Metagenome Family F102042

Overview

Basic Information

• Family ID: F102042
• Family Type: Metagenome
• Number of Sequences: 102
• Average Sequence Length: 45 residues
• Representative Sequence: VVEDLISFGIEDHTFGPTKVREHFPEEELTLGKNRLLEVASLVE
• Number of Associated Samples: 5
• Number of Associated Scaffolds: 102

Quality Assessment

• Transcriptomic Evidence: No
• Most common taxonomic group: Unclassified
• % of genes with valid RBS motifs: 100.00 %
• % of genes near scaffold ends (potentially truncated): 0.00 %
• % of genes from short scaffolds (< 2000 bps): 0.98 %
• Associated GOLD sequencing projects: 4
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.26

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Unclassified (100.000 % of family members)
• NCBI Taxonomy ID: N/A
• Taxonomy: N/A

Most Common Ecosystem

• GOLD Ecosystem: Host-Associated → Tunicates → Ascidians → Unclassified → Unclassified → Ecteinascidia Turbinata (100.000 % of family members)
• Environment Ontology (ENVO): Unclassified (100.000 % of family members)
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal corpus (100.000 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 43.06%
  β-sheet: 0.00%
  Coil/Unstructured: 56.94%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF00078	RVT_1	10.78
PF03137	OATP	3.92
PF00145	DNA_methylase	0.98
PF13640	2OG-FeII_Oxy_3	0.98
PF00520	Ion_trans	0.98
PF01227	GTP_cyclohydroI	0.98
PF13358	DDE_3	0.98
PF13419	HAD_2	0.98

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG0270	DNA-cytosine methylase	Replication, recombination and repair [L]	0.98

Phylogeny

NCBI Taxonomy

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	100.00 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300001689|JGI24159J19872_10140537	Not Available	1252
3300027611|Ga0210059_1018783	Not Available	9694

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	100.00%

Class

Habitat	Taxonomy	Distribution
Tunicates	Host-Associated → Tunicates	100.00%

Category

Habitat	Taxonomy	Distribution
Ascidians	Host-Associated → Tunicates → Ascidians	100.00%

Type

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Tunicates → Ascidians → Unclassified	100.00%

Subtype

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Tunicates → Ascidians → Unclassified → Unclassified	100.00%

Habitat

Habitat	Taxonomy	Distribution
Ecteinascidia Turbinata	Host-Associated → Tunicates → Ascidians → Unclassified → Unclassified → Ecteinascidia Turbinata	100.00%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300001463	Ecteinascidia turbinata endosymbiont from Florida, USA - Sample 1	Host-Associated
3300001539	Ecteinascidia turbinata endosymbiont from Florida, USA - Sample 2	Host-Associated
3300001689	Ecteinascidia turbinata endosymbiont from Florida, USA - Sample 4	Host-Associated
3300001913	Ecteinascidia turbinata endosymbiont from Florida, USA - Sample 3	Host-Associated
3300027611	Ecteinascidia turbinata endosymbiont from Florida, USA - Sample 2 (SPAdes)	Host-Associated

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI24021J15306_1000077720	3300001463	Ecteinascidia Turbinata	LKVNVVEDLVLFGIEDHTLGPTKVREHFPEEEVTLGKNRLLEVSSLVE*
JGI24021J15306_1000909815	3300001463	Ecteinascidia Turbinata	VKVVENLISFGIEDDTFGPTNVGEHFPEEELTLVKNRLLEVASLVD*
JGI24021J15306_1002483112	3300001463	Ecteinascidia Turbinata	HLKVKVVENLISSGIEDHTFGPMNLREHFPEEKLTLGKNRFLEVASLVE*
JGI24021J15306_100250063	3300001463	Ecteinascidia Turbinata	VVEDLISFGIDDNTFGPTKVREHFPEEELTLGKNRLLEVASLVE*
JGI24021J15306_100338236	3300001463	Ecteinascidia Turbinata	MVEDLISFGIKTTLLGTKVREHFPEEELTLGQNRLLDVASLVE*
JGI24021J15306_100340205	3300001463	Ecteinascidia Turbinata	MVEDFISFGIEDHTFGPTKVREHFPEEESTLGENMLLKVASLVE*
JGI24021J15306_100424362	3300001463	Ecteinascidia Turbinata	VVENLISSGIEHYTFGPINLREHFPEEELTLGKNRFLEAASLVE*
JGI24021J15306_100496491	3300001463	Ecteinascidia Turbinata	VVEDLISFGIEDHTFGPTKVREHFPMEELTPSKNRLLEVASLVE*
JGI24021J15306_100535783	3300001463	Ecteinascidia Turbinata	VVEFLISFGIEYHTFRPTKVREYFPEEKLTLGKNRLLGVASLVE*
JGI24021J15306_100620729	3300001463	Ecteinascidia Turbinata	VVEDLISFGIEDHTLGTIKVREPFLEEELTLGKNRLLEVASLVE*
JGI24021J15306_100811614	3300001463	Ecteinascidia Turbinata	VVEDLISFGIEDHTFGPTKVREHFAEEELTLGKNRLAEVASLVE*
JGI24021J15306_100873323	3300001463	Ecteinascidia Turbinata	VVENLISFGIEDHTFGPTKVREHFPEEKLTLGKKRLLEVASLVE*
JGI24021J15306_101036954	3300001463	Ecteinascidia Turbinata	MVEDVISFGIEDHTLGPIKVREHFPEKELTLGKNGSLEVASLME*
JGI24021J15306_101060061	3300001463	Ecteinascidia Turbinata	VVENLILYGIEDHTFGPMNLREHFPEEKLTLGKNRFLE
JGI24021J15306_101273632	3300001463	Ecteinascidia Turbinata	VVEDLISFGIEHHTLRPVKVREHFPEEELTLGKNRLLEVAILVE*
JGI24021J15306_101394732	3300001463	Ecteinascidia Turbinata	LKVNVVEDLSFRIEDHTFGPTKVWKHFPEEEVTLGKNRLLRVASLVE*
JGI24021J15306_101448851	3300001463	Ecteinascidia Turbinata	VVENLISFGIEDHTFGPINLSEQFPEEELTLGKNRFLEVASLVE*
JGI24021J15306_101747662	3300001463	Ecteinascidia Turbinata	VKVVEDLISFGIEDHTFGPTKVREHFPVEELTLGKNRLLEVSSLVE*
JGI24021J15306_101855442	3300001463	Ecteinascidia Turbinata	VVKYLISSGIENYTFGPVKLREHFPEEELILGKNRFLEVASLVE*
JGI24021J15306_102362571	3300001463	Ecteinascidia Turbinata	VVESLISSRIEDHTFGPINFPEEELSLGKNRFLEVASLVE*
JGI24022J15233_1000239012	3300001539	Ecteinascidia Turbinata	LKVNVVEDLVLFGIEDHTLGPTKVREHFPEEELTLGKNRLLEVSSLVE*
JGI24022J15233_1001314611	3300001539	Ecteinascidia Turbinata	MWLKTFNSFGIEDHTFGATKVSEHFAEEELPLGKIRLLEVASLVE*
JGI24022J15233_100235371	3300001539	Ecteinascidia Turbinata	HXKVKVVENLISSGIEDHTFGPMNLREHFPEEKLTLGKNRFLEVASLVE*
JGI24022J15233_1003779810	3300001539	Ecteinascidia Turbinata	MVEDFILFGIEDHTFGPTKVREHFPEEESTLGENMLLKVASLVE*
JGI24022J15233_100434707	3300001539	Ecteinascidia Turbinata	VVQDLISFGIEDHTFGPTNVGEHFPEEELTLGKNRLLEVASLVE*
JGI24022J15233_100585033	3300001539	Ecteinascidia Turbinata	LFEALISFGIEDHTLGPTKVREHFPDEELTLGKNRLSEVASLVE*
JGI24022J15233_100630514	3300001539	Ecteinascidia Turbinata	VVEDLISFGIEDHTFGPTKAREHFPEEELTLGKNRLFEVASLKLS*
JGI24022J15233_100633045	3300001539	Ecteinascidia Turbinata	VVEDLTSFGIEDHTLGPIKVREHFPEEELTLGKNRLLERKTHSR*
JGI24022J15233_100830053	3300001539	Ecteinascidia Turbinata	VVEDLISFGIEDHTFGPTKITENVPEEELTLGKNRLLEVASLVE*
JGI24022J15233_100836651	3300001539	Ecteinascidia Turbinata	EYLISFGIEDHTFGPTKVREHFPEEELTLGKNRLLEVASLVE*
JGI24022J15233_100889846	3300001539	Ecteinascidia Turbinata	VVEDLSFRIEDHTFGPTMVWKHFPEEEVTLGNNRLLRVASLVE*
JGI24022J15233_101004951	3300001539	Ecteinascidia Turbinata	VVEDLISFGIEDHTIGPTKVREHFPEEELTLGKNRLLEVA
JGI24022J15233_101018323	3300001539	Ecteinascidia Turbinata	VVEDLISFGIEDHTLGPTKVRKNFPEEELTLGKNRLLEVASLVE*
JGI24022J15233_101049732	3300001539	Ecteinascidia Turbinata	VADYLISFGIEDHTFGPTKVREHFPEEELTLGKNKLLKVASLVE*
JGI24022J15233_101084004	3300001539	Ecteinascidia Turbinata	MSSRIEDHTFGPINLREHFPEEELTQDKNRLFEVASLVE*
JGI24022J15233_101631541	3300001539	Ecteinascidia Turbinata	VVEDLISHDIEDHTFGLTKVREHFPEEELTLGKNRLLEVASLVE*
JGI24022J15233_101639472	3300001539	Ecteinascidia Turbinata	VVEDLISFGIEDHTLGPTKTREHFPEEELILGKKRLLEVASLVE*
JGI24022J15233_101731742	3300001539	Ecteinascidia Turbinata	VKVVEALISFGIEDHTFGPTKVREHFPVEELTLGKNRLLEVSSLVE*
JGI24022J15233_102117522	3300001539	Ecteinascidia Turbinata	VVENLISSGIEGHTFGPINLRVHFPEEKLTLGKNMFLEVASLVE*
JGI24022J15233_102245742	3300001539	Ecteinascidia Turbinata	VVENLISSGIEHHTFGPMNLREHFPEEELTLGKNRLLEVASLVE*
JGI24022J15233_102432521	3300001539	Ecteinascidia Turbinata	VFLKFHLKVKVVANLISFGIEDHTFGPINLREHFPEEELTLGKNRFLEVSSLVE*
JGI24022J15233_102476301	3300001539	Ecteinascidia Turbinata	FGIEYHTLGPTKVREHFPEEELILGKNRLLEVANLVE*
JGI24159J19872_1000152018	3300001689	Ecteinascidia Turbinata	LKVKVAARDFIPSGIEKYTFWPTNVREYFPEEEVTLSKNRLLEVVSLVE*
JGI24159J19872_1000427814	3300001689	Ecteinascidia Turbinata	VVEDLISSSFEDHTFGLTNVREHYPEEELTLGENRLLDLWSGNELS*
JGI24159J19872_100242842	3300001689	Ecteinascidia Turbinata	VVDDLLSFGIEDHTLEPTNVREHFPEEELTLGKNGLLKVASLVE*
JGI24159J19872_100360285	3300001689	Ecteinascidia Turbinata	VKVVENLISFGIEDDTFGPTNVGEHFPEEELTLGKNRLLEVASLVD*
JGI24159J19872_1003927910	3300001689	Ecteinascidia Turbinata	MSLGIEDHTFGPTKVREHFPEEEVTLVRNRNRLVEVASLVERMN*
JGI24159J19872_100450917	3300001689	Ecteinascidia Turbinata	MSSRIEDHTFGPINLREHFPEEELTQDKNRLLEVPSLVE**
JGI24159J19872_100543391	3300001689	Ecteinascidia Turbinata	SGIEDHTFGPINLREHFPDEELTLGKNRFLEVASLVE*
JGI24159J19872_100599591	3300001689	Ecteinascidia Turbinata	LISFGIEYHTLGPTKVREHFPEEELILGKNRLLXVAXLVE*
JGI24159J19872_100623315	3300001689	Ecteinascidia Turbinata	VVANLISFGIEDHTFGPINLREHFPEEELTLGKNRFLEVSSLVE*
JGI24159J19872_100948801	3300001689	Ecteinascidia Turbinata	VFLQSPLKVNVADYLISFGIEDHTFGPTKVREHFPEEELTLGKNKLLKVASLVE*
JGI24159J19872_100961211	3300001689	Ecteinascidia Turbinata	VVENLILYGIEDHTFGPMNLREHFPEEKLTLGKNRFLEVASPVE*
JGI24159J19872_101075923	3300001689	Ecteinascidia Turbinata	VVEYLISFGIEDHTFGPINLREHFAEVELTLGKNRFLEVASLVES*
JGI24159J19872_101405371	3300001689	Ecteinascidia Turbinata	VVEDLISFGIEDHTFGPTKVREHFPEEELTLGKNRLLEVASLVE*
JGI24159J19872_101971482	3300001689	Ecteinascidia Turbinata	VVEKLISSCIEDHTFGPMNLREHFPDEELNLCKNRFLEVASFVE*
JGI24158J21664_100147451	3300001913	Ecteinascidia Turbinata	LKVNVVEDLILFGIEDHTLGPTKVREHFPEEELTLGKNRLLEVASLVE*
JGI24158J21664_100375741	3300001913	Ecteinascidia Turbinata	EDLISFGIEDHTYGPTKVREHLPAAELTLGANSLLEVTSLVELE*
JGI24158J21664_100496124	3300001913	Ecteinascidia Turbinata	VVEDVISFGIEDHTFEPTKVREHFPREELTLGKNRLLEVASLVD*
JGI24158J21664_100591511	3300001913	Ecteinascidia Turbinata	FFSFHLKVNVVEDLISFGIEDHTLGTIKVREPFPEEELTLGKNRLLEVASLVE*
JGI24158J21664_100784433	3300001913	Ecteinascidia Turbinata	VFFSFHLKVNVVEDLISFGIEHHTLRPIKVREHFPEEELTLGKNRLLEVAILVE*
JGI24158J21664_101402434	3300001913	Ecteinascidia Turbinata	VVEDLISFGIEDHTFGPTKVREHFPEEELTLGKNRLLEVASLVE*EE
JGI24158J21664_101461654	3300001913	Ecteinascidia Turbinata	VNVVENLISFGIEDHTFGPTKVREHFPEEKLTXGKXRLLEVASLVX*
JGI24158J21664_102015992	3300001913	Ecteinascidia Turbinata	VVEDLISFGIEDHTLGPTKVREHFPEEEFNSGKNRLLEVASLVE*
JGI24158J21664_102195143	3300001913	Ecteinascidia Turbinata	VVEDLSFRIEDHTFGPTKVWKHFPEEEVTLGKNRLLRVASLVE*
JGI24158J21664_102288692	3300001913	Ecteinascidia Turbinata	LISFGIEYHTLGPTKVREHFPEEELILGKNRLLEVANLVE*
Ga0210059_100026730	3300027611	Ecteinascidia Turbinata	VFLQSPLKVNVADYLISFGIEDHTFGPTKVREHFPEEELTLGKNKLLKVASLVE
Ga0210059_10011853	3300027611	Ecteinascidia Turbinata	VVENLISSGIEDDTFGPMNLIEHFPEEELTLGKNRFLEVASLVE
Ga0210059_100118919	3300027611	Ecteinascidia Turbinata	LKANVVEDLISHDIEDHTFGLTKVREHFPEEELTLGKNRLLEVASLVE
Ga0210059_100170822	3300027611	Ecteinascidia Turbinata	VVEDLISFGIEHHTLRPIKVREHFPEEELTLGKNRLLEAASLVE
Ga0210059_100184911	3300027611	Ecteinascidia Turbinata	LKVNVVEDLVLFGIEDHTLGPTKVREHFPEEELTLGKNRLLEVSSLVE
Ga0210059_10022844	3300027611	Ecteinascidia Turbinata	VVEDLISFGIEDHTFGPTKITENVPEEELTLGKNRLLEVASLVE
Ga0210059_100353922	3300027611	Ecteinascidia Turbinata	VVEDLISFGIEDHTFGPTKVREHFAEEELTLGKNRLAEVASLVE
Ga0210059_100405910	3300027611	Ecteinascidia Turbinata	VVENLISSGIEDHTFGPINLRKHFPEEELTLGKNRFLEVASLVE
Ga0210059_10063035	3300027611	Ecteinascidia Turbinata	VVEDLISFGIEDHTLGTIKVREPFLEEELTLGKNRLLEVASLVE
Ga0210059_10064311	3300027611	Ecteinascidia Turbinata	VVQDLISFGIEDHTFGPTNVGEHFPEEELTLGKNRLLEVASLVE
Ga0210059_100826710	3300027611	Ecteinascidia Turbinata	VKVVEALISFGIEDHTFGPTKVREHFPVEELTLGKNRLLEVSSLVE
Ga0210059_10104092	3300027611	Ecteinascidia Turbinata	VVENLISSRIEDHTFGPMNLREHFPEEELTLGKNRFLEVASLVE
Ga0210059_101636112	3300027611	Ecteinascidia Turbinata	VVEDLISFGIEDHTFGPTKAREHFPEEELTLGKNRLFEVASLKLS
Ga0210059_10179825	3300027611	Ecteinascidia Turbinata	MVEDVISFGIEDHTLGPIKVREHFPEKELTLGKNGSLEVASLME
Ga0210059_10185761	3300027611	Ecteinascidia Turbinata	VVENLISSGIEDHTFGPMNLREHFPEEKLTLGKNRFLEVASLVE
Ga0210059_101878310	3300027611	Ecteinascidia Turbinata	VVADLISFGIEDHTLGPIKVREYFPEEELTLGKNRLLEVASLVE
Ga0210059_10195252	3300027611	Ecteinascidia Turbinata	VVEDLISFGIEDHTFGPTKVREHFPEEELTLGKNRLLDVASLVE
Ga0210059_10318023	3300027611	Ecteinascidia Turbinata	LFEALISFGIEDHTLGPTKVREHFPDEELTLGKNRLSEVASLVE
Ga0210059_10340535	3300027611	Ecteinascidia Turbinata	VVENLISFGIEDHTFGPMNLREHFPEEELTLGKNRFLEVASLVE
Ga0210059_10358812	3300027611	Ecteinascidia Turbinata	VVENLISSGIEDHTFGPINLVPEEELTLGKNRFLEVASLVE
Ga0210059_10395623	3300027611	Ecteinascidia Turbinata	VVENLISFGVEDHTFGPMNLREHFPEEELTLGKNRFLEVASLVE
Ga0210059_10443023	3300027611	Ecteinascidia Turbinata	VVENLISSGIEHYTFGPINLREHFPEEELTLGKNRFLEAASLVE
Ga0210059_10456361	3300027611	Ecteinascidia Turbinata	VVEDLISFGIEDHTLGPTKVRKNFPEEELTLGKNRLLEVASLVE
Ga0210059_10540383	3300027611	Ecteinascidia Turbinata	VVENLISFGIEDHTFGPTKVREHFPEEKLTLGKKRLLEVASLVE
Ga0210059_10626344	3300027611	Ecteinascidia Turbinata	VVDSLISSGMEDHTFGPINLREHFPEEELTLGKNRLLEVASLVE
Ga0210059_10630541	3300027611	Ecteinascidia Turbinata	VVENLILYGIEDHTFGPMNLREHFPEEKLTLGKNRFLEVASPVE
Ga0210059_10657904	3300027611	Ecteinascidia Turbinata	ISFGIEYHTLGPTKVREHFPEEELILGKNRLLEVANLVE
Ga0210059_10754881	3300027611	Ecteinascidia Turbinata	VVENLISSGIEDHTFGPLNLREHFPEEKLTLGKKRFLEVASLVE
Ga0210059_10802962	3300027611	Ecteinascidia Turbinata	VVEDLISFGIEDHTLGPTKTREHFPEEELILGKKRLLEVASLVE
Ga0210059_10847012	3300027611	Ecteinascidia Turbinata	VVENLISSGIEDHTFGPMNLREPFPEEELTLGKNRFLEVASLVE
Ga0210059_10888581	3300027611	Ecteinascidia Turbinata	VVENLISSGIEHHTFGPMNLREHFPEEELTLGKNRLLEVASLVE
Ga0210059_10920424	3300027611	Ecteinascidia Turbinata	VVEDLISFGIEDHTFGPTKVREHFPEEELTLGKNRLLEVASLVE
Ga0210059_11234751	3300027611	Ecteinascidia Turbinata	VVECLISSGIEDHTFGPINLREHFPEEELTLGKNRFLKVASLVE
Ga0210059_11457461	3300027611	Ecteinascidia Turbinata	VVENLISFGIEDHTFGPINLREHFPEEELTLGKNRFLEVASLVE
Ga0210059_11779902	3300027611	Ecteinascidia Turbinata	VVENLISSGIEDHTFGPMNLREHFPDEELTLGKNRFLEVASLVE
Ga0210059_11915801	3300027611	Ecteinascidia Turbinata	VVEDLISFGIEYHTLGPTKVREHFPEEELILGKNRLLEVASLVECDFFH