Metagenome / Metatranscriptome Family F101959

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F101959
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	56 residues
Representative Sequence	VCPPELEPAREAIDDPEPYVPGSFDDVVLAYDLGWLSDADYDVLAVAADGLPGS
Number of Associated Samples	90
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	82.35 %
% of genes from short scaffolds (< 2000 bps)	75.49 %
Associated GOLD sequencing projects	87
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (50.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (17.647 % of family members)
Environment Ontology (ENVO)	Unclassified (18.627 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (47.059 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 37.04% β-sheet: 0.00% Coil/Unstructured: 62.96%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF01418	HTH_6	38.24
PF03795	YCII	4.90
PF13580	SIS_2	4.90
PF00196	GerE	1.96
PF00144	Beta-lactamase	1.96
PF01061	ABC2_membrane	0.98
PF01126	Heme_oxygenase	0.98
PF00561	Abhydrolase_1	0.98
PF01556	DnaJ_C	0.98
PF09992	NAGPA	0.98
PF01869	BcrAD_BadFG	0.98
PF13271	DUF4062	0.98
PF05057	DUF676	0.98
PF12680	SnoaL_2	0.98
PF02518	HATPase_c	0.98
PF00512	HisKA	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG1737	DNA-binding transcriptional regulator, MurR/RpiR family, contains HTH and SIS domains	Transcription [K]	38.24
COG2350	YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis	Secondary metabolites biosynthesis, transport and catabolism [Q]	4.90
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	1.96
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	1.96
COG2367	Beta-lactamase class A	Defense mechanisms [V]	1.96
COG0484	DnaJ-class molecular chaperone with C-terminal Zn finger domain	Posttranslational modification, protein turnover, chaperones [O]	0.98
COG3230	Heme oxygenase	Inorganic ion transport and metabolism [P]	0.98
COG5398	Heme oxygenase	Coenzyme transport and metabolism [H]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	50.00 %
Unclassified	root	N/A	50.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	50.00 %
Unclassified	root	N/A	50.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	50.00 %
Unclassified	root	N/A	50.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.00 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	30.39 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.94 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.00 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	30.39 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.94 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.00 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	18.63 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.94 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.00 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	11.76 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.94 %
Catenulisporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales	1.96 %
Cryptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Cryptosporangiales	0.98 %
Chitinophagia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia	0.98 %
Nakamurellales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.00 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	11.76 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.94 %
Actinospicaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Actinospicaceae	1.96 %
Chitinophagales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales	0.98 %
Cryptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Cryptosporangiales → Cryptosporangiaceae	0.98 %
Nakamurellaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.00 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	10.78 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.94 %
Actinospica	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Actinospicaceae → Actinospica	1.96 %
Chitinophagaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae	0.98 %
Cryptosporangium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Cryptosporangiales → Cryptosporangiaceae → Cryptosporangium	0.98 %
Streptacidiphilus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptacidiphilus	0.98 %
Nakamurella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.00 %
unclassified Streptomyces	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces	10.78 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.94 %
Actinospica durhamensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Actinospicaceae → Actinospica → Actinospica durhamensis	1.96 %
Cryptosporangium aurantiacum	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Cryptosporangiales → Cryptosporangiaceae → Cryptosporangium → Cryptosporangium aurantiacum	0.98 %
Nakamurella multipartita	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella → Nakamurella multipartita	0.98 %
Chitinophaga	genus	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → Chitinophaga	0.98 %
Streptacidiphilus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptacidiphilus	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.00 %
Streptomyces sp. TLI_171	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. TLI_171	10.78 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.94 %
Actinospica durhamensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Actinospicaceae → Actinospica → Actinospica durhamensis	1.96 %
Chitinophaga niastensis	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → Chitinophaga → Chitinophaga niastensis	0.98 %
Cryptosporangium aurantiacum	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Cryptosporangiales → Cryptosporangiaceae → Cryptosporangium → Cryptosporangium aurantiacum	0.98 %
Nakamurella multipartita	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella → Nakamurella multipartita	0.98 %
Streptacidiphilus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptacidiphilus	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000567\|JGI12270J11330_10012735	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella → Nakamurella multipartita	5503	Open in IMG/M
3300005168\|Ga0066809_10007987	All Organisms → cellular organisms → Bacteria	1925	Open in IMG/M
3300005435\|Ga0070714_101763538	Not Available	604	Open in IMG/M
3300005440\|Ga0070705_101798914	Not Available	519	Open in IMG/M
3300005444\|Ga0070694_100160186	All Organisms → cellular organisms → Bacteria	1651	Open in IMG/M
3300005471\|Ga0070698_101115019	All Organisms → cellular organisms → Bacteria	738	Open in IMG/M
3300005543\|Ga0070672_100682584	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. TLI_171	899	Open in IMG/M
3300005545\|Ga0070695_100182089	Not Available	1489	Open in IMG/M
3300005548\|Ga0070665_102580047	Not Available	509	Open in IMG/M
3300005844\|Ga0068862_100337259	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1395	Open in IMG/M
3300006163\|Ga0070715_10385761	All Organisms → cellular organisms → Bacteria	774	Open in IMG/M
3300006573\|Ga0074055_11845658	Not Available	523	Open in IMG/M
3300006579\|Ga0074054_11749829	Not Available	564	Open in IMG/M
3300006806\|Ga0079220_11070085	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. TLI_171	649	Open in IMG/M
3300006806\|Ga0079220_12061959	Not Available	510	Open in IMG/M
3300006854\|Ga0075425_103133775	Not Available	503	Open in IMG/M
3300006904\|Ga0075424_101054388	All Organisms → cellular organisms → Bacteria	866	Open in IMG/M
3300007258\|Ga0099793_10656871	Not Available	528	Open in IMG/M
3300009012\|Ga0066710_101120413	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → Chitinophaga → Chitinophaga niastensis	1217	Open in IMG/M
3300009094\|Ga0111539_13286172	Not Available	521	Open in IMG/M
3300009520\|Ga0116214_1082267	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Cryptosporangiales → Cryptosporangiaceae → Cryptosporangium → Cryptosporangium aurantiacum	1179	Open in IMG/M
3300009520\|Ga0116214_1147446	Not Available	875	Open in IMG/M
3300009698\|Ga0116216_10390640	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	845	Open in IMG/M
3300010359\|Ga0126376_11636964	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. TLI_171	677	Open in IMG/M
3300010360\|Ga0126372_10389087	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1268	Open in IMG/M
3300010379\|Ga0136449_102653611	Not Available	713	Open in IMG/M
3300010379\|Ga0136449_103578249	Not Available	590	Open in IMG/M
3300010379\|Ga0136449_103689533	Not Available	579	Open in IMG/M
3300010399\|Ga0134127_10240204	All Organisms → cellular organisms → Bacteria	1709	Open in IMG/M
3300012211\|Ga0137377_11579511	Not Available	580	Open in IMG/M
3300012356\|Ga0137371_10704009	All Organisms → cellular organisms → Bacteria	772	Open in IMG/M
3300012473\|Ga0157340_1000625	Not Available	1418	Open in IMG/M
3300012481\|Ga0157320_1010110	All Organisms → cellular organisms → Bacteria	723	Open in IMG/M
3300012490\|Ga0157322_1008588	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. TLI_171	784	Open in IMG/M
3300012513\|Ga0157326_1032458	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. TLI_171	698	Open in IMG/M
3300013105\|Ga0157369_11616146	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. TLI_171	659	Open in IMG/M
3300014497\|Ga0182008_10250836	Not Available	913	Open in IMG/M
3300015089\|Ga0167643_1071787	Not Available	506	Open in IMG/M
3300017924\|Ga0187820_1191543	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. TLI_171	634	Open in IMG/M
3300018038\|Ga0187855_10840421	Not Available	536	Open in IMG/M
3300018046\|Ga0187851_10059612	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2462	Open in IMG/M
3300019887\|Ga0193729_1070667	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1378	Open in IMG/M
3300020581\|Ga0210399_10463827	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1054	Open in IMG/M
3300020582\|Ga0210395_10825999	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. TLI_171	690	Open in IMG/M
3300021404\|Ga0210389_10143591	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1849	Open in IMG/M
3300021433\|Ga0210391_10854725	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Actinospicaceae → Actinospica → Actinospica durhamensis	710	Open in IMG/M
3300021559\|Ga0210409_10426546	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1184	Open in IMG/M
3300021560\|Ga0126371_10184318	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2174	Open in IMG/M
3300021560\|Ga0126371_12146274	All Organisms → cellular organisms → Bacteria	673	Open in IMG/M
3300024222\|Ga0247691_1022646	Not Available	980	Open in IMG/M
3300025633\|Ga0208480_1046876	Not Available	1141	Open in IMG/M
3300025898\|Ga0207692_10150554	Not Available	1332	Open in IMG/M
3300025910\|Ga0207684_11052917	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. TLI_171	679	Open in IMG/M
3300025916\|Ga0207663_11239151	Not Available	601	Open in IMG/M
3300025960\|Ga0207651_10129859	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1927	Open in IMG/M
3300026507\|Ga0257165_1097838	Not Available	544	Open in IMG/M
3300026557\|Ga0179587_10916900	Not Available	577	Open in IMG/M
3300027096\|Ga0208099_1022437	All Organisms → cellular organisms → Bacteria	890	Open in IMG/M
3300027570\|Ga0208043_1090427	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Actinospicaceae → Actinospica → Actinospica durhamensis	838	Open in IMG/M
3300027812\|Ga0209656_10074597	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1840	Open in IMG/M
3300027903\|Ga0209488_10041285	All Organisms → cellular organisms → Bacteria	3381	Open in IMG/M
3300027905\|Ga0209415_11145120	Not Available	502	Open in IMG/M
3300028742\|Ga0302220_10273203	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	618	Open in IMG/M
3300028875\|Ga0307289_10101005	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1177	Open in IMG/M
3300028879\|Ga0302229_10014459	All Organisms → cellular organisms → Bacteria	4590	Open in IMG/M
3300028879\|Ga0302229_10267021	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptacidiphilus	772	Open in IMG/M
3300029701\|Ga0222748_1131028	Not Available	514	Open in IMG/M
3300029943\|Ga0311340_11384106	Not Available	556	Open in IMG/M
3300030013\|Ga0302178_10475423	Not Available	547	Open in IMG/M
3300030056\|Ga0302181_10410725	Not Available	582	Open in IMG/M
3300030618\|Ga0311354_11849305	Not Available	523	Open in IMG/M
3300031544\|Ga0318534_10774736	Not Available	539	Open in IMG/M
3300031549\|Ga0318571_10215961	All Organisms → cellular organisms → Bacteria	692	Open in IMG/M
3300031668\|Ga0318542_10313230	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	804	Open in IMG/M
3300031708\|Ga0310686_104960134	All Organisms → cellular organisms → Bacteria	2379	Open in IMG/M
3300031736\|Ga0318501_10096074	All Organisms → cellular organisms → Bacteria	1471	Open in IMG/M
3300031747\|Ga0318502_10492172	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	734	Open in IMG/M
3300031770\|Ga0318521_10741231	Not Available	597	Open in IMG/M
3300031778\|Ga0318498_10027038	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2467	Open in IMG/M
3300032001\|Ga0306922_10238556	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1954	Open in IMG/M
3300032064\|Ga0318510_10332509	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. TLI_171	638	Open in IMG/M
3300032089\|Ga0318525_10294800	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. TLI_171	833	Open in IMG/M
3300032160\|Ga0311301_11536376	All Organisms → cellular organisms → Bacteria	816	Open in IMG/M
3300032829\|Ga0335070_10782010	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	888	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	87.25%
Host-Associated	Host-Associated	12.75%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	83.33%
Plants	Host-Associated → Plants	12.75%
Aquatic	Environmental → Aquatic	3.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	73.53%
Peat	Environmental → Terrestrial → Peat	9.80%
Rhizosphere	Host-Associated → Plants → Rhizosphere	7.84%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.90%
Freshwater	Environmental → Aquatic → Freshwater	3.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	58.82%
Loam	Environmental → Terrestrial → Soil → Loam	11.76%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	9.80%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.90%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	3.92%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.94%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	33.33%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	20.59%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	10.78%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	9.80%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.90%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	2.94%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.94%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.94%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.98%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.98%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.98%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	17.65%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	13.73%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	9.80%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	8.82%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.86%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.90%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	3.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.94%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.94%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.94%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.94%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	1.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.96%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.98%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.98%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.98%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.98%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.98%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.98%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.98%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.98%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000567	Peat soil microbial communities from Weissenstadt, Germany - SII-2010	Environmental	Open in IMG/M
3300005168	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006573	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006579	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009520	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG	Environmental	Open in IMG/M
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012473	Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.12.yng.090610	Host-Associated	Open in IMG/M
3300012481	Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.1.yng.040610	Host-Associated	Open in IMG/M
3300012490	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.4.old.040610	Host-Associated	Open in IMG/M
3300012513	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.2.old.250510	Host-Associated	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated	Open in IMG/M
3300015089	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G8A, Adjacent to main proglacial river, end of transect (Watson river))	Environmental	Open in IMG/M
3300017924	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5	Environmental	Open in IMG/M
3300018038	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10	Environmental	Open in IMG/M
3300018046	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_10	Environmental	Open in IMG/M
3300019887	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300024222	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK32	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300025633	Arctic peat soil from Barrow, Alaska - NGEE Surface sample F53-1 shallow-092012 (SPAdes)	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026507	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-12-B	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027096	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF043 (SPAdes)	Environmental	Open in IMG/M
3300027570	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300028742	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E1_3	Environmental	Open in IMG/M
3300028875	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143	Environmental	Open in IMG/M
3300028879	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_3	Environmental	Open in IMG/M
3300029701	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300029943	I_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300029951	III_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300030013	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_3	Environmental	Open in IMG/M
3300030056	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_3	Environmental	Open in IMG/M
3300030494	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG (v2)	Environmental	Open in IMG/M
3300030618	II_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300031028	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_2	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032089	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12270J11330_100127351	3300000567	Peatlands Soil	RRWPQVPDVCPPELEQARDAIDDPEPYVPGSFDDVVLAYDLGWLSDADYDILAAAADGLPGA*
Ga0066809_100079873	3300005168	Soil	RRWPRVPDVCPPELEPAREAIDDPEPYVPGSFDDVVLAYDLGWLSDADYDVLAVAADGLPGP*
Ga0070683_1019553612	3300005329	Corn Rhizosphere	PELEAAREAIDDPEPYVPGSFDDVVLAYDLGWLSAADFDILAVAAG*
Ga0070714_1017635382	3300005435	Agricultural Soil	VPDVCPPELEPAREAIDDPEPYVPGSFDDVVLAYDLGWLSDADYDVLAVAANGLPGS*
Ga0070713_1022215331	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	AREAIDDPEPYVPGSFDDVVLAYDLGWLSAADFDILAIAAG*
Ga0070705_1017989141	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	RARRWPRVPDVCPPELEPAREAIDDPEPYVPGSFDDVVLAYDLGWLSDVDYDVLAIAADVVPGS*
Ga0070694_1001601863	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	EFRARRWPRVPDVCPPELEPAREAIDDPEPYVPGSFDDVVLAYDLGWLSDADYDVLAIAADVVPGS*
Ga0070698_1011150192	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	ELEPAREAIDDPEPYVPGSFDDVVLAYDLGWLSDADYDVLAVAADGLPGS*
Ga0070672_1006825843	3300005543	Miscanthus Rhizosphere	FRARRWPRVPDVCPPELEPAREAIDDPEPYVPGSFDDVVLAYDLGWLSDADYDVLAIAADVVPGS*
Ga0070695_1001820892	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	PRVPDVCPPELEPAREAIDDPEPYVPGSFDDVVLAYDLGWLSDADYDVLAIAADVVPGS*
Ga0070665_1025800471	3300005548	Switchgrass Rhizosphere	FRARRWPRIPDVCPPELEAAREAIDDPEPYVPGSFDDVVLAYDLGWLSAADFDILAVAAG
Ga0068862_1003372593	3300005844	Switchgrass Rhizosphere	EPAREAIDDPEPYVPGSFDDVVLAYDLGWLSDADYDVLAIAADVVPGS*
Ga0070715_103857612	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	LEFRARRWPRVPDVCPPELEPAREAIDDPEPYVPGSFDDVLLAYDLGWLSDADYDVLAVAADGLPGS*
Ga0074055_118456581	3300006573	Soil	AREAIDDPEPYVPGSFDDVVLAYDLGWLSDADYDVLAIAADGLPGS*
Ga0074054_117498292	3300006579	Soil	LEAAREAIDDPEPYVPGSFDDVVLAYDLGWLSDADYDVLAIAADGLPGS*
Ga0079220_101172422	3300006806	Agricultural Soil	ELEPAREAIDDPEPYVPGSFDDVVLAYDLGWLSAADFDILAVAAG*
Ga0079220_110700853	3300006806	Agricultural Soil	CPPELEPAREAIDDPEPYVPGSFDDVVLAYDLGWLSDADYDILVIAADVAPGS*
Ga0079220_120619591	3300006806	Agricultural Soil	CPPELEPAREAIDDPEPYVPGSFDDVVLAYDLGWLSDADYDVLAIAADVVPGS*
Ga0075425_1031337751	3300006854	Populus Rhizosphere	EFRARRWPRIPDVCPPELEAAREAIDDPEPYVPGSFDDVVLAYDLGWLSAADFDTLAIAAS*
Ga0075424_1010543881	3300006904	Populus Rhizosphere	WPRVPDVCPPELEPAREAIDDPEPYVPGSFDDAVLAYDLGWLSDADYDVLAIAADVVPGS
Ga0099793_106568712	3300007258	Vadose Zone Soil	CPPELEPARDAIDDPEPYVPGSFDDVVLAYDLGWLSDADYDVLAVAADGLPGS*
Ga0066710_1011204133	3300009012	Grasslands Soil	ARRWPRVPDVCPPELEPAREAIDDPEPYVPGSFDDVLLAYDLGWLSDADYDVLAVAADGLPGS
Ga0111539_132861721	3300009094	Populus Rhizosphere	PDVCPPELEPAREAIDDPEPYVPGSFDDVVLAYDLGWLSDADYDVLAVAADIVPGS*
Ga0116214_10822672	3300009520	Peatlands Soil	CLEFRARRWPQVPDVCPPELEQARDAIDDPEPYVPGSFDDVVLGYDLGWLSDADYDVLATAADGLPGA*
Ga0116214_11474461	3300009520	Peatlands Soil	QARDAIDDPEPYVPGSFDDVVLAYDLGWLSDADYDILAAAADGLPGA*
Ga0116216_103906402	3300009698	Peatlands Soil	WPQVPDVCPPELEQARDAIDDPEPYVPGSFDDVVLAYDLGWLSDADYDTLATAADGLSGA
Ga0116216_109349091	3300009698	Peatlands Soil	PQVPDVCPPELEQARDAIDDPEPYVPGSFDDVVLAYDLGWLSDGDYDVLATAADGLPGALALREAALDGGAGCR*
Ga0116217_101694381	3300009700	Peatlands Soil	QARDAIDDPEPYVPGSFDDVVLGYDLGWLSDADYDVLATAADGLPGA*
Ga0126376_116369642	3300010359	Tropical Forest Soil	ARDAIDDPEPYVPGSFDDVVLAYDLGWLSDADYDVLAVAADGLPGS*
Ga0126372_103890872	3300010360	Tropical Forest Soil	RARRWPRVPDVCPPELEPAREAIDDPEPYVPGSFDDVLLAYDLGWLSDADYDVLAIAAS*
Ga0136449_1026536112	3300010379	Peatlands Soil	FRARRWPQVPDVCPPELEQARDAIDDPEPYVPGSFDDVVLGYDLGWLSDADYDVLATAADSLPSA*
Ga0136449_1035782491	3300010379	Peatlands Soil	WPQVPDVCPPELEQARDAIDDPEPYVPGSFDDVVLGYDLGWLSDADYDVLATAADSLPGA
Ga0136449_1036895332	3300010379	Peatlands Soil	FRARRWPQVPDVCPPELEQARDAIDDPEPYVPGSFDDVVLGYDLGWLSDADYDVLAAAADSLPSA*
Ga0134127_102402043	3300010399	Terrestrial Soil	ELEPAREAIDDPEPYVPGSFDDVVLAYDLGWLSDADYDVLAIAADVVPGS*
Ga0137365_111771491	3300012201	Vadose Zone Soil	AREAIDDPEPYVPGSFDDVLLAYDLGWLPDADYDVLAVAADGLPGS*
Ga0137377_115795111	3300012211	Vadose Zone Soil	RVPDVCPPELEPARQAIDDPEPYVPGSFDDVVLAYDLGWLSDADYDVLAIAADGLPGS*
Ga0137371_107040091	3300012356	Vadose Zone Soil	RWPRVPDVCPPELEPAREAIDDPEPYVPGSFDDVVLAYDLGWLSDADYDVLAVAAHGLPGS*
Ga0157340_10006251	3300012473	Arabidopsis Rhizosphere	PRVPDVCPPELEPAREAIDDPEPYVPGSFDDVVLAYDLGWLSDADYDVLAIAADAVPGS*
Ga0157320_10101101	3300012481	Arabidopsis Rhizosphere	RRWPRVPDVCPPELEPAREAIDDPEPYVPGSFDDVVLAYDLGWLSDADYDVLAIAADAVPGS*
Ga0157322_10085882	3300012490	Arabidopsis Rhizosphere	RRWPRVPDVCPPELEPAREAIDDPEPYVPGSFDDVVLAYDLGWLSDADYDVLAIAADVVPGS*
Ga0157326_10324581	3300012513	Arabidopsis Rhizosphere	VCPPELEPAREAIDDPEPYVPGSFDDVVLAYDLGWLSDADYDVLAIAADAVPGS*
Ga0157369_116161462	3300013105	Corn Rhizosphere	CPPELEPAREAIDDPEPYVPGSFDDVLLAYDLGWLSDADYDVLAVAADGLPGS*
Ga0182008_102508362	3300014497	Rhizosphere	DVCPPELEPAREAIDDPEPYVPGSFDDVVLAYDLGWLSDADYDVLAIAADVVPGS*
Ga0167643_10717871	3300015089	Glacier Forefield Soil	PELEPAREAIDDPEPYVPGSIDDVVLAYDLGWLSDADFDVLAVAAEGLPGA*
Ga0187820_11915431	3300017924	Freshwater Sediment	PPELEPAREAIDDPEPYVPGSFDDVVLAYDLGWLSDADYDVLAIAADAVSGS
Ga0187855_108404211	3300018038	Peatland	PDVCPPELEQARDAIDDPEPYVPGSFDDVVLGYDLGWLSDADYDVLAAAADSLPSA
Ga0187851_100596124	3300018046	Peatland	WPRIPDVCPPELEAAREAIDDPEPYVPGSFDDVVMAYDLGWLSDADYDVLAVAADGLPGA
Ga0193729_10706672	3300019887	Soil	PELEPAREAIDDPEPYVPGSFDDVLLAYDLGWLSDADYDVLAVAADGLPGS
Ga0210399_104638272	3300020581	Soil	ELEPAREAIDDPEPYVPGSFDDVLLAYDLGWLSDADYEVLAVAAVGLPGS
Ga0210395_108259991	3300020582	Soil	PDVCPPELEPAREAIDDPEPYVPGSFDDVLLAYDLGWLSDADYDVLAVAADGLPGS
Ga0210389_101435911	3300021404	Soil	EFRARRWPRVPDVCPPELEPAREAIDDPEPYVPGSFDDVVLAYDLGWLSDADYDILAIAADAVPGS
Ga0210386_100905463	3300021406	Soil	AAIDDLEPYVPGSFDDVVLAYDLGWLSDEDYDILATAANGPGDT
Ga0210391_108547251	3300021433	Soil	PELEQARDAIDDPEPYVPGSFDDVVLAYDLGWLSDADYDVLASAADGLPGA
Ga0210409_104265461	3300021559	Soil	DVCPPELEPAREAIDDPEPYVPGSFDDVLLAYDLGWLSDADYDVLAVAADGLPGS
Ga0126371_101740754	3300021560	Tropical Forest Soil	EAIDDPEPYVPGSFDHVVLAYDLGWLSAADFDILAVAAG
Ga0126371_101843181	3300021560	Tropical Forest Soil	RARRWPRVLDVCPPELELAREAIDDPEPYVPGSFDDVVLAYDLGWLTDADYDILATAADGLPGA
Ga0126371_121462742	3300021560	Tropical Forest Soil	EFRARRWPQVLDVCPPELEQARAAIDDPEPYVPGSFDDVVLAYDLGWLSGADYDLLATAASG
Ga0247691_10226462	3300024222	Soil	DVCPPELEPAREAIDDPEPYVPGSFDDVVLAYDLGWLSDADYDVLAIAADVVPGS
Ga0179589_100636342	3300024288	Vadose Zone Soil	MEQARASIDDLEPYIPGSFDDVVLAYDLGQLTDGDYEPLATAAAAAR
Ga0208480_10468761	3300025633	Arctic Peat Soil	SWPAVPPVFPPALAGAPSAIDDPEPYVPGSFDDVVGAYDLGWITDPDYEALAAAAAPGTAGQPG
Ga0207692_101505542	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	VCPPELEPAREAIDDPEPYVPGSFDDVVLAYDLGWLSDADYDILVIAADVVPGS
Ga0207684_110529172	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	PRVPDVCPPELEPAREAIDDPEPYVPGSFDDVLLAYDLGWLSDADYDVLAVAADGLPGS
Ga0207663_112391511	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	RRWPRVPDVCPPELEPARDAIDDPEPYVPGSFDDVLLAYDLGWLSGTDYDVLAVAADGLPGS
Ga0207651_101298591	3300025960	Switchgrass Rhizosphere	RWPRVPDVCPPELEPAREAIDDPEPYVPGSFDDVVLAYDLGWLSDADYDVLAIAADVVPG
Ga0257165_10978382	3300026507	Soil	LEPARDAIDDPEPYVPGSFDDVVLAYDLGWLSDADYDVLAVAADILPGS
Ga0179587_109169001	3300026557	Vadose Zone Soil	LEPAREAIDDPEPYVPGSFDDVLLVYDLGWLSDADYDVLAVAADGLPGS
Ga0208099_10224371	3300027096	Forest Soil	VPDVCPPELEQARDAIDDPEPYVPGSFDDVVLAYDLGWLSDADYDVLASAADGLPGA
Ga0208043_10904271	3300027570	Peatlands Soil	WPQVPDVCPPELEQARDAIDDPEPYVPGSFDDVVLGYDLGWLSDADYDVLATAADGLPGA
Ga0209656_100745971	3300027812	Bog Forest Soil	RRWPQVPDVCPPELEQAREAIDDLEPYVPGSFDDVVLAYDLGWLSDADYEILATAADGLPGA
Ga0209488_100412851	3300027903	Vadose Zone Soil	PRVPDVCPPELEPARDAIDDPEPYVPGSFDDVVLAYDLGWLSDADYDVLAVAADILPGS
Ga0209415_111451202	3300027905	Peatlands Soil	CPPELEQARDAIDDPEPYVPGSFDDVVLAYDLGWLSDADYDILAAAADGLPGA
Ga0302220_102732032	3300028742	Palsa	RRWPAVPSACPPGMEQARAAIDDLEPYFPGSFDDVVLAYDLGWLTDEDYEVFAAAAGPPG
Ga0307289_101010051	3300028875	Soil	CPPELEPAREAIDDPEPYVPGSFDDVLLAYDLGWLSDADYDVLAIAAS
Ga0302229_100144598	3300028879	Palsa	ARRWPRVPDVCPPELEQARAAIDDPEPYVPGSFDDVVLAYDRGWLSDADYDVLSGAAADLPEGLAG
Ga0302229_102670211	3300028879	Palsa	QVPDVCPPELEQARAAIDDPEPYVPGSFDDVVLAYDRGWLSDADYDVLSGAAADLPEGLA
Ga0222748_11310282	3300029701	Soil	EFRARRWPRVPDVCPPELEQARDAIDDPEPYVPGSFDDVVLAYDLGWLSDADYDVLASAADGLPGA
Ga0311340_113841061	3300029943	Palsa	EFRARRWPRVPDVCPPELEQARAAIDDPEPYVPGSFDDVVLAYDRGWLSDADYDVLSGAAADLPEGLAG
Ga0311371_102419755	3300029951	Palsa	DVCPPELEQARAAIDDPEPYVPGSFDDVVLAYDRGWLSDADYDVLSGAAADLPEDLAG
Ga0302178_104754231	3300030013	Palsa	RRWPRVPDVCPPELEQARAAIDDPEPYVPGSFDDVVLAYDRGWLSDADYDVLSGAAADLPEGLAG
Ga0302181_104107252	3300030056	Palsa	RVPDVCPPELEQAREAIDDPEPYVPGSFDDVVLAYDRGWLSDADYDVLSGAAADLPEGLA
Ga0310037_100711951	3300030494	Peatlands Soil	QARDAIDDPEPYVPGSFDDVVLGYDLGWLSDADYDVLATAADSLPSA
Ga0311354_118493051	3300030618	Palsa	PRVPDVCPPELEQAREAIDDPEPYVPGSFDDVVLAYDRGWLSDADYDVLSGAAADLPEGLAG
Ga0302180_101396061	3300031028	Palsa	PELEQARAAIDDPEPYVPGSFDDVVLAYDRGWLSDADYDVLSGAAADLPG
Ga0302324_1023706612	3300031236	Palsa	ARRWPRVPDVCPPELEQARAAIDDPEPYVPGSFDDVVLAYDRGWLSDDDYDVLSGAAAADLPEGLAG
Ga0318534_107747362	3300031544	Soil	PDVCPPELEPAREAIDDPEPYVPGSFDDVVLAYDLGWLTGADYDILAIAADGLPGS
Ga0318571_102159611	3300031549	Soil	PELESAREAIDDPEPYVPGSFDDVVLAYDLGWLSDADYDVLAVAADGLPGS
Ga0318542_103132302	3300031668	Soil	PRVPDVCPPELEPAREAIDDPEPYVPGSFDDVVLAYDLGWLTGADYDILAIAADGLPGS
Ga0310686_1049601343	3300031708	Soil	PELEQARDAIDDPEPYVPGSFDDVVLGYDLGWLSDADYDVLATAADGLPGA
Ga0318501_100960743	3300031736	Soil	LEFRARRWPRVPDVCPPELESAREAIDDPEPYVPGSFDDVVLAYDLGWLSDADYDVLAVAADGLPGS
Ga0318502_104921723	3300031747	Soil	VPDVCPPELESAREAIDDPEPYVPGSFDDVVLAYDLGWLSDADYDVLAVAADGLPGS
Ga0318521_107412312	3300031770	Soil	CPPELESAREAIDDPEPYVPGSFDDVVLAYDLGWLSDADYDVLAVAADGLPGS
Ga0318498_100270381	3300031778	Soil	FRARRWPRVPDVCPPELESAREAIDDPEPYVPGSFDDVVLAYDLGWLSDADYDVLAVAADGLPGS
Ga0306922_102385565	3300032001	Soil	ARRWPRVPDVCPPELEPAREAIDDPEPYVPGSFDDVVLAYDLGWLTGADYDILAIAADGLPGS
Ga0318510_103325092	3300032064	Soil	LEPAREAIDDPEPYVPGSFDDVVLAYDLGWLTDADYDILATAADGLPGA
Ga0318525_102948002	3300032089	Soil	RRWPRVPDVCPPELEQARAAIDDPEPYVPGSFDDVVLAYDLGWLSGADYDVLAVAANGPGQERAG
Ga0311301_101479136	3300032160	Peatlands Soil	EQARDAIDDPEPYVPGSFDDVVLGYDLGWLSDADYDVLATAADGLPGA
Ga0311301_115363761	3300032160	Peatlands Soil	FRARRWPQVPDVCPPELEQARDAIDDPEPYVPGSFDDVVLGYDLGWLSDADYDVLATAADSLPSA
Ga0306920_1039339432	3300032261	Soil	LEQARAAIDDPEPYVPGSFDDVVLAYDLGWLSGADYDILAVAAAGPG
Ga0306920_1041364521	3300032261	Soil	AREAIDDPEPYVPGSFDDVVLAYDLGWLTGADYDILAIAADGLPGS
Ga0335082_100488176	3300032782	Soil	LAREAIDDPEPYVPGSFDDVVLAYDLGWLSAADYDVLAVAADGLPGS
Ga0335082_114397891	3300032782	Soil	DPEPYVPGSFDDVVLAYDLGWLSAADFDTLAIAAS
Ga0335070_107820103	3300032829	Soil	VCPPELEPAREAIDDPEPYVPGSFDDVVLAYDLGWLSDADYDVLAVAADGLPGS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F101959

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences