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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F101936 |
| Family Type | Metagenome |
| Number of Sequences | 102 |
| Average Sequence Length | 68 residues |
| Representative Sequence | MDDDRDRAAAGSNDGAESSRVAPPACAVDPDIECPVCAARGRRVRMHPVKAHYQCPDCHYFDSCCM |
| Number of Associated Samples | 91 |
| Number of Associated Scaffolds | 102 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | No |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 45.45 % |
| % of genes near scaffold ends (potentially truncated) | 25.49 % |
| % of genes from short scaffolds (< 2000 bps) | 80.39 % |
| Associated GOLD sequencing projects | 83 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.39 |
| Hidden Markov Model |
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| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (78.431 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (9.804 % of family members) |
| Environment Ontology (ENVO) | Unclassified (35.294 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere (52.941 % of family members) |
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| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 6.38% β-sheet: 10.64% Coil/Unstructured: 82.98% | Feature Viewer |
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| Structure Viewer | |
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| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.39 |
| Powered by PDBe Molstar | |
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| Pfam ID | Name | % Frequency in 102 Family Scaffolds |
|---|---|---|
| PF04972 | BON | 29.41 |
| PF04116 | FA_hydroxylase | 1.96 |
| PF00749 | tRNA-synt_1c | 1.96 |
| PF00255 | GSHPx | 0.98 |
| PF03330 | DPBB_1 | 0.98 |
| PF13676 | TIR_2 | 0.98 |
| PF03950 | tRNA-synt_1c_C | 0.98 |
| PF12680 | SnoaL_2 | 0.98 |
| PF03576 | Peptidase_S58 | 0.98 |
| PF02424 | ApbE | 0.98 |
| PF00069 | Pkinase | 0.98 |
| COG ID | Name | Functional Category | % Frequency in 102 Family Scaffolds |
|---|---|---|---|
| COG0515 | Serine/threonine protein kinase | Signal transduction mechanisms [T] | 3.92 |
| COG0008 | Glutamyl- or glutaminyl-tRNA synthetase | Translation, ribosomal structure and biogenesis [J] | 2.94 |
| COG3000 | Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily | Lipid transport and metabolism [I] | 1.96 |
| COG3191 | L-aminopeptidase/D-esterase | Amino acid transport and metabolism [E] | 1.96 |
| COG0386 | Thioredoxin/glutathione peroxidase BtuE, reduces lipid peroxides | Defense mechanisms [V] | 0.98 |
| COG1477 | FAD:protein FMN transferase ApbE | Posttranslational modification, protein turnover, chaperones [O] | 0.98 |
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| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 78.43 % |
| All Organisms | root | All Organisms | 21.57 % |
| Visualization |
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| Habitat | Taxonomy | Distribution |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 9.80% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil | 8.82% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere | 6.86% |
| Soil | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil | 4.90% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil | 4.90% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 4.90% |
| Switchgrass Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere | 4.90% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere | 4.90% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil | 3.92% |
| Corn Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere | 3.92% |
| Groundwater Sediment | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment | 2.94% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil | 2.94% |
| Arabidopsis Rhizosphere | Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere | 2.94% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere | 2.94% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere | 2.94% |
| Populus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere | 2.94% |
| Groundwater Sediment | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment | 1.96% |
| Vadose Zone Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil | 1.96% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere | 1.96% |
| Arabidopsis Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere | 1.96% |
| Freshwater Sediment | Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment | 0.98% |
| Natural And Restored Wetlands | Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands | 0.98% |
| Sediment (Intertidal) | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal) | 0.98% |
| Terrestrial Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil | 0.98% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil | 0.98% |
| Agricultural Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil | 0.98% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere | 0.98% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil | 0.98% |
| Natural And Restored Wetlands | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands | 0.98% |
| Soil | Environmental → Terrestrial → Soil → Loam → Grasslands → Soil | 0.98% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere | 0.98% |
| Arabidopsis Thaliana Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere | 0.98% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere | 0.98% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere | 0.98% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere | 0.98% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere | 0.98% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere | 0.98% |
| Visualization |
|---|
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| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 3300004058 | Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqB_D1 | Environmental | Open in IMG/M |
| 3300004114 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5 | Environmental | Open in IMG/M |
| 3300004156 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1 | Environmental | Open in IMG/M |
| 3300004157 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2 | Environmental | Open in IMG/M |
| 3300004463 | Combined assembly of Arabidopsis thaliana microbial communities | Host-Associated | Open in IMG/M |
| 3300004479 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs | Environmental | Open in IMG/M |
| 3300004480 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4 | Environmental | Open in IMG/M |
| 3300004633 | Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio | Environmental | Open in IMG/M |
| 3300004643 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3 | Environmental | Open in IMG/M |
| 3300005093 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks | Environmental | Open in IMG/M |
| 3300005175 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122 | Environmental | Open in IMG/M |
| 3300005328 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG | Host-Associated | Open in IMG/M |
| 3300005329 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG | Environmental | Open in IMG/M |
| 3300005330 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG | Environmental | Open in IMG/M |
| 3300005332 | Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly) | Environmental | Open in IMG/M |
| 3300005340 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG | Environmental | Open in IMG/M |
| 3300005355 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG | Host-Associated | Open in IMG/M |
| 3300005356 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG | Host-Associated | Open in IMG/M |
| 3300005364 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG | Host-Associated | Open in IMG/M |
| 3300005441 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG | Environmental | Open in IMG/M |
| 3300005456 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG | Host-Associated | Open in IMG/M |
| 3300005459 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 | Host-Associated | Open in IMG/M |
| 3300005535 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG | Environmental | Open in IMG/M |
| 3300005543 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG | Host-Associated | Open in IMG/M |
| 3300005547 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG | Environmental | Open in IMG/M |
| 3300005615 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG | Environmental | Open in IMG/M |
| 3300005617 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 | Host-Associated | Open in IMG/M |
| 3300005836 | Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.42_YBB | Environmental | Open in IMG/M |
| 3300005841 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 | Host-Associated | Open in IMG/M |
| 3300006163 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG | Environmental | Open in IMG/M |
| 3300006954 | Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control | Environmental | Open in IMG/M |
| 3300009094 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) | Host-Associated | Open in IMG/M |
| 3300009100 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2 | Host-Associated | Open in IMG/M |
| 3300009101 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG | Host-Associated | Open in IMG/M |
| 3300009168 | Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015 | Environmental | Open in IMG/M |
| 3300009678 | Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT100 | Environmental | Open in IMG/M |
| 3300010362 | Tropical forest soil microbial communities from Panama - MetaG Plot_22 | Environmental | Open in IMG/M |
| 3300010366 | Tropical forest soil microbial communities from Panama - MetaG Plot_24 | Environmental | Open in IMG/M |
| 3300010398 | Tropical forest soil microbial communities from Panama - MetaG Plot_35 | Environmental | Open in IMG/M |
| 3300010401 | Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1 | Environmental | Open in IMG/M |
| 3300011420 | Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT199_2 | Environmental | Open in IMG/M |
| 3300011438 | Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT500_2 | Environmental | Open in IMG/M |
| 3300011445 | Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT700_2 | Environmental | Open in IMG/M |
| 3300012167 | Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT333_2 | Environmental | Open in IMG/M |
| 3300012354 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG | Environmental | Open in IMG/M |
| 3300012355 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG | Environmental | Open in IMG/M |
| 3300012891 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S148-409B-2 | Environmental | Open in IMG/M |
| 3300012901 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S119-311C-1 | Environmental | Open in IMG/M |
| 3300012957 | Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG | Environmental | Open in IMG/M |
| 3300012971 | Tropical forest soil microbial communities from Panama - MetaG Plot_1 | Environmental | Open in IMG/M |
| 3300012987 | Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG | Environmental | Open in IMG/M |
| 3300013306 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG | Host-Associated | Open in IMG/M |
| 3300014318 | Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqA_D1_rd | Environmental | Open in IMG/M |
| 3300014325 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG | Host-Associated | Open in IMG/M |
| 3300014968 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG | Host-Associated | Open in IMG/M |
| 3300014969 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG | Host-Associated | Open in IMG/M |
| 3300015371 | Combined assembly of cpr5 and col0 rhizosphere and soil | Host-Associated | Open in IMG/M |
| 3300015372 | Soil combined assembly | Host-Associated | Open in IMG/M |
| 3300017792 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG | Host-Associated | Open in IMG/M |
| 3300018055 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_90_coex | Environmental | Open in IMG/M |
| 3300018079 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b1 | Environmental | Open in IMG/M |
| 3300018083 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1 | Environmental | Open in IMG/M |
| 3300018469 | Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T | Environmental | Open in IMG/M |
| 3300018481 | Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T | Environmental | Open in IMG/M |
| 3300019362 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2) | Environmental | Open in IMG/M |
| 3300022756 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1 | Environmental | Open in IMG/M |
| 3300023069 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S049-202B-5 | Environmental | Open in IMG/M |
| 3300025926 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025930 | Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes) | Environmental | Open in IMG/M |
| 3300025931 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025936 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025938 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025940 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025944 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025986 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026023 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026075 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300026088 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026116 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300027874 | Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes) | Environmental | Open in IMG/M |
| 3300027907 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300028379 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300028802 | Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S | Environmental | Open in IMG/M |
| 3300028819 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153 | Environmental | Open in IMG/M |
| 3300031538 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1 | Environmental | Open in IMG/M |
| 3300031547 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4 | Environmental | Open in IMG/M |
| 3300031908 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1 | Environmental | Open in IMG/M |
| 3300032017 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D4 | Environmental | Open in IMG/M |
| 3300032075 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3 | Environmental | Open in IMG/M |
| 3300033407 | Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT140D175 | Environmental | Open in IMG/M |
| 3300033412 | Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC | Environmental | Open in IMG/M |
| Geographical Distribution | |
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| Protein ID | Sample Taxon ID | Habitat | Sequence |
| Ga0055498_101381792 | 3300004058 | Natural And Restored Wetlands | MADERAGAGAQPAADARSEEAPPACAVDPDIECPACAARGRRVRMHPVKAHYQCPECHYFDSCCM* |
| Ga0062593_1000100493 | 3300004114 | Soil | MDDDRNGAASNPSGVESPRTAAPACAVDPDIECPVCAARGLRVRMQPVKAHYQCPDCRYFDSCCM* |
| Ga0062589_1003328902 | 3300004156 | Soil | MDDDRDRGATNPSGGAEPSRTATPPACAVDPDIDCPACAARGRRVRMQPVKAHYQCPECRYFDSCCM* |
| Ga0062590_1006862703 | 3300004157 | Soil | MDDDSPRSPGSDAAASAPVQRSAPAACAVDPDVDCPVCAARGRRVRMLPVKAHYQCPECRYFDSCCM* |
| Ga0063356_1001068712 | 3300004463 | Arabidopsis Thaliana Rhizosphere | MDDDRDRGATNPSGGAEPSRTATPPACAVDPDIDCPACAARGRRVRMQPVKAHYQCPACRYFDSCCM* |
| Ga0062595_1003246662 | 3300004479 | Soil | ADALTVDAVSGPVALERLGAFRSSRYSRRMAEPRNRSQVEPSDAAEGAQVAAPPACAVDPDVDCPVCAARGRRVRMLPVKAHYQCPECRYFDSCCM* |
| Ga0062595_1013985062 | 3300004479 | Soil | MADERAGGAGTDATAEAVSPPACAVDPDLECPVCAARGQRVRMHPVKAHYQCPECHYFDSCCM* |
| Ga0062595_1014436961 | 3300004479 | Soil | MDDDRDRGATNPSGGAEPSRTATPPACAVDPDIDCPACAARGRRVRMQPVKAHYQCPDCHYFDSCCM* |
| Ga0062592_1004260783 | 3300004480 | Soil | MAEPRNRSQVEPSDAAEGAQVAAPPACAVDPDVDCPVCAARGRRVRMLPVKAHYQCPDCHYFDSCCM* |
| Ga0066395_100006539 | 3300004633 | Tropical Forest Soil | MTMTGAPVRCTPERMRTDDDRNRAERAPGGESGGSAATAPPACAVDPDTECPVCAARGNRVRMLPVKAHYQCPECRYFDSCCM* |
| Ga0062591_1013177972 | 3300004643 | Soil | MDDDRNRAAQPGGSAAGDGSGAGAPPACAVDPDVECPVCAARGRRVRMLPVKAHYQCPECRYFDSCCM* |
| Ga0062594_1001361463 | 3300005093 | Soil | MDDNRNRVAPSSSNGAEAHAAPPACAVDPDVDCPACAVRGRRVRMHPVKAHYQCPECHYFDSCCM* |
| Ga0066673_106318761 | 3300005175 | Soil | MADERAGASAEPKAEASGSADSPPACAVDPDLECPACAARGRRVRMHPVKAHYQCPECHYFDSCCM* |
| Ga0070676_100184022 | 3300005328 | Miscanthus Rhizosphere | MDDDRDRGATNNPSGGAEPSRTATPPACAVDPDIDCPACAARGRRVRMQPVKAHYQCPECRYFDSCCM* |
| Ga0070683_1000009087 | 3300005329 | Corn Rhizosphere | MDDNRNRIPTSSSDGAEAPRAVAPACAVDPDVDCPVCAARGRRVRMHPVKAHYQCPDCHYFDSCCM* |
| Ga0070690_1006207741 | 3300005330 | Switchgrass Rhizosphere | MADERAGRAADAAAEAASPPACAVDPDLECPVCAARGTRVRMHPVKAHYQCPECHYFDSCCM* |
| Ga0070690_1007638551 | 3300005330 | Switchgrass Rhizosphere | VNRMDDDRNGAASNPSGVEPPRTAAPACAVDPDIECPVCAARGLRVRMQPVKAHYQCPDCRYFDSCCM* |
| Ga0066388_1009168942 | 3300005332 | Tropical Forest Soil | MADERAGRTGADAAAETASPPACAVDPDLECPVCAARGNRVRMHPVKAHYQCPECHYFDSCCM* |
| Ga0070689_1011567792 | 3300005340 | Switchgrass Rhizosphere | MAERPNHPQAQPSDDADRAAAPPACAVDPDVECPVCAARGRRVRMLPVKAHYQCPDCHYFDSCCM* |
| Ga0070689_1017696152 | 3300005340 | Switchgrass Rhizosphere | VDGHAMDDDDSPRSPGSHPAPSDQARRSAPAACAVDPDVDCPVCAARGRRVRMLPVKAHYQCPECRYFDSCCM* |
| Ga0070671_1010486982 | 3300005355 | Switchgrass Rhizosphere | MDDDRNRAASGRGSAAGERPGSEAPPACAVDPDVECPVCAARGRRVRMLPVKAHYQCPDCHYFDSCCM* |
| Ga0070674_1012133782 | 3300005356 | Miscanthus Rhizosphere | LERLGASRSSRYSRRMAEPRNRSQVEPSDTAEGAQVAAPPACAVDPDVDCPVCAARGRRVRMLPVKAHYQCPECRYFDSCCM* |
| Ga0070673_1002509512 | 3300005364 | Switchgrass Rhizosphere | VDGHAMDDDDSPRSPGSHPAPSDQARRSAPAACAVDPDVDCPVCAARGRRVRMLPVKAHYQCPDCRYFDSCCM* |
| Ga0070673_1007110141 | 3300005364 | Switchgrass Rhizosphere | RSKFGILSGMADERAGRAADAAAEAASPPACAVDPDLECPVCAARGTRVRMHPVKAHYQCPECHYFDSCCM* |
| Ga0070700_1014104921 | 3300005441 | Corn, Switchgrass And Miscanthus Rhizosphere | MDDDSPRSPGSQPAPPDEARRSPPAACAVDPDIDCPVCAARGRRVRMLPVKAHYQCPECRYFDSCCM* |
| Ga0070678_1002586172 | 3300005456 | Miscanthus Rhizosphere | MDDDRNGAASNPSGVEPPRTAAPACAVDPDIECPVCAARGLRVRMQPVKAHYQCPDCRYFDSCCM* |
| Ga0068867_1022024141 | 3300005459 | Miscanthus Rhizosphere | VDGHAMDDDSPRSPGSQPAPPDEARRSPPAACAVDPDIDCPVCAARGRRVRMLPVKAHYQCPECRYFDSCCM* |
| Ga0070684_1005550362 | 3300005535 | Corn Rhizosphere | MDDERQDKTDGLGGVGAGKDPSTGGVPPACAIDPDTECPVCAARDQRVRMLPVKTHYQCPQCHYFDSCCM* |
| Ga0070672_1021075691 | 3300005543 | Miscanthus Rhizosphere | TRPPFRRRSKFGILSGMADERAGRAADAAAEAASPPACAVDPDLECPVCAARGTRVRMHPVKAHYQCPECHYFDSCCM* |
| Ga0070693_1008304912 | 3300005547 | Corn, Switchgrass And Miscanthus Rhizosphere | MDDDRNGAASNPSGVEPPRTAAPACAVDPDIECPVCAARGLRVRMQPVKAHYQCPECRYFDSCCM* |
| Ga0070702_1002313653 | 3300005615 | Corn, Switchgrass And Miscanthus Rhizosphere | MDDDRNGAASNPSGVEPPRTAAPACAVDPDIECPVCAARGLRVRMQPVKAHYQCP |
| Ga0068859_1027542072 | 3300005617 | Switchgrass Rhizosphere | MDDDRDRGATNNPSGGAEPSRTATPPACAVDPDIDCPACAARGRRVRMQPVKAHYQCPEC |
| Ga0074470_106995162 | 3300005836 | Sediment (Intertidal) | MDEDRNRPPAGPNSSADASRAAPPACAVDPDVECPVCAARGRRVRMHPVKAHYQCPDCHYFDSCCM* |
| Ga0068863_1014888662 | 3300005841 | Switchgrass Rhizosphere | MAERPNHPQAQPSDDAQRAAAPPACAVDPDVECPVCAARGRRVRMLPVKAHYQCPDCHYFDSCCM* |
| Ga0070715_107365612 | 3300006163 | Corn, Switchgrass And Miscanthus Rhizosphere | MEDERKRPSGDSSIAAGRGEAVTAPPACAVDPDTECPVCAARGERVRMQPVKAHYQCPQCHYFDSCCM* |
| Ga0079219_104935332 | 3300006954 | Agricultural Soil | MDDERQDKTDGLGGVGAGKDPSTGGVPPACAIDPDTECPVCAARGQRVRMLPVKAHYQCPQCHYFDSCCM* |
| Ga0111539_100349755 | 3300009094 | Populus Rhizosphere | VDEHAMDDDSPRSPDSQPAPSDQTQRSAPAACAVDPDVDCPVCAARGRRVRMLPVKAHYQCPECRYFDSCCM* |
| Ga0075418_131512132 | 3300009100 | Populus Rhizosphere | MDDDSRRSDGDARPTDQAPPACAVDPDLECPVCAARGRRVRMQPVKAHYQCPECRYFDSCCM* |
| Ga0105247_113881232 | 3300009101 | Switchgrass Rhizosphere | MDEDRNRAPAGPKPSADAPRAAPPACAVDPDVECPVCAARGRRVRMHPVKAHYQCPDCHYFDSCCM* |
| Ga0105104_108431831 | 3300009168 | Freshwater Sediment | MDDDSPRSPGSQPAPSDQTQRSAPAACAVDPDIDCPVCAARGRRVRMLPVKAHYQCPECRYFDSCCM* |
| Ga0105252_101360692 | 3300009678 | Soil | MDDDSPRSPGNDAAASDPARRSAPAACAVDPDVDCPVCAARGRRVRMLPVKAHYQCPECRYFDSCCM* |
| Ga0126377_135113731 | 3300010362 | Tropical Forest Soil | MDDDRSRAAGETSRAVERPAEAAAPPACAVDPDTECPVCAARGRRVRMLPVKAHYQCPECRYFDSCCM* |
| Ga0126379_118162422 | 3300010366 | Tropical Forest Soil | DRNRAERAPGGESGGSAATAPPACAVDPDTECPVCAARGNRVRMLPVKAHYQCPECRYFDSCCM* |
| Ga0126383_100050414 | 3300010398 | Tropical Forest Soil | MRTDDDRNRAERAPGGESGGSAATAPPACAVDPDTECPVCAARGNRVRMLPVKAHYQCPECRYFDSCCM* |
| Ga0134121_119511312 | 3300010401 | Terrestrial Soil | MEDDRSGASVKPSRTVDRTAEVPAPPACAVDPDTECPVCAARGERIRMLPVKAHYQCPVCHYFDSCCM* |
| Ga0137314_10560662 | 3300011420 | Soil | MDDDSPRSPGSDAAASDPARRSAPAACAVDPDVDCPVCAARGRRVRMLPVKAHYQCPECRYFDSCCM* |
| Ga0137451_12448901 | 3300011438 | Soil | RWLSRYSLTMADGRDHMKAERKDESTRAASPPACAIDPDVDCPVCAARGLRVRMQPVKAHYQCPDCHYFDSCCM* |
| Ga0137427_102415593 | 3300011445 | Soil | MDDDSPRSPGGDAAPTDEARPSAPAACAVDPDVDCPVCAARGRRVRMLPVKAHYQCPECRYFDSCCM* |
| Ga0137319_10086383 | 3300012167 | Soil | MDDDSPRSPGSDAAASAPARRSAPAACAVDPDVDCPVCAARGRRVRMLPVKAHYQCPECRYFDSCCM* |
| Ga0137366_104570053 | 3300012354 | Vadose Zone Soil | MDDDRNRAAAGPNDDGDASDAAPPACAVDPDIDCPACAARGRRVRMHPVKAHYQCPDCHYFDSCCM* |
| Ga0137369_106201322 | 3300012355 | Vadose Zone Soil | MADADTQLPAPDGRDAPPACAVDPDTECPVCAARGVRVKLFPIKAHYQCPECHYFDSCCM |
| Ga0157305_102215402 | 3300012891 | Soil | MDDDRNRAAQPGGSAAGDGSGAGAPPACAVDPDVECPVCAARGRRVRMLPVKAHYQCPDCHYFDSCCM* |
| Ga0157288_101018131 | 3300012901 | Soil | GCSRMDDDRNRAAQPGGSAAGDGSGAGAPPACAVDPDVECPVCAARGRRVRMLPVKAHYQCPDCHYFDSCCM* |
| Ga0164303_115745261 | 3300012957 | Soil | DRNRAPAGPQTSADAPPACAVDPDVECPACAARGRRVRMHPVKAHYQCPDCHYFDSCCM* |
| Ga0126369_100700781 | 3300012971 | Tropical Forest Soil | RCTPERMRTDDDRNRAERAPGGESGGSAAAAPPACAVDPDTECPVCAARGNRVRMLPVKAHYQCPECRYFDSCCM* |
| Ga0164307_115953022 | 3300012987 | Soil | VSRGGSAAGEGSGAGAPPACAVDPDVECPVCAARGRRVRMLPVKAHYQCPDCHYFDSCCM |
| Ga0163162_133394222 | 3300013306 | Switchgrass Rhizosphere | MDDDRDRGATNNPSGGAEPSRTATPPACAVDPDIDCPACAARGQRVRMQPVKAHYQCPECRYFDSCCM* |
| Ga0075351_11090182 | 3300014318 | Natural And Restored Wetlands | MVDERAGARAEPAADARSEAAPPACAVDPDIECPVCAARGRRVRMQPVKAHYQCPDCRYFDSCCM* |
| Ga0163163_127583011 | 3300014325 | Switchgrass Rhizosphere | RRLTAAMDDDRNRAGGEAGRAADGSPGEVAAPPACAVDPDTECPVCAARGRRVRMLPIKAHYHCPECRYFDSCCM* |
| Ga0157379_119634991 | 3300014968 | Switchgrass Rhizosphere | SLNAMDDDRDRGATNPSGGAEPSRTATPPACAVDPDIDCPACAARGTRVRMHPVKAHYQCPECHYFDSCCM* |
| Ga0157376_105853453 | 3300014969 | Miscanthus Rhizosphere | MEDDRGGASVKPSRTVDRTAEVPAPPACAVDPDTECPVCAARGERIRMLPVKAHYQCPVCHYFDSCCM* |
| Ga0132258_119566162 | 3300015371 | Arabidopsis Rhizosphere | MAEQRNRAQAEPSDDGAVREAAPPACAVDPDVDCPVCAARGRRVRMLPVKAHYQCPDCHYFDSCCM* |
| Ga0132258_126961581 | 3300015371 | Arabidopsis Rhizosphere | MAEPLNRPPAETPLEAGAAQAAAPPACAVDPDVDCPVCAARGRRVRMLPVKAHYQCPDCHYFDSCCM |
| Ga0132258_131638691 | 3300015371 | Arabidopsis Rhizosphere | MGDNRDPEATSSKGTVEAPPACAVDPDVDCPACAARGRRVRMQPIKAHYQCPECHYFDSCCM* |
| Ga0132256_1001261773 | 3300015372 | Arabidopsis Rhizosphere | MDDDRDRGATNPSGGAEPSRTATLPACAVDPDIDCPACAARGRRVRMQPVKAHYQCPECRYFDSCCM* |
| Ga0132256_1030858771 | 3300015372 | Arabidopsis Rhizosphere | VKADERAGAAAEPTVEASRSADSPPACAVDPDLECPACAARGRRVRMHPVKAHYQCPECHYFDSCCM* |
| Ga0163161_111229082 | 3300017792 | Switchgrass Rhizosphere | MDDDRDRGATNNPSGGAEPSRTATPPACAVDPDIDCPACAARGRRVRMQPVKAHYQCPECRYFDSCCM |
| Ga0184616_102724831 | 3300018055 | Groundwater Sediment | MDDDSPRSPGSDAAASAPAQRSAPAACAVDPDVDCPVCAARGRRVRMLPVKAHYQCPECRYFDSCCM |
| Ga0184627_101657431 | 3300018079 | Groundwater Sediment | MGLLRHGHHQDGGDPERAATTPPACAVDPDVDCPVCASAGKRVRMHPVKAHYQCPECRYFDSCCM |
| Ga0184628_104764792 | 3300018083 | Groundwater Sediment | MADGRDHLKAERTDESTRAASPPACAIDPDVECPVCAARGLRVRMQPVKAHYQCPDCHYFDSCCM |
| Ga0190270_119881102 | 3300018469 | Soil | MDDDSSRSPGGGAAPADQARPSAPAACAVDPDVDCPVCAARGRRVRMLPVKAHYQCPECRYFDSCCM |
| Ga0190271_106761673 | 3300018481 | Soil | MDDDSSRSPGRDAEPADQARPSAPAACAVDPDIHCPVCAARGRRVRMLPVKAHYQCPDCRYFDSCCM |
| Ga0173479_102175382 | 3300019362 | Soil | MDDDRNGAASNPSGVEPPRTAAPACAVDPDIECPVCAARGLRVRMQPVKAHYQCPDCRYFDSCCM |
| Ga0222622_101321123 | 3300022756 | Groundwater Sediment | MADGRNHPQTGPVDDPTRAASPPACAVDPDVECPVCAARGRRVRMLPVKAHYQCPDCHYFDS |
| Ga0222622_101558842 | 3300022756 | Groundwater Sediment | MAEPRNRPQAEPSHEAKAAQEAEAGQVDAPPACAVDPDVDCPVCAARGRRVRMLPVKAHYQCPDCHYFDSCCM |
| Ga0247751_10376612 | 3300023069 | Soil | MDDDRNRAAQPGGSAAGDGSGAGAPPACAVDPDVECPVCAARGRRVRMLPVKAHYQCPDCHYFDSC |
| Ga0207659_101046243 | 3300025926 | Miscanthus Rhizosphere | MDDDDSPRSPGSHPAPSDQARRSAPAACAVDPDVDCPVCAARGRRVRMLPVKAHYQCPECRYFDSCCM |
| Ga0207701_102583523 | 3300025930 | Corn, Switchgrass And Miscanthus Rhizosphere | AGAVALGGSSAARYAAVMAERPNHPQAQPSDDADRAAAPPACAVDPDVECPVCAARGRRVRMLPVKAHYQCPDCHYFDSCCM |
| Ga0207644_109725482 | 3300025931 | Switchgrass Rhizosphere | MDDDRNRAASGRGSAAGERPGSEAPPACAVDPDVECPVCAARGRRVRMLPVKAHYQCPDCHYFDSCC |
| Ga0207644_110219072 | 3300025931 | Switchgrass Rhizosphere | MDDDRRRASAGPNNDDASSDASPPACAVDPDVECPVCAARGLRVRMHPVKAHYQCPDCHYFDSCCM |
| Ga0207670_113027632 | 3300025936 | Switchgrass Rhizosphere | MAERPNHPQAQPSDDADRAAAPPACAVDPDVECPVCAARGRRVRMLPVKAHYQCPDCHYFDSCCM |
| Ga0207704_100505534 | 3300025938 | Miscanthus Rhizosphere | MDDNRNRVAPSSSNGAEAHAAPPACAVDPDVDCPACAVRGRRVRMHPVKAHYQCPECHYFDSCCM |
| Ga0207691_101524252 | 3300025940 | Miscanthus Rhizosphere | MAERPNHPQAQPSDDAQRAAAPPACAVDPDVECPVCAARGRRVRMLPVKAHYQCPDCHYFDSCCM |
| Ga0207661_100047127 | 3300025944 | Corn Rhizosphere | MDDNRNRIPTSSSDGAEAPRAVAPACAVDPDVDCPVCAARGRRVRMHPVKAHYQCPDCHYFDSCCM |
| Ga0207661_103042002 | 3300025944 | Corn Rhizosphere | MDDERQDKTDGLGGVGAGKDPSTGGVPPACAIDPDTECPVCAARGQRVRMLPVKAHYQCPQCHYFDSCCM |
| Ga0207658_101182781 | 3300025986 | Switchgrass Rhizosphere | RSKFGILSGMADERAGRAADAAAEAASPPACAVDPDLECPVCAARGTRVRMHPVKAHYQCPECHYFDSCCM |
| Ga0207677_117922972 | 3300026023 | Miscanthus Rhizosphere | LNAMDDDRDRGATNPSGGAEPSRTATPPACAVDPDIDCPACAARGRRVRMQPVKAHYQCPECRYFDSCCM |
| Ga0207708_119722472 | 3300026075 | Corn, Switchgrass And Miscanthus Rhizosphere | RGRRVNRMDDDRNGAASNPSGVESPRTAAPACAVDPDIECPVCAARGLRVRMQPVKAHYQCPDCRYFDSCCM |
| Ga0207641_115052072 | 3300026088 | Switchgrass Rhizosphere | MDDDRRRAAAGPNNDDASSDASPPACAVDPDVECPVCAARGLRVRMHPVKAHYQCPDCHYFDSCCM |
| Ga0207674_108473601 | 3300026116 | Corn Rhizosphere | DRGATNPSGGAEPSRTATPPACAVDPDIDCPACAARGRRVRMQPVKAHYQCPACRYFDSCCM |
| Ga0209465_100028103 | 3300027874 | Tropical Forest Soil | MTMTGAPVRCTPERMRTDDDRNRAERAPGGESGGSAATAPPACAVDPDTECPVCAARGNRVRMLPVKAHYQCPECRYFDSCCM |
| Ga0207428_100059563 | 3300027907 | Populus Rhizosphere | MDDDSPRSPDSQPAPSDQTQRSAPAACAVDPDVDCPVCAARGRRVRMLPVKAHYQCPECRYFDSCCM |
| Ga0268266_111744263 | 3300028379 | Switchgrass Rhizosphere | MDDNRNRIPTSSSDGAEAPRAVVPACAVDPDVDCPVCAARGRRVRMHPVKAHYQCPDCHYFDSCCM |
| Ga0307503_102242241 | 3300028802 | Soil | MADGRDDLKAERTDDTTRGTSPPACAIDPDVECPVCAARGLRVRMHPVKAHYQCPDCHYFDSCCM |
| Ga0307296_104521712 | 3300028819 | Soil | MDDDRDRAAAGSNDGAESSRVAPPACAVDPDIECPVCAARGRRVRMHPVKAHYQCPDCHYFDSCCM |
| Ga0310888_102881492 | 3300031538 | Soil | MDDDRDRGATNPSGGAEPSRTATPPACAVDPDIDCPACAARGRRVRMQPVKAHYQCPECRYFDSCCM |
| Ga0310887_102904401 | 3300031547 | Soil | MDDDSQRSPGSQPAPPDEARRSPPAACAVDPDIDCPVCAARGRRVRMLPVKAHYQCPDCHYFDSCCM |
| Ga0310900_103629012 | 3300031908 | Soil | MDDDSQRSPGSQPAPPDEARRSPPAACAVDPDIDCPVCAARGRRVRMLPVKAHYQCPECRYFDSCCM |
| Ga0310899_106236011 | 3300032017 | Soil | DRGATNPSGGAEPSRTATPPACAVDPDIDCPACAARGRRVRMQPVKAHYQCPECRYFDSCCM |
| Ga0310890_115220051 | 3300032075 | Soil | MDDDSPRSPGSQGAPSDQARGAAPAACAVDPDVDCPVCAARGRRVRMLPVKAHYQCPECRYFDSCCM |
| Ga0214472_111232032 | 3300033407 | Soil | MARTPLSAGIADDPNEASAPPACAVDPDSHCPVCAARGERVRMFPIKAHYQCPVCRYFDSCCM |
| Ga0310810_103742283 | 3300033412 | Soil | MDDDRNRAAQPGGSAAGDGSGAGAPPACAVDPDVECPVCAARGRRVRMLPVKAHYQCPDCHYFDSCCM |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |