Metagenome / Metatranscriptome Family F102129

Basic Information
Family ID	F102129
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	42 residues
Representative Sequence	IASRYLGPEAGAAYAERGNDDLLIRLEPGDLRAWDFADDL
Number of Associated Samples	95
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	2.94 %
% of genes near scaffold ends (potentially truncated)	96.08 %
% of genes from short scaffolds (< 2000 bps)	92.16 %
Associated GOLD sequencing projects	94
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.39

Most Common Taxonomy
Group	Bacteria (87.255 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (11.765 % of family members)
Environment Ontology (ENVO)	Unclassified (25.490 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (56.863 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 14.71% β-sheet: 17.65% Coil/Unstructured: 67.65%
Feature Viewer

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Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF12833	HTH_18	7.84
PF13091	PLDc_2	4.90
PF01872	RibD_C	2.94
PF08281	Sigma70_r4_2	1.96
PF00903	Glyoxalase	1.96
PF03992	ABM	1.96
PF08241	Methyltransf_11	1.96
PF07883	Cupin_2	1.96
PF13539	Peptidase_M15_4	1.96
PF02592	Vut_1	0.98
PF02361	CbiQ	0.98
PF00392	GntR	0.98
PF08450	SGL	0.98
PF04978	DUF664	0.98
PF14742	GDE_N_bis	0.98
PF12724	Flavodoxin_5	0.98
PF07969	Amidohydro_3	0.98
PF06745	ATPase	0.98
PF07676	PD40	0.98
PF13508	Acetyltransf_7	0.98
PF12681	Glyoxalase_2	0.98
PF08240	ADH_N	0.98
PF07690	MFS_1	0.98
PF02899	Phage_int_SAM_1	0.98
PF08447	PAS_3	0.98
PF09285	Elong-fact-P_C	0.98
PF01810	LysE	0.98
PF12802	MarR_2	0.98
PF00072	Response_reg	0.98
PF00106	adh_short	0.98
PF13191	AAA_16	0.98
PF00719	Pyrophosphatase	0.98
PF00891	Methyltransf_2	0.98
PF00501	AMP-binding	0.98
PF00196	GerE	0.98
PF13432	TPR_16	0.98
PF04229	GrpB	0.98
PF02538	Hydantoinase_B	0.98
PF04075	F420H2_quin_red	0.98
PF01042	Ribonuc_L-PSP	0.98
PF01546	Peptidase_M20	0.98
PF01636	APH	0.98
PF01243	Putative_PNPOx	0.98
PF04261	Dyp_perox	0.98
PF13302	Acetyltransf_3	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	2.94
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	2.94
COG0146	N-methylhydantoinase B/oxoprolinase/acetone carboxylase, alpha subunit	Amino acid transport and metabolism [E]	1.96
COG0221	Inorganic pyrophosphatase	Energy production and conversion [C]	0.98
COG0251	Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 family	Defense mechanisms [V]	0.98
COG0619	ECF-type transporter transmembrane protein EcfT	Coenzyme transport and metabolism [H]	0.98
COG1738	Queuosine precursor transporter YhhQ, DUF165 family	Translation, ribosomal structure and biogenesis [J]	0.98
COG2320	GrpB domain, predicted nucleotidyltransferase, UPF0157 family	General function prediction only [R]	0.98
COG2837	Periplasmic deferrochelatase/peroxidase EfeB	Inorganic ion transport and metabolism [P]	0.98
COG3386	Sugar lactone lactonase YvrE	Carbohydrate transport and metabolism [G]	0.98
COG3391	DNA-binding beta-propeller fold protein YncE	General function prediction only [R]	0.98
COG4973	Site-specific recombinase XerC	Replication, recombination and repair [L]	0.98
COG4974	Site-specific recombinase XerD	Replication, recombination and repair [L]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	87.25 %
Unclassified	root	N/A	12.75 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	87.25 %
Unclassified	root	N/A	12.75 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	87.25 %
Unclassified	root	N/A	12.75 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	76.47 %
Unclassified	root	N/A	12.75 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.98 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	38.24 %
Unclassified	root	N/A	12.75 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.98 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.98 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	24.51 %
Unclassified	root	N/A	12.75 %
Rhodothermaeota	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Rhodothermaeota	0.98 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	0.98 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.98 %

Name	Rank	Taxonomy	Distribution
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	13.73 %
Unclassified	root	N/A	12.75 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	1.96 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.98 %
Rhodothermia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Rhodothermaeota → Rhodothermia	0.98 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.98 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.98 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.98 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	13.73 %
Unclassified	root	N/A	12.75 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	1.96 %
Rhodothermales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Rhodothermaeota → Rhodothermia → Rhodothermales	0.98 %
Micrococcaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae	0.98 %
Solirubrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae	0.98 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.98 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.98 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	13.73 %
Unclassified	root	N/A	12.75 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1.96 %
Salisaetaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Rhodothermaeota → Rhodothermia → Rhodothermales → Salisaetaceae	0.98 %
Solirubrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	0.98 %
Arthrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter	0.98 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.98 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.98 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	13.73 %
Unclassified	root	N/A	12.75 %
Streptomyces alboflavus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces alboflavus	1.96 %
unclassified Solirubrobacter	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter	0.98 %
Longibacter	genus	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Rhodothermaeota → Rhodothermia → Rhodothermales → Salisaetaceae → Longibacter	0.98 %
unclassified Arthrobacter	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → unclassified Arthrobacter	0.98 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.98 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.98 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	13.73 %
Unclassified	root	N/A	12.75 %
Streptomyces alboflavus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces alboflavus	1.96 %
Solirubrobacter sp. CPCC 204708	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter → Solirubrobacter sp. CPCC 204708	0.98 %
Arthrobacter sp. ES1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → unclassified Arthrobacter → Arthrobacter sp. ES1	0.98 %
Longibacter salinarum	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Rhodothermaeota → Rhodothermia → Rhodothermales → Salisaetaceae → Longibacter → Longibacter salinarum	0.98 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.98 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908045\|KansclcFeb2_ConsensusfromContig90376	All Organisms → cellular organisms → Bacteria → Terrabacteria group	647	Open in IMG/M
3300000956\|JGI10216J12902_106275504	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	691	Open in IMG/M
3300001384\|JGI20190J14840_1011197	Not Available	834	Open in IMG/M
3300001686\|C688J18823_10428116	All Organisms → cellular organisms → Bacteria → Terrabacteria group	854	Open in IMG/M
3300002568\|C688J35102_120384259	Not Available	1029	Open in IMG/M
3300004157\|Ga0062590_102908432	All Organisms → cellular organisms → Bacteria → Terrabacteria group	512	Open in IMG/M
3300004643\|Ga0062591_102996706	All Organisms → cellular organisms → Bacteria	501	Open in IMG/M
3300005332\|Ga0066388_100756540	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1571	Open in IMG/M
3300005435\|Ga0070714_100842460	All Organisms → cellular organisms → Bacteria → Terrabacteria group	889	Open in IMG/M
3300005540\|Ga0066697_10236813	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1083	Open in IMG/M
3300005547\|Ga0070693_100543347	All Organisms → cellular organisms → Bacteria → Terrabacteria group	831	Open in IMG/M
3300005556\|Ga0066707_10291884	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1067	Open in IMG/M
3300005598\|Ga0066706_10482151	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	988	Open in IMG/M
3300005764\|Ga0066903_109117488	All Organisms → cellular organisms → Bacteria → Terrabacteria group	501	Open in IMG/M
3300005937\|Ga0081455_10061333	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3165	Open in IMG/M
3300005937\|Ga0081455_10474118	All Organisms → cellular organisms → Bacteria	848	Open in IMG/M
3300006046\|Ga0066652_101828064	All Organisms → cellular organisms → Bacteria → Terrabacteria group	548	Open in IMG/M
3300006573\|Ga0074055_11599866	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces alboflavus	896	Open in IMG/M
3300006575\|Ga0074053_11713542	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces alboflavus	893	Open in IMG/M
3300006605\|Ga0074057_12101419	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2087	Open in IMG/M
3300006791\|Ga0066653_10293746	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	821	Open in IMG/M
3300006804\|Ga0079221_11532054	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	537	Open in IMG/M
3300006852\|Ga0075433_11137182	All Organisms → cellular organisms → Bacteria	678	Open in IMG/M
3300006854\|Ga0075425_101042538	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	932	Open in IMG/M
3300006904\|Ga0075424_101626670	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	685	Open in IMG/M
3300006904\|Ga0075424_102650165	All Organisms → cellular organisms → Bacteria	524	Open in IMG/M
3300006914\|Ga0075436_100767519	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	717	Open in IMG/M
3300006954\|Ga0079219_12004086	All Organisms → cellular organisms → Bacteria	551	Open in IMG/M
3300009098\|Ga0105245_11249730	Not Available	791	Open in IMG/M
3300009137\|Ga0066709_100107459	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3443	Open in IMG/M
3300009522\|Ga0116218_1131086	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1140	Open in IMG/M
3300009553\|Ga0105249_11111897	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	860	Open in IMG/M
3300009553\|Ga0105249_11269037	All Organisms → cellular organisms → Bacteria → Terrabacteria group	808	Open in IMG/M
3300009792\|Ga0126374_11104980	All Organisms → cellular organisms → Bacteria → Terrabacteria group	629	Open in IMG/M
3300009792\|Ga0126374_11429465	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	564	Open in IMG/M
3300010039\|Ga0126309_11193854	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	522	Open in IMG/M
3300010323\|Ga0134086_10039973	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1569	Open in IMG/M
3300010333\|Ga0134080_10556073	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	553	Open in IMG/M
3300010337\|Ga0134062_10419510	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	658	Open in IMG/M
3300010358\|Ga0126370_12338391	All Organisms → cellular organisms → Bacteria → Terrabacteria group	529	Open in IMG/M
3300010359\|Ga0126376_11281399	Not Available	752	Open in IMG/M
3300010361\|Ga0126378_10342157	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1605	Open in IMG/M
3300010366\|Ga0126379_12077080	Not Available	670	Open in IMG/M
3300010375\|Ga0105239_12201834	Not Available	641	Open in IMG/M
3300010400\|Ga0134122_11527383	Not Available	688	Open in IMG/M
3300010401\|Ga0134121_10591350	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1037	Open in IMG/M
3300010401\|Ga0134121_11242996	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter → Solirubrobacter sp. CPCC 204708	747	Open in IMG/M
3300010880\|Ga0126350_11400402	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	954	Open in IMG/M
3300011271\|Ga0137393_10059835	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3007	Open in IMG/M
3300012198\|Ga0137364_10816176	Not Available	705	Open in IMG/M
3300012201\|Ga0137365_10588320	All Organisms → cellular organisms → Bacteria → Terrabacteria group	816	Open in IMG/M
3300012204\|Ga0137374_11161228	All Organisms → cellular organisms → Bacteria → Terrabacteria group	544	Open in IMG/M
3300012207\|Ga0137381_10422110	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1164	Open in IMG/M
3300012351\|Ga0137386_11114430	All Organisms → cellular organisms → Bacteria → Terrabacteria group	556	Open in IMG/M
3300012355\|Ga0137369_10119891	All Organisms → cellular organisms → Bacteria	2129	Open in IMG/M
3300012358\|Ga0137368_10780230	All Organisms → cellular organisms → Bacteria → Terrabacteria group	593	Open in IMG/M
3300012503\|Ga0157313_1014894	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	724	Open in IMG/M
3300012896\|Ga0157303_10007536	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1558	Open in IMG/M
3300012898\|Ga0157293_10011774	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1445	Open in IMG/M
3300012911\|Ga0157301_10205515	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	666	Open in IMG/M
3300012986\|Ga0164304_11682857	Not Available	530	Open in IMG/M
3300013308\|Ga0157375_12845101	All Organisms → cellular organisms → Bacteria → Terrabacteria group	578	Open in IMG/M
3300014166\|Ga0134079_10384998	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	648	Open in IMG/M
3300015200\|Ga0173480_10699181	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	635	Open in IMG/M
3300017995\|Ga0187816_10437914	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → unclassified Arthrobacter → Arthrobacter sp. ES1	584	Open in IMG/M
3300018001\|Ga0187815_10487000	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	528	Open in IMG/M
3300018433\|Ga0066667_11156833	Not Available	671	Open in IMG/M
3300018482\|Ga0066669_11404625	All Organisms → cellular organisms → Bacteria → Terrabacteria group	633	Open in IMG/M
3300020581\|Ga0210399_10271898	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1414	Open in IMG/M
3300021181\|Ga0210388_10731014	All Organisms → cellular organisms → Bacteria → Terrabacteria group	861	Open in IMG/M
3300021478\|Ga0210402_10437574	All Organisms → cellular organisms → Bacteria	1215	Open in IMG/M
3300023062\|Ga0247791_1093319	All Organisms → cellular organisms → Bacteria → Terrabacteria group	505	Open in IMG/M
3300025321\|Ga0207656_10293776	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Rhodothermaeota → Rhodothermia → Rhodothermales → Salisaetaceae → Longibacter → Longibacter salinarum	803	Open in IMG/M
3300025905\|Ga0207685_10452156	All Organisms → cellular organisms → Bacteria → Terrabacteria group	668	Open in IMG/M
3300025905\|Ga0207685_10773799	All Organisms → cellular organisms → Bacteria → Terrabacteria group	527	Open in IMG/M
3300025906\|Ga0207699_11156898	All Organisms → cellular organisms → Bacteria → Terrabacteria group	573	Open in IMG/M
3300025931\|Ga0207644_10635571	All Organisms → cellular organisms → Bacteria	888	Open in IMG/M
3300025935\|Ga0207709_11826349	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	506	Open in IMG/M
3300026118\|Ga0207675_100423855	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1315	Open in IMG/M
3300026118\|Ga0207675_100457003	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1266	Open in IMG/M
3300027718\|Ga0209795_10145652	All Organisms → cellular organisms → Bacteria → Terrabacteria group	669	Open in IMG/M
3300027775\|Ga0209177_10319344	All Organisms → cellular organisms → Bacteria	598	Open in IMG/M
3300028707\|Ga0307291_1008703	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2188	Open in IMG/M
3300028716\|Ga0307311_10208450	All Organisms → cellular organisms → Bacteria → Terrabacteria group	574	Open in IMG/M
3300028754\|Ga0307297_10377136	All Organisms → cellular organisms → Bacteria → Terrabacteria group	521	Open in IMG/M
3300028755\|Ga0307316_10302330	All Organisms → cellular organisms → Bacteria → Terrabacteria group	585	Open in IMG/M
3300028787\|Ga0307323_10004418	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	4566	Open in IMG/M
3300028807\|Ga0307305_10389383	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	630	Open in IMG/M
3300028878\|Ga0307278_10532163	All Organisms → cellular organisms → Bacteria → Terrabacteria group	513	Open in IMG/M
3300031720\|Ga0307469_12227464	Not Available	534	Open in IMG/M
3300031744\|Ga0306918_10193508	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1529	Open in IMG/M
3300031771\|Ga0318546_10499231	Not Available	854	Open in IMG/M
3300031879\|Ga0306919_11013607	Not Available	635	Open in IMG/M
3300031912\|Ga0306921_11955237	All Organisms → cellular organisms → Bacteria → Terrabacteria group	626	Open in IMG/M
3300031938\|Ga0308175_101755099	All Organisms → cellular organisms → Bacteria → Terrabacteria group	695	Open in IMG/M
3300031939\|Ga0308174_10479230	All Organisms → cellular organisms → Bacteria	1015	Open in IMG/M
3300032063\|Ga0318504_10211944	All Organisms → cellular organisms → Bacteria → Terrabacteria group	906	Open in IMG/M
3300032122\|Ga0310895_10582408	All Organisms → cellular organisms → Bacteria → Terrabacteria group	572	Open in IMG/M
3300032205\|Ga0307472_101093204	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	754	Open in IMG/M
3300032805\|Ga0335078_10109221	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3979	Open in IMG/M
3300032892\|Ga0335081_11642990	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	703	Open in IMG/M
3300032954\|Ga0335083_10907980	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	699	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	81.37%
Host-Associated	Host-Associated	18.63%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	79.41%
Plants	Host-Associated → Plants	18.63%
Aquatic	Environmental → Aquatic	1.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	79.41%
Rhizosphere	Host-Associated → Plants → Rhizosphere	11.76%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.88%
Freshwater	Environmental → Aquatic → Freshwater	1.96%
Phylloplane	Host-Associated → Plants → Phylloplane	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	67.65%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	10.78%
Loam	Environmental → Terrestrial → Soil → Loam	8.82%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.88%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.94%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.96%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.98%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	38.24%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	10.78%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	9.80%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	9.80%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	5.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.88%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.90%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.94%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.94%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.96%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.96%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.96%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.98%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.98%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	11.76%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	7.84%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	6.86%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	5.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.90%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.90%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	3.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.94%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.94%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.94%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.94%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.94%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.96%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.96%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.96%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	1.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.96%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.98%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.98%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.98%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.98%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	0.98%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908045	Soil microbial communities from Great Prairies - Kansas assembly 1 01_01_2011	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001384	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-3 shallow-072012	Environmental	Open in IMG/M
3300001686	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006573	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006575	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006605	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300010880	Boreal forest soil eukaryotic communities from Alaska, USA - C5-1 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012503	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.5.old.080610_R	Host-Associated	Open in IMG/M
3300012896	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S118-311C-2	Environmental	Open in IMG/M
3300012898	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S194-509B-1	Environmental	Open in IMG/M
3300012911	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S088-202R-2	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09182015	Environmental	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300018001	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_5	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300023062	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S081-202R-4	Environmental	Open in IMG/M
3300025321	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027718	Agave microbial communities from Guanajuato, Mexico - Or.Ma.rz (SPAdes)	Host-Associated	Open in IMG/M
3300027775	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)	Environmental	Open in IMG/M
3300028707	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_148	Environmental	Open in IMG/M
3300028716	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_198	Environmental	Open in IMG/M
3300028754	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_157	Environmental	Open in IMG/M
3300028755	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_356	Environmental	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031939	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032122	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D4	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M

Geographical Distribution

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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.39
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.39
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F102129

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
KansclcFeb2_05222990	2124908045	Soil	HSIAIRYLGERDGAAYADGGEDDTLIRLEPGRLRAWDFADQF
JGI10216J12902_1062755042	3300000956	Soil	IRIASRYLGPQAAAEYAESGGDDLIVRLEPGHLRAWDFADSVD*
JGI20190J14840_10111973	3300001384	Arctic Peat Soil	YLGREAGAAYADRAEDDLLIRLEPGDLRAWDFADELS*
C688J18823_104281161	3300001686	Soil	HAVRDIASRYLGDDEGGAYADRGSDDTLIRLEPGDLRAWDFADDL*
C688J35102_1203842593	3300002568	Soil	LAHADASAVRDIASRYLGDDEGSAYADRGSDDTLIRLEPRDLRAWDFADDL*
Ga0062590_1029084321	3300004157	Soil	RYLGREAGIAYVAEGSDDLLVRLEPGTLRAWDFADEFGVSA*
Ga0062591_1029967062	3300004643	Soil	RIAARYLGPEAGQRYAETAGDDLLIRLEPGELRGWDFADDFT*
Ga0066388_1007565403	3300005332	Tropical Forest Soil	KRIASRYLGVEAGSAYAERGGDDLLIRLELGDLRGWDFADDFS*
Ga0070714_1008424602	3300005435	Agricultural Soil	ADVLEIAVRYLGEEEGGAYAAGGEDDTLIRLEPGRLRAWDFVDDL*
Ga0066697_102368131	3300005540	Soil	AVERIAKRYLGSPGGETYAESAGDDLLIRLEPGTLRTWDFADEFEVPG*
Ga0070693_1005433472	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	IAARYLGQEAGERYAESAGDDLLIRLEPGQLRAWDFSDYFA*
Ga0066707_102918843	3300005556	Soil	GGETYAASAGDDLLIRLEPGTLRTWDFADEFEVSG*
Ga0066706_104821511	3300005598	Soil	YLGEEAGAAYAERMRDDVVVRLEPGGLRAWDFSDESA*
Ga0066903_1091174882	3300005764	Tropical Forest Soil	HYLGPEAGPAYAARSGDDLLVRLEPETLRAWDFADEYA*
Ga0081455_100613335	3300005937	Tabebuia Heterophylla Rhizosphere	LGAELGEQYAETDADDLLVRLEPGELRGWDFADDFA*
Ga0081455_104741181	3300005937	Tabebuia Heterophylla Rhizosphere	RIAARYLGPEFGEQYAETDADDLLIRLEPGELRGWDFADDFA*
Ga0066652_1018280642	3300006046	Soil	IAVRYLGERDGAAYADRAGDDTLIRLEPGRLRAWDFADDL*
Ga0074055_115998662	3300006573	Soil	DTVREIAARYLGDVEGGAYADRGYDDTLIRLEPGRLRAWDFADDL*
Ga0074053_117135421	3300006575	Soil	AARYLGDVEGGAYADRGYDDTLIRLEPGRLRAWDFADDL*
Ga0074057_121014193	3300006605	Soil	VIGRAGADTVREIAARYLGDVEGGAYADRGYDDTLIRLEPGRLRAWDFADDL*
Ga0066653_102937463	3300006791	Soil	GPEAGDRYAETAGDDLLIRLEPGELRGWDFADYFA*
Ga0079221_115320542	3300006804	Agricultural Soil	RIAVRYLGPEEGERYVAGGGDDLLIRLEPGKLRAWDFADDF*
Ga0075433_111371821	3300006852	Populus Rhizosphere	RRIATRYLGPEAGQRYGETAGDDLLIRLEPGELRGWDFADDFAG*
Ga0075425_1010425383	3300006854	Populus Rhizosphere	RRIAIRYLGPEAGERYAETAGDDLLIRLEPGKLRGWDFADDFA*
Ga0075424_1016266701	3300006904	Populus Rhizosphere	IVRRIASRYLGPEAGQRYGETAGDDLLIRLEPGELRGWDFADDFAG*
Ga0075424_1026501652	3300006904	Populus Rhizosphere	SIVRRIAARYLGPEAGQRYAETAGDDLLIRLEPGELRGWDFADDFT*
Ga0075436_1007675192	3300006914	Populus Rhizosphere	TEDRSIVRRIAARYLGPEFGEEYAGTDADDLLIRLEPGELRGWDFADDFA*
Ga0079219_120040861	3300006954	Agricultural Soil	PDEGQRYDETAGDDLLIRLEPGELRGWDFADHFAG*
Ga0105245_112497301	3300009098	Miscanthus Rhizosphere	QEAGERYAETGGDDLLIRLEPGELRAWDFADDFA*
Ga0066709_1001074591	3300009137	Grasslands Soil	STPADRSIIRRIATRYLGPEAGDRCAEGGGDDLLIRLEPGELRAWDFADDFG*
Ga0116218_11310861	3300009522	Peatlands Soil	GREAGAAYADSATDDLLIRLEPGELRAWDFADQLS*
Ga0105249_111118973	3300009553	Switchgrass Rhizosphere	RYLGVEEGEKYVSEGYDDTLIRLEPGRLRAWDFVDDM*
Ga0105249_112690371	3300009553	Switchgrass Rhizosphere	VVREIAGRYLGDEEGRAYADGGHDDTLIRLEPGRLRAWDFADDL*
Ga0126374_111049801	3300009792	Tropical Forest Soil	RYLGPEAGGQYADSAGDDLLIRLEPGELRAWDFADDIA*
Ga0126374_114294651	3300009792	Tropical Forest Soil	LGPEGGEQYAETAGDDLLIRLEPGELRAWDFADEFA*
Ga0126309_111938542	3300010039	Serpentine Soil	ADADDVYEIAGRYLGDEEGAAYADRGHDDTLIRLEPGRLRAWDFTDDL*
Ga0134086_100399731	3300010323	Grasslands Soil	PEAGEQYAETEGDDLLIRLEPGELRAWDFADDFV*
Ga0134080_105560731	3300010333	Grasslands Soil	SAGLSTLEDRSIVRRIATRYLGPEAGEQYAETTGGDDLLIRLEPGELRGWDFADDFA*
Ga0134062_104195102	3300010337	Grasslands Soil	RYLGGEEGEAYADRGDDDTLIRLEPGRLRAWDFADDL*
Ga0126370_123383912	3300010358	Tropical Forest Soil	YLGEDEGDAYTEMGEDDTLIRLEPGRLRAWDFADDL*
Ga0126376_112813992	3300010359	Tropical Forest Soil	YLGRETGGAYAGRAADDLLIRLEPGDLRAWDFADELA*
Ga0126378_103421571	3300010361	Tropical Forest Soil	GAEAGAAYAESAGDDLLIRLEPGNLRAWDFADEFS*
Ga0126379_120770802	3300010366	Tropical Forest Soil	AEAGSAYAERGGDDLLIQLEPGDLRGWDFADDFS*
Ga0105239_122018342	3300010375	Corn Rhizosphere	PVDGPAMVARIAGRYLGPQAGGRYAESGNDDLLIRIEPGELRGWDFTDDFD*
Ga0134122_115273832	3300010400	Terrestrial Soil	SRYLGAEGGATYVEEGGDDLVLRLEPGILRTWDFADDLS*
Ga0134121_105913501	3300010401	Terrestrial Soil	LSTPDDRSIVRRIATRYLGPEADEQYAESGGDDLLIRLEPGELRAWDFADDFT*
Ga0134121_112429962	3300010401	Terrestrial Soil	ARYLGQEGAAAYVESGGDDLLVRLEPGVLRTWDFADD*
Ga0126350_114004021	3300010880	Boreal Forest Soil	AVRYLGVEAGEAYVADFSDDVVIRLEPGTVRAWDFADEYT*
Ga0137393_100598351	3300011271	Vadose Zone Soil	VAVRYLGPELGPAYVEGGGDSLLIRLEPGDLRAWDFAEKLGEIERS*
Ga0137364_108161762	3300012198	Vadose Zone Soil	RKGGDRYTASAGDDLLIRLEPGELRAWDFADDFA*
Ga0137365_105883201	3300012201	Vadose Zone Soil	ATRYLGPEAGERYAETSGDDQLIRLEPGELRGWDFADDFS*
Ga0137374_111612281	3300012204	Vadose Zone Soil	RYLGERAGAAYAQTAGDDTVIRLEPGRLRAWDFSDEAPL*
Ga0137381_104221103	3300012207	Vadose Zone Soil	PGAGVAYAERVGDDLLIRLEPGDLRAWDFAGELT*
Ga0137386_111144301	3300012351	Vadose Zone Soil	IATRYLGEEAGAAYAERMRDDVVVRLEPGRFRAWDFSDEGV*
Ga0137369_101198911	3300012355	Vadose Zone Soil	RDGTAYAESAGDDTLIRLAPGRLRAWDFSDEYLA*
Ga0137368_107802301	3300012358	Vadose Zone Soil	IAVRYLGAEEGEAYVASAGDDTLIRLEPGHVRAWDFADDL*
Ga0157313_10148942	3300012503	Arabidopsis Rhizosphere	RYLGPEAGEQYAEGGGDDLLVRLEPGELRAWDFADDFA*
Ga0157303_100075361	3300012896	Soil	ARYLGPEFGEQYAETDADDLLIRLEPGELRGWDFADDFA*
Ga0157293_100117744	3300012898	Soil	VRYLGVEEGEKYVSEGYDDTLIRLEPGHLRAWDFVDDM*
Ga0157301_102055152	3300012911	Soil	RYLGPQAAAEYAESGGDDVIVRLEPGHLRAWDFADSVD*
Ga0164304_116828572	3300012986	Soil	ADADFVRDIAVRYLGDDQGQAYVDRGYDDTLIRLEPGHLRAWDFTDDF*
Ga0157375_128451012	3300013308	Miscanthus Rhizosphere	VVARVAGRYLGGEEGEQYAQTSGDDLLIRLEPGNLRAWDFADFYS*
Ga0134079_103849983	3300014166	Grasslands Soil	EEAGNAIRHIAVRYLGERDGVAYADSAGDDTLIRLEPGRLRAWDFADQL*
Ga0173480_106991812	3300015200	Soil	MSVPVLDIATRYLGAEKGRAYVDKGYDDTLIRLEPEYLRAWDFKDDPEL*
Ga0187816_104379142	3300017995	Freshwater Sediment	LRRGEVAYASRSMSLLLIRLEPGDLRAWDFADELS
Ga0187815_104870002	3300018001	Freshwater Sediment	YLGVEQGEAYAAGAGDDTLIRLEPGMLRAWDFADDY
Ga0066667_111568331	3300018433	Grasslands Soil	RRLATRCRGPEGGDQYAQGGGDDLLIRLEPDALRAWDFADEFA
Ga0066669_114046251	3300018482	Grasslands Soil	IAARYLGERDGAAYAASSGDDTLIRLEPGRLRAWDFADQL
Ga0210399_102718982	3300020581	Soil	SRYLGAEAGAAYAESAGDDLLIRVEPGELRAWDFADEFS
Ga0210388_107310141	3300021181	Soil	IASRYLGLEAGAAYADSADDDLLVRLEPGELRAWDFAGEHS
Ga0210402_104375743	3300021478	Soil	RYLGPRAGAAYADTARDDLLIRLEPGDLRAWDFADEYS
Ga0247791_10933192	3300023062	Soil	GAEVAAAYVRSLTGNDLLVRVEPGELRVWDFADDFPSG
Ga0207656_102937762	3300025321	Corn Rhizosphere	ERSIVGRIAARYLGSEAGEQYAETAGDDVLIRLEPGTLRGWDFADYFAC
Ga0207685_104521562	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	IRYLGETEGAAQAERLADDVVLRLEPGDLRAWDFTDEY
Ga0207685_107737991	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	DGSVVSRIAGRYLGREAGERYAETAGDDLLIRLEPGDLRAWDFSDYFT
Ga0207699_111568981	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	VSRIAARYLGQEAGERYAESAGDDLLIRLEPGQLRAWDFSDYFA
Ga0207644_106355711	3300025931	Switchgrass Rhizosphere	RYLGQEAGERYAETAGDDLLIRLEPGQLRAWDFADDFA
Ga0207709_118263492	3300025935	Miscanthus Rhizosphere	ARYLGPEFGEQYAETDADDLLIRLEPGELRGWDFADDFA
Ga0207675_1004238551	3300026118	Switchgrass Rhizosphere	LGDEEGRAYADGGHDDTLIRLEPGRLRAWDFADDL
Ga0207675_1004570031	3300026118	Switchgrass Rhizosphere	RYLGPDEGQRYDETAGDDLLIRLEPGELRGWDFADHFAG
Ga0209795_101456522	3300027718	Agave	VPEDRSIVRRIATRYLGPEAGEQYAEGAGDDLLIRLEPGELRGWDFADDFA
Ga0209177_103193442	3300027775	Agricultural Soil	ITLEERSIVGRIAARYLGSEAGEQYAETAGDDVLIRLEPGTLRGWDFADYFAC
Ga0307291_10087033	3300028707	Soil	RDIAGRYLGDEEGGAYADRGYDDTLIRLEPGRLRAWDFADDL
Ga0307311_102084501	3300028716	Soil	ADVVRDIAGRYLGDEEGGAYADRGYDDTLIRLEPGRLRAWDFADDL
Ga0307297_103771362	3300028754	Soil	RDIAVRYLGDEEGGAYADRGYDDTLIRLEPGRLRAWDFADDL
Ga0307316_103023301	3300028755	Soil	SRYLGAEAGAAYAEQTTDDTIIRLEPGRLRAWDFSDEAT
Ga0307323_100044187	3300028787	Soil	RYLGDEEGGAYADRGYDDTLIRLEPGRLRAWDFADDL
Ga0307305_103893832	3300028807	Soil	RYLGREKGTAYAAEEADDVLIRLEPGRLRAWDFADEYPTTET
Ga0307278_105321632	3300028878	Soil	ATRYLGPDEGERYGEVGVDDLLIRLEPGELRAWDFADYFA
Ga0307469_122274641	3300031720	Hardwood Forest Soil	LGPEEGERYVESGNDDLLIRLEPGELRAWDFVDSFA
Ga0306918_101935081	3300031744	Soil	VGDAVLRIASHYLGPEAGAAYADSAGDDLLIRLEPGRLRAWDFADELA
Ga0318546_104992311	3300031771	Soil	IASRYLGPEAGAAYAERGNDDLLIRLEPGDLRAWDFADDL
Ga0306919_110136072	3300031879	Soil	SRYLGPEAGAAYAERGYDDLLIRLEPGDLRAWDFADDL
Ga0306921_119552371	3300031912	Soil	VTRIASRYLGPEAGAAYAERGNDDLLIRLEPGDLRAWDFADDL
Ga0308175_1017550992	3300031938	Soil	TTARLSTLEDRSVVARIAARYLGREAGDRYAETAGDDLLIRLEPGDVRAWDFSDTYA
Ga0308174_104792302	3300031939	Soil	RIAARYLGREAGDRYAETAGDDLLIRLEPGDVRAWDFSDSYA
Ga0318504_102119442	3300032063	Soil	YLGPEAGAAYADSAGDDLLIRLEPGRLRAWDFADELA
Ga0310895_105824081	3300032122	Soil	IAGRYLGDEEGRAYADGGHDDTLIRLEPGRLRAWDFADDL
Ga0307472_1010932043	3300032205	Hardwood Forest Soil	RAIAIRYLGEEAGTAYAEQIADETLIRLEAGRVRAWDFADEYS
Ga0335078_101092211	3300032805	Soil	ITSRYLGRQAGAAYAGSAADDLLIRLEPGDLRAWDFAGEPS
Ga0335081_116429901	3300032892	Soil	GGADAIVAIASRYLGPEEGRAYADSASDDTLIRLEPGTIRAWDFSDE
Ga0335083_109079802	3300032954	Soil	YLGRQAGAAYADSGLDDLLIRLEPGELRAWDFADQLS

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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