347453	Not Available	767	Open in IMG/M
3300005335\|Ga0070666_10683170	All Organisms → cellular organisms → Bacteria → Proteobacteria	752	Open in IMG/M
3300005340\|Ga0070689_100822817	Not Available	818	Open in IMG/M
3300005434\|Ga0070709_10028079	All Organisms → cellular organisms → Bacteria	3353	Open in IMG/M
3300005437\|Ga0070710_10328848	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1006	Open in IMG/M
3300005531\|Ga0070738_10326806	Not Available	631	Open in IMG/M
3300005543\|Ga0070672_101032080	Not Available	729	Open in IMG/M
3300005578\|Ga0068854_101141798	Not Available	696	Open in IMG/M
3300005764\|Ga0066903_100763678	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1720	Open in IMG/M
3300005937\|Ga0081455_10990021	Not Available	520	Open in IMG/M
3300006028\|Ga0070717_10093500	All Organisms → cellular organisms → Bacteria → Proteobacteria	2542	Open in IMG/M
3300006028\|Ga0070717_10153616	All Organisms → cellular organisms → Bacteria	1993	Open in IMG/M
3300006028\|Ga0070717_10503356	All Organisms → cellular organisms → Bacteria → Proteobacteria	1095	Open in IMG/M
3300006050\|Ga0075028_100058328	All Organisms → cellular organisms → Bacteria	1876	Open in IMG/M
3300006052\|Ga0075029_100595875	All Organisms → cellular organisms → Bacteria	738	Open in IMG/M
3300006174\|Ga0075014_100108893	All Organisms → cellular organisms → Bacteria	1302	Open in IMG/M
3300006755\|Ga0079222_10177871	All Organisms → cellular organisms → Bacteria → Proteobacteria	1249	Open in IMG/M
3300006806\|Ga0079220_11178979	All Organisms → cellular organisms → Bacteria → Proteobacteria	629	Open in IMG/M
3300006881\|Ga0068865_101589729	Not Available	587	Open in IMG/M
3300006904\|Ga0075424_102496282	All Organisms → cellular organisms → Bacteria	541	Open in IMG/M
3300009177\|Ga0105248_12803576	Not Available	556	Open in IMG/M
3300009545\|Ga0105237_10999182	Not Available	843	Open in IMG/M
3300010361\|Ga0126378_11165479	All Organisms → cellular organisms → Bacteria	869	Open in IMG/M
3300010375\|Ga0105239_10368193	All Organisms → cellular organisms → Bacteria → Proteobacteria	1624	Open in IMG/M
3300010375\|Ga0105239_10876411	All Organisms → cellular organisms → Bacteria	1030	Open in IMG/M
3300010375\|Ga0105239_12164868	Not Available	646	Open in IMG/M
3300010376\|Ga0126381_101468360	Not Available	985	Open in IMG/M
3300010376\|Ga0126381_103166481	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	651	Open in IMG/M
3300010376\|Ga0126381_103898881	Not Available	582	Open in IMG/M
3300010379\|Ga0136449_101458586	All Organisms → cellular organisms → Bacteria	1051	Open in IMG/M
3300010379\|Ga0136449_102674722	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	709	Open in IMG/M
3300010396\|Ga0134126_11230903	All Organisms → cellular organisms → Bacteria → Proteobacteria	831	Open in IMG/M
3300012212\|Ga0150985_104708369	Not Available	1417	Open in IMG/M
3300012469\|Ga0150984_111569319	All Organisms → cellular organisms → Bacteria	841	Open in IMG/M
3300012958\|Ga0164299_10242052	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1072	Open in IMG/M
3300012960\|Ga0164301_11430581	Not Available	566	Open in IMG/M
3300012984\|Ga0164309_10450094	All Organisms → cellular organisms → Bacteria → Proteobacteria	973	Open in IMG/M
3300013102\|Ga0157371_11151147	All Organisms → cellular organisms → Bacteria → Proteobacteria	596	Open in IMG/M
3300013296\|Ga0157374_10388325	All Organisms → cellular organisms → Bacteria → Proteobacteria	1391	Open in IMG/M
3300014497\|Ga0182008_10091031	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1504	Open in IMG/M
3300014968\|Ga0157379_12283491	Not Available	538	Open in IMG/M
3300015371\|Ga0132258_10294258	All Organisms → cellular organisms → Bacteria	3990	Open in IMG/M
3300015371\|Ga0132258_12600242	Not Available	1264	Open in IMG/M
3300015374\|Ga0132255_101485909	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1025	Open in IMG/M
3300015374\|Ga0132255_103606614	Not Available	658	Open in IMG/M
3300016294\|Ga0182041_10204928	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1574	Open in IMG/M
3300016294\|Ga0182041_11337752	Not Available	656	Open in IMG/M
3300016357\|Ga0182032_11847058	Not Available	528	Open in IMG/M
3300016371\|Ga0182034_10475411	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1038	Open in IMG/M
3300016371\|Ga0182034_11537668	Not Available	583	Open in IMG/M
3300016387\|Ga0182040_10794070	All Organisms → cellular organisms → Bacteria	780	Open in IMG/M
3300016387\|Ga0182040_11750608	Not Available	531	Open in IMG/M
3300016404\|Ga0182037_10336030	Not Available	1226	Open in IMG/M
3300016422\|Ga0182039_12184385	Not Available	511	Open in IMG/M
3300017792\|Ga0163161_11234020	Not Available	648	Open in IMG/M
3300018067\|Ga0184611_1248973	Not Available	628	Open in IMG/M
3300018469\|Ga0190270_10760470	Not Available	970	Open in IMG/M
3300020582\|Ga0210395_10020385	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4879	Open in IMG/M
3300021374\|Ga0213881_10149525	All Organisms → cellular organisms → Bacteria	1023	Open in IMG/M
3300021377\|Ga0213874_10017549	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1921	Open in IMG/M
3300021388\|Ga0213875_10096448	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1379	Open in IMG/M
3300021403\|Ga0210397_10788224	All Organisms → cellular organisms → Bacteria	733	Open in IMG/M
3300021479\|Ga0210410_10495624	All Organisms → cellular organisms → Bacteria	1091	Open in IMG/M
3300022467\|Ga0224712_10546349	All Organisms → cellular organisms → Bacteria → Proteobacteria	563	Open in IMG/M
3300025893\|Ga0207682_10390067	Not Available	658	Open in IMG/M
3300025898\|Ga0207692_10363298	Not Available	895	Open in IMG/M
3300025915\|Ga0207693_10247132	All Organisms → cellular organisms → Bacteria	1400	Open in IMG/M
3300025928\|Ga0207700_11014406	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	743	Open in IMG/M
3300025929\|Ga0207664_10967263	All Organisms → cellular organisms → Bacteria	763	Open in IMG/M
3300025929\|Ga0207664_11745804	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	545	Open in IMG/M
3300026075\|Ga0207708_11240560	All Organisms → cellular organisms → Bacteria	652	Open in IMG/M
3300026078\|Ga0207702_10373108	All Organisms → cellular organisms → Bacteria	1370	Open in IMG/M
3300026078\|Ga0207702_10721747	All Organisms → cellular organisms → Bacteria	983	Open in IMG/M
3300026121\|Ga0207683_11762032	Not Available	568	Open in IMG/M
3300027824\|Ga0209040_10001221	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	20251	Open in IMG/M
3300027905\|Ga0209415_10617507	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila	798	Open in IMG/M
3300027905\|Ga0209415_10801819	All Organisms → cellular organisms → Bacteria	656	Open in IMG/M
3300027905\|Ga0209415_10846567	All Organisms → cellular organisms → Bacteria	630	Open in IMG/M
3300028381\|Ga0268264_12206118	All Organisms → cellular organisms → Bacteria	558	Open in IMG/M
3300028381\|Ga0268264_12284119	All Organisms → cellular organisms → Bacteria	548	Open in IMG/M
3300031543\|Ga0318516_10332008	All Organisms → cellular organisms → Bacteria	878	Open in IMG/M
3300031572\|Ga0318515_10646550	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	561	Open in IMG/M
3300031679\|Ga0318561_10674754	Not Available	568	Open in IMG/M
3300031744\|Ga0306918_10944463	Not Available	671	Open in IMG/M
3300031751\|Ga0318494_10552709	All Organisms → cellular organisms → Bacteria	672	Open in IMG/M
3300031782\|Ga0318552_10698350	Not Available	517	Open in IMG/M
3300031890\|Ga0306925_10718180	Not Available	1044	Open in IMG/M
3300031890\|Ga0306925_11866046	All Organisms → cellular organisms → Bacteria	573	Open in IMG/M
3300031954\|Ga0306926_11866005	All Organisms → cellular organisms → Bacteria	680	Open in IMG/M
3300032001\|Ga0306922_10726208	Not Available	1044	Open in IMG/M
3300032042\|Ga0318545_10336726	Not Available	543	Open in IMG/M
3300032160\|Ga0311301_10233503	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila	3071	Open in IMG/M
3300032160\|Ga0311301_10902951	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila	1190	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	67.65%
Host-Associated	Host-Associated	32.35%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	58.82%
Plants	Host-Associated → Plants	32.35%
Aquatic	Environmental → Aquatic	8.82%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	57.84%
Rhizosphere	Host-Associated → Plants → Rhizosphere	16.67%
Rhizoplane	Host-Associated → Plants → Rhizoplane	13.73%
Freshwater	Environmental → Aquatic → Freshwater	4.90%
Sediment	Environmental → Aquatic → Sediment	3.92%
Roots	Host-Associated → Plants → Roots	1.96%
Rock-Dwelling (Subaerial Biofilms)	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms)	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	43.14%
Loam	Environmental → Terrestrial → Soil → Loam	14.71%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	10.78%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	7.84%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.88%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	4.90%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.90%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.92%
Unclassified	Host-Associated → Plants → Roots → Unclassified	1.96%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified	0.98%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.98%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	22.55%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	18.63%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	11.76%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	10.78%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	7.84%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.88%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	4.90%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.90%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.92%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.96%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.96%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	1.96%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.98%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified	0.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	13.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	8.82%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	8.82%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	7.84%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	4.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.92%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.92%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	3.92%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.94%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.96%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.96%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	1.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.96%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.98%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.98%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.98%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.98%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.98%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.98%
Exposed Rock	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Exposed Rock	0.98%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.98%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.98%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.98%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.98%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001356	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300003219	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005333	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG	Host-Associated	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005531	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen12_06102014_R2	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018067	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coex	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021374	Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R08	Environmental	Open in IMG/M
3300021377	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7	Host-Associated	Open in IMG/M
3300021388	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8	Host-Associated	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300022467	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025893	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027824	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032042	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12269J14319_103531731	3300001356	Peatlands Soil	MRLVAALLTFACLSACDTGPTHSEQALVRDGDWRQRQAVLDAEAILQGMAQARQQAEEMARTAP*
C688J35102_1207681612	3300002568	Soil	MPKMRLLLACFSLASIAACAAQQSQSEHALARYNDEWREKQVILDAEAILKGMAQARQRQEQVARSAR*
JGI26341J46601_100184432	3300003219	Bog Forest Soil	MRLIAALLTIACLAACDMAPTQSEHALVRYDDEWRQRQAVLDAEAILQGMEQARQRQEALARTAR*
Ga0062389_1000927012	3300004092	Bog Forest Soil	MRSFTVLLTVACLAACGMEQTQSEHALVGYDNEWRQRQAGLDADAIMQGMAQARQRQEELARSAR*
Ga0062386_1007072662	3300004152	Bog Forest Soil	MRLIAALLTVACLVACGMTQTQSEHALLGYDDEWRQQQAVLDAEAILQGMQQARERQEALARTAR*
Ga0062386_1018072201	3300004152	Bog Forest Soil	MRLPAALPMVACLVACAVAQTQSEHSLVRYDDEWRQRQAVLDAEAIMRGMEQARQ
Ga0070670_1009106502	3300005331	Switchgrass Rhizosphere	MPKMRLLLACVTLACTAACAAQQSQSEHALVRYDDEWRQKQAILDAEAILQGMAQARQRQEQVARSAR*
Ga0066388_1086021851	3300005332	Tropical Forest Soil	MPKMRLLLACFTLAGITACATQQSQSEHALVRYDDEWRQKQAILDAEAILQGMAQARQRQEQMARSAR*
Ga0070677_103474531	3300005333	Miscanthus Rhizosphere	MRLAAALLTISCLAACGTASAPPARALVRYDDEWRQRQAVLDADAIMQGMAMARQRRGEIARTAR*
Ga0070666_106831702	3300005335	Switchgrass Rhizosphere	MRPVVSLLIVGCLAACHAESTQTERSLVGYDNEWRQRQAILDAEAIMQGMAQARERADQLARTSR*
Ga0070689_1008228171	3300005340	Switchgrass Rhizosphere	PVVSLLIVGCLAACHAESTQTERSLVGYDNEWRQRQAILDAEAIMQGMAQARERADQLARTSR*
Ga0070709_100280792	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MRPIIALLTVACLAACGATQSESEHALVRHDDEWRQQQAVLDAEAILQGMAQARQRQQELARTAR*
Ga0070710_103288482	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	CFTLASIAACAAQQSQSEHALVRYDDEWRQKQAILDAEAILQGMAQARQRQEQMARSAR*
Ga0070738_103268061	3300005531	Surface Soil	VAACGGTPTQSEHALVRYNDEWRRHQATLDVEAILQGMAQERSRQEELARSAR*
Ga0070672_1010320801	3300005543	Miscanthus Rhizosphere	LIILALAHGLSAMRLAAALLTISCLAACGTASAPPARALVRYDDEWRQRQAVLDADAIMQGMAMARQRRGEIARTAR*
Ga0068854_1011417982	3300005578	Corn Rhizosphere	GITACATQQSQSEHALVRYDDEWRQKQAVLDAEAILQGMAQARQRQEQMARSAR*
Ga0066903_1007636782	3300005764	Tropical Forest Soil	MRLVAAMITVTCLTACGASQTQSEHALVRHDDEWRQQQAVLDAEAILKGMAQARQRQEELARSAR*
Ga0081455_109900212	3300005937	Tabebuia Heterophylla Rhizosphere	MRLAAVLLTMICLAACGSTTSSSGQALERYDDEWRQREAALDAEVILEGMAQARQRREAIARTAR*
Ga0070717_100935002	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MRPFTVLLTVACLAACGAEQTQSEHALVRYDNDWRQRQAVLDADAIMQGMAQARQRQEELARSAR*
Ga0070717_101536162	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MRLLLACFTLASIAACAAQQSQSEHALVRYDDEWRQKQAILDAEAILQGMAQARQRQEQMARSAR*
Ga0070717_105033562	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MPKMRLLLACFTLASIAACANQPSQSEHALVRYDDEWRQKQVILDTEAILQGMAQARQRQEQMARSAR*
Ga0075028_1000583283	3300006050	Watersheds	MRPFLVLLTVACLAACGTEQTQSEHALVRYDNDWRQRQAVLDADAIMQGMAQARQRQEQLARSAR*
Ga0075029_1005958752	3300006052	Watersheds	LAACGAEQTQSEHALVRYDNDWRQRQAVLDADAIMQGMAQARQRQEELARSAR*
Ga0075014_1001088931	3300006174	Watersheds	MRLIAALLTVACLVACGMTQTQSEHALLGYDDEWRQQQAVLDAEAILQGMQQARE
Ga0079222_101778712	3300006755	Agricultural Soil	MPKMRLLLACFTLAGITACATQQSQSEHALVRYDDEWRQKQAVLDAEAILQGMAQARQRQEQMARSAR*
Ga0079220_111789791	3300006806	Agricultural Soil	MPKMRLLLACVTLAYSAACAAQQSQSEHALVRYDDEWRQKQAILDAEAILQGMAQARQRQEQVACSAR*
Ga0068865_1015897291	3300006881	Miscanthus Rhizosphere	SCLAACGTASAPPARALVRYDDEWRQRQAVLDADAIMQGMAMARQRRGEIARTAR*
Ga0075424_1024962822	3300006904	Populus Rhizosphere	MRPIIALLTVACLAACGATQSESEHALVRHDDEWRQQQAVLDAEAILQGMAQA
Ga0105248_128035762	3300009177	Switchgrass Rhizosphere	MPAMRPIIALLLVACLAACGAAQSQSEHALVRHDDEWRQQQAVLDAEAILQGMAQARQRQQELARTAR*
Ga0105237_109991822	3300009545	Corn Rhizosphere	GCLAACHAESTQTERSLVGYDNEWRQRQAILDAEAIMQGMAQARERADQLARTSR*
Ga0126378_111654792	3300010361	Tropical Forest Soil	MRTMRLIAALLTIACLAACSLTQTQSEHALVRYDDEWRQRQAVLDAEAILQGMQQARDRQEALARARSSR*
Ga0105239_103681932	3300010375	Corn Rhizosphere	MPNMRLLLACFTLVGIAACATQQSPSEHALVRYDDEWRQKQAILDAEAILQGMAQARQRQEQMARSAR*
Ga0105239_108764112	3300010375	Corn Rhizosphere	MRSIIALLTVACIAACGATQSESEHALVRHDDEWRQQQAVLDAEAILQGMAQARQRQQELARTAR*
Ga0105239_121648682	3300010375	Corn Rhizosphere	PMRPVVSLLIVGCLAACHAESTQTERSLVGYDNEWRQRQAILDAEAIMQGMAQARERADQLARTSR*
Ga0126381_1014683602	3300010376	Tropical Forest Soil	MRYIPALLTIACLAACNTSQTQSENALVRYDNEWRQRQAVLDAEAILQGMAQARQRQQELARSAP*
Ga0126381_1031664812	3300010376	Tropical Forest Soil	MRLAAALLSTLCVVGCANSAPTQSEHALVRYDDEWRKRQAVLDAEAILQGMAQARERREQLARTAR*
Ga0126381_1038988811	3300010376	Tropical Forest Soil	MRFAAALFTFACLSACSTVPTQSEHALMRNDEWRQRQAQQDADAILRGMAQARQSQPELARSAR*
Ga0136449_1014585862	3300010379	Peatlands Soil	MRSFTVLLTVACLAACGMEQTQSEHALVRYDNEWRQRQAGLDADAIMQGMAQARQRQEELARSAQ*
Ga0136449_1026747222	3300010379	Peatlands Soil	MRLVAALLTFACLSACDSAPTHSERALVRDGDWLQRQAVLDAEAILRGMAQARQEAEELARTAR*
Ga0134126_112309031	3300010396	Terrestrial Soil	GVGRLQPAGRGKWMPNMRLLLACFTLVGIAACATQQSQSEHALVRYDDEWRQKQAILDAEAILQGMAQARQRQEQMARSAR*
Ga0150985_1047083691	3300012212	Avena Fatua Rhizosphere	QWMPKMRLLLACFSLASIAACAAQQSQSEHALARYNDEWREKQVILDAEAILKGMAQARQRQEQVARSAR*
Ga0150984_1115693192	3300012469	Avena Fatua Rhizosphere	GRGQWMPKMRLLLACFSLASIAACAAQQSQSEHALARYNDEWREKQVILDAEAILKGMAQARQRQEQVARSAR*
Ga0164299_102420522	3300012958	Soil	IIALLMVACLAACGATQSESEHALVRHDDEWRQQQAVLDAEAILQGMAQARQRQQELARTAR*
Ga0164301_114305812	3300012960	Soil	MPNMRLLLACFTLAGIAACATQQSPSEHALVRYDDEWRQKQAILDAEAILQGMAQARQRQEQMARSAR*
Ga0164309_104500942	3300012984	Soil	MPAMRPIIALLTVACLAACGATQSESEHALVRHDDEWRQQQAVLDAEAILQGMAQARQRQQELARTAR*
Ga0157371_111511472	3300013102	Corn Rhizosphere	RGKWMPNMRLLLACFTLVGIAACATQQSQSEHALVRYDDEWRQKQAILDAEAILQGMAQARQRQEQMARSAR*
Ga0157374_103883252	3300013296	Miscanthus Rhizosphere	MPNMRLLLACFTLVGIAACATQQSQSEHALVRYDDEWRQKQAILDAEAILQGMAQARQRQEQMARSAR*
Ga0157375_137692972	3300013308	Miscanthus Rhizosphere	AQQSPSEHALVRYDDEWRQKQAILDAEAILQGMAQARQRQEQVARSAR*
Ga0182008_100910312	3300014497	Rhizosphere	MRLLLACFTLASIAACAAQQSQSEHALVRYDDEWRQKQAILDAEAILQGMAQARQRQEQVARSAR*
Ga0157379_122834912	3300014968	Switchgrass Rhizosphere	MRLLLACVTLACTAACAAQQSQSEHALVRYDDEWRQKQALRDADAIMRGMQQARERREMLARSAR*
Ga0132258_102942583	3300015371	Arabidopsis Rhizosphere	MRMTALLLMLAVLAACGAEQTQSEHALVRYDDEWRQRQAVLDAEAIMRGMAQARERYQELARSAR*
Ga0132258_126002421	3300015371	Arabidopsis Rhizosphere	LLLACFTLASIAACAAQQSQSEHALVRYDDEWRQKQAILDVEAILQGMAQARQRQEQMARSAR*
Ga0132255_1014859092	3300015374	Arabidopsis Rhizosphere	CFTLAGIAACATQQSPSEHALVRYDDEWRQKQAILDAEAILQGMAQARQRQEQMARSAR*
Ga0132255_1036066141	3300015374	Arabidopsis Rhizosphere	MRLVAALLTVICLAACGVVPTQSEQALVQPDEWRQRQADLDVQPILYGMAQARQRSETLARSSR*
Ga0182041_102049282	3300016294	Soil	MRLIAALLTIACLAACSLTQAQSEHELVRYDDEWRQRQAVLDAEAILQGMQQARDRQEALARARSSR
Ga0182041_113377521	3300016294	Soil	MTTAPFAAFLSVACLAACSSVQTQSDHALVRHDDEWYKRQAVLDAAAIMQGMAEARRRQELARTGR
Ga0182032_118470581	3300016357	Soil	PGSIDGSQTMTPFAALLSVACLAACGSAQTQSEHALVRYDDEWRQRQAVLDAEAIMQGMAQARQRREELARTAR
Ga0182034_104754112	3300016371	Soil	MRLIVALLTIACLAACSLTQTQSEHALVRYDDEWRQRQAVLDAEAILQGMQQARDRQEALARARSSR
Ga0182034_115376681	3300016371	Soil	MTTLFAAFLSVACLVACGSAQTQFEHPLVRHDDDWYRRQAVVDAEAIMEGIAQARQRQGALARTAR
Ga0182040_107940701	3300016387	Soil	MRLIAALLTIAWLADCSLTQAQSEHELVRYDDEWRQRQAVLDAEAILQGMQQARDRQESLARARRSR
Ga0182040_117506082	3300016387	Soil	MRLIAALLTVASLNGCNGTQTQSEHALVGNDQEMRHRLAVMDVEAILQGMAQARQRAELLARTAR
Ga0182037_103360302	3300016404	Soil	CGLTQAQSEHELVRYDDEWRQRQAVLDAEAILQGMQQARERQEALARARSSR
Ga0182039_121843852	3300016422	Soil	MTTAPFAAFLSVACLAACSSVQTQSDHALVRHDDEWYKRQAVLDAAAIMQGMAEARR
Ga0163161_112340201	3300017792	Switchgrass Rhizosphere	LIILALAHGLSAMRLAAALLTISCLAACGTASAPPARALVRYDDEWRQRQAVLDADAIMQGMAMARQRRGEIARTAR
Ga0184611_12489731	3300018067	Groundwater Sediment	ILALAHGLSAMRLAAALLTISCLAACGTASAPPARALVRYDDEWRQRQAVLDADAIMQGMAMARQRRGEIARTAR
Ga0190270_107604701	3300018469	Soil	LVVALLTIACVSACGVQRSQSEHALVRQDNDVRQRQAVLNAEAILRGMAQARERQELMARTAR
Ga0210395_100203852	3300020582	Soil	MRSFTVLLTVACLAACGMEQTQSEHALVGYDNEWRQRQAGLDADAIMQGMAQARQRQEELARSAR
Ga0213881_101495252	3300021374	Exposed Rock	MRLLLAFLAVACLSACGTQQSQSEHELVRYDDEWRHRQAVLDAEAILQGMAQARQSREQMARTAR
Ga0213874_100175493	3300021377	Plant Roots	MADMRPLLAFFAVACLSACGAQQSQSEHELVRYDDEWRQNQAVLDAEAILQGMAQARQSREQMARTAR
Ga0213875_100964482	3300021388	Plant Roots	MANMRPCLALFAVACLAACGTQQSQSEHELVRYDDEWRQKQAVLDADAILQGMAQARQSREQLARTAR
Ga0210397_107882242	3300021403	Soil	MRPFTVLLTVACLAACGAEQTQSEHALVRYDNDWRQRQAVLDADAIMQGMAQARQRQEELARSAR
Ga0210410_104956242	3300021479	Soil	MRSFTVLLTVACLAACGMEQTQSEHALVGYDNEWRQRQAGLDADAIMQGMAQARQ
Ga0224712_105463492	3300022467	Corn, Switchgrass And Miscanthus Rhizosphere	WMPNMRLLLACFTLVGIAACATQQSQSEHALVRYDDEWRQKQAILDAEAILQGMAQARQRQEQMARSAR
Ga0207682_103900672	3300025893	Miscanthus Rhizosphere	MRLAAALLTISCLAACGTASAPPARALVRYDDEWRQRQAVLDADAIMQGMAMARQRRGEIARTAR
Ga0207692_103632981	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	CFTLASIAACAAQQSQSEHALVRYDDEWRQKQAILDAEAILQGMAQARQRQEQMARSAR
Ga0207693_102471322	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MRLLLACFTLASIAACAAQQSQSEHALVRYDDEWRQKQAILDAEAILQGMAQARQRQEQMAR
Ga0207700_110144061	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MPKMRLLLACFTLASIAACANQPSQSEHALVRYDDEWRQKQVILDTEAILQGMAQARQRQEQMARSAR
Ga0207664_109672632	3300025929	Agricultural Soil	MPKMRLLLACFTLASIAACANQQSQSEHALVRYDDEWRQKQAILDVEAILQGMAQARQRQEQMARSAR
Ga0207664_117458041	3300025929	Agricultural Soil	MRLLLACFTLASIAACAAQQSQSEHALVRYDDEWRQKQAILDAEAILQGMAQARQRQEQMARSAR
Ga0207708_112405602	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MDAKMRLLLACFSLASIAACAAQQSQAEHALARYNDEWREKQVILDAEAILKGMAQARQRQEQVARSAR
Ga0207702_103731082	3300026078	Corn Rhizosphere	MPKMRLLLACVTLACTAACAAQQSQSEHALVRYDDEWRQKQAILDAEAILQGMAQARQRQEQVARSAR
Ga0207702_107217472	3300026078	Corn Rhizosphere	MPNMRLLLACFTLVGIAACATQQSQSEHALVRYDDEWRQKQAILDAEAILQGMAQARQRQEQMARSAR
Ga0207683_117620322	3300026121	Miscanthus Rhizosphere	ALAHGLSAMRLAAALLTISCLAACGTASAPPARALVRYDDEWRQRQAVLDADAIMQGMAMARQRRGEIARTAR
Ga0209040_1000122114	3300027824	Bog Forest Soil	MRLIAALLTIACLAACDMAPTQSEHALVRYDDEWRQRQAVLDAEAILQGMEQARQRQEALARTAR
Ga0209415_106175072	3300027905	Peatlands Soil	MRLVAALLTFACLSACDTAPTRSEQALVRDGEWRQRQVVLDAEAILQGMAQARQQTGELAGTVR
Ga0209415_108018191	3300027905	Peatlands Soil	MRLVAALLTFACLSACDTGPTHSEQALMRDGDWRQRQAVLDAEAILQGMAQAR
Ga0209415_108465672	3300027905	Peatlands Soil	MRLVAALLTFACLSACDTGPTHSEQALVRDGDWRQRQAVLDAEAILQGMAQAR
Ga0268264_122061181	3300028381	Switchgrass Rhizosphere	MRPVVSLLIVGCLAACHAESTQTERSLVGYDNEWRQRQAILDAEAIMQGMAQARERADQLARTS
Ga0268264_122841192	3300028381	Switchgrass Rhizosphere	MPNMRLLLACFTLAGIAACATQQSPSEHALVRYDDEWRQKQAILDAEAILQGMAQARQRQEQM
Ga0318516_103320081	3300031543	Soil	MRLIAALLTVACLNGCNGTQTQSEHALVGNDQEMRHRLAVMDVEAILQGMAQARQRAELLARTAR
Ga0318515_106465501	3300031572	Soil	MRLIAALLTVACLNGCNGTQTQSEHALVGNDQEMRHRLAVMDVEAILQGMAQARQRAELLAR
Ga0318561_106747542	3300031679	Soil	LNGCNGTQTQSEHALVGNDQEMRHRLAVMDVEAILQGMAQARQRAELLARTAR
Ga0306918_109444632	3300031744	Soil	AFLSVACLAACSSVQTQSDHALVRHDDEWYKRQAVLDAAAIMQGMAEARRRQELARTGR
Ga0318494_105527091	3300031751	Soil	MRLIAALLTVACLNGCNGTQTQSEHALVGNDQEMRHRLAVMDVEAILQGMAQARQRAELL
Ga0318552_106983501	3300031782	Soil	NGTQTQSEHALVGNDQEMRHRLAVMDVEAILQGMAQARQRAELLARTAR
Ga0306925_107181802	3300031890	Soil	MRLIAALLTIACLAACSLTQTQSEHALVRYDDEWRQRQAVLDAEAILQGMQQARDRQEALARARSSR
Ga0306925_118660462	3300031890	Soil	MTPFAALLSVACLAACGSAQTQSEHALVRYDDEWRQRQAVLDAEAIMQGMAQARQRREE
Ga0306926_118660052	3300031954	Soil	MRLIAALLTVACLNGCNGTQTQSEHALVGNDQEMRHRLAVMDVEAILQGMAQARQRAELLARTA
Ga0306922_107262083	3300032001	Soil	MRLIAALLTVACLNGCNGTQTQSEQALVGNDQEMRHRLAVMDVEAILQGMAQARQRAELLARTAR
Ga0318545_103367261	3300032042	Soil	CLNGCNGTQTQSEHALVGNDQEMRHRLAVMDVEAILQGMAQARQRAELLARTAR
Ga0311301_102335033	3300032160	Peatlands Soil	MRLVAALLTFACLSACDTGPTHSEQALVRDGDWRQRQAVLDAEAILQGMAQARQQAEEMARTAP
Ga0311301_109029512	3300032160	Peatlands Soil	MRLVAALLTFACLSACDSAPTHSERALVRDGDWLQRQAVLDAEAILRGMAQARQEAEELARTAR

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.46
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.46
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F102161

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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