NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F101928

Metagenome / Metatranscriptome Family F101928

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F101928
Family Type Metagenome / Metatranscriptome
Number of Sequences 102
Average Sequence Length 47 residues
Representative Sequence LLRKAKAVCMISRAITVPQTLEPTVETGKVPVEGWSNQDAVVKLGV
Number of Associated Samples 91
Number of Associated Scaffolds 102

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 99.02 %
% of genes from short scaffolds (< 2000 bps) 93.14 %
Associated GOLD sequencing projects 84
AlphaFold2 3D model prediction Yes
3D model pTM-score0.20

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (100.000 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil
(14.706 % of family members)
Environment Ontology (ENVO) Unclassified
(33.333 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(59.804 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.
1Ga0068966_13786921
2Ga0068947_11582961
3Ga0068964_12011021
4Ga0068934_12803321
5Ga0068948_12709671
6Ga0068925_12391751
7Ga0068955_10129822
8Ga0072322_13310822
9Ga0070709_100403905
10Ga0070713_1021780072
11Ga0070710_109756561
12Ga0070698_1000976741
13Ga0070684_1003642831
14Ga0070733_108801502
15Ga0070732_101970333
16Ga0070732_102702071
17Ga0070732_108157342
18Ga0066693_104898322
19Ga0066903_1019566311
20Ga0075017_1004584511
21Ga0075019_104880412
22Ga0075015_1001524033
23Ga0070715_108718701
24Ga0070712_1012123272
25Ga0126374_107458781
26Ga0126373_112544793
27Ga0126370_106576251
28Ga0126376_123462201
29Ga0126379_101108771
30Ga0126381_1000574356
31Ga0126381_1000885916
32Ga0126381_1020673911
33Ga0126383_114041701
34Ga0138554_1265211
35Ga0138571_1183513
36Ga0138541_10194572
37Ga0138565_10413801
38Ga0138569_11891363
39Ga0138570_10501012
40Ga0138579_10348891
41Ga0150985_1044236513
42Ga0137385_109788531
43Ga0137373_109479232
44Ga0164309_113830302
45Ga0181526_100489985
46Ga0182033_105888281
47Ga0182035_120986432
48Ga0182039_105668323
49Ga0181507_10578321
50Ga0187814_102010313
51Ga0187803_103310091
52Ga0187819_107377311
53Ga0187817_110868402
54Ga0187778_111273382
55Ga0187781_111422831
56Ga0187782_103239633
57Ga0187822_102938032
58Ga0187873_10732553
59Ga0187875_102053011
60Ga0187766_105513671
61Ga0187765_107534231
62Ga0187784_101200784
63Ga0187793_12967113
64Ga0187796_15602323
65Ga0187798_12749231
66Ga0187800_12526463
67Ga0187800_13742381
68Ga0187800_14242381
69Ga0210403_114190671
70Ga0210395_106188501
71Ga0210395_110863991
72Ga0210400_108626011
73Ga0210391_107075541
74Ga0210402_105790741
75Ga0224547_10553691
76Ga0207692_102473183
77Ga0207664_111436733
78Ga0207664_113130481
79Ga0207665_103894651
80Ga0207780_10887871
81Ga0209580_103177583
82Ga0209580_105414391
83Ga0209465_105466471
84Ga0209067_106394812
85Ga0209583_104354531
86Ga0209698_109490901
87Ga0265336_101062483
88Ga0265340_102528453
89Ga0318542_104736892
90Ga0318561_104522742
91Ga0307478_102005653
92Ga0306921_104853361
93Ga0310916_104752511
94Ga0306926_108359133
95Ga0306924_105453313
96Ga0306924_122768022
97Ga0335085_105551283
98Ga0335085_120481171
99Ga0335080_107063741
100Ga0335070_106389031
101Ga0335083_103187131
102Ga0310914_116541371
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 28.38%    β-sheet: 0.00%    Coil/Unstructured: 71.62%
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Variant

51015202530354045LLRKAKAVCMISRAITVPQTLEPTVETGKVPVEGWSNQDAVVKLGVSequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.20
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
100.0%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Peatland
Bog
Freshwater Sediment
Watersheds
Soil
Vadose Zone Soil
Tropical Forest Soil
Surface Soil
Peatlands Soil
Soil
Soil
Soil
Hardwood Forest Soil
Soil
Peatland
Tropical Peatland
Tropical Forest Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Corn Rhizosphere
Agricultural Soil
Soil
Avena Fatua Rhizosphere
Rhizosphere
2.9%4.9%5.9%8.8%5.9%14.7%9.8%6.9%4.9%5.9%5.9%2.9%7.8%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0068966_137869213300004476Peatlands SoilREAGLTLLRRAKALCMISRAITIPQTLEPCVETVKVPLEGWVSQDAELKIGV*
Ga0068947_115829613300004597Peatlands SoilRRAKLGCMISRAITIPQTLEPCVETGKVPVEGWSSTDAELKIGV*
Ga0068964_120110213300004600Peatlands SoilLLRRAKLGCMISRAITIPQTLEPCVETGKVPVEGWSSTDAELKIGV*
Ga0068934_128033213300004601Peatlands SoilALCMISRAISIPQTLEPTVETGKVPVEGWSNQDAAAKVGV*
Ga0068948_127096713300004607Peatlands SoilEAGLALLRRAKALCMISRAITIPQTLEPCVETVKVPLEGWVSQDAELKIGV*
Ga0068925_123917513300004611Peatlands SoilEEQREAGFTLLRNTKAVCMISRAITVPQTLEPSVETGKVPVEGWSNQDAGVKVGV*
Ga0068955_101298223300004617Peatlands SoilAGLALLRRAKLGCMISRAITIPQTLEPCVEAGKVPVEGWSSTDAELKIGV*
Ga0072322_133108223300004973Peatlands SoilVCMISRAISAPQTLEPWVETGKVPVEGWSNQDTAVVKLGV*
Ga0070709_1004039053300005434Corn, Switchgrass And Miscanthus RhizosphereLRETGLSLLRRTKSVCMISRAITVPQTLEAVVETVRVPVEGWANDDAVVKLGV*
Ga0070713_10217800723300005436Corn, Switchgrass And Miscanthus RhizosphereGLALLRRTKSLCMISRAITIPQTMEPTVETPKVPVEGWSNEDAVVKLGV*
Ga0070710_1097565613300005437Corn, Switchgrass And Miscanthus RhizosphereRKTKAVCMISRAITVPQTLEPTVETGKIPVEGWSNQDAVLKLGV*
Ga0070698_10009767413300005471Corn, Switchgrass And Miscanthus RhizosphereQCEAGLNLLRRTKAVCMISRAITVPQTLEPTVETGKVPVEGWSNQDAVVKLGV*
Ga0070684_10036428313300005535Corn RhizosphereGLRETGLSLLRRTKSVCMISRAITVPQTLEAVVETVRVPVEGWANDDAVVKLGV*
Ga0070733_1088015023300005541Surface SoilSACMISRAITVPQTLEPVVETVKMPVEGWTVQDAAVKIGV*
Ga0070732_1019703333300005542Surface SoilLRKAKAQCMISRAITVPQTLETYVEAGKVPVEGWSNQDVAKVGV*
Ga0070732_1027020713300005542Surface SoilLRKTKAVCMISRAITVPQTLEPTVETGKVPVEGWSNQDAVMKLGV*
Ga0070732_1081573423300005542Surface SoilLCEAGLNLLRRAKSVCMISRAITVPQTLEPVVETVKLPVEGWVGQDAVVKLGV*
Ga0066693_1048983223300005566SoilLALLRRTKSVCMISRAITIPQTMEPTVEIIKVPVEGWDNEDAVLKLGV*
Ga0066903_10195663113300005764Tropical Forest SoilTLLRCVKSVCMISRAITVPQTLEPTVESVKIPVEGWTNQEVVAKLGV*
Ga0075017_10045845113300006059WatershedsRRAKALCMISRAITVPQTLEPCVETVKVPLEGWTSQDAVLKIGV*
Ga0075019_1048804123300006086WatershedsVEVGLTLLRRTKSVCMISRAITVPQTMEPTVESVKIPVEGWSTQDAAVKLGV*
Ga0075015_10015240333300006102WatershedsCMISRAITVPQTMEPMVETVKMPVEGWTNQDAVVKLGV*
Ga0070715_1087187013300006163Corn, Switchgrass And Miscanthus RhizosphereTKSVCMISRAITVPQTMEPVVESVKLPVEGWINQDAVVKLGV*
Ga0070712_10121232723300006175Corn, Switchgrass And Miscanthus RhizospherePSDGLRETGLSLLRRTKSVCMISRAITVPQTLEAVVETVRVPVEGWANDDAVVKLGV*
Ga0126374_1074587813300009792Tropical Forest SoilLLRRTKSVCMISRAITVPQTMEPTVERVKLPVEGWTNQEVVAKLGV*
Ga0126373_1125447933300010048Tropical Forest SoilHSEEQCEAGLQLLRRTKSICMISRAITVPQTLEPVVEIVKVPVEGWTAQDAAVKIGV*
Ga0126370_1065762513300010358Tropical Forest SoilEDQCEAGLALLRRTKSICMISRAITVPQTLEPTVETIKMPVEGWTSQDAMVKLGV*
Ga0126376_1234622013300010359Tropical Forest SoilICMISRAITVPQTLEPVVEIVKVPVEGWTARDAAVKIGV*
Ga0126379_1011087713300010366Tropical Forest SoilEAGLALLRRTKSVCMISRAITVPQTMEPTVETLKMPVEVWTNQDAVVKRGV*
Ga0126381_10005743563300010376Tropical Forest SoilGLTLLRRTKSVCMISRAITVPQTMEPTVERVKLPVEGWTNQEVVAKLGV*
Ga0126381_10008859163300010376Tropical Forest SoilHSEDQCEAGLQLLRRTKSICMISRAITVPQTLEPIVETVKVPVEGWTAQDTAVKIGV*
Ga0126381_10206739113300010376Tropical Forest SoilRTKSICMISRAITVPQTLEPVVEIVKVPVEGWTAQDAAVKIGV*
Ga0126383_1140417013300010398Tropical Forest SoilTKSVCMISRAITVPLKLEPTVETAKVLIEGWSAEDTALELGV*
Ga0138554_12652113300011049Peatlands SoilRAKLGCMISRAITIPQTLEPCVETGKVPVEGWSSTDAELKIGV*
Ga0138571_11835133300011050Peatlands SoilLLRRTKALCMISRAISVPQTLEPTVETGKVPVEGWSNQDVAAKVGV*
Ga0138541_101945723300011058Peatlands SoilLCMISRAISIPQTLEPTVETGKVPVEGWSNQDAAAKVGV*
Ga0138565_104138013300011078Peatlands SoilMISRAITVPQTLEPAVETGKVPVEGWTNQETAAKLGV*
Ga0138569_118913633300011079Peatlands SoilAGFNLLRKTKAVCMISRAITVPQTLEPSVETGKVPVEGWSNQDAGVKVGV*
Ga0138570_105010123300011087Peatlands SoilAVCLISRAITVPQTLEPSVETTRTPVEGWTEDAAVKVGV*
Ga0138579_103488913300011090Peatlands SoilMISRAISVPQTLEPTVETGKVPVEGWSNQDVAAKVGV*
Ga0150985_10442365133300012212Avena Fatua RhizosphereASEDRREAGLALLRRTKSVCMISRAITVPQTMEPTVEIIKVPVEGWANEDAVLKLGV*
Ga0137385_1097885313300012359Vadose Zone SoilKTKAICMISRAITVPQTLEPSVETGKVPVEGWNNQDAGVKLLV*
Ga0137373_1094792323300012532Vadose Zone SoilGLNLLRKTKAICMISRAITVPQTLEPSVETGKVPVEGWNNQDAGVKLLV*
Ga0164309_1138303023300012984SoilQCEAGLALLRRTKSICMISRAITVPQTMEPTVETTKMPVEGWTSQDAMVKLGV*
Ga0181526_1004899853300014200BogLALLRKAKAQCMISRAISAPQTLEPWVETGKVPVEGWSNQDSAVKVGV*
Ga0182033_1058882813300016319SoilSVCMVSRAITVPQTLEPTVETAKVPVEGWSAQDMEVKPGV
Ga0182035_1209864323300016341SoilVHSEDMCEAGLALLRRAKSICMISRAITVPQTMEPTVETVKLPVEGWSNQDAAVKIGV
Ga0182039_1056683233300016422SoilCMISRAITVPQTMEPTVETVKLPVEGWSNQDAAVKIGV
Ga0181507_105783213300016705PeatlandSEDLCEAGLALLRKAKAQCMISRAISAPQTLEPWVETGKVPVEGWSNQDSAAKVGV
Ga0187814_1020103133300017932Freshwater SedimentISRAISVPQTMEPTVETVKMPVEGWREQDAVADIKIGV
Ga0187803_1033100913300017934Freshwater SedimentQCEAGLGLLRKTKALCMISRAITVPQTLEPSVEHGKVPVEGWSNQDAGVKVGA
Ga0187819_1073773113300017943Freshwater SedimentEDQREIGLGLLRRAKAVCMISRAITIPQTLEPFVEAGKVPVEGWSNQEATLKLGV
Ga0187817_1108684023300017955Freshwater SedimentEIGLGLLRRAKAVCMISRAITIPQTLEPFVETGKVPVEGWNNQDATVKLGV
Ga0187778_1112733823300017961Tropical PeatlandISRAITVPQTLEPCIEAGKVPVEGWSNQDAELKIGV
Ga0187781_1114228313300017972Tropical PeatlandTGLALLRRTKALCLISRAVTVPQTLEPVVEATRAPVEGWSDHEAAVKLGV
Ga0187782_1032396333300017975Tropical PeatlandMISRAITVPQTLEPVVETVKVPVEGWTEHDATVKLGA
Ga0187822_1029380323300017994Freshwater SedimentETGLSLLRRTKSVCMISRAITVPQTLEAVVETVRVPVEGWANDDAVVKLGV
Ga0187873_107325533300018013PeatlandCEAGLALLRKAKAQCMISRAISAPQTLEPWVETGKVPVEGWSNQDSAVKVGV
Ga0187875_1020530113300018035PeatlandEDLCEAGLALLRKAKAQCMISRAISAPQTLEPWVETGKVPVEGWSNQDSAAKVGV
Ga0187766_1055136713300018058Tropical PeatlandCMISRAITIPQTLEPFVEAGKIPAEGWSNPEATLKLGV
Ga0187765_1075342313300018060Tropical PeatlandCMISRAITVPQTLEPTVETAKLPVEGWHEQDADVKIGV
Ga0187784_1012007843300018062Tropical PeatlandSEEHREMGLGLLRRAKAVCMISRAITIPQTLEPTVEVVKVPVEGWNNQDATVKLGA
Ga0187793_129671133300019241PeatlandRKAKAVCLISRVITVPQTFEPRVEAGKMPPEGWAEDSVVKLGA
Ga0187796_156023233300019264PeatlandRRAKAVCMISRAITVPQTLEPVVETVKVPVEGWADHDATVKLGA
Ga0187798_127492313300019275PeatlandGLLRRAKAMCMISRAITVPQTLEAAVDVVKVPVEGWNNQDATVKLGA
Ga0187800_125264633300019278PeatlandLLRRTKSVCMISRAITVPQVLEPIVETVKTPVEGWSTQDAALKVGV
Ga0187800_137423813300019278PeatlandKLGCMISRAITVPQTLEPCVEAGKVPVEGWSSTDAELKIGV
Ga0187800_142423813300019278PeatlandEEQREVGLGLLRRAKALCMISRAITVPQTLEPTVETVKVPVEGWTDQDATVKLGA
Ga0210403_1141906713300020580SoilRESGMALLRKAKAACLISRAISVPQTMEPRVETGKVPVEGWSNEGATVEVGV
Ga0210395_1061885013300020582SoilGLNLLRRAKSVCMISRAITVPQTLEPVVETVKLPVEGWVGQEAVVKLGV
Ga0210395_1108639913300020582SoilLLRKAKAVCMISRAITVPQTLEPTVETGKVPVEGWSNQDAVVKLGV
Ga0210400_1086260113300021170SoilLRESGMALLRKAKAACLISRAISVPQTMEPRVETGKVPVEGWSNEGATVEVGV
Ga0210391_1070755413300021433SoilSSEDMCEAGLGLLRRTKALCMISRAISVPQTMEPTVETGKVPVEGWSQQDADVNLGA
Ga0210402_1057907413300021478SoilACMISRAITVPQTLEPTVESIKMPAEGWSNQDAVVKLGV
Ga0224547_105536913300023255SoilMISRALSVPQTLEPTVESDKMPVEGWSNHDAGMKIGV
Ga0207692_1024731833300025898Corn, Switchgrass And Miscanthus RhizosphereKTKAVCMISRAITVPQTLEPGVETGKVPVEGWNNQDAGVKLLV
Ga0207664_1114367333300025929Agricultural SoilSRAITVPQTLEAVVEAVRVPVEGWANDDAVVKLGV
Ga0207664_1131304813300025929Agricultural SoilVCMISRAITVPQTMEPAVETVKVPVEGWSNDDAAVKVGV
Ga0207665_1038946513300025939Corn, Switchgrass And Miscanthus RhizosphereRTKSVCMISRAITVPQTMEPTVETIKVPVEGWDNEDAVVKLGV
Ga0207780_108878713300027313Tropical Forest SoilLLRKTKSACMISRAITVPQTMEPCVETGKVPVEGWSNLDSVVKLGV
Ga0209580_1031775833300027842Surface SoilGLTLLRRTKSVCMISRAITVPQTMEPAVETVKVPVEGWSNDDAVVKLGV
Ga0209580_1054143913300027842Surface SoilTVQSEDLCEAGLNLLRRAKSVCMISRAITVPQTLEPVVETVKLPVEGWVGQDAVVKLGV
Ga0209465_1054664713300027874Tropical Forest SoilAGLTLLRRVKSVCMISRAITVPQTLEPTVESVKIPVEGWTNQEVVAKLGV
Ga0209067_1063948123300027898WatershedsGLALLRKAKAQCMISRAITVPQTLETYVEAGKVPVEGWSNQDVEKVGV
Ga0209583_1043545313300027910WatershedsEEQREAGLALLRRTKQLCMISRAITVPQTLEPAVETGKVPVEGWTNQESAVKLGV
Ga0209698_1094909013300027911WatershedsEAGLTLLRRTKSGCMISRAITVPQTMEPIVESVKMPVEGWSNQDTAVKLGV
Ga0265336_1010624833300028666RhizosphereCMISRAITVPQTLEPSVETGKVPVEGWNNQDVAVKVGV
Ga0265340_1025284533300031247RhizosphereAGLNLLRKTKAVCMISRAITVPQTLEPTVETGKVPVEGWNNQDAAVKLGV
Ga0318542_1047368923300031668SoilMCEAGLALLRRAKSICMISRAITVPQTMEPTVETVKLPVEGWSNQDAAVKIGV
Ga0318561_1045227423300031679SoilCMISRAITVPQTLEPTVESVKIPVEGWTNQEVVAKLGV
Ga0307478_1020056533300031823Hardwood Forest SoilMISRAITVPQTLEATVEAVKMPVEGWAVQETAKLGV
Ga0306921_1048533613300031912SoilDQIEAGLTLLRRAKSVCMISRAITVPQTLEPTVESVKIPVEGWTNQEVVAKLGV
Ga0310916_1047525113300031942SoilAGLTLLRRAKSVCMISRAITVPQTLEPTVESVKIPVEGWTNQEVVAKLGV
Ga0306926_1083591333300031954SoilTKSVCMISRAITVPQTLEPSVESVKIPVEGWTSQDTVVKLGV
Ga0306924_1054533133300032076SoilLLRRAKSVCMISRAITVPQTLEPTVESVKIPVEGWTNQEVVAKLGV
Ga0306924_1227680223300032076SoilLNLLRRTKSVCMVSRAITVPQTLEPTVETAKVPVEGWSAQDMEVKPGV
Ga0335085_1055512833300032770SoilGLTLLRRAKSVCMISRAITVPQTLEPAVETVKVPVEGWVDEAAEAKIGV
Ga0335085_1204811713300032770SoilTLLRRTKSVCMISRAITVPQTLEPSVESVKMPVEGWTNQDTVVKLGV
Ga0335080_1070637413300032828SoilCMISRAITVPQTMEPLVESVKLPVEGWINQDAVVKIGV
Ga0335070_1063890313300032829SoilRTKSVCMISRAITVPQTMEPMVESVKLPVEGWTNQDAVVKIGV
Ga0335083_1031871313300032954SoilCLISRAITVPQTLEPAVETIKIPVEGWANQDAAVKVGV
Ga0310914_1165413713300033289SoilIEAGLRLLRRTQSGCMISRAITVPQTMEATVESMKMPVAGWTGRDAAAKLDV


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