Basic Information | |
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Family ID | F101928 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 102 |
Average Sequence Length | 47 residues |
Representative Sequence | LLRKAKAVCMISRAITVPQTLEPTVETGKVPVEGWSNQDAVVKLGV |
Number of Associated Samples | 91 |
Number of Associated Scaffolds | 102 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 0.00 % |
% of genes near scaffold ends (potentially truncated) | 99.02 % |
% of genes from short scaffolds (< 2000 bps) | 93.14 % |
Associated GOLD sequencing projects | 84 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.20 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (100.000 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil (14.706 % of family members) |
Environment Ontology (ENVO) | Unclassified (33.333 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (59.804 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 28.38% β-sheet: 0.00% Coil/Unstructured: 71.62% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.20 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Peatland Bog Freshwater Sediment Watersheds Soil Vadose Zone Soil Tropical Forest Soil Surface Soil Peatlands Soil Soil Soil Soil Hardwood Forest Soil Soil Peatland Tropical Peatland Tropical Forest Soil Corn, Switchgrass And Miscanthus Rhizosphere Corn Rhizosphere Agricultural Soil Soil Avena Fatua Rhizosphere Rhizosphere |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
Ga0068966_13786921 | 3300004476 | Peatlands Soil | REAGLTLLRRAKALCMISRAITIPQTLEPCVETVKVPLEGWVSQDAELKIGV* |
Ga0068947_11582961 | 3300004597 | Peatlands Soil | RRAKLGCMISRAITIPQTLEPCVETGKVPVEGWSSTDAELKIGV* |
Ga0068964_12011021 | 3300004600 | Peatlands Soil | LLRRAKLGCMISRAITIPQTLEPCVETGKVPVEGWSSTDAELKIGV* |
Ga0068934_12803321 | 3300004601 | Peatlands Soil | ALCMISRAISIPQTLEPTVETGKVPVEGWSNQDAAAKVGV* |
Ga0068948_12709671 | 3300004607 | Peatlands Soil | EAGLALLRRAKALCMISRAITIPQTLEPCVETVKVPLEGWVSQDAELKIGV* |
Ga0068925_12391751 | 3300004611 | Peatlands Soil | EEQREAGFTLLRNTKAVCMISRAITVPQTLEPSVETGKVPVEGWSNQDAGVKVGV* |
Ga0068955_10129822 | 3300004617 | Peatlands Soil | AGLALLRRAKLGCMISRAITIPQTLEPCVEAGKVPVEGWSSTDAELKIGV* |
Ga0072322_13310822 | 3300004973 | Peatlands Soil | VCMISRAISAPQTLEPWVETGKVPVEGWSNQDTAVVKLGV* |
Ga0070709_100403905 | 3300005434 | Corn, Switchgrass And Miscanthus Rhizosphere | LRETGLSLLRRTKSVCMISRAITVPQTLEAVVETVRVPVEGWANDDAVVKLGV* |
Ga0070713_1021780072 | 3300005436 | Corn, Switchgrass And Miscanthus Rhizosphere | GLALLRRTKSLCMISRAITIPQTMEPTVETPKVPVEGWSNEDAVVKLGV* |
Ga0070710_109756561 | 3300005437 | Corn, Switchgrass And Miscanthus Rhizosphere | RKTKAVCMISRAITVPQTLEPTVETGKIPVEGWSNQDAVLKLGV* |
Ga0070698_1000976741 | 3300005471 | Corn, Switchgrass And Miscanthus Rhizosphere | QCEAGLNLLRRTKAVCMISRAITVPQTLEPTVETGKVPVEGWSNQDAVVKLGV* |
Ga0070684_1003642831 | 3300005535 | Corn Rhizosphere | GLRETGLSLLRRTKSVCMISRAITVPQTLEAVVETVRVPVEGWANDDAVVKLGV* |
Ga0070733_108801502 | 3300005541 | Surface Soil | SACMISRAITVPQTLEPVVETVKMPVEGWTVQDAAVKIGV* |
Ga0070732_101970333 | 3300005542 | Surface Soil | LRKAKAQCMISRAITVPQTLETYVEAGKVPVEGWSNQDVAKVGV* |
Ga0070732_102702071 | 3300005542 | Surface Soil | LRKTKAVCMISRAITVPQTLEPTVETGKVPVEGWSNQDAVMKLGV* |
Ga0070732_108157342 | 3300005542 | Surface Soil | LCEAGLNLLRRAKSVCMISRAITVPQTLEPVVETVKLPVEGWVGQDAVVKLGV* |
Ga0066693_104898322 | 3300005566 | Soil | LALLRRTKSVCMISRAITIPQTMEPTVEIIKVPVEGWDNEDAVLKLGV* |
Ga0066903_1019566311 | 3300005764 | Tropical Forest Soil | TLLRCVKSVCMISRAITVPQTLEPTVESVKIPVEGWTNQEVVAKLGV* |
Ga0075017_1004584511 | 3300006059 | Watersheds | RRAKALCMISRAITVPQTLEPCVETVKVPLEGWTSQDAVLKIGV* |
Ga0075019_104880412 | 3300006086 | Watersheds | VEVGLTLLRRTKSVCMISRAITVPQTMEPTVESVKIPVEGWSTQDAAVKLGV* |
Ga0075015_1001524033 | 3300006102 | Watersheds | CMISRAITVPQTMEPMVETVKMPVEGWTNQDAVVKLGV* |
Ga0070715_108718701 | 3300006163 | Corn, Switchgrass And Miscanthus Rhizosphere | TKSVCMISRAITVPQTMEPVVESVKLPVEGWINQDAVVKLGV* |
Ga0070712_1012123272 | 3300006175 | Corn, Switchgrass And Miscanthus Rhizosphere | PSDGLRETGLSLLRRTKSVCMISRAITVPQTLEAVVETVRVPVEGWANDDAVVKLGV* |
Ga0126374_107458781 | 3300009792 | Tropical Forest Soil | LLRRTKSVCMISRAITVPQTMEPTVERVKLPVEGWTNQEVVAKLGV* |
Ga0126373_112544793 | 3300010048 | Tropical Forest Soil | HSEEQCEAGLQLLRRTKSICMISRAITVPQTLEPVVEIVKVPVEGWTAQDAAVKIGV* |
Ga0126370_106576251 | 3300010358 | Tropical Forest Soil | EDQCEAGLALLRRTKSICMISRAITVPQTLEPTVETIKMPVEGWTSQDAMVKLGV* |
Ga0126376_123462201 | 3300010359 | Tropical Forest Soil | ICMISRAITVPQTLEPVVEIVKVPVEGWTARDAAVKIGV* |
Ga0126379_101108771 | 3300010366 | Tropical Forest Soil | EAGLALLRRTKSVCMISRAITVPQTMEPTVETLKMPVEVWTNQDAVVKRGV* |
Ga0126381_1000574356 | 3300010376 | Tropical Forest Soil | GLTLLRRTKSVCMISRAITVPQTMEPTVERVKLPVEGWTNQEVVAKLGV* |
Ga0126381_1000885916 | 3300010376 | Tropical Forest Soil | HSEDQCEAGLQLLRRTKSICMISRAITVPQTLEPIVETVKVPVEGWTAQDTAVKIGV* |
Ga0126381_1020673911 | 3300010376 | Tropical Forest Soil | RTKSICMISRAITVPQTLEPVVEIVKVPVEGWTAQDAAVKIGV* |
Ga0126383_114041701 | 3300010398 | Tropical Forest Soil | TKSVCMISRAITVPLKLEPTVETAKVLIEGWSAEDTALELGV* |
Ga0138554_1265211 | 3300011049 | Peatlands Soil | RAKLGCMISRAITIPQTLEPCVETGKVPVEGWSSTDAELKIGV* |
Ga0138571_1183513 | 3300011050 | Peatlands Soil | LLRRTKALCMISRAISVPQTLEPTVETGKVPVEGWSNQDVAAKVGV* |
Ga0138541_10194572 | 3300011058 | Peatlands Soil | LCMISRAISIPQTLEPTVETGKVPVEGWSNQDAAAKVGV* |
Ga0138565_10413801 | 3300011078 | Peatlands Soil | MISRAITVPQTLEPAVETGKVPVEGWTNQETAAKLGV* |
Ga0138569_11891363 | 3300011079 | Peatlands Soil | AGFNLLRKTKAVCMISRAITVPQTLEPSVETGKVPVEGWSNQDAGVKVGV* |
Ga0138570_10501012 | 3300011087 | Peatlands Soil | AVCLISRAITVPQTLEPSVETTRTPVEGWTEDAAVKVGV* |
Ga0138579_10348891 | 3300011090 | Peatlands Soil | MISRAISVPQTLEPTVETGKVPVEGWSNQDVAAKVGV* |
Ga0150985_1044236513 | 3300012212 | Avena Fatua Rhizosphere | ASEDRREAGLALLRRTKSVCMISRAITVPQTMEPTVEIIKVPVEGWANEDAVLKLGV* |
Ga0137385_109788531 | 3300012359 | Vadose Zone Soil | KTKAICMISRAITVPQTLEPSVETGKVPVEGWNNQDAGVKLLV* |
Ga0137373_109479232 | 3300012532 | Vadose Zone Soil | GLNLLRKTKAICMISRAITVPQTLEPSVETGKVPVEGWNNQDAGVKLLV* |
Ga0164309_113830302 | 3300012984 | Soil | QCEAGLALLRRTKSICMISRAITVPQTMEPTVETTKMPVEGWTSQDAMVKLGV* |
Ga0181526_100489985 | 3300014200 | Bog | LALLRKAKAQCMISRAISAPQTLEPWVETGKVPVEGWSNQDSAVKVGV* |
Ga0182033_105888281 | 3300016319 | Soil | SVCMVSRAITVPQTLEPTVETAKVPVEGWSAQDMEVKPGV |
Ga0182035_120986432 | 3300016341 | Soil | VHSEDMCEAGLALLRRAKSICMISRAITVPQTMEPTVETVKLPVEGWSNQDAAVKIGV |
Ga0182039_105668323 | 3300016422 | Soil | CMISRAITVPQTMEPTVETVKLPVEGWSNQDAAVKIGV |
Ga0181507_10578321 | 3300016705 | Peatland | SEDLCEAGLALLRKAKAQCMISRAISAPQTLEPWVETGKVPVEGWSNQDSAAKVGV |
Ga0187814_102010313 | 3300017932 | Freshwater Sediment | ISRAISVPQTMEPTVETVKMPVEGWREQDAVADIKIGV |
Ga0187803_103310091 | 3300017934 | Freshwater Sediment | QCEAGLGLLRKTKALCMISRAITVPQTLEPSVEHGKVPVEGWSNQDAGVKVGA |
Ga0187819_107377311 | 3300017943 | Freshwater Sediment | EDQREIGLGLLRRAKAVCMISRAITIPQTLEPFVEAGKVPVEGWSNQEATLKLGV |
Ga0187817_110868402 | 3300017955 | Freshwater Sediment | EIGLGLLRRAKAVCMISRAITIPQTLEPFVETGKVPVEGWNNQDATVKLGV |
Ga0187778_111273382 | 3300017961 | Tropical Peatland | ISRAITVPQTLEPCIEAGKVPVEGWSNQDAELKIGV |
Ga0187781_111422831 | 3300017972 | Tropical Peatland | TGLALLRRTKALCLISRAVTVPQTLEPVVEATRAPVEGWSDHEAAVKLGV |
Ga0187782_103239633 | 3300017975 | Tropical Peatland | MISRAITVPQTLEPVVETVKVPVEGWTEHDATVKLGA |
Ga0187822_102938032 | 3300017994 | Freshwater Sediment | ETGLSLLRRTKSVCMISRAITVPQTLEAVVETVRVPVEGWANDDAVVKLGV |
Ga0187873_10732553 | 3300018013 | Peatland | CEAGLALLRKAKAQCMISRAISAPQTLEPWVETGKVPVEGWSNQDSAVKVGV |
Ga0187875_102053011 | 3300018035 | Peatland | EDLCEAGLALLRKAKAQCMISRAISAPQTLEPWVETGKVPVEGWSNQDSAAKVGV |
Ga0187766_105513671 | 3300018058 | Tropical Peatland | CMISRAITIPQTLEPFVEAGKIPAEGWSNPEATLKLGV |
Ga0187765_107534231 | 3300018060 | Tropical Peatland | CMISRAITVPQTLEPTVETAKLPVEGWHEQDADVKIGV |
Ga0187784_101200784 | 3300018062 | Tropical Peatland | SEEHREMGLGLLRRAKAVCMISRAITIPQTLEPTVEVVKVPVEGWNNQDATVKLGA |
Ga0187793_12967113 | 3300019241 | Peatland | RKAKAVCLISRVITVPQTFEPRVEAGKMPPEGWAEDSVVKLGA |
Ga0187796_15602323 | 3300019264 | Peatland | RRAKAVCMISRAITVPQTLEPVVETVKVPVEGWADHDATVKLGA |
Ga0187798_12749231 | 3300019275 | Peatland | GLLRRAKAMCMISRAITVPQTLEAAVDVVKVPVEGWNNQDATVKLGA |
Ga0187800_12526463 | 3300019278 | Peatland | LLRRTKSVCMISRAITVPQVLEPIVETVKTPVEGWSTQDAALKVGV |
Ga0187800_13742381 | 3300019278 | Peatland | KLGCMISRAITVPQTLEPCVEAGKVPVEGWSSTDAELKIGV |
Ga0187800_14242381 | 3300019278 | Peatland | EEQREVGLGLLRRAKALCMISRAITVPQTLEPTVETVKVPVEGWTDQDATVKLGA |
Ga0210403_114190671 | 3300020580 | Soil | RESGMALLRKAKAACLISRAISVPQTMEPRVETGKVPVEGWSNEGATVEVGV |
Ga0210395_106188501 | 3300020582 | Soil | GLNLLRRAKSVCMISRAITVPQTLEPVVETVKLPVEGWVGQEAVVKLGV |
Ga0210395_110863991 | 3300020582 | Soil | LLRKAKAVCMISRAITVPQTLEPTVETGKVPVEGWSNQDAVVKLGV |
Ga0210400_108626011 | 3300021170 | Soil | LRESGMALLRKAKAACLISRAISVPQTMEPRVETGKVPVEGWSNEGATVEVGV |
Ga0210391_107075541 | 3300021433 | Soil | SSEDMCEAGLGLLRRTKALCMISRAISVPQTMEPTVETGKVPVEGWSQQDADVNLGA |
Ga0210402_105790741 | 3300021478 | Soil | ACMISRAITVPQTLEPTVESIKMPAEGWSNQDAVVKLGV |
Ga0224547_10553691 | 3300023255 | Soil | MISRALSVPQTLEPTVESDKMPVEGWSNHDAGMKIGV |
Ga0207692_102473183 | 3300025898 | Corn, Switchgrass And Miscanthus Rhizosphere | KTKAVCMISRAITVPQTLEPGVETGKVPVEGWNNQDAGVKLLV |
Ga0207664_111436733 | 3300025929 | Agricultural Soil | SRAITVPQTLEAVVEAVRVPVEGWANDDAVVKLGV |
Ga0207664_113130481 | 3300025929 | Agricultural Soil | VCMISRAITVPQTMEPAVETVKVPVEGWSNDDAAVKVGV |
Ga0207665_103894651 | 3300025939 | Corn, Switchgrass And Miscanthus Rhizosphere | RTKSVCMISRAITVPQTMEPTVETIKVPVEGWDNEDAVVKLGV |
Ga0207780_10887871 | 3300027313 | Tropical Forest Soil | LLRKTKSACMISRAITVPQTMEPCVETGKVPVEGWSNLDSVVKLGV |
Ga0209580_103177583 | 3300027842 | Surface Soil | GLTLLRRTKSVCMISRAITVPQTMEPAVETVKVPVEGWSNDDAVVKLGV |
Ga0209580_105414391 | 3300027842 | Surface Soil | TVQSEDLCEAGLNLLRRAKSVCMISRAITVPQTLEPVVETVKLPVEGWVGQDAVVKLGV |
Ga0209465_105466471 | 3300027874 | Tropical Forest Soil | AGLTLLRRVKSVCMISRAITVPQTLEPTVESVKIPVEGWTNQEVVAKLGV |
Ga0209067_106394812 | 3300027898 | Watersheds | GLALLRKAKAQCMISRAITVPQTLETYVEAGKVPVEGWSNQDVEKVGV |
Ga0209583_104354531 | 3300027910 | Watersheds | EEQREAGLALLRRTKQLCMISRAITVPQTLEPAVETGKVPVEGWTNQESAVKLGV |
Ga0209698_109490901 | 3300027911 | Watersheds | EAGLTLLRRTKSGCMISRAITVPQTMEPIVESVKMPVEGWSNQDTAVKLGV |
Ga0265336_101062483 | 3300028666 | Rhizosphere | CMISRAITVPQTLEPSVETGKVPVEGWNNQDVAVKVGV |
Ga0265340_102528453 | 3300031247 | Rhizosphere | AGLNLLRKTKAVCMISRAITVPQTLEPTVETGKVPVEGWNNQDAAVKLGV |
Ga0318542_104736892 | 3300031668 | Soil | MCEAGLALLRRAKSICMISRAITVPQTMEPTVETVKLPVEGWSNQDAAVKIGV |
Ga0318561_104522742 | 3300031679 | Soil | CMISRAITVPQTLEPTVESVKIPVEGWTNQEVVAKLGV |
Ga0307478_102005653 | 3300031823 | Hardwood Forest Soil | MISRAITVPQTLEATVEAVKMPVEGWAVQETAKLGV |
Ga0306921_104853361 | 3300031912 | Soil | DQIEAGLTLLRRAKSVCMISRAITVPQTLEPTVESVKIPVEGWTNQEVVAKLGV |
Ga0310916_104752511 | 3300031942 | Soil | AGLTLLRRAKSVCMISRAITVPQTLEPTVESVKIPVEGWTNQEVVAKLGV |
Ga0306926_108359133 | 3300031954 | Soil | TKSVCMISRAITVPQTLEPSVESVKIPVEGWTSQDTVVKLGV |
Ga0306924_105453313 | 3300032076 | Soil | LLRRAKSVCMISRAITVPQTLEPTVESVKIPVEGWTNQEVVAKLGV |
Ga0306924_122768022 | 3300032076 | Soil | LNLLRRTKSVCMVSRAITVPQTLEPTVETAKVPVEGWSAQDMEVKPGV |
Ga0335085_105551283 | 3300032770 | Soil | GLTLLRRAKSVCMISRAITVPQTLEPAVETVKVPVEGWVDEAAEAKIGV |
Ga0335085_120481171 | 3300032770 | Soil | TLLRRTKSVCMISRAITVPQTLEPSVESVKMPVEGWTNQDTVVKLGV |
Ga0335080_107063741 | 3300032828 | Soil | CMISRAITVPQTMEPLVESVKLPVEGWINQDAVVKIGV |
Ga0335070_106389031 | 3300032829 | Soil | RTKSVCMISRAITVPQTMEPMVESVKLPVEGWTNQDAVVKIGV |
Ga0335083_103187131 | 3300032954 | Soil | CLISRAITVPQTLEPAVETIKIPVEGWANQDAAVKVGV |
Ga0310914_116541371 | 3300033289 | Soil | IEAGLRLLRRTQSGCMISRAITVPQTMEATVESMKMPVAGWTGRDAAAKLDV |
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