Metagenome / Metatranscriptome Family F101996

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F101996
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	47 residues
Representative Sequence	MDDVNAVKALEPVLDYSIRIVGSGIEIFGVVIIVTGIAWSTYRQL
Number of Associated Samples	91
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	95.10 %
% of genes near scaffold ends (potentially truncated)	98.04 %
% of genes from short scaffolds (< 2000 bps)	88.24 %
Associated GOLD sequencing projects	88
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.55

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (86.275 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (16.667 % of family members)
Environment Ontology (ENVO)	Unclassified (29.412 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (53.922 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 58.90% β-sheet: 0.00% Coil/Unstructured: 41.10%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.55
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.55
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF03625	DUF302	40.20
PF00856	SET	31.37
PF13450	NAD_binding_8	6.86
PF01593	Amino_oxidase	4.90
PF07992	Pyr_redox_2	1.96
PF01321	Creatinase_N	1.96
PF03401	TctC	0.98
PF00106	adh_short	0.98
PF00034	Cytochrom_C	0.98
PF07784	DUF1622	0.98
PF07592	DDE_Tnp_ISAZ013	0.98
PF00300	His_Phos_1	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG3439	Uncharacterized conserved protein, DUF302 family	Function unknown [S]	40.20
COG0006	Xaa-Pro aminopeptidase	Amino acid transport and metabolism [E]	1.96
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.98
COG4828	Uncharacterized membrane protein	Function unknown [S]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	86.27 %
Unclassified	root	N/A	13.73 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	86.27 %
Unclassified	root	N/A	13.73 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	86.27 %
Unclassified	root	N/A	13.73 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	80.39 %
Unclassified	root	N/A	13.73 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.98 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	58.82 %
Unclassified	root	N/A	13.73 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	7.84 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	32.35 %
Unclassified	root	N/A	13.73 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	8.82 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	7.84 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	13.73 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	8.82 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	7.84 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	4.90 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	2.94 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	0.98 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	13.73 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	8.82 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	7.84 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4.90 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	2.94 %
Rhizobium/Agrobacterium group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group	0.98 %
Propionibacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	13.73 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	8.82 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	7.84 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	2.94 %
Rhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	0.98 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.98 %
Microlunatus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Microlunatus	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	13.73 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	8.82 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	7.84 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	2.94 %
Microlunatus panaciterrae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Microlunatus → Microlunatus panaciterrae	0.98 %
Rhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	0.98 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459003\|FZ032L002IKYKO	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	520	Open in IMG/M
3300000363\|ICChiseqgaiiFebDRAFT_13391838	Not Available	563	Open in IMG/M
3300000655\|AF_2010_repII_A100DRAFT_1018811	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1308	Open in IMG/M
3300000793\|AF_2010_repII_A001DRAFT_10027644	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1340	Open in IMG/M
3300000793\|AF_2010_repII_A001DRAFT_10037441	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1119	Open in IMG/M
3300002459\|JGI24751J29686_10139030	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	514	Open in IMG/M
3300002568\|C688J35102_117962473	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	519	Open in IMG/M
3300002568\|C688J35102_118592711	Not Available	575	Open in IMG/M
3300002568\|C688J35102_119351750	All Organisms → cellular organisms → Bacteria → Proteobacteria	679	Open in IMG/M
3300004633\|Ga0066395_10982283	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	514	Open in IMG/M
3300005160\|Ga0066820_1000913	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1175	Open in IMG/M
3300005330\|Ga0070690_101079558	Not Available	636	Open in IMG/M
3300005332\|Ga0066388_107117901	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	562	Open in IMG/M
3300005578\|Ga0068854_102106828	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	521	Open in IMG/M
3300005764\|Ga0066903_108306101	Not Available	531	Open in IMG/M
3300006046\|Ga0066652_101265735	All Organisms → cellular organisms → Bacteria → Proteobacteria	697	Open in IMG/M
3300006048\|Ga0075363_100700391	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	612	Open in IMG/M
3300006163\|Ga0070715_10030174	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2190	Open in IMG/M
3300006178\|Ga0075367_10611822	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	692	Open in IMG/M
3300006572\|Ga0074051_11542466	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1467	Open in IMG/M
3300006852\|Ga0075433_11565524	Not Available	569	Open in IMG/M
3300009036\|Ga0105244_10166110	All Organisms → cellular organisms → Bacteria	1052	Open in IMG/M
3300009092\|Ga0105250_10226777	All Organisms → cellular organisms → Bacteria	794	Open in IMG/M
3300010036\|Ga0126305_10575789	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	755	Open in IMG/M
3300010043\|Ga0126380_12021221	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	528	Open in IMG/M
3300010047\|Ga0126382_11657284	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	595	Open in IMG/M
3300010333\|Ga0134080_10512754	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	572	Open in IMG/M
3300010359\|Ga0126376_10042159	All Organisms → cellular organisms → Bacteria	3178	Open in IMG/M
3300010359\|Ga0126376_10580923	All Organisms → cellular organisms → Bacteria → Proteobacteria	1055	Open in IMG/M
3300010373\|Ga0134128_10574077	All Organisms → cellular organisms → Bacteria → Proteobacteria	1256	Open in IMG/M
3300010398\|Ga0126383_10011659	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	6423	Open in IMG/M
3300010398\|Ga0126383_11002761	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	923	Open in IMG/M
3300012198\|Ga0137364_11257232	Not Available	553	Open in IMG/M
3300012199\|Ga0137383_10832747	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	673	Open in IMG/M
3300012494\|Ga0157341_1047462	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	516	Open in IMG/M
3300012915\|Ga0157302_10015495	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1861	Open in IMG/M
3300012948\|Ga0126375_11873089	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	526	Open in IMG/M
3300012987\|Ga0164307_10542418	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	886	Open in IMG/M
3300014326\|Ga0157380_13391525	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	510	Open in IMG/M
3300015371\|Ga0132258_11103187	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2006	Open in IMG/M
3300015373\|Ga0132257_100087927	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3552	Open in IMG/M
3300015373\|Ga0132257_100568427	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1398	Open in IMG/M
3300016319\|Ga0182033_10225581	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1507	Open in IMG/M
3300016371\|Ga0182034_11237669	All Organisms → cellular organisms → Bacteria → Proteobacteria	650	Open in IMG/M
3300016387\|Ga0182040_10329312	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1177	Open in IMG/M
3300016387\|Ga0182040_11233069	All Organisms → cellular organisms → Bacteria → Proteobacteria	630	Open in IMG/M
3300016422\|Ga0182039_11320389	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	654	Open in IMG/M
3300018056\|Ga0184623_10240329	All Organisms → cellular organisms → Bacteria → Proteobacteria	828	Open in IMG/M
3300018076\|Ga0184609_10031853	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2172	Open in IMG/M
3300018433\|Ga0066667_10818770	All Organisms → cellular organisms → Bacteria → Proteobacteria	794	Open in IMG/M
3300019361\|Ga0173482_10642509	Not Available	540	Open in IMG/M
3300021078\|Ga0210381_10161898	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	764	Open in IMG/M
3300021363\|Ga0193699_10099495	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1172	Open in IMG/M
3300025918\|Ga0207662_10191770	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Microlunatus → Microlunatus panaciterrae	1319	Open in IMG/M
3300025944\|Ga0207661_10112397	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2306	Open in IMG/M
3300026121\|Ga0207683_12013601	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	526	Open in IMG/M
3300026990\|Ga0207824_1006023	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1396	Open in IMG/M
3300027011\|Ga0207740_1003539	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2574	Open in IMG/M
3300027480\|Ga0208993_1001547	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3616	Open in IMG/M
3300027880\|Ga0209481_10524027	Not Available	612	Open in IMG/M
3300027882\|Ga0209590_10156732	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1416	Open in IMG/M
3300028381\|Ga0268264_11532704	All Organisms → cellular organisms → Bacteria	677	Open in IMG/M
3300028608\|Ga0247819_10366555	All Organisms → cellular organisms → Bacteria	823	Open in IMG/M
3300028711\|Ga0307293_10258107	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	553	Open in IMG/M
3300028712\|Ga0307285_10041481	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1129	Open in IMG/M
3300028716\|Ga0307311_10020888	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1628	Open in IMG/M
3300028717\|Ga0307298_10017761	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1825	Open in IMG/M
3300028719\|Ga0307301_10045550	All Organisms → cellular organisms → Bacteria → Proteobacteria	1343	Open in IMG/M
3300028768\|Ga0307280_10212749	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	686	Open in IMG/M
3300028778\|Ga0307288_10143838	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	894	Open in IMG/M
3300028787\|Ga0307323_10269733	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	613	Open in IMG/M
3300028807\|Ga0307305_10273383	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	770	Open in IMG/M
3300028876\|Ga0307286_10010654	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2841	Open in IMG/M
3300031231\|Ga0170824_121790880	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1752	Open in IMG/M
3300031469\|Ga0170819_14934656	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1758	Open in IMG/M
3300031549\|Ga0318571_10340552	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	573	Open in IMG/M
3300031549\|Ga0318571_10382009	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	546	Open in IMG/M
3300031561\|Ga0318528_10654453	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	563	Open in IMG/M
3300031640\|Ga0318555_10157434	All Organisms → cellular organisms → Bacteria → Proteobacteria	1217	Open in IMG/M
3300031680\|Ga0318574_10104174	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1576	Open in IMG/M
3300031719\|Ga0306917_10757183	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	762	Open in IMG/M
3300031740\|Ga0307468_100300862	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1164	Open in IMG/M
3300031744\|Ga0306918_11163084	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	596	Open in IMG/M
3300031771\|Ga0318546_10612835	Not Available	766	Open in IMG/M
3300031777\|Ga0318543_10062051	All Organisms → cellular organisms → Bacteria → Proteobacteria	1548	Open in IMG/M
3300031797\|Ga0318550_10499295	Not Available	587	Open in IMG/M
3300031821\|Ga0318567_10116131	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1459	Open in IMG/M
3300031831\|Ga0318564_10549974	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	500	Open in IMG/M
3300031854\|Ga0310904_11010961	Not Available	592	Open in IMG/M
3300031890\|Ga0306925_10434509	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1404	Open in IMG/M
3300031890\|Ga0306925_11367607	Not Available	700	Open in IMG/M
3300031897\|Ga0318520_10003169	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6187	Open in IMG/M
3300031912\|Ga0306921_10156992	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2663	Open in IMG/M
3300031912\|Ga0306921_11487769	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	741	Open in IMG/M
3300031941\|Ga0310912_10704409	Not Available	783	Open in IMG/M
3300031945\|Ga0310913_10271715	All Organisms → cellular organisms → Bacteria → Proteobacteria	1193	Open in IMG/M
3300031945\|Ga0310913_11130342	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	547	Open in IMG/M
3300031947\|Ga0310909_10156274	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1878	Open in IMG/M
3300032001\|Ga0306922_11383530	All Organisms → cellular organisms → Bacteria → Proteobacteria	708	Open in IMG/M
3300032025\|Ga0318507_10204290	Not Available	853	Open in IMG/M
3300032066\|Ga0318514_10102988	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	1450	Open in IMG/M
3300032076\|Ga0306924_11884235	All Organisms → cellular organisms → Bacteria → Proteobacteria	620	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	85.29%
Host-Associated	Host-Associated	14.71%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	82.35%
Plants	Host-Associated → Plants	14.71%
Aquatic	Environmental → Aquatic	2.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	82.35%
Rhizoplane	Host-Associated → Plants → Rhizoplane	7.84%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.90%
Sediment	Environmental → Aquatic → Sediment	1.96%
Roots	Host-Associated → Plants → Roots	1.96%
Freshwater	Environmental → Aquatic → Freshwater	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	69.61%
Loam	Environmental → Terrestrial → Soil → Loam	12.75%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.90%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.94%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.96%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	1.96%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.98%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.98%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	35.29%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	28.43%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.90%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.92%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.94%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.96%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.96%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	1.96%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	16.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	13.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	12.75%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	6.86%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	4.90%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	4.90%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.94%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.94%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.94%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.96%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.96%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	1.96%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.96%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.98%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.98%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.98%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.98%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.98%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.98%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.98%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.98%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.98%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.98%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.98%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459003	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect MP BIO 1O1 lysis 0-21cm	Environmental	Open in IMG/M
3300000363	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000655	Forest soil microbial communities from Amazon forest - 2010 replicate II A100	Environmental	Open in IMG/M
3300000793	Forest soil microbial communities from Amazon forest - 2010 replicate II A001	Environmental	Open in IMG/M
3300002459	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6	Host-Associated	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005160	Soil and rhizosphere microbial communities from Laval, Canada - mgLMB	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006048	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3	Host-Associated	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006178	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2	Host-Associated	Open in IMG/M
3300006572	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHPB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300009036	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG	Host-Associated	Open in IMG/M
3300009092	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG	Host-Associated	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012494	Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.2.yng.030610	Host-Associated	Open in IMG/M
3300012915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S103-311B-2	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300018056	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300021078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo	Environmental	Open in IMG/M
3300021363	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3c2	Environmental	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026990	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 73 (SPAdes)	Environmental	Open in IMG/M
3300027011	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 29 (SPAdes)	Environmental	Open in IMG/M
3300027480	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM2_M3 (SPAdes)	Environmental	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028608	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Xylose_Day6	Environmental	Open in IMG/M
3300028711	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150	Environmental	Open in IMG/M
3300028712	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_139	Environmental	Open in IMG/M
3300028716	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_198	Environmental	Open in IMG/M
3300028717	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_158	Environmental	Open in IMG/M
3300028719	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_182	Environmental	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300028778	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_142	Environmental	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300028876	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031831	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
E4A_08683100	2170459003	Grass Soil	MDDMSAFKTLEPTIDYSIRVVGSGIEIFGVLIIVTGIAWSTYRQLR
ICChiseqgaiiFebDRAFT_133918382	3300000363	Soil	MDEMNAAKALEPVVDSFIRVVGSGIEVFGVVVIVIGIAWSTYRQLRQPVSEQDSDVYKIR
AF_2010_repII_A100DRAFT_10188113	3300000655	Forest Soil	MMENAVKSFEPSIDHFIRIIGSGIEIFGVLVIVTGIAWSTYRQLRQPISEQDA
AF_2010_repII_A001DRAFT_100276443	3300000793	Forest Soil	MMENAVKSFEPSIDHLIRIIGSGIEIFGVLVIVTGIAWSTYRQLRQPISEQDAD
AF_2010_repII_A001DRAFT_100374413	3300000793	Forest Soil	MENAVKSFEPSIDYLIRIIGSGIEIFGVLVIVTGIAWSTYRQLRQPISEQDAD
JGI24751J29686_101390301	3300002459	Corn, Switchgrass And Miscanthus Rhizosphere	MDDVNAVRALEPVVDYSIRVVGSGIEIFGVIIIVTGIAWSTYRQLRQPISEQDSNV
C688J35102_1179624732	3300002568	Soil	MDDVNTVKALEPVLDYSIRIVGSGIELFGVVVIVTGIAWSTYRQL
C688J35102_1185927111	3300002568	Soil	MDDVNAVKALEPVLDYSIRIVGSGIEIFGVVIIVTGIAWSTYRQL
C688J35102_1193517502	3300002568	Soil	MNEAIAFKDLESLTDCTIRVVGSGIEIFGVLIIVTGIAWSTYLHLRRPM
Ga0066395_109822832	3300004633	Tropical Forest Soil	MDDVTAFKTLEPVVDHAIRVVGSGIEIFGVLIIVTGIAWS
Ga0066820_10009131	3300005160	Soil	MDDVNTVKALEPVLDYSIRIVGSGIELFGVVVIVTGIAWSTYRQLRQP
Ga0070690_1010795582	3300005330	Switchgrass Rhizosphere	MDDVNAVRTLEPVLDYSIRIVGSGIEIFGVIIIVTGIAWSTYRQLRQ
Ga0066388_1071179012	3300005332	Tropical Forest Soil	MDQVTALKGLESLSDHGIRIVGSGIEIFGVLIIVTGIAWST
Ga0068854_1021068281	3300005578	Corn Rhizosphere	MDDVNAVRTLEPVIDYSIRVVGSGIEIFGVIIIVTGIAW
Ga0066903_1083061011	3300005764	Tropical Forest Soil	MDEVNVTRTLEPGIDAFIRVVGSGIEVFGVLVIVIGIAWSTYRQLRQ
Ga0066652_1012657352	3300006046	Soil	MDDVTAFKALEPVVDHAIRLIGGGIEIFGVLVIVTGIAWSTFRQLR
Ga0075363_1007003912	3300006048	Populus Endosphere	MDDVNTVKALEPVLDYSIRIVGSGIELFGVVIIVTGIAWS
Ga0070715_100301743	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MDDVNTVKALEPVLDYSIRIVGSGIELFGVVVIVTGIAWSTYRQLRQPISLQDS
Ga0075367_106118222	3300006178	Populus Endosphere	MDDVNTVKALEPVLDYSIRIVGSGIELFGVVIIVTGIAWSTYRQLRQPIAQQDSNVYKI
Ga0074051_115424663	3300006572	Soil	MDDVNTVKALEPVLDYFIRIVGSGIELFGVVIIVTGIA
Ga0075433_115655241	3300006852	Populus Rhizosphere	MDDVNAVRALEPVVDYSIRVVGSGIEIFGVIIIVTGIAWST
Ga0105244_101661102	3300009036	Miscanthus Rhizosphere	MDDVNTVKALEPVLDYSIRIVGSGIELFGVVIIVTGIGWSTYRQLRQPIALQDSNVYKIR
Ga0105250_102267772	3300009092	Switchgrass Rhizosphere	MDDVNTVKALEPVLDYSIRIVGSGIELFGVVVIVTGIAWSTYRQLRQPISLQDSNV
Ga0126305_105757891	3300010036	Serpentine Soil	MDDVNTVKALEPVIDYSIRIVGSGIELFGVVIIVTGIAWSTYRQLRQPIAL
Ga0126380_120212211	3300010043	Tropical Forest Soil	MDHATALTLESIIDPAIRVVGSGIEIFGVLIIVIGIAWSTY
Ga0126382_116572842	3300010047	Tropical Forest Soil	MDDVTAFKTLEPVVDHAIRVVGSGIEVFGVLIIVTGIAWSTFRQLLQRISDQDSEVYKIR
Ga0134080_105127541	3300010333	Grasslands Soil	MDDATALKTLEPVVDHAIRVIGSGIEIFGVLIIVTGIAWSTYRQLRQRISEQES
Ga0126376_100421591	3300010359	Tropical Forest Soil	MDDATALKMLESLVDAGIRIIGSGVEIFGVLIIVTGIAWSTFRQLRQRIPEQDSDVYKVRIG
Ga0126376_105809232	3300010359	Tropical Forest Soil	MDDATALTSLEPVVDLAIRVVGSGIEIFGVLVIVAGIA*
Ga0134128_105740771	3300010373	Terrestrial Soil	MNEATAFKDLESLTDYTIRLVGSGIEIFGVLIIVTGIAWSTYLH
Ga0126383_100116598	3300010398	Tropical Forest Soil	MDDVTAFKTLEPVVDHAIRIVGSGIEIFGVLIIVSGIAWSTYRQLRQPISEQ
Ga0126383_110027611	3300010398	Tropical Forest Soil	MDEVIALKGLESLSDHGIRIVGSGIEIFGVLIIVTGIAWSTYVHFRRPM
Ga0137364_112572322	3300012198	Vadose Zone Soil	MDEMNAAKTLEPVVDSFIRVVGSGIEVFGVVVIVIGIAWSTYRQLRQPVSEQDS
Ga0137383_108327472	3300012199	Vadose Zone Soil	MDDATNFKGFEALGDHAIRVVGSGIEIFGVLIIVT
Ga0157341_10474621	3300012494	Arabidopsis Rhizosphere	MNEATAFKDLESLTDYTIRVVGSGIEIFGVLIIVTGIAWSTYLHLRRPMP
Ga0157302_100154951	3300012915	Soil	MDDVNTVRALEPVLDYSIRVVGSGIELFGVIIIVTGIAWSTYRQLRQPISLQ
Ga0126375_118730892	3300012948	Tropical Forest Soil	MDDVTAFKALEPVVDHAIRVIGGGIEIFGVLVIVTGIA
Ga0164307_105424181	3300012987	Soil	MDDVNTVKALEPVLDYFIRIVGSGIELFGVVIIVTGIAWSTYRQLRQ
Ga0157380_133915251	3300014326	Switchgrass Rhizosphere	MDDVNTVKALEPVLDYSIRIVGSGIELFGVVIIVTGIAWSTYRQLRQPIALQDSNV
Ga0132258_111031873	3300015371	Arabidopsis Rhizosphere	MDDVNAVKALEPMLDYSIRVVGSGIEIFGVLIIVTGIAWS
Ga0132257_1000879271	3300015373	Arabidopsis Rhizosphere	MDDVNAVRALEPVVDYSIRVVGSGIEIFGVIIIVT
Ga0132257_1005684271	3300015373	Arabidopsis Rhizosphere	MDDVTTVKALEPVIDYSIRIVGSAIELFGVVIIVTGIAWSTYRQLRQPIAL
Ga0182033_102255811	3300016319	Soil	MDEATTIVAKGLESLTDHGIQVVGSGIEIFGVLIIVTG
Ga0182034_112376692	3300016371	Soil	MDDVTAFNTLELAVNHAIRLVGSGIEIFGVVIIVTGIAWSTYHQLRQRISD
Ga0182040_103293123	3300016387	Soil	MDEVTALKGLESLSDHGIRIVGSGIEIFGVLIIVTGIAWSTYVHF
Ga0182040_112330692	3300016387	Soil	MDEVIALKDLEALSDHSIRIVGSGSEIFGGLIIVTGIAWST
Ga0182039_113203891	3300016422	Soil	MDDATAFKTLEPLVDLGIRHIASGIEIFGVLIIVTGIPWSTFRPLRQQISEQDSE
Ga0184623_102403291	3300018056	Groundwater Sediment	MGDVTAHGTVESVIDPAIRVVGSGIEIFGVLIIVIGIART
Ga0184609_100318531	3300018076	Groundwater Sediment	MDDVNAVKAFEPVLDYSIRVVGSGIEIFGVVIIVTGIAWSTYRQLR
Ga0066667_108187702	3300018433	Grasslands Soil	MDDAIVFKGLESLSGYVIPLVGSGIEIFGVLIIVTGIAWSTYL
Ga0173482_106425091	3300019361	Soil	MDDVNTVKALEPVLDYSIRIVGSGIELFGVVIIVTGIAWSTY
Ga0210381_101618981	3300021078	Groundwater Sediment	MDDVNAVKAFEPVLDYSIRVVGSGIEIFGVVIIVTGIAWSTYRQLRQPISE
Ga0193699_100994951	3300021363	Soil	MDDVNAVKALEPVLDYSIRVVGSGIEIFGVVIIVTGIAWSTFRQL
Ga0207662_101917703	3300025918	Switchgrass Rhizosphere	MDDVNAVRTLEPVLDYSIRVVGSGIEIFGVIIIVTGIAWSTYRQLRQPIALQDSNVYKI
Ga0207661_101123971	3300025944	Corn Rhizosphere	MDDVNTVKALEPVLDYSIRIVGSGIELFGVVVIVTG
Ga0207683_120136012	3300026121	Miscanthus Rhizosphere	MDDVNAVRALEPVVDYSIRVVGSGIEIFGVIIIVTGIAWSTYRQLRQPISEQD
Ga0207824_10060231	3300026990	Tropical Forest Soil	MDDATAFKGFEALGDHAIRVVGSGIEIFGVLIIVTGIAWSTCLHLR
Ga0207740_10035394	3300027011	Tropical Forest Soil	MDEVIAFKGLESLSDHGIRIVGSGIEIFGVLIIVAGIAWSTYLHLR
Ga0208993_10015474	3300027480	Forest Soil	MDDVNAVRTLEPFVDQSIRIVGSGLEIFGVLIIVIGIAWSTYR
Ga0209481_105240272	3300027880	Populus Rhizosphere	MDDVNAVRALEPVVDYSIRVVGSGIEIFGVIIIVTGIAWSTYRQ
Ga0209590_101567323	3300027882	Vadose Zone Soil	MDDPTALKTLEPAADLGIRIVGSGIELFGVLIIVAGIAWSTYR
Ga0268264_115327042	3300028381	Switchgrass Rhizosphere	MDDVNTVKALEPVLDYSIRIVGSGIELFGVVVIVTGI
Ga0247819_103665551	3300028608	Soil	MDDVNTVKALEPVLDYSIRIVGSGIELFGVVVIVTGIAWSTYRQLRQPISL
Ga0307293_102581072	3300028711	Soil	MDDVNAVKALEPVIDYSIRVVGSGIEIFGVVIIVTGIAWSTYRQLRQPISEQVSNVYK
Ga0307285_100414811	3300028712	Soil	MDDVNTVKALEPVIDYSIRIVGSGIELFGVVIIVTGIAWSTYRQLRQPISLQDSN
Ga0307311_100208881	3300028716	Soil	MDDVNAVKALEPVLDYSIRVVGSGIEIFGVVIIVTGIAWSTYRQLRQPISE
Ga0307298_100177611	3300028717	Soil	MDDVTTVKALEPVIDYSIRIVGSGIELFGVVIIVTGIAWSTYRQLRQPISLQDSNVY
Ga0307301_100455503	3300028719	Soil	MDDVNAVKALEPVLDYSIRVVGSGIEIFGVVIIVT
Ga0307280_102127491	3300028768	Soil	MDDVNAVKALEPVLDYSIRVVGSGIEIFGVVIIVTGIAWSTYRQLRQPISEQVSN
Ga0307288_101438381	3300028778	Soil	MDDVTTVKALEPVIDYSIRIVGSGIELFGVVIIVTG
Ga0307323_102697331	3300028787	Soil	MDDVNTVKALEPVIDYSIRIVGSGIELFGVVIIVTGIAWSTYRQLRQPISLQDSNVY
Ga0307305_102733831	3300028807	Soil	MDDVNAVKAFEPVLDYSIRVVGSGIEIFGVVIIVTGIAWSTYRQLRQPISEQDSN
Ga0307286_100106541	3300028876	Soil	MDDVNAVKALEPVLDYSIRVVGSGIEIFGVVIIVTGIAWSTYRQLRQPISEQ
Ga0170824_1217908803	3300031231	Forest Soil	MDDVNAVKALEPVLDYSIRIVGSGIEIFGVLIIVTGIAWS
Ga0170819_149346563	3300031469	Forest Soil	MDDVNAVKALEPVLDYSIRIVGSGIEIFGVLIIVTGIAWSTYRQMRQPISEQ
Ga0318571_103405521	3300031549	Soil	MDDVNAFKTLEPVVDHAIRIVGSGIEIFGVLIIVTGIAWSTFRQLRQRISD
Ga0318571_103820092	3300031549	Soil	MDDVTAFKTLEPVVDHAIRVVGSGIEIFGVLIIVTGIAWSTFRQLPQRI
Ga0318528_106544532	3300031561	Soil	MDELTAFKGLEWVSDHGIRFVGSGIEIFGVLIIVAGIAWSTYVHFRRPM
Ga0318555_101574343	3300031640	Soil	MDDVTAFKTLEPVVDHAIRVVGSGIEIFGVLIIVT
Ga0318574_101041743	3300031680	Soil	MDDVTAFKTLEPVVDHAIRVVGSGIEIFGVLIIVTGIAWSTFRQLLQRI
Ga0306917_107571831	3300031719	Soil	MIGCGPAAVEGAKMENAAKSFEPSIDQFIRIIGSGIEIFGVLVIVIGIVWSTYRQLQQPISEQDAD
Ga0307468_1003008621	3300031740	Hardwood Forest Soil	MDDVNTVKALEPVLDYFIRIVGSGIELFGVVIIVTGIAWSTYRQ
Ga0306918_111630842	3300031744	Soil	MDEVTALKGLESLSDHGIRIVGSGIEIFGVLIIVT
Ga0318546_106128352	3300031771	Soil	MDDVNAFKTLEPVVDHAIRIVGSGIEIFGVLIIVTGIAWST
Ga0318543_100620513	3300031777	Soil	MDDVTAFKTLEPVVDHAIRVVGSGIEIFGVLIIVTGIA
Ga0318550_104992952	3300031797	Soil	MENAVKNFEPSIDHLIRIIGSGIEIFGVLVIVTGIAWSTYRQLRQPISEQDADV
Ga0318567_101161313	3300031821	Soil	MDDVTAFKTLEPVVDHAIRVVGSGIEIFGVLIIVTGIAWSTFRQLLQRISDQDSEV
Ga0318564_105499742	3300031831	Soil	MDEVTAFKGLESLSDHGIRIVGSGIEIFGVLIIVAGIAWST
Ga0310904_110109611	3300031854	Soil	MTMLRLRLLDGDAAMDDVNTVKALEPVLDYFIRIVGSGIELFGVVIIVTGIAWSTYRQLRQPISLQDSNVYKI
Ga0306925_104345091	3300031890	Soil	MDEVIAFKGLESLSDHGIRIVGSGIEIFGVLIIVAGIAWSTYVHL
Ga0306925_113676072	3300031890	Soil	MDDAMSFKFLEPLTDLGIRIVGSGIEIFGVLIIVTGIAWSTYRQLRWQVSEQDSDV
Ga0318520_100031698	3300031897	Soil	MDDVTAFKTLEPVVDHAIRVVGSGIEIFGVLIIVTGIAW
Ga0306921_101569921	3300031912	Soil	MDDATAFKILESLTDYAIRMVGSGIEVFGVLIIVT
Ga0306921_114877691	3300031912	Soil	MDDATAFKGFEALGDHAIRVIGSGIEIFGVLIIVTGIAWSTCLRL
Ga0310912_107044092	3300031941	Soil	MENAVKNFEPSIDHLIRIIGSGIEIFGVLVIVTGIAWSTYRQLRQPISEQDADVY
Ga0310913_102717153	3300031945	Soil	MPADMNAFNALEPAVDHAIRIVGSGIEVFGVVIIVTGIAWSTYRQLRQRI
Ga0310913_111303422	3300031945	Soil	MDDATAFKGFEALGDHAIRVIGSGIEIFGVLIIVTGIAWSTCL
Ga0310909_101562744	3300031947	Soil	MDDAMSFKFLEPLTDLGIRVVGSGIEIFGVLIIVTGIAWS
Ga0306922_113835302	3300032001	Soil	MDDATAFKTLEPLVDLGIRLIGSGIEIFGVLIIVTGIAWSTFRQLRQQISEQ
Ga0318507_102042902	3300032025	Soil	MDDVNAFKTLEPVVDHAIRIVGSGIEIFGVLIIVTGIAWSTFRQLRQRISDQ
Ga0318514_101029882	3300032066	Soil	MDEVIALKGLESLSDHGIRIVGSGIEIFGVLIIVTGIAWST
Ga0306924_118842352	3300032076	Soil	MDEVTALKGLESLSDHGIRIVGSGIEIFGVLIIVTG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F101996

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences