Metagenome / Metatranscriptome Family F102000

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F102000
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	46 residues
Representative Sequence	MAQSPNGIPSTNNQFNSVTRQAKYEPFDLQVARGQIYGHSVL
Number of Associated Samples	76
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	100.00 %
% of genes near scaffold ends (potentially truncated)	56.86 %
% of genes from short scaffolds (< 2000 bps)	53.92 %
Associated GOLD sequencing projects	64
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.14

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (63.725 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater (54.902 % of family members)
Environment Ontology (ENVO)	Unclassified (95.098 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (78.431 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 5.71% Coil/Unstructured: 94.29%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.14
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.14
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF10124	Mu-like_gpT	13.73
PF03237	Terminase_6N	1.96
PF13414	TPR_11	0.98
PF13432	TPR_16	0.98
PF00583	Acetyltransf_1	0.98
PF13431	TPR_17	0.98
PF00515	TPR_1	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.73 %
All Organisms	root	All Organisms	36.27 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.73 %
Viruses	superkingdom	All Organisms → Viruses	35.29 %
cellular organisms	root	All Organisms → cellular organisms	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.73 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	34.31 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.73 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	34.31 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.73 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	34.31 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.73 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	34.31 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.73 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	34.31 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.73 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	34.31 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000176\|TB03JUN2009E_c030251	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	754	Open in IMG/M
3300000439\|TBL_comb48_EPIDRAFT_1069551	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1123	Open in IMG/M
3300002301\|JGI24891J29808_1003773	Not Available	1819	Open in IMG/M
3300003375\|JGI26470J50227_1023400	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1319	Open in IMG/M
3300003375\|JGI26470J50227_1024626	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1269	Open in IMG/M
3300003783\|Ga0007850_1003931	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1362	Open in IMG/M
3300003783\|Ga0007850_1005302	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1133	Open in IMG/M
3300003787\|Ga0007811_1005587	All Organisms → cellular organisms → Bacteria	1373	Open in IMG/M
3300003809\|Ga0007869_1005409	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1454	Open in IMG/M
3300003820\|Ga0007863_1012737	Not Available	767	Open in IMG/M
3300003820\|Ga0007863_1021387	Not Available	548	Open in IMG/M
3300003852\|Ga0031655_10109180	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1107	Open in IMG/M
3300004095\|Ga0007829_10097713	Not Available	594	Open in IMG/M
3300004691\|Ga0065176_1008293	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	945	Open in IMG/M
3300004770\|Ga0007804_1064965	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	946	Open in IMG/M
3300004807\|Ga0007809_10108808	Not Available	839	Open in IMG/M
3300006100\|Ga0007806_1035550	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	986	Open in IMG/M
3300006100\|Ga0007806_1096284	Not Available	545	Open in IMG/M
3300006103\|Ga0007813_1073054	Not Available	680	Open in IMG/M
3300006121\|Ga0007824_1043722	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	864	Open in IMG/M
3300012686\|Ga0157560_1078131	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	966	Open in IMG/M
3300012703\|Ga0157572_1148793	Not Available	585	Open in IMG/M
3300013094\|Ga0164297_10110144	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1150	Open in IMG/M
3300016688\|Ga0180039_1121621	Not Available	831	Open in IMG/M
3300020727\|Ga0214246_1036814	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	762	Open in IMG/M
3300020733\|Ga0214172_1054960	Not Available	552	Open in IMG/M
3300021115\|Ga0214174_112546	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	696	Open in IMG/M
3300021132\|Ga0214196_1028222	Not Available	780	Open in IMG/M
3300021133\|Ga0214175_1017829	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	940	Open in IMG/M
3300021139\|Ga0214166_1056027	Not Available	845	Open in IMG/M
3300022602\|Ga0248169_118825	All Organisms → Viruses	4360	Open in IMG/M
3300025162\|Ga0209083_1018064	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	3646	Open in IMG/M
3300025316\|Ga0209697_10381939	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	690	Open in IMG/M
3300025339\|Ga0208502_1003569	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1365	Open in IMG/M
3300025353\|Ga0208255_122434	Not Available	557	Open in IMG/M
3300025357\|Ga0208383_1019293	Not Available	817	Open in IMG/M
3300025379\|Ga0208738_1000096	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	27039	Open in IMG/M
3300025387\|Ga0207959_1012761	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1467	Open in IMG/M
3300025389\|Ga0208257_1050134	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	587	Open in IMG/M
3300025391\|Ga0208740_1026612	Not Available	855	Open in IMG/M
3300025391\|Ga0208740_1047369	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	597	Open in IMG/M
3300025411\|Ga0208865_1028497	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	958	Open in IMG/M
3300025417\|Ga0208616_1041348	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	677	Open in IMG/M
3300025418\|Ga0208253_1029094	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1044	Open in IMG/M
3300025470\|Ga0208389_1036185	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	984	Open in IMG/M
3300025598\|Ga0208379_1040389	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1245	Open in IMG/M
3300025782\|Ga0208867_1037259	Not Available	699	Open in IMG/M
3300025789\|Ga0208499_1074361	Not Available	502	Open in IMG/M
3300025789\|Ga0208499_1074858	Not Available	500	Open in IMG/M
3300027896\|Ga0209777_10245017	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1413	Open in IMG/M
3300031759\|Ga0316219_1130734	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	941	Open in IMG/M
3300031813\|Ga0316217_10414584	Not Available	500	Open in IMG/M
3300032117\|Ga0316218_1129065	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	962	Open in IMG/M
3300032117\|Ga0316218_1207258	Not Available	699	Open in IMG/M
3300032561\|Ga0316222_1304006	Not Available	522	Open in IMG/M
3300032562\|Ga0316226_1174696	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	917	Open in IMG/M
3300032579\|Ga0316228_1157719	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	766	Open in IMG/M
3300032675\|Ga0316225_1102759	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	964	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	99.02%
Marine	Environmental → Aquatic → Marine	0.98%

Habitat	Taxonomy	Distribution
Lentic	Environmental → Aquatic → Freshwater → Lentic	91.18%
Lake	Environmental → Aquatic → Freshwater → Lake	7.84%
Coastal	Environmental → Aquatic → Marine → Coastal	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	55.88%
Hypolimnion	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion	18.63%
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	13.73%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	7.84%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	2.94%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	54.90%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater	18.63%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	13.73%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	5.88%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	2.94%
Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic	0.98%
Freshwater Lake Hypolimnion	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake Hypolimnion	0.98%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	0.98%
Marine	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000176	Freshwater microbial communities from Trout Bog Lake, WI - Practice 03JUN2009 epilimnion	Environmental	Open in IMG/M
3300000203	Freshwater microbial communities from Trout Bog Lake, WI - Practice 18AUG2009 epilimnion	Environmental	Open in IMG/M
3300000439	Trout Bog Lake June 7 2007 Epilimnion (Trout Bog Lake Combined Assembly 48 Epilimnion Samples, Aug 2012 Assem)	Environmental	Open in IMG/M
3300002301	Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI co-culture FSW-F8	Environmental	Open in IMG/M
3300003375	Freshwater actinobacteria microbial communities from Trout Bog Lake, Wisconsin, USA - enrichment TB-E6	Environmental	Open in IMG/M
3300003783	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH05Oct08	Environmental	Open in IMG/M
3300003787	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE21Jul09	Environmental	Open in IMG/M
3300003796	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH27Jul09	Environmental	Open in IMG/M
3300003809	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH03Jun09	Environmental	Open in IMG/M
3300003815	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH27Jun07	Environmental	Open in IMG/M
3300003820	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH10Sep07	Environmental	Open in IMG/M
3300003852	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies -HBP12 HB	Environmental	Open in IMG/M
3300004095	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE03Jun09	Environmental	Open in IMG/M
3300004460	Marine viral communities from Newfoundland, Canada BC-1	Environmental	Open in IMG/M
3300004684	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE23Jun09 (version 2)	Environmental	Open in IMG/M
3300004691	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE18Jul07 (version 2)	Environmental	Open in IMG/M
3300004692	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE27Jun07 (version 2)	Environmental	Open in IMG/M
3300004770	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE25Aug07	Environmental	Open in IMG/M
3300004807	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE02Aug07	Environmental	Open in IMG/M
3300006071	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH24Aug09	Environmental	Open in IMG/M
3300006100	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE18Aug09	Environmental	Open in IMG/M
3300006103	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE29Jun09	Environmental	Open in IMG/M
3300006108	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH20Aug07	Environmental	Open in IMG/M
3300006116	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE12Aug09	Environmental	Open in IMG/M
3300006119	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH18Jul07	Environmental	Open in IMG/M
3300006121	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE05Oct08	Environmental	Open in IMG/M
3300006127	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE24Aug09	Environmental	Open in IMG/M
3300012686	Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES055 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012703	Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA- GEODES074 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300013093	Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES057 metaG	Environmental	Open in IMG/M
3300013094	Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES058 metaG	Environmental	Open in IMG/M
3300016688	Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES053 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020727	Freshwater microbial communities from Trout Bog Lake, WI - 29MAY2009 hypolimnion	Environmental	Open in IMG/M
3300020731	Freshwater microbial communities from Trout Bog Lake, WI - 27JUN2007 epilimnion	Environmental	Open in IMG/M
3300020733	Freshwater microbial communities from Trout Bog Lake, WI - 12JUL2007 epilimnion	Environmental	Open in IMG/M
3300021115	Freshwater microbial communities from Trout Bog Lake, WI - 31JUL2007 epilimnion	Environmental	Open in IMG/M
3300021132	Freshwater microbial communities from Trout Bog Lake, WI - 25AUG2008 epilimnion	Environmental	Open in IMG/M
3300021133	Freshwater microbial communities from Trout Bog Lake, WI - 09AUG2007 epilimnion	Environmental	Open in IMG/M
3300021139	Freshwater microbial communities from Trout Bog Lake, WI - Practice 18AUG2009 epilimnion	Environmental	Open in IMG/M
3300021142	Freshwater microbial communities from Trout Bog Lake, WI - 29JUL2008 epilimnion	Environmental	Open in IMG/M
3300022602	Freshwater microbial communities from Trout Bog Lake, Vilas County, Wisconsin, United States - 30JULY2014 epilimnion	Environmental	Open in IMG/M
3300025162	Freshwater microbial communities from Finland to study Microbial Dark Matter (Phase II) - AM7a DNA metaG (SPAdes)	Environmental	Open in IMG/M
3300025316	Freshwater lake bacterial and archeal communities from Alinen Mustajarvi, Finland, to study Microbial Dark Matter (Phase II) - Alinen Mustajarvi 5m metaG (SPAdes)	Environmental	Open in IMG/M
3300025339	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE18Jul07 (SPAdes)	Environmental	Open in IMG/M
3300025353	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH06Jun08 (SPAdes)	Environmental	Open in IMG/M
3300025357	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE10Sep07 (SPAdes)	Environmental	Open in IMG/M
3300025379	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE21Jul09 (SPAdes)	Environmental	Open in IMG/M
3300025383	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE18Aug09 (SPAdes)	Environmental	Open in IMG/M
3300025387	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH20Aug07 (SPAdes)	Environmental	Open in IMG/M
3300025389	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH10Sep07 (SPAdes)	Environmental	Open in IMG/M
3300025391	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE08Jun09 (SPAdes)	Environmental	Open in IMG/M
3300025400	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH27Jul09 (SPAdes)	Environmental	Open in IMG/M
3300025405	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE13Jul09 (SPAdes)	Environmental	Open in IMG/M
3300025411	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE02Aug09 (SPAdes)	Environmental	Open in IMG/M
3300025417	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE16Oct07 (SPAdes)	Environmental	Open in IMG/M
3300025418	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE10Oct08 (SPAdes)	Environmental	Open in IMG/M
3300025426	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE27Jul09 (SPAdes)	Environmental	Open in IMG/M
3300025435	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE18Jul08 (SPAdes)	Environmental	Open in IMG/M
3300025450	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH24Aug09 (SPAdes)	Environmental	Open in IMG/M
3300025470	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH12Aug09 (SPAdes)	Environmental	Open in IMG/M
3300025598	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE02Aug07 (SPAdes)	Environmental	Open in IMG/M
3300025782	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE05Oct08 (SPAdes)	Environmental	Open in IMG/M
3300025783	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH08Jun09 (SPAdes)	Environmental	Open in IMG/M
3300025789	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE07Jul09 (SPAdes)	Environmental	Open in IMG/M
3300027896	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies -HBP12 HB (SPAdes)	Environmental	Open in IMG/M
3300031759	Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18003P	Environmental	Open in IMG/M
3300031813	Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - 1anoA	Environmental	Open in IMG/M
3300032117	Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18003	Environmental	Open in IMG/M
3300032560	Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18009	Environmental	Open in IMG/M
3300032561	Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18011	Environmental	Open in IMG/M
3300032562	Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18017	Environmental	Open in IMG/M
3300032579	Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18021	Environmental	Open in IMG/M
3300032605	Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18025_13	Environmental	Open in IMG/M
3300032665	Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18007	Environmental	Open in IMG/M
3300032675	Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18015	Environmental	Open in IMG/M
3300032753	Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18013	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
TB03JUN2009E_0302512	3300000176	Freshwater	MAQSSNGIPATNNTFNSITRQAKYEPFDLQVARGQIYGHSVLNIYGYQSAVGTS
TB18AUG2009E_0051301	3300000203	Freshwater	MAQSPNGIPSTNNSVTSITRKGQTEPFDLQVARGQIYGHSVL
TBL_comb48_EPIDRAFT_10695512	3300000439	Freshwater	MAQSPNGIPSTNNSVTSITRKGQTEPFDLQVARGQIYGHSVLN
JGI24891J29808_10037731	3300002301	Lentic	MAVQSANGIPGRNDGNNSISRQAKYEPFDLQVARGQIAGHTPLNIFGYGTTGT
JGI26470J50227_10234003	3300003375	Freshwater	MANQSPNGIPNTNNSVNSITRQAKMEPFDLQVARGQIYGHSVLNIYGYQTAVGTSFVPVW
JGI26470J50227_10246263	3300003375	Freshwater	MGQSINGIPNTNNSINSITRQAKYEPFDLQVARGQVYGHSVLNIYGYQAAVGTSFVPVWEGNSS
Ga0007850_10039313	3300003783	Freshwater	MAQSPSGIPSTNNSVMSITRSGQTEPFDLQVARGQIAGHQTVSIFG
Ga0007850_10053023	3300003783	Freshwater	MAQSPSGIPSTNNSVMSITRSGQTEPFDLQVARGQIAGHQTVSIFV
Ga0007811_10055871	3300003787	Freshwater	MAQSPNGIPSTNNQFNSVTRQAKYEPFDLQVARGQIYGHSVLNIYGYQTAVGTSFVPVWEGN
Ga0007865_10248931	3300003796	Freshwater	MAVQSSNGIPGRNDGFNSISRQSKYEPFDLQVTRGQIAGHTPLNIFGYGTTGTT
Ga0007869_10013911	3300003809	Freshwater	MATSLSXGGIXSSSTRQNKTEPFDLQVARGQVYGHSVLNIYGYQTAVGTS
Ga0007869_10050181	3300003809	Freshwater	MAQSPSGIPSTNNSVMSITRSGQTEPFDLQVARGQIAGHQTV
Ga0007869_10054093	3300003809	Freshwater	MAQSPNGVPSTGNIVNSITRQALYEPFDLQVARGQIYGHSVLNIYG
Ga0007856_10083681	3300003815	Freshwater	MAQSPNGIPSTNNQFNSITRQAKTEPFDLQVARGQIYGHSVLNIYGYQTAVGTS
Ga0007863_10127372	3300003820	Freshwater	MATSLSSGGILPSTTRQNKTEPFDLQVARGQVYGHSVLNIY
Ga0007863_10213871	3300003820	Freshwater	MAQSPNGIPSTGNVVNSITRQALYEPFNLQVARGQIYGHSIL
Ga0031655_101091801	3300003852	Freshwater Lake Sediment	MATSLSSGGILPSTTRQNKTEPFDLQVARGQVYGHSVLNIYGYQASVGT
Ga0007829_100977132	3300004095	Freshwater	MAQTNVPVTNNAVNSITRQSKTEPFDLQVARGQVYGHSVLN
Ga0066222_13182842	3300004460	Marine	MAQSPSGILATNNVVNSITRQAKVEPFDLHVSRNLVYGHRYI
Ga0065168_10209402	3300004684	Freshwater	MANQSPNGTPSTNNQFNSITRQARYEPFELQVARGQIYGHSVLNIYGYQTAVGTSFVPV
Ga0065176_10082932	3300004691	Freshwater	MAVQSPNGIPGTNNAVNSISRQSKYEPFDLQVARGQITGHTTVSLFGYQ
Ga0065171_10229351	3300004692	Freshwater	MGQSINGIPNTNNSINSITRQAKYEPFDLQVARGQVYGHSVLNIYGYQAAVGTSFVPVW
Ga0007804_10649652	3300004770	Freshwater	MAVQSSNGIPATNNTFNSITRQAKYEPFDLQVARGQVYGHSVL
Ga0007809_100854291	3300004807	Freshwater	MAQSPNGIPSTNNSIQSITRQAKTEPFELQVARGQIYGHSVLNIYGYQTA
Ga0007809_101088081	3300004807	Freshwater	MAQSPNGVPSTGNIVNSITRQALYEPFDLQVARGQIYGHS
Ga0007876_10378941	3300006071	Freshwater	MAQSPNGIPSTNNQFNSVTRQAKYEPFDLQVARGQIYGH
Ga0007806_10355502	3300006100	Freshwater	MAQSPSGIPSTNNSVMSITRSGQTEPFDLQVARGQVAGHSVVSLFGYQ
Ga0007806_10962842	3300006100	Freshwater	MAQSPSGIPSTNNSVMSITRSGQTEPFDLQVARGQIAGHQTVSIFGYQ
Ga0007813_10397532	3300006103	Freshwater	MAVQSSNGIPATNNTFNSITRQAKYEPFDLQVARGQVYGH
Ga0007813_10730541	3300006103	Freshwater	MAQSPNGIPSTNNSVMSITRSARSEPFDLQVSRGQIAGHQTLNIFGYQAAVGN
Ga0007862_10416531	3300006108	Freshwater	MAQSPSGIPSTNNSVMSITRSGKYEPFNLQVARGQIAGHSVVNLFGYNN
Ga0007807_10974022	3300006116	Freshwater	MAQSPSGIPSTNNSVMSITRSGQTEPFDLQVARGQIAGHQTVSIFGY
Ga0007866_10202893	3300006119	Freshwater	MAQTNVPVTNNAVNSITRQSKTEPFDLQVARGQVYGHSVLNIYGYQAAV
Ga0007824_10437222	3300006121	Freshwater	MAQSSSGIPGTNNQWTSITRESRTEPFDLQVARGQIGGHSI
Ga0007805_10964022	3300006127	Freshwater	MAAQSSSGIPGTNNQWTSITRESRTEPFDLQVARGQIGGHS
Ga0157560_10781312	3300012686	Freshwater	MAQSPNGVPSTGNIVNSITRQALYEPFDLQVARGQIYGHSVLNIYGYQSAV
Ga0157572_11487931	3300012703	Freshwater	MAQTNVPVTNNAVNSITRQSKTEPFDLQVARGQVYGHSVLNIYGYQAAE
Ga0164296_10286761	3300013093	Freshwater	MAQSPNGVPSTGNIVNSITRQALYEPFDLQVARGQIYGHSV
Ga0164297_101101443	3300013094	Freshwater	MAQSPSGIPSTNNSVMSITRSGRYEPFDLQVARGQI
Ga0180039_11216212	3300016688	Freshwater	MAQSPNGVPSTGNIVNSITRQALYEPFDLQVARGQIY
Ga0214246_10368141	3300020727	Freshwater	MAQSPNGIPSTNNQFNSVTRQAKYEPFDLQVARGQIYGHSVLNIYGYQTAVGTSFVPVWEGNTS
Ga0214170_10091904	3300020731	Freshwater	MAQSSNGIPATNNTFNSITRQAKYEPFDLQVARGQVYGHSVLNIYGYQAA
Ga0214170_10235792	3300020731	Freshwater	MAQSPSGIPSTNNSVMSITRSGKYEPFNLQVARGQIA
Ga0214172_10549601	3300020733	Freshwater	MAQSPNGIPSTNNSVTSITRKGQTEPFDLQVARGQIYGHSVLNIYGYQA
Ga0214174_1125462	3300021115	Freshwater	MANQSPNGIPSTNNQFNSVTRQAKYEPFDLQVARGQIYGHSVLNIYGYQTAVGTSFVPVWEGNT
Ga0214196_10282221	3300021132	Freshwater	MAQSPNGIPSTNNSVTSITRKGQTEPFDLQVARGQIYGHSVLNIYGYQASV
Ga0214175_10178292	3300021133	Freshwater	MGQSINGIPNTNNSINSITRQAKYEPFDLQVARGQVYGHSVLNIYGYQAAVGTSFVPVWE
Ga0214166_10247803	3300021139	Freshwater	MAQTNVPVTNNAVNSITRQSKTEPFDLQVARGQVYGH
Ga0214166_10493492	3300021139	Freshwater	MANQSPNGIPNTNNSVTSITRKGQTEPFDLQVARGQIYGHSVL
Ga0214166_10560272	3300021139	Freshwater	MAAQSSNGIPGTNNAVNSITRQARYEPFDLQVARGQIGGHSIVSL
Ga0214192_10763541	3300021142	Freshwater	MAQSPSGIPSTNNSVMSITRSGQTEPFDLQVARGQVAGHSVVSLFGYQTSVTAT
Ga0214192_11312062	3300021142	Freshwater	MAQSPNGIPSTNNQINSITRQAKYEPFDLQVARGQIYGHSVLNIYGYQTAVGTSFVPVW
Ga0248169_1188251	3300022602	Freshwater	MAQSPNGIPSTNNQFNSVTRQAKYEPFDLQVARGQIYGHS
Ga0209083_10180641	3300025162	Freshwater	MAQSPSGIPSTNNSVQSISRQAKYEPFDLQVSRNQ
Ga0209697_103819392	3300025316	Freshwater Lake Hypolimnion	MAQSPSGIPSTNNSVMSITRSGQTEPFDLQVARGQVAGHSVVSLFGYQPSVTATSIPI
Ga0208502_10035691	3300025339	Freshwater	MAQSPSGIPSTNNSVMSITRSGRTEPFDLQVARGQVAGHSVVSLF
Ga0208255_1224341	3300025353	Freshwater	MAQSPNGIPSTNNSVMSITRSARTEPFDLQVSRGQIAGHQTLSLFGYQSAVGN
Ga0208383_10078771	3300025357	Freshwater	MAQSPNGIPSTNNQFNSVTRQAKYEPFDLQVARGQIY
Ga0208383_10192931	3300025357	Freshwater	MAQSPNGVPSTGNIVNSITRQALYEPFDLQVARGQIYGHSVLNIY
Ga0208738_100009646	3300025379	Freshwater	MANQSPNGTPSTNNQFNSITRQARYEPFELQVARGQIYGHSVLNIYGYQT
Ga0208250_10174601	3300025383	Freshwater	MAQSPNGIPSTNNQFNSVTRQAKYEPFDLQVARGQIYGHSVL
Ga0207959_10127613	3300025387	Freshwater	MANQSPNGIPSTNNQFNSVTRQAKYEPFDLQVARGQIYGHS
Ga0208257_10501341	3300025389	Freshwater	MAQSPNGIPSTNNQFNSVTRQAKYEPFDLQVARGQ
Ga0208740_10266121	3300025391	Freshwater	MAAQSSSGIPGTNNQWTSITRESRTEPFDLQVARGQIGGHSIVSIFGY
Ga0208740_10473692	3300025391	Freshwater	MATSLSSGGIISSSTRQNKTEPFDLQVARGQVYGHSVLNIYGYQTAVGTSF
Ga0208387_10127443	3300025400	Freshwater	MAQSPSGIPSTNNSVMSITRSGQTEPFDLQVARGQIA
Ga0208387_10176501	3300025400	Freshwater	MAQSPNGIPSTNNQFNSVTRQAKYEPFDLQVARGQIYG
Ga0208381_10627302	3300025405	Freshwater	MAVQSSNGIPGRNDGFNSISRQSKYEPFDLQVTRGQIAGH
Ga0208865_10284972	3300025411	Freshwater	MAQSPSGIPSTNNSVMSITRSGQTEPFDLQVARGQIAGHQTVSIF
Ga0208616_10413481	3300025417	Freshwater	MAVQSPNGIPGRNDAVNSISRQSKYEPFDLQVARGQIAGHTTVSLFGYQGSVTTAFIP
Ga0208253_10290941	3300025418	Freshwater	MAQSPNGIPSTNNSVQSVTRQAKTEPFDLQVSRGQITGHQTLNI
Ga0208739_100054713	3300025426	Freshwater	MAQSPNGIPSTNNSIQSITRQARFEPFELQVARGQIYGHSVLNIYGY
Ga0208618_10477832	3300025435	Freshwater	MANQSSNGVPSTNNSVNSITRQAGYEPFDLQVSRNQIYGHQTLSLF
Ga0208744_10012891	3300025450	Freshwater	MAQSPNGIPSTNNQFNSVTRQAKYEPFDLQVARGQI
Ga0208389_10107555	3300025470	Freshwater	MAVQSANGIPGRNDGNNSISRQSKYEPFDLQVTRGQIAGHTPLNIFGY
Ga0208389_10145943	3300025470	Freshwater	MAQSPNGIPSTNNSVQSITRQAKTEPFDLQVSRGQITGHQTLNIFGYQAAVGNTSIPVWE
Ga0208389_10361851	3300025470	Freshwater	MAAQSSSGIPGTNNQWTSITRESRTEPFDLQVARGQIG
Ga0208379_10403891	3300025598	Freshwater	MAVQSPNGIPGTNNAVNSISRQSKYEPFDLQVARGQITGHT
Ga0208867_10372592	3300025782	Freshwater	MAQSPNGIPSTNNSVQSITRQAKYEPFDLQVCRGQITGHQAVSIFGYQ
Ga0208258_10309542	3300025783	Freshwater	MAVQSSNGIPATNNTFNSITRQAKYEPFDLQVARGQVYGHSVLNIYGYQAAVGTSFVPVWEG
Ga0208499_10743611	3300025789	Freshwater	MAQSPNGIPSTNNSVQSITRQAKTEPFDLQVSRGQITGHQTLNIFGYQ
Ga0208499_10748581	3300025789	Freshwater	MAQSPNGIPSTNNSVMSITRSARTEPFDLQVSRGQIAGHQTLSLFGYQS
Ga0209777_102162541	3300027896	Freshwater Lake Sediment	MGQSINGIPNTNNSINSITRQAKYEPFDLQVARGQVYGHSVLNIYG
Ga0209777_102450171	3300027896	Freshwater Lake Sediment	MAQSPSGIPSTNNSIQSITRQARYEPFELQVARGQIYGH
Ga0316219_11307342	3300031759	Freshwater	MANQSPSGIPNTNNSVQSISRESRTEPFDLQVARGQIYGHSVLNVFG
Ga0316217_104145842	3300031813	Freshwater	MAQSPNGVPSTGNVVNSITRQALYEPFNLQVARGQIYGHS
Ga0316218_11265041	3300032117	Freshwater	MAQSPNGIPSTNNQFNSVTRQAKYEPFDLQVARGQIYGHSV
Ga0316218_11290651	3300032117	Freshwater	MAAQSSSGIPGTNNQWTSITRESRTEPFDLQVARGQIGGHSIVSIFGYQASVGTTSIPI
Ga0316218_12072582	3300032117	Freshwater	MAQSPSGIPSTNNSVMSITRSGRYEPFDLQVARGQIAG
Ga0316223_10625243	3300032560	Freshwater	MANQSPSGIPNTNNSVQSISRESRTEPFDLQVARGQIYGHSVLNVF
Ga0316222_13040062	3300032561	Freshwater	MAVQSPNGIPGRNDAVNSISRQSKYEPFDLQVARGQIAGHTTVSLF
Ga0316226_10081431	3300032562	Freshwater	MANQSPSGIPNTNNSVQSISRESRTEPFDLQVARGQIYGHSVLNV
Ga0316226_10856333	3300032562	Freshwater	MAQSPSGIPSTNNSVMSITRSGQTEPFDLQVARGQIAGH
Ga0316226_11746961	3300032562	Freshwater	MAQSPSGIPSTNNSVMSITRSGRYEPFDLQVARGQIAGHQTV
Ga0316228_11577191	3300032579	Freshwater	MAQSPNGIPSTNNQFNSVTRQAKYEPFDLQVARGQIYGHSVLNIYGYQTAVGTSFVPVWE
Ga0316232_11297311	3300032605	Freshwater	MANQSPNGIPSTNNQFNSVTRQAKYEPFDLQVARGQIYG
Ga0316221_100240527	3300032665	Freshwater	MANQSPSGIPNTNNSVQSISRESRTEPFDLQVARGQIYGHSVL
Ga0316221_10186775	3300032665	Freshwater	MAVQSPNGIPGRNDAVNSISRQSKYEPFDLQVARGQIAGHTTVSLFGYQGS
Ga0316225_11027591	3300032675	Freshwater	MAQSPNGVPSTGNIVNSITRQALYEPFDLQVARGQIYGHSVLN
Ga0316225_11043602	3300032675	Freshwater	MANQSPNGIPSTNNQFNSVTRQAKYEPFDLQVARGQIYGHSVL
Ga0316224_100369915	3300032753	Freshwater	MANQSPSGIPNTNNSVQSISRESRTEPFDLQVARGQIYGHSVLNVFGYNTNITST
Ga0316224_10131741	3300032753	Freshwater	MAVQSPNGIPGRNDAVNSISRQSKYEPFDLQVARGQIAGHTTVSLFGYQGSVTT

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F102000

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences