Metagenome / Metatranscriptome Family F101971

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F101971
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	54 residues
Representative Sequence	MSDSFVEKLTLIVATVLWARASEFDFPRRPATGWLQDVASREIVRAVLKRKDID
Number of Associated Samples	94
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	82.35 %
% of genes near scaffold ends (potentially truncated)	30.39 %
% of genes from short scaffolds (< 2000 bps)	80.39 %
Associated GOLD sequencing projects	88
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.37

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (99.020 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (24.510 % of family members)
Environment Ontology (ENVO)	Unclassified (32.353 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (44.118 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 53.66% β-sheet: 0.00% Coil/Unstructured: 46.34%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.37
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.37
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF02518	HATPase_c	50.00
PF14417	MEDS	30.39
PF13493	DUF4118	9.80
PF00072	Response_reg	5.88
PF02790	COX2_TM	0.98
PF07732	Cu-oxidase_3	0.98
PF03364	Polyketide_cyc	0.98
PF13492	GAF_3	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG1622	Heme/copper-type cytochrome/quinol oxidase, subunit 2	Energy production and conversion [C]	0.98
COG2132	Multicopper oxidase with three cupredoxin domains (includes cell division protein FtsP and spore coat protein CotA)	Cell cycle control, cell division, chromosome partitioning [D]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	99.02 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.98 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	82.35 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	9.80 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	0.98 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	82.35 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	8.82 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	0.98 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	82.35 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	8.82 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	0.98 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	82.35 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	8.82 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	0.98 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	82.35 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	8.82 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	0.98 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	82.35 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1.96 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	0.98 %
Unclassified	root	N/A	0.00 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908021\|BSRL3_Contig_6678	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	607	Open in IMG/M
2170459003\|FZ032L002G3IY5	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	502	Open in IMG/M
2170459007\|GJ61VE201CCJAD	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	518	Open in IMG/M
2170459009\|GA8DASG01ALCDK	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	513	Open in IMG/M
3300002557\|JGI25381J37097_1040910	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	776	Open in IMG/M
3300002917\|JGI25616J43925_10270565	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	635	Open in IMG/M
3300005093\|Ga0062594_100740459	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	896	Open in IMG/M
3300005176\|Ga0066679_10474455	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	818	Open in IMG/M
3300005180\|Ga0066685_10275552	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1162	Open in IMG/M
3300005180\|Ga0066685_10694299	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	698	Open in IMG/M
3300005184\|Ga0066671_10005933	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4496	Open in IMG/M
3300005184\|Ga0066671_10158664	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1326	Open in IMG/M
3300005294\|Ga0065705_10234793	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1250	Open in IMG/M
3300005339\|Ga0070660_100472561	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1041	Open in IMG/M
3300005436\|Ga0070713_100913480	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	845	Open in IMG/M
3300005440\|Ga0070705_100178331	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1437	Open in IMG/M
3300005441\|Ga0070700_101185228	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	637	Open in IMG/M
3300005450\|Ga0066682_10339743	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	968	Open in IMG/M
3300005451\|Ga0066681_10927263	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	521	Open in IMG/M
3300005454\|Ga0066687_10213701	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1059	Open in IMG/M
3300005456\|Ga0070678_100714538	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	904	Open in IMG/M
3300005560\|Ga0066670_10072382	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1857	Open in IMG/M
3300006028\|Ga0070717_10474019	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1130	Open in IMG/M
3300006034\|Ga0066656_10128638	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1566	Open in IMG/M
3300006163\|Ga0070715_10234498	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	951	Open in IMG/M
3300007255\|Ga0099791_10267958	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	812	Open in IMG/M
3300007255\|Ga0099791_10300427	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	765	Open in IMG/M
3300007258\|Ga0099793_10083529	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1460	Open in IMG/M
3300009092\|Ga0105250_10580733	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	517	Open in IMG/M
3300009101\|Ga0105247_10637555	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	795	Open in IMG/M
3300009137\|Ga0066709_103060478	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	612	Open in IMG/M
3300009147\|Ga0114129_10007882	All Organisms → cellular organisms → Bacteria	15155	Open in IMG/M
3300009162\|Ga0075423_11170255	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	820	Open in IMG/M
3300009553\|Ga0105249_10949543	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	928	Open in IMG/M
3300010159\|Ga0099796_10388838	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	609	Open in IMG/M
3300010337\|Ga0134062_10622771	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	558	Open in IMG/M
3300010373\|Ga0134128_10215495	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2159	Open in IMG/M
3300010403\|Ga0134123_11924932	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	648	Open in IMG/M
3300012198\|Ga0137364_10267931	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1264	Open in IMG/M
3300012199\|Ga0137383_10036496	All Organisms → cellular organisms → Bacteria	3480	Open in IMG/M
3300012200\|Ga0137382_10178923	All Organisms → cellular organisms → Bacteria	1450	Open in IMG/M
3300012201\|Ga0137365_10008597	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	8120	Open in IMG/M
3300012203\|Ga0137399_10044981	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3165	Open in IMG/M
3300012203\|Ga0137399_10326922	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1271	Open in IMG/M
3300012205\|Ga0137362_10244175	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1550	Open in IMG/M
3300012205\|Ga0137362_10886103	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	763	Open in IMG/M
3300012357\|Ga0137384_11175084	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	611	Open in IMG/M
3300012362\|Ga0137361_10632805	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	979	Open in IMG/M
3300012918\|Ga0137396_10025229	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3874	Open in IMG/M
3300012923\|Ga0137359_11343035	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	603	Open in IMG/M
3300012925\|Ga0137419_10339578	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1159	Open in IMG/M
3300012930\|Ga0137407_10942039	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	817	Open in IMG/M
3300012944\|Ga0137410_10292933	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1287	Open in IMG/M
3300012951\|Ga0164300_10379995	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	769	Open in IMG/M
3300012957\|Ga0164303_10163922	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1192	Open in IMG/M
3300012986\|Ga0164304_10558701	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	847	Open in IMG/M
3300013307\|Ga0157372_10869088	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1047	Open in IMG/M
3300015077\|Ga0173483_10024166	All Organisms → cellular organisms → Bacteria	2170	Open in IMG/M
3300015242\|Ga0137412_10010009	All Organisms → cellular organisms → Bacteria	7623	Open in IMG/M
3300015371\|Ga0132258_13227132	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1124	Open in IMG/M
3300015374\|Ga0132255_101170564	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1157	Open in IMG/M
3300018081\|Ga0184625_10207998	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1026	Open in IMG/M
3300018431\|Ga0066655_10370910	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	942	Open in IMG/M
3300018431\|Ga0066655_10914658	All Organisms → cellular organisms → Archaea → Euryarchaeota	601	Open in IMG/M
3300018433\|Ga0066667_10105718	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1885	Open in IMG/M
3300018433\|Ga0066667_11795965	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	554	Open in IMG/M
3300018468\|Ga0066662_10010183	All Organisms → cellular organisms → Bacteria	4860	Open in IMG/M
3300018482\|Ga0066669_10244538	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1413	Open in IMG/M
3300019362\|Ga0173479_10352759	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	692	Open in IMG/M
3300019877\|Ga0193722_1003207	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	4004	Open in IMG/M
3300019881\|Ga0193707_1043992	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1436	Open in IMG/M
3300019886\|Ga0193727_1015306	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2843	Open in IMG/M
3300019999\|Ga0193718_1051553	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	895	Open in IMG/M
3300020034\|Ga0193753_10255391	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	776	Open in IMG/M
3300020140\|Ga0179590_1059768	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	994	Open in IMG/M
3300020199\|Ga0179592_10036996	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2209	Open in IMG/M
3300021415\|Ga0193694_1003066	All Organisms → cellular organisms → Bacteria → Proteobacteria	2306	Open in IMG/M
3300021415\|Ga0193694_1057811	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	527	Open in IMG/M
3300021418\|Ga0193695_1025134	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1264	Open in IMG/M
3300021475\|Ga0210392_10136682	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1659	Open in IMG/M
3300022694\|Ga0222623_10180349	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	821	Open in IMG/M
3300025898\|Ga0207692_10188076	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1207	Open in IMG/M
3300025905\|Ga0207685_10130894	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1113	Open in IMG/M
3300025930\|Ga0207701_10025272	All Organisms → cellular organisms → Bacteria	5655	Open in IMG/M
3300026312\|Ga0209153_1177194	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	768	Open in IMG/M
3300026325\|Ga0209152_10124970	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	979	Open in IMG/M
3300026332\|Ga0209803_1011391	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4681	Open in IMG/M
3300026374\|Ga0257146_1002745	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	2976	Open in IMG/M
3300026498\|Ga0257156_1028784	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1122	Open in IMG/M
3300026532\|Ga0209160_1057589	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2195	Open in IMG/M
3300026537\|Ga0209157_1209944	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	811	Open in IMG/M
3300027502\|Ga0209622_1042778	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	817	Open in IMG/M
3300027643\|Ga0209076_1110679	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	777	Open in IMG/M
3300027655\|Ga0209388_1066827	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1036	Open in IMG/M
3300027748\|Ga0209689_1023801	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3739	Open in IMG/M
3300028536\|Ga0137415_10027653	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	5592	Open in IMG/M
3300030916\|Ga0075386_11643330	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	669	Open in IMG/M
3300030945\|Ga0075373_11611109	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1453	Open in IMG/M
3300031231\|Ga0170824_121553038	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	958	Open in IMG/M
3300031469\|Ga0170819_13108291	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	607	Open in IMG/M
3300031474\|Ga0170818_111632343	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	531	Open in IMG/M
3300031720\|Ga0307469_12258287	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	530	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	90.20%
Host-Associated	Host-Associated	9.80%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	88.24%
Plants	Host-Associated → Plants	9.80%
Aquatic	Environmental → Aquatic	1.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	88.24%
Rhizosphere	Host-Associated → Plants → Rhizosphere	6.86%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.94%
Sediment	Environmental → Aquatic → Sediment	1.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	80.39%
Loam	Environmental → Terrestrial → Soil → Loam	7.84%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.88%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.96%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.98%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	42.16%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	28.43%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	8.82%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.86%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.88%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.96%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.98%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.98%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	24.51%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	15.69%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	12.75%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	8.82%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.90%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	2.94%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.94%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.96%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	1.96%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.96%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.96%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.98%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.98%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.98%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.98%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.98%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908021	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 Bulk Soil	Environmental	Open in IMG/M
2170459003	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect MP BIO 1O1 lysis 0-21cm	Environmental	Open in IMG/M
2170459007	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect in plug lysis (for fosmid construction) 10-21cm	Environmental	Open in IMG/M
2170459009	Grass soil microbial communities from Rothamsted Park, UK - July 2009 indirect DNA Tissue lysis 0-10cm	Environmental	Open in IMG/M
3300002557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm	Environmental	Open in IMG/M
3300002917	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cm	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005184	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120	Environmental	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300009092	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300019877	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m1	Environmental	Open in IMG/M
3300019881	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3c2	Environmental	Open in IMG/M
3300019886	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c2	Environmental	Open in IMG/M
3300019999	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a1	Environmental	Open in IMG/M
3300020034	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1c2	Environmental	Open in IMG/M
3300020140	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021415	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3s1	Environmental	Open in IMG/M
3300021418	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3s2	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300022694	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coex	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300026312	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120 (SPAdes)	Environmental	Open in IMG/M
3300026325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes)	Environmental	Open in IMG/M
3300026332	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138 (SPAdes)	Environmental	Open in IMG/M
3300026374	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-08-A	Environmental	Open in IMG/M
3300026498	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-49-A	Environmental	Open in IMG/M
3300026532	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153 (SPAdes)	Environmental	Open in IMG/M
3300026537	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135 (SPAdes)	Environmental	Open in IMG/M
3300027502	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027643	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 (SPAdes)	Environmental	Open in IMG/M
3300027655	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)	Environmental	Open in IMG/M
3300027748	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300030916	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA12 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030945	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA10 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
BSRL3_00269940	2124908021	Switchgrass Rhizosphere	MSDSFVEKLTFMVATVLWTRASKFDFPRRPATGWLQDVASREIVRAVLKRKDID
E4A_12279870	2170459003	Grass Soil	MSDSFVEKLTLIVATVLWGRASEFDFQRRPAAKWLQEIERTVLKPKGVDYNKEAL
L02_00563130	2170459007	Grass Soil	MSDSFVEKLTLIVATVLWARASKFDFQRRPAAKWLQEIERTVLKRKGVDYNKEAL
F47_00871310	2170459009	Grass Soil	KLSLIVATVLWAGACEFDFQRRPATKWLQEIERMVLKRKGVDYNKEAL
JGI25381J37097_10409101	3300002557	Grasslands Soil	MSDSLIEKLALIVATVLWARGSELDFPRRPATGWLQGVASHEIVTAVLKRKDLN*
JGI25616J43925_102705651	3300002917	Grasslands Soil	FVEKLTLIVATVLWARASEFDFQRRPATKWLQEIERTGLKRKGVDYNKEAL*
Ga0062594_1007404591	3300005093	Soil	MSDSFVEKLTLIVATVPWARASELDFPRRPATGWLQDVASHEIVTAVLERKGFD*
Ga0066679_104744552	3300005176	Soil	MSDSFVENLTLIVATVIWARASELDFPRRPATGWLQGVASHEIVTAVLKRKDFD*
Ga0066685_102755522	3300005180	Soil	MSDSLIEKLALIVATVLWARGSELDFPRRPATGWLQGVASHEIVTAVLKRK
Ga0066685_106942992	3300005180	Soil	MSDSFVEKLTLIVATALWARASELDFPRRPATGWLQDVASHEIVRAVLKRKDFD*
Ga0066671_100059331	3300005184	Soil	IEKLALIVATVLWARGSELDFPRRPATGWLQGVASHEIVTAVLKRKDLN*
Ga0066671_101586642	3300005184	Soil	MSDSFVEKLTLIVATVLWARASELDFPRRPATGWLQGVASHEIVTAVLKRKDFD*
Ga0065705_102347932	3300005294	Switchgrass Rhizosphere	MSDGFVEKLTLIVATVLWARASEFDFQRRPATKWLQEIERTVLKRKGIDYNKEAL*
Ga0070660_1004725612	3300005339	Corn Rhizosphere	MSDSFVEKLTLIVTMVLWACASEFDFPRRPATGWLQDVASREIVRAVLKRKDID*
Ga0070713_1009134801	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MSDSFVEKLTLIVATVLWAGACEFDFQRRPATKWLQEIERTVLKRKGVDYNKEAL*
Ga0070705_1001783312	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MSDSFVEKLTLIVATVLWARASELDFPRRPATGWLQDVASHEIVTAVLKRKRFD*
Ga0070700_1011852281	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MSDSFVEKLTLMAATVLWTRACKFDFPRRPATGWPQDVASREIVRA
Ga0066682_103397432	3300005450	Soil	LIVATALWARASELDFPRRPATGWLQDVASHEIVRAVLKRKDFD*
Ga0066681_109272632	3300005451	Soil	MSDSFVEKLTLIVAPVLWARASELDFPRRPATGRLQGLASHEIVTAVLKRKDFN*
Ga0066687_102137011	3300005454	Soil	LIVATVLWARGSELDFPRRPATGWLQGVASHEIVTAVLKRKDLN*
Ga0070678_1007145382	3300005456	Miscanthus Rhizosphere	MSDSFVEKLTLIVATVLWARASELDFPRRPATGWLQDVASHEIVTAVLKRK
Ga0066670_100723822	3300005560	Soil	MSESFVEKLTLIVATVLWARGSELDFPRRPATGWLQDVASHEIVTAVLKRKDFN*
Ga0070717_104740192	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MSDSFVEKLTLIAATVPWTRASEWDFPRRPATGWLQDVASQEIVTAVLKRKDFD*
Ga0066656_101286382	3300006034	Soil	MSDSFVEKLTLIVATVLWARASELDFPRSPATGWLQGVASHEIVTAVLKRKD
Ga0070715_102344982	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MSDSFVEKLTLIVATVLWARASEFDFPRRPATGWLQDVASREIVRAVLKRKDID*
Ga0099791_102679582	3300007255	Vadose Zone Soil	MRDSFVVKLAFVAATVLWVPACEFDFPKRPATGWLEHVASREIVRAILKRKDFDYNKEAL
Ga0099791_103004272	3300007255	Vadose Zone Soil	MSDRFVEKLTLIVATVLWACAYEFGFPRRPATGWLQDVASREIVRAVLKRKDID*
Ga0099793_100835292	3300007258	Vadose Zone Soil	MRDSFVEKLAFVVATVLWVPACEFDFPKRPATGRLEHVASREIGRAILNRKGFDYNKETL
Ga0105250_105807332	3300009092	Switchgrass Rhizosphere	MSHGFVEKLTLVVATVLWTRASKFDFPRRPATGWLQDVASREIVRAVLKRK
Ga0105247_106375552	3300009101	Switchgrass Rhizosphere	MSDSFVEKLTLVVATVLWTRASKFDFPRRPATGWLQDVASREIVRAVLKRKDID*
Ga0066709_1030604781	3300009137	Grasslands Soil	CMSDSFVEKLTLIVATALWARASELDFPRRPATGWLQDVASHEIVRAVLKRKDFD*
Ga0114129_100078822	3300009147	Populus Rhizosphere	MSDSFVEKLTLIVATVPCARASEWDFPRRPATGWLLDLASHQIVTAVLKRKRFDQNKEAL
Ga0075423_111702552	3300009162	Populus Rhizosphere	MSDSFVEKLTLIVATVPCARASEWDFPRRPATGWLLDLASHQIVTAVL
Ga0105249_109495432	3300009553	Switchgrass Rhizosphere	MSDSFVEKLTLIVATGLWARASELDFPRRPATGWLQDVASHEIVTAVLERKGFD*
Ga0099796_103888381	3300010159	Vadose Zone Soil	MSDSFVEKLTLIVATVLWTHASKFDFPRRPATGWLQDVASREIERAVLKRKDI
Ga0134062_106227712	3300010337	Grasslands Soil	MSDSLIEKLALIVATVLWARGSELDFPRRPATGWLQGVASHEIVTAVLKRKDL
Ga0134128_102154952	3300010373	Terrestrial Soil	MSDSFVEKLTLIVATVLWARASELDFPRRPATGWLQDVASHEIVTAVLKRKGFD*
Ga0134123_119249322	3300010403	Terrestrial Soil	HVLCCAAESWKGKCMSDSFVEKLTLMAATVLWTRASKFDFPRRPTTGWLQDVASREIVRAVLKRKDID*
Ga0137364_102679312	3300012198	Vadose Zone Soil	MSDSLIEKLALIVATVLWARGSELDFRRRPATGWLQGVASHEIVTAVLKRKDFN*
Ga0137383_100364965	3300012199	Vadose Zone Soil	MSDSFVKKLTLIVATVLRARASELDFRRRPATGWLQGVASHEIVTAVLKRKDFN*
Ga0137382_101789231	3300012200	Vadose Zone Soil	MSDSLIEKLTLIVATVLWARGSELDFPRRPATGWLQGVASHEIVTAVLKRKDLN*
Ga0137365_100085974	3300012201	Vadose Zone Soil	MSDSFVKKLTLIVATVLRARASELDFPRRPATGWLQDVASHEIVTAVLKRKDFD*
Ga0137399_100449812	3300012203	Vadose Zone Soil	MSDSFVEKLTLIVATVLWTRASKFDFPRRPATGWLQDVASGEMVRAVLKRKGID*
Ga0137399_103269222	3300012203	Vadose Zone Soil	MRDSFVEKLAFVAATVLWVPACEFDFPKRPATGWLEHVASREIGRAILNRKGFDYNKETL
Ga0137362_102441751	3300012205	Vadose Zone Soil	VLRCAAQTWKGKCMRDSFVEKLAFVAATVLWVPACEFDFPKRPATGWLEHVASREIGRAILNRKGFDYNKETL*
Ga0137362_108861032	3300012205	Vadose Zone Soil	MSDSFVEKLTLIVAAMLWARASELDFPRRPARGWPQNVASRELVTAVLKRKDFD*
Ga0137384_111750841	3300012357	Vadose Zone Soil	KGQCMSDSFVKKLTLIVATVLRARASELDFPRRPATGWLQDVASHEIVTAVLKRKDFD*
Ga0137361_106328052	3300012362	Vadose Zone Soil	MRDSFVEKLAFVAATVLWVPACEFDFPKRRATGWLEHVASREIGRAILNRKGFDYNKETL
Ga0137396_100252298	3300012918	Vadose Zone Soil	MRDSFVEKLTFVAATVLWVPACEFDFPKRPATGWLEHVASREIGR
Ga0137359_113430351	3300012923	Vadose Zone Soil	MSDSLIEKLALIVATVLWARGSELDFPRRPATGWLQGVASHEIVTAVLKRKDFD*
Ga0137419_103395782	3300012925	Vadose Zone Soil	MRDSFVEKLTFIAATVVWVPACEFDFPKRPATGWLQHVASREIGRAILNRKGFDYNKETL
Ga0137407_109420392	3300012930	Vadose Zone Soil	MSDSFVEKLTLIVAMVLWARASEFDFPRRPATKWLQEIERTVLKRKGVDYNKEAL*
Ga0137410_102929332	3300012944	Vadose Zone Soil	MSDGLVEELALIVATVLWARAYEFDFPRRPATGWLQDVASREIVRAVLKRNDIDQNKEVL
Ga0164300_103799952	3300012951	Soil	MSDSFVEKLTLIVTMVLWACASEFDFPRRPATGWLQDVASREIVKAGLKRKDID*
Ga0164303_101639222	3300012957	Soil	MSDSFVEKLTPIVAMVLWARASEFDFPRRPATGWLQDVASREIVRAILKRKDID*
Ga0164304_105587011	3300012986	Soil	MSDSFVEKLTLIVATLLWTRASKFDFPRRPATGWFQNVASREIVRAVLKRK
Ga0157372_108690882	3300013307	Corn Rhizosphere	MSDSFVEKLTLMAATVLWTRASKFDFPRRPATGWLQDVASREIVRAVLKRKDID*
Ga0173483_100241662	3300015077	Soil	MSHSFVEKLMLIVVTVLWARASELDFSRRPATGLLLDIASHEMVTAVLKRKDFD*
Ga0137412_100100094	3300015242	Vadose Zone Soil	MSDSFVEKLTLIVATVPWTRASKFDFPRRPATGWLQDVASREIVRAVLKRKDID*
Ga0132258_132271322	3300015371	Arabidopsis Rhizosphere	MSNSFVEKLTLIVATGLLTRASKFDFPRRPATGWLQDVASREIVRAVLKRKDID*
Ga0132255_1011705642	3300015374	Arabidopsis Rhizosphere	MSDSFVEKLTLIVATGLLTRASKFDFPRRPATGWLQDVASREIVRAVLKRKDID*
Ga0184625_102079982	3300018081	Groundwater Sediment	VEKLTLIVATVLWARASEFDFPRRPATGWPQDVASREIVRAVLKRKDID
Ga0066655_103709102	3300018431	Grasslands Soil	MSDSFVEKLTLIVATALWARASELDFPRRPATGWLQDVASHEIVRAVLKRKDFD
Ga0066655_109146582	3300018431	Grasslands Soil	MSESFVEKLTLIVATVLWARGSELDFPRRPATGWLQGVASHEIVTAVLKRKDLN
Ga0066667_101057182	3300018433	Grasslands Soil	MSDSFVEKLTLIVATVLWARGSELDFPRRPATGWLQGVASHEIVTAVLKRKDLN
Ga0066667_117959652	3300018433	Grasslands Soil	SWKGKCMSDSFVEKLTLIVATVLWARASELDFPRRPATGWLQGVASHEIVTAVLKRKDFD
Ga0066662_100101836	3300018468	Grasslands Soil	MSDSLIEKLALIVATVLWARGSELDFPRRPATGWLQGVASHEIVTAVLKRKDLN
Ga0066669_102445382	3300018482	Grasslands Soil	MSDSLIEKLALIVATVLWARASELDFPRRPATGWLQDVASHEIVTAVLKRKDFN
Ga0173479_103527591	3300019362	Soil	MSDSFVEKLTLIVATVLWARASEFDFQRRPATKWLQEIERTVLKRKGVDYNKEAL
Ga0193722_10032074	3300019877	Soil	MSDSFVEKFTLIVATVLWARADEFDFPRRPATGWPQNVASCEIVRAVLKRKGFDYNKEAL
Ga0193707_10439922	3300019881	Soil	MSDSFVEKLTLIVAMVLWARASEFDFPRRPATGWLQDVASREIVRAVLKRKDID
Ga0193727_10153062	3300019886	Soil	MSDSFVEKLTLIVAMVLWARLLSSIFREDRPQDVASREIVRAVLKRKDID
Ga0193718_10515532	3300019999	Soil	MSDSFVEKLTLIVATVLWTRASKFDFPRRPATGWPQDVASPEIVRAVLKRKDID
Ga0193753_102553911	3300020034	Soil	DSFVEKLIVATVLWVRASEFDFQRRPATKWLQEIERAVLKRKGVDYNEEAL
Ga0179590_10597682	3300020140	Vadose Zone Soil	MSDSFVEKLTLIVATMLWARASEFDFPRRPATGWLQDAASREIVRALLKRKDFG
Ga0179592_100369962	3300020199	Vadose Zone Soil	MSDSFVEKLMLIVATVLWTRASKFDFPRRPATGWLQDVASREIVRAVLKRKDID
Ga0193694_10030664	3300021415	Soil	DSFVENLTLIVATVLWTRASKFDFPRRPATGWLQDVASREIVRAVLKRKDID
Ga0193694_10578111	3300021415	Soil	MSDSFVEKLTLIVATVLWTRASKFDFPRRPATGWLQDVASREIVRAVLKR
Ga0193695_10251342	3300021418	Soil	MSDSFVEKLALIVGTVLWARAYEFDFPRRPATEWLQDVASREIVREVLKRKGFDYNKEAL
Ga0210392_101366822	3300021475	Soil	MSDSFVEKLTLIVATLLWTRASEFDFPRRPATGWFQDVASREIVRAVLKRKDIDYNKEAL
Ga0222623_101803492	3300022694	Groundwater Sediment	MSDSFVEELTLIVATVLWARAYEFDFPRRPATGWLQDVARREIVRAVLKRKGFDYNKEAL
Ga0207692_101880762	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MSDSFVEKLTLIVTMVLWACASEFDFPRRPATGWLQDVASREIVRAVLKRKDID
Ga0207685_101308942	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	MSDSFVEKLTLIVATVLWARASEFDFPRRPATGWLQDVASREIVRAVLKRKDID
Ga0207701_100252722	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MSDSFVEKLTLIVATVPWARASELDFPRRPATRWLQDVASHEIVTAVLKRKGFD
Ga0209153_11771942	3300026312	Soil	MSDSFVEKLTLIVATVLWARASELDFPRRPATGWLQGVASHEIVTAVLKRKDFD
Ga0209152_101249702	3300026325	Soil	MSDSLIEKLALIVATVLWARGSELDFPRRPATGWLQGVASHEIVTAVLKRKDFN
Ga0209803_10113914	3300026332	Soil	MSDSLIEKLALIVATVLWARGSELDFPRRPATGWLQGVASHEIVTAVLKRKDFD
Ga0257146_10027452	3300026374	Soil	MSDSFVEKLTLIVATVLSARASEFDFQRRPATKWLQEIERAVLKRKGVDYNEEAL
Ga0257156_10287842	3300026498	Soil	MSDSFVEKLTLIVAMVLWARACEFDFREDRPQDVASREIVRAVLKRKDID
Ga0209160_10575891	3300026532	Soil	WARGSELDFPRRPATGWLQGVASHEIVTAVLKRKDLN
Ga0209157_12099442	3300026537	Soil	HILRCAAQSWKGKCMSDSLIEKLALIVATVLWARGSELDFPRRPATGWLQGVASHEIVTAVLKRKDLN
Ga0209622_10427782	3300027502	Forest Soil	MSDSFVEKLRLIVVTVLWARTSELDFPRRPATGSPQGVASHEMVTAVLKRKDLD
Ga0209076_11106792	3300027643	Vadose Zone Soil	MRDSFVEKLAFVVATVLWVPACEFDFPKRPATGRLEHVASREIGRAILNRKGFDYN
Ga0209388_10668272	3300027655	Vadose Zone Soil	MSDRFVEKLTLIVATVLWACAYEFGFPRRPATGWLQDVASREIVRAVLKRKG
Ga0209689_10238014	3300027748	Soil	MSDSLIEKLALIVATVLWARASELDFPRRPATGWLQGVASHEIVTAVLKRKDFD
Ga0137415_100276534	3300028536	Vadose Zone Soil	MSDSFVEKLTLIVATVLWTRASKFDFPRRPATGWLQDVASREIVRAVLKRKDID
Ga0075386_116433302	3300030916	Soil	TVLWARASKFDFQRRPAAKWLQEIERTVLKRKGVDYNKEAL
Ga0075373_116111092	3300030945	Soil	MSDTFVEKLTLIVATVLWARVCEFAFARRPATGWLQDAASREIVRAVLKRKDFGYNKEAL
Ga0170824_1215530382	3300031231	Forest Soil	MSDTFVEKLTLIVATVLWARVCEFDFPRRPATGWLQDAASREIVRAVLKRKDFGYNKEAL
Ga0170819_131082912	3300031469	Forest Soil	MSDSFVEKLTLIVATVLWARASEFDFQRRPATKWLQEIERTVLKRKRVDYNKEAL
Ga0170818_1116323432	3300031474	Forest Soil	MSDSFVEKLTLIVATVLWARASKFDFQRRPAAKWLQEIERTVLKRKRVDYNKEAL
Ga0307469_122582871	3300031720	Hardwood Forest Soil	SDSFVEKLTLIVATGLWARASELDFPRRPATGWLQDVASHEIVTAVLKRKRFD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F101971

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences