Metagenome / Metatranscriptome Family F101837

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F101837
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	71 residues
Representative Sequence	VSSDERPGRPQKGEWNDGEFESFLEEIAPALETSVGRLGVAGSLGSRSQIVDPSKLVLVWPEISDRIVEELR
Number of Associated Samples	77
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	75.25 %
% of genes near scaffold ends (potentially truncated)	24.51 %
% of genes from short scaffolds (< 2000 bps)	82.35 %
Associated GOLD sequencing projects	69
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.35

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (99.020 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere (17.647 % of family members)
Environment Ontology (ENVO)	Unclassified (47.059 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (35.294 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 32.00% β-sheet: 0.00% Coil/Unstructured: 68.00%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.35
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.35
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF14332	DUF4388	65.69
PF03259	Robl_LC7	7.84
PF13432	TPR_16	2.94
PF03705	CheR_N	1.96
PF13414	TPR_11	0.98
PF00072	Response_reg	0.98
PF01339	CheB_methylest	0.98
PF04973	NMN_transporter	0.98
PF00953	Glycos_transf_4	0.98
PF01739	CheR	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG2018	Predicted regulator of Ras-like GTPase activity, Roadblock/LC7/MglB family	Signal transduction mechanisms [T]	7.84
COG1352	Methylase of chemotaxis methyl-accepting proteins	Signal transduction mechanisms [T]	5.88
COG2201	Chemotaxis response regulator CheB, contains REC and protein-glutamate methylesterase domains	Signal transduction mechanisms [T]	1.96
COG0472	UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase	Cell wall/membrane/envelope biogenesis [M]	0.98
COG2226	Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG	Coenzyme transport and metabolism [H]	0.98
COG3201	Nicotinamide riboside transporter PnuC	Coenzyme transport and metabolism [H]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	99.02 %
Unclassified	root	N/A	0.98 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	99.02 %
Unclassified	root	N/A	0.98 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	99.02 %
Unclassified	root	N/A	0.98 %

Name	Rank	Taxonomy	Distribution
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	91.18 %
Unclassified	root	N/A	0.98 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	90.20 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.98 %
Unclassified	root	N/A	0.98 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	47.06 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.98 %
Unclassified	root	N/A	0.98 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	47.06 %
Sphingobacteriia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia	0.98 %
Unclassified	root	N/A	0.98 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	47.06 %
Sphingobacteriales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales	0.98 %
Unclassified	root	N/A	0.98 %

Name	Rank	Taxonomy	Distribution
unclassified Gemmatimonadaceae	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae	44.12 %
Gemmatimonas	genus	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas	0.98 %
Sphingobacteriales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales	0.98 %
Unclassified	root	N/A	0.98 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	44.12 %
Gemmatimonas	genus	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas	0.98 %
Sphingobacteriales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales	0.98 %
Unclassified	root	N/A	0.98 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2199352024\|deeps__Contig_81811	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	584	Open in IMG/M
2199352024\|deeps__Contig_81812	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	584	Open in IMG/M
2199352024\|deeps_contig96095.56692	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1690	Open in IMG/M
3300003347\|JGI26128J50194_1006722	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	749	Open in IMG/M
3300004114\|Ga0062593_100111858	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	1962	Open in IMG/M
3300004114\|Ga0062593_102236554	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	613	Open in IMG/M
3300004156\|Ga0062589_100133713	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	1664	Open in IMG/M
3300004156\|Ga0062589_100845062	All Organisms → cellular organisms → Bacteria	835	Open in IMG/M
3300004463\|Ga0063356_101114688	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	1138	Open in IMG/M
3300004463\|Ga0063356_103160211	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	710	Open in IMG/M
3300004463\|Ga0063356_105083035	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	565	Open in IMG/M
3300004480\|Ga0062592_101396690	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	666	Open in IMG/M
3300004643\|Ga0062591_101246492	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	727	Open in IMG/M
3300005293\|Ga0065715_10113740	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	2477	Open in IMG/M
3300005293\|Ga0065715_10847716	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	593	Open in IMG/M
3300005327\|Ga0070658_10116293	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	2219	Open in IMG/M
3300005338\|Ga0068868_102199597	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	525	Open in IMG/M
3300005344\|Ga0070661_101152991	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	647	Open in IMG/M
3300005364\|Ga0070673_100703389	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	928	Open in IMG/M
3300005468\|Ga0070707_100214898	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	1874	Open in IMG/M
3300005468\|Ga0070707_100828407	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	889	Open in IMG/M
3300005530\|Ga0070679_100874876	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	842	Open in IMG/M
3300005563\|Ga0068855_101460340	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	703	Open in IMG/M
3300005564\|Ga0070664_100610039	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1012	Open in IMG/M
3300006169\|Ga0082029_1056445	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	893	Open in IMG/M
3300006876\|Ga0079217_10015032	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	2605	Open in IMG/M
3300006876\|Ga0079217_10781458	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	659	Open in IMG/M
3300006876\|Ga0079217_11219490	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	574	Open in IMG/M
3300006950\|Ga0075524_10025910	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	2332	Open in IMG/M
3300010036\|Ga0126305_10129033	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	1553	Open in IMG/M
3300010038\|Ga0126315_10493920	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	780	Open in IMG/M
3300010040\|Ga0126308_10549743	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	784	Open in IMG/M
3300010041\|Ga0126312_10267916	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1202	Open in IMG/M
3300010044\|Ga0126310_10792337	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	728	Open in IMG/M
3300010166\|Ga0126306_10993363	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	683	Open in IMG/M
3300011333\|Ga0127502_10577344	All Organisms → cellular organisms → Bacteria	556	Open in IMG/M
3300012042\|Ga0136627_1014660	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	2952	Open in IMG/M
3300012092\|Ga0136621_1116039	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1083	Open in IMG/M
3300012183\|Ga0136624_1229984	All Organisms → cellular organisms → Bacteria	586	Open in IMG/M
3300012487\|Ga0157321_1024801	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	575	Open in IMG/M
3300012680\|Ga0136612_10042520	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	2282	Open in IMG/M
3300012960\|Ga0164301_11533418	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	550	Open in IMG/M
3300012961\|Ga0164302_11258289	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	595	Open in IMG/M
3300015194\|Ga0167666_1000077	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	32505	Open in IMG/M
3300015194\|Ga0167666_1000821	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	11270	Open in IMG/M
3300015194\|Ga0167666_1008113	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	3284	Open in IMG/M
3300015371\|Ga0132258_10991841	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	2122	Open in IMG/M
3300015374\|Ga0132255_104833670	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	571	Open in IMG/M
3300017695\|Ga0180121_10001853	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	8902	Open in IMG/M
3300017789\|Ga0136617_10485992	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	983	Open in IMG/M
3300018422\|Ga0190265_10115566	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	2551	Open in IMG/M
3300018466\|Ga0190268_12308122	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	507	Open in IMG/M
3300018481\|Ga0190271_11327454	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	839	Open in IMG/M
3300018920\|Ga0190273_11777751	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	560	Open in IMG/M
3300025324\|Ga0209640_10103657	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	2452	Open in IMG/M
3300025891\|Ga0209585_10020621	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	2389	Open in IMG/M
3300025893\|Ga0207682_10533092	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	555	Open in IMG/M
3300025918\|Ga0207662_11135283	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales	556	Open in IMG/M
3300025920\|Ga0207649_10133264	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	1691	Open in IMG/M
3300025921\|Ga0207652_11098452	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	696	Open in IMG/M
3300025922\|Ga0207646_10255214	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	1585	Open in IMG/M
3300025922\|Ga0207646_10700204	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	906	Open in IMG/M
3300025930\|Ga0207701_11160418	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	638	Open in IMG/M
3300025933\|Ga0207706_10610555	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	936	Open in IMG/M
3300025945\|Ga0207679_11155783	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	710	Open in IMG/M
3300026023\|Ga0207677_10767935	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	860	Open in IMG/M
3300026078\|Ga0207702_12468672	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	506	Open in IMG/M
3300026089\|Ga0207648_11296969	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	684	Open in IMG/M
3300026116\|Ga0207674_11698455	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	599	Open in IMG/M
3300027360\|Ga0209969_1006761	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	1615	Open in IMG/M
3300027637\|Ga0209818_1020464	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1433	Open in IMG/M
3300027637\|Ga0209818_1126655	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	698	Open in IMG/M
3300027638\|Ga0208612_1082469	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	856	Open in IMG/M
3300031455\|Ga0307505_10061610	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	1666	Open in IMG/M
3300031548\|Ga0307408_100137381	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	1914	Open in IMG/M
3300031716\|Ga0310813_10426588	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	1146	Open in IMG/M
3300031716\|Ga0310813_11905091	All Organisms → cellular organisms → Bacteria	560	Open in IMG/M
3300031731\|Ga0307405_10433017	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	1038	Open in IMG/M
3300031731\|Ga0307405_10753399	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	811	Open in IMG/M
3300031824\|Ga0307413_11926156	All Organisms → cellular organisms → Bacteria	531	Open in IMG/M
3300031852\|Ga0307410_11934417	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	525	Open in IMG/M
3300031901\|Ga0307406_10400621	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	1088	Open in IMG/M
3300031901\|Ga0307406_11721721	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	556	Open in IMG/M
3300031908\|Ga0310900_10678505	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	823	Open in IMG/M
3300031911\|Ga0307412_10167659	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	1639	Open in IMG/M
3300031911\|Ga0307412_10908518	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	772	Open in IMG/M
3300031911\|Ga0307412_11625657	All Organisms → cellular organisms → Bacteria	590	Open in IMG/M
3300031944\|Ga0310884_10720875	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	605	Open in IMG/M
3300031995\|Ga0307409_100090647	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	2503	Open in IMG/M
3300031995\|Ga0307409_102083329	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	597	Open in IMG/M
3300032002\|Ga0307416_100712958	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	1093	Open in IMG/M
3300032002\|Ga0307416_100718139	All Organisms → cellular organisms → Bacteria	1090	Open in IMG/M
3300032002\|Ga0307416_100764365	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	1060	Open in IMG/M
3300032005\|Ga0307411_10525393	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1005	Open in IMG/M
3300032075\|Ga0310890_11631363	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	534	Open in IMG/M
3300032126\|Ga0307415_100252941	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1433	Open in IMG/M
3300032126\|Ga0307415_102324409	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	526	Open in IMG/M
3300032421\|Ga0310812_10173926	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	925	Open in IMG/M
3300032421\|Ga0310812_10519052	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	535	Open in IMG/M
3300033412\|Ga0310810_10039193	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas	5786	Open in IMG/M
3300033412\|Ga0310810_10064104	All Organisms → cellular organisms → Bacteria	4449	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	58.82%
Host-Associated	Host-Associated	41.18%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	50.00%
Plants	Host-Associated → Plants	41.18%
Aquatic	Environmental → Aquatic	8.82%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	50.00%
Rhizosphere	Host-Associated → Plants → Rhizosphere	25.49%
Rhizoplane	Host-Associated → Plants → Rhizoplane	15.69%
Freshwater	Environmental → Aquatic → Freshwater	8.82%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	42.16%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	17.65%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	11.76%
Ice	Environmental → Aquatic → Freshwater → Ice	7.84%
Loam	Environmental → Terrestrial → Soil → Loam	7.84%
Soil	Host-Associated → Plants → Rhizosphere → Soil	7.84%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.92%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	25.49%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	17.65%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	11.76%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	10.78%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	7.84%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	7.84%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.86%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.92%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.94%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	1.96%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.98%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.98%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	17.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	12.75%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	6.86%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	5.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	5.88%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	5.88%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	4.90%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	4.90%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.94%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	2.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.94%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	1.96%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.96%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	1.96%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.98%
Polar Desert	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert	0.98%
Termite Nest	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest	0.98%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.98%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.98%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	0.98%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.98%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2199352024	Bare-fallow DEEP SOIL	Environmental	Open in IMG/M
3300003347	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Rhizosphere soil Co-N PM	Host-Associated	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005327	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG	Host-Associated	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300006169	Termite nest microbial communities from Madurai, India	Environmental	Open in IMG/M
3300006876	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200	Environmental	Open in IMG/M
3300006950	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost154B-one	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300011333	Cornfield soil microbial communities from Stanford, California, USA - CI-CA-CRN metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012042	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ489 (22.06)	Environmental	Open in IMG/M
3300012092	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ445A (23.06)	Environmental	Open in IMG/M
3300012183	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ469 (22.06)	Environmental	Open in IMG/M
3300012487	Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.4.old.130510	Host-Associated	Open in IMG/M
3300012680	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ224A (23.06)	Environmental	Open in IMG/M
3300012682	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ223 (23.06)	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300015194	Arctic soil microbial communities from a glacier forefield, Rabots glacier, Tarfala, Sweden (Sample Rb1c, glacier snout)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017695	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ540 (21.06) (version 2)	Environmental	Open in IMG/M
3300017789	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ322 (21.06)	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300018920	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 IS	Environmental	Open in IMG/M
3300025324	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_1 (SPAdes)	Environmental	Open in IMG/M
3300025891	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost154B-one (SPAdes)	Environmental	Open in IMG/M
3300025893	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027360	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 PM (SPAdes)	Host-Associated	Open in IMG/M
3300027637	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200 (SPAdes)	Environmental	Open in IMG/M
3300027638	Polar desert microbial communities from Antarctic Dry Valleys - UQ889 (SPAdes)	Environmental	Open in IMG/M
3300031455	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 23_S	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300031901	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2	Host-Associated	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031911	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1	Host-Associated	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032005	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1	Host-Associated	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300032421	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NN3	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
deeps_01369830	2199352024	Soil	MSRERPERPQKGEWNDGEFESFLAELTPALENSVGRLGVAGSLGNRAAVVDAEKMILSWPDLSDRIIEELR
deeps_01369850	2199352024	Soil	MTRERPERPQKGEWNDGEFESFLAELTPALENSVGRLGVAGALGNRETVVDAEKMIIAWPDAADRIIEELR
deeps_00805350	2199352024	Soil	MNRERPGPPXXGEWNDGEFESFLADITPALETSVGRLGVAGSLGNRSSVIDVEKMILAWPDAADRIIEELR
JGI26128J50194_10067222	3300003347	Arabidopsis Thaliana Rhizosphere	VDSSERQSRPQKGEWNDGEFESFLADIQPALETSVGRLGVAGALGNRPQAIDPSKLVLTWPDVADRIVEELR*
Ga0062593_1001118583	3300004114	Soil	VNSSERQGRPQKGEWNDGEFESFLADIQPALETSVGRLGVAGSLGNRPQPIDPSKLVLTWPDVADRIVEELR*
Ga0062593_1022365541	3300004114	Soil	VSSNERPGRPQKGQWNDGEFESFLEEITPALETSVGRLGVAGSLGSRSQIVDPGKLVLVWPEI
Ga0062589_1001337132	3300004156	Soil	VSSGERPSRPQKGEWNDGEFESFLEEITPALETSVGRLGVAGSLGARSNTVDPGKLILMWPDIADRIVEELR*
Ga0062589_1008450622	3300004156	Soil	RPQKGEWNDGEFESFLEEIAPALETSVGRLGVAGSLGSRSNIVDPAKLILVWPEIADRIVEEMR*
Ga0063356_1011146883	3300004463	Arabidopsis Thaliana Rhizosphere	LSSSQRQGRPGKGEWNDGEFESFLAEIAPALESSVGRLGVAGSLGNQPQTIDTSKLILTWPDISDRIVEEL
Ga0063356_1031602112	3300004463	Arabidopsis Thaliana Rhizosphere	VNSSERHGRPVKGERNDGEFESFLADIQPALETSVGRLGVAGALGNRSQSIDPAKLVFNWPDIVDRISEDLR*
Ga0063356_1050830352	3300004463	Arabidopsis Thaliana Rhizosphere	LSSSDRQRRPQKGEWNDGEFESFLAEITPALESSVGRLGVAGSLGNQGQTVDPSRLIITWPDITDRIVEELR*
Ga0062592_1013966901	3300004480	Soil	VSSDERQTRPQKGEWNDGEFESFLEEIAPALETSVGRLGVAGSLGSRSNIVDPAKLILVWPEIADRI
Ga0062591_1012464922	3300004643	Soil	VSSDERQTRPQKGEWNDGEFESFLEEIAPALETSVGRLGVAGSLGSRSNIVDPAKLILVWPEIADRIVEEMR*
Ga0065715_101137402	3300005293	Miscanthus Rhizosphere	VSSNERPGRPQKGQWNDGEFESFLEEITPALETSVGRLGVAGSLGSRSQIVDPGKLVLVWPEISNRIIEELR*
Ga0065715_108477162	3300005293	Miscanthus Rhizosphere	SPSERPNRPQKGEWNDGEFESCLEEIAPTLETSVGRLGVAGSLGARSTAVDPGKLILVWPDISDRIVEELR*
Ga0070658_101162932	3300005327	Corn Rhizosphere	MNRERPGPPKKGEWNDGEFESFLADIAPALETSVGRLGVAGSLGSRTPVIDVEKMILGWPDVADRIIEELR*
Ga0068868_1021995972	3300005338	Miscanthus Rhizosphere	VSSNERPGRPQKGQWNDGEFESFLEDITPALETSVGRLGVAGSLGNRSQVVDPAKLVLVWPEISSRIVEELR*
Ga0070661_1011529911	3300005344	Corn Rhizosphere	NDGEFESFLEEIAPTLETSVGRLGVAGSLGARSTAVDPGKLILVWPDISDRIVEELR*
Ga0070673_1007033891	3300005364	Switchgrass Rhizosphere	VSSNERPGRPQKGQWNDGEFESFLEDITPALETSVGRLGVAGSLGNRSQVVDPAKLVLVWPE
Ga0070707_1002148982	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	VNSRERKGPPEKGEWNDGEFESFLADITPSLETSVGRLGVAGSLGNRTSMVDPARLVLTWPDITDRIVEELR*
Ga0070707_1008284072	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	VSSDERPGRPQKGEWNDGEFESFLEEIAPALETSVGRLGVAGSLGSRSQIVDPSKLVLVWPEISDRIVEELR*
Ga0070679_1008748762	3300005530	Corn Rhizosphere	VSSGERPSRPQKGEWNDGEFESFLEEITPALETSVGRLGVAGSLGARSNAVDPGKLILVWPDIADRIVEELR*
Ga0068855_1014603402	3300005563	Corn Rhizosphere	GEWNDGEFESFLADITPTLETSVGRLGVAGSLGSRSPVIDVEKMILGWPDVSDRIIEELR
Ga0070664_1006100392	3300005564	Corn Rhizosphere	VSPSERPNRPQKGEWNDGEFESFLEEIAPTLETSVGRLGVAGSLGARSTAVDPGKLILVWPDISDRIVEELR*
Ga0082029_10564452	3300006169	Termite Nest	MGIEKHGRPQKGEWNDGEFESFLAEIAPALENSVGRLGVAGALGARQPVIDPEKLILQWPEVSDRIIEEMR*
Ga0079217_100150322	3300006876	Agricultural Soil	MSKNRAGRPEKGEWNDGEFESFLAEIAPALEHSVGRLGVAGSLGRRTPAVDPEKIILIWSDVADRIVEELR*
Ga0079217_107814582	3300006876	Agricultural Soil	MIFGERQGRPEKGEWNDGEFESFLAEIAPALEQGVGRLGVAGSLGSRTPAMDPEKIIASWPDVADRIIEELR*
Ga0079217_112194902	3300006876	Agricultural Soil	MLSDRPGRPQKGEWNDGEFESFLAEIAPALENSVGRLGVAGALGARTPAVDPDKFVLVWPDVTDRILDELR*
Ga0075524_100259102	3300006950	Arctic Peat Soil	MNSERPGPPQKGEWNDGEFESFLADIAPALETSVGRLGVAGSLGNRTPVIDVEKMILAWPDVSDRIIEELR*
Ga0126305_101290334	3300010036	Serpentine Soil	VISRERPRPDKGEWNDGEFESFLAEIAPALEQGVGRLGVAGSLGSRTQVVDPEKLILSWPDVTDRIIEEMR*
Ga0126315_104939201	3300010038	Serpentine Soil	VNSGERQSRPQKGEWHDGEFESFLADITPALETSVGRLGVAGSLGNRPQPVDQSKLIMTWPDISARIIEELR*
Ga0126308_105497431	3300010040	Serpentine Soil	VKGQWNDGEFESFLEEIAPALETSVGRLGVAGSLGGSRTSIVDPAKLVLVWPDIADRIVEELR*
Ga0126312_102679162	3300010041	Serpentine Soil	VKGQWNDGEFESFLEEIAPALETSVGRLGVAGSLGGGRTSIVDPAKLILVWPDIADRIVEELR*
Ga0126310_107923371	3300010044	Serpentine Soil	MISGERSGRPEKGEWNDGEFESFLAEIAPALAQGVGRLGVAGSLGSRTPVIDPDKIITSWPEVADRIIEELR*
Ga0126306_109933632	3300010166	Serpentine Soil	LGALTTGGAQSRDQGGAWQVSSNERQSRPQKGEWNDGEFESFLIDIQPALETSVGRLGVAGSLGNRPQPIDPAKLVLTWPDIADRIAEDLR*
Ga0127502_105773442	3300011333	Soil	LASSDRPGRPQKGEWNDGEFESFLAEIAPALETSVGRLGVAGSLVNRVQLVDPAKLVLTWPDISDRVLEELR*
Ga0136627_10146602	3300012042	Polar Desert Sand	MFKERPGRPDKGEWNDGEFESFLAEIAPALENSVGRLGVAGSLGLRTPLVDPEKLILSWPDVADRVIEELR*
Ga0136621_11160392	3300012092	Polar Desert Sand	HKGEWNDGEFESFLDEIAPTLEQSVGRLGVAGHLGTRGSQGVIANLIFAWPDVADRIIEELR*
Ga0136624_12299842	3300012183	Polar Desert Sand	GRPDKGEWNDGEFESFLAEIAPALENSVGRLGVAGSLGLRTPLVDPEKLILSWPDVADRVIEELR*
Ga0157321_10248012	3300012487	Arabidopsis Rhizosphere	VSSNERPGRPQKGQWNDGEFESFLEDITPALETSVGRLGVAGSLGSRSQIVDPGKLVLVWPEISNRIIEELR*
Ga0136612_100425202	3300012680	Polar Desert Sand	MAEDRMARPQKGEWNDGEFESFLDEIAPTLEQSVGRLGVAGHLGTRGTQGVIASLIFAWPEVADRIIEELR*
Ga0136611_100797312	3300012682	Polar Desert Sand	MTEDRTARPQKGEWNDGEFESFLDEIAPTLEQSVGRLGVAGHLGTRGTQGVIASLIFAWPEVADRIIEELR*
Ga0164301_115334181	3300012960	Soil	MNKERQGPPKKGEWNDGEFESFLADITPALETSVGRLGVAGSLGSRSPVIDVEKMILAWPDVADRIIEELR*
Ga0164302_112582892	3300012961	Soil	PPKKGEWNDGEFESFLADIAPALETSVGRLGVAGSLGSRSPVIDVEKMILAWPDVADRIIEELR*
Ga0167666_100007722	3300015194	Glacier Forefield Soil	MNRERPGRPTKGEWNDGEFESFIADLTPALETSVGRLGVAGSLGNRSSVIDVEKMILTWPDTGDRIVEELR*
Ga0167666_10008219	3300015194	Glacier Forefield Soil	MSERLGRPTKGEWNDGEFESFLAELTPALETSVGRLGVAGSLGNRTPVIDVDKMVLVWPDAADRIVEEMR*
Ga0167666_10081134	3300015194	Glacier Forefield Soil	MNRDGPGRPQKGEWNDGEFESFLAELTPALETSVGRLGVAGSLGSRSPVIDVEKMILAWPDAADRIAEELR*
Ga0132258_109918412	3300015371	Arabidopsis Rhizosphere	VSTDERPARPQKGEWNDGEFESFLEEIAPTLETSVGRLGVAGSLDGRHQVVDPAKLVLIWPDIADRIVEELR*
Ga0132255_1048336702	3300015374	Arabidopsis Rhizosphere	LVDVTDGDRPGRPQKGERNEGEFEAFLSEIAPTLEQSVGRLGVAGALDTRISFIDPDKLILPWPEISDRIIEELR*
Ga0180121_100018539	3300017695	Polar Desert Sand	MQKRDKDEWSDKEFESFLAEITPALENSVGRLGVAGSVGSRSGTVDDDKTILAWPDISDRIIEEMR
Ga0136617_104859922	3300017789	Polar Desert Sand	MAEDRGQRPQKGEWNDGEFESFLDEIAPSLEQSVGRLGVAGHLGKRGMRDVLANLIVPWPDVADRIIEELR
Ga0190265_101155663	3300018422	Soil	MPTERGRPQKGEWNDGEFESFLEDIAPALEHSVGRLGVAGALGTRTPVVDPEKMILFWLDVTDRIIEDLH
Ga0190268_123081221	3300018466	Soil	MIFGERNGRPEKGEWNDGEFESFLAEIAPALEQGVGRLGVAGSLGNRTAAMDPDKIITSWPEVADRIIEELR
Ga0190271_113274541	3300018481	Soil	MISGERSGRPEKGEWNDGEFESFLSEIAPALAQGVGRLGVAGSLGSRTQPMDPEKIISSWPEVADRIIEELR
Ga0190273_117777512	3300018920	Soil	MIFGERSGRPEKGEWNDGEFESFLAEIAPALEQGVGRLGVAGSLGSRTPVIDPEKIITSWPDVADRIIEELR
Ga0209640_101036574	3300025324	Soil	MLKDRTGPPEKGEWNDGEFESFLAEIAPALETSVGRLGVAGALGIRAGSVDPEKLILSWPEVADRIIEELR
Ga0209585_100206214	3300025891	Arctic Peat Soil	MNSERPGPPQKGEWNDGEFESFLADIAPALETSVGRLGVAGSLGNRTPVIDVEKMILAWPDVSDRIIEELR
Ga0207682_105330922	3300025893	Miscanthus Rhizosphere	VSSNERPGRPQKGQWNDGEFESFLEEITPALETSVGRLGVAGSLGSRSQIVDPGKLVLVWPEISNRIIEELR
Ga0207662_111352831	3300025918	Switchgrass Rhizosphere	VSSNERPGRPQKGQWNDGEFESFLEDITPALETSVGRLGVAGSLGNRSQVVDPAKLVLVWPEISSRIVEELR
Ga0207649_101332642	3300025920	Corn Rhizosphere	NAGMNRERPGPPKKGEWNDGEFESFLADIAPALETSVGRLGVAGSLGSRTPVIDVEKMILGWPDVADRIIEELR
Ga0207652_110984521	3300025921	Corn Rhizosphere	GERPSRPQKGEWNDGEFESFLEEITPALETSVGRLGVAGSLGARSNAVDPGKLILVWPDIADRIVEELR
Ga0207646_102552142	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	VNSRERKGPPEKGEWNDGEFESFLADITPSLETSVGRLGVAGSLGNRTSMVDPARLVLTWPDITDRIVEELR
Ga0207646_107002042	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	VSSDERPGRPQKGEWNDGEFESFLEEIAPALETSVGRLGVAGSLGSRSQIVDPSKLVLVWPEISDRIVEELR
Ga0207701_111604182	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MISGERSGRPEKGEWNDGEFESFLAEIAPSLAQGVGRLGVAGSLGSRTQPVDPEKIISSWPEVADRIIEELR
Ga0207706_106105553	3300025933	Corn Rhizosphere	VSSNERPGRPQKGQWNDGEFESFLEEITPALETSVGRLGVAGSLGSRSQIVDPGKLVLVWPEISNRIIDA
Ga0207679_111557832	3300025945	Corn Rhizosphere	VSPSERPNRPQKGEWNDGEFESFLEEIAPTLETSVGRLGVAGSLGARSTAVDPGKLILVWPDISDRIVEELR
Ga0207677_107679353	3300026023	Miscanthus Rhizosphere	VSSNERPGRPQKGQWNDGEFESFLEDITPALETSVGRLGVAGSLGNRSQVVDPAKLVLV
Ga0207702_124686722	3300026078	Corn Rhizosphere	MTRERPDRPQKGEWNDGEFESFLADLTPTLENSVGRLGVAGSLGNRAAVVDGEKMIIAWPDPSDRIIEELR
Ga0207648_112969691	3300026089	Miscanthus Rhizosphere	VSSNERPGRPQKGQWNDGEFESFLEEITPALETSVGRLGVAGSLGSRSQILDPGKLVLVRPEISNRIIEELR
Ga0207674_116984552	3300026116	Corn Rhizosphere	VSSGERPSRPQKGEWNDGEFESFLEEIAPTLETSVGRLGVAGSLGARSNAVDPGKLILVGPDISD
Ga0209969_10067612	3300027360	Arabidopsis Thaliana Rhizosphere	VDSSERQSRPQKGEWNDGEFESFLADIQPALETSVGRLGVAGALGNRPQAIDPSKLVLTWPDVADRIVEELR
Ga0209818_10204642	3300027637	Agricultural Soil	MSKNRAGRPEKGEWNDGEFESFLAEIAPALEHSVGRLGVAGSLGRRTPAVDPEKIILIWSDVADRIVEELR
Ga0209818_11266552	3300027637	Agricultural Soil	MIFGERQGRPEKGEWNDGEFESFLAEIAPALEQGVGRLGVAGSLGSRTPAMDPEKIIASWPDVADRIIEELR
Ga0208612_10824693	3300027638	Polar Desert	MFKERPGRPDKGEWNDGEFESFLAEIAPALENSVGRLGVAGSLGSRTPSVDPEKLILSWPDVADRVIEELR
Ga0307505_100616102	3300031455	Soil	MFKDRPGRPQKGEWNDGEFESFLAEIAPALENSVGRLGVAGSLGSRTQSVDPEKLILSWPDVGDRVIEELR
Ga0307408_1001373815	3300031548	Rhizosphere	VSSNERQSRPQKGEWNDGEFESFLIDIQPALETSVGRLGVAGSLGNRPQSIDPSKLVLTWPDIADRIAEDLR
Ga0310813_104265882	3300031716	Soil	MNRERPGPPKKGEWNDGEFESFLADITPALETSVGRLGVAGSLGSRTPVIDVEKMILTWPEVSDRIIEELR
Ga0310813_119050912	3300031716	Soil	VSSNERPGRPLKGQWNDGEFESFLEDITPALETSVGRLGVAGSLGNRSQVVDPAKLVLIWPEISSRIVEELR
Ga0307405_104330173	3300031731	Rhizosphere	MFNDRPNRPQKGEWNDGEFESFLAEIAPTLENSVGRLGVAGALGSRTPIIDPEKLIFFWPETTDRIIEEMR
Ga0307405_107533992	3300031731	Rhizosphere	VTSSERQGRPQKGEWNDGEFESFLADIQPALETSVGRLGVAGSLGNRPQPIDPSKLVLTWPDVADRIVEELR
Ga0307413_119261561	3300031824	Rhizosphere	RQGRPEKGEWNDGEFESFLADIQPALETSVGRLGVAGSLGNRPQPIDPSKLVLTWPDVADRIVEELR
Ga0307410_119344171	3300031852	Rhizosphere	WRWSLAVTSSERQGRPEKGEWNDGEFESFLADIQPALETSVGRLGVAGSLGNRPQPIDPSKLVLTWPDVADRIVEELR
Ga0307406_104006212	3300031901	Rhizosphere	MFNDRPNRPQKGEWNDGEFESFLAEIAPTLENSVGRLGVAGALGSRTPIIDPEKLIFFWPETIDRIIEEMR
Ga0307406_117217211	3300031901	Rhizosphere	VNSSERQGRPQKGEWNDGEFESFLAEIAPALEQGVGRLGVAGSLGSRTPVIDPEKIITSWPDV
Ga0310900_106785052	3300031908	Soil	MISGERSGRPEKGEWNDGEFESFLSEIAPALAQGVGRLGVAGSLGSRTQPMDPEKIISSWPDVADRIIEELR
Ga0307412_101676593	3300031911	Rhizosphere	LSSSDRQRRPQKGEWNDGEFESFLAEITPALESSVGRLGVAGSLGSQGQTVDPSKLIITWPDITDRIVEELR
Ga0307412_109085182	3300031911	Rhizosphere	VNSSERQGRPQKGEWNDGEFESFLADIQPSLETSVGRLGVAGALGNRPQPIDQSKLVLTWPEISDRIVEDLR
Ga0307412_116256572	3300031911	Rhizosphere	SRDQGGAWQVSSNERQSRPQKGEWNDGEFESFLIDIQPALETSVGRLGVAGSLGNRPQSIDPSKLVLTWPDIADRIAEDLR
Ga0310884_107208751	3300031944	Soil	VSSNERPGRPQKGQWNDGEFESFLEDITPALETSVGRLGVAGSLGNRSQIVDPAKLVLVWPEISSRIIEELR
Ga0307409_1000906472	3300031995	Rhizosphere	VTSSERQGRPEKGEWNDGEFESFLADIQPALETSVGRLGVAGSLGNRPQPIDPSKLVLTWPDVADRIVEELR
Ga0307409_1020833291	3300031995	Rhizosphere	LSSSDRQRRPQKGEWNDGEFESFLAEITPALESSVGRLGVAGSLGNQGQTVDPSRLIITWPDITDRIVEELR
Ga0307416_1007129582	3300032002	Rhizosphere	VNSSERQGRPQKGEWNDGEFESFLADIQPSLETSVGRLGVAGALGNRPQPIDPSKLVLTWPELADRIVEDLR
Ga0307416_1007181392	3300032002	Rhizosphere	MRSGTDALSANDALMFNDRPNRPQKGEWNDGEFESFLAEIAPTLENSVGRLGVAGALGSRTPIIDPEKLIFFWPETTDRIIEEMR
Ga0307416_1007643652	3300032002	Rhizosphere	VNSSERQGRPQKGEWNDGEFESFLAEIQPSLETSVGRLGVAGALGNRPQPIDPSKLVLTWPDIADRIVEDLR
Ga0307411_105253932	3300032005	Rhizosphere	GEWNDGEFESFLAEITPALESSVGRLGVAGSLGSQGQTVDPSKLIITWPDITDRIVEELR
Ga0310890_116313632	3300032075	Soil	LSSSDRQGHPQKGEWNDGEFESFLSENAPAQAQGVGRLGVAGSLGSRTQPMDPEKIISSWPDVADRIIEELR
Ga0307415_1002529412	3300032126	Rhizosphere	VNSSERQGRPQKGEWNDGEFESFLAEIQPSLETSVGRLGVAGALGNRPQPIDQSKLVLTWPELSDRIVEDLR
Ga0307415_1023244091	3300032126	Rhizosphere	WRWSLAVTSSERQGRPQKGEWNDGEFESFLADIQPALETSVARLGVAGSLGNRPQPIDPSKLVLTWPDVADRIVEELR
Ga0310812_101739261	3300032421	Soil	NERPGRPLKGQWNDGEFESFLEDITPALETSVGRLGVAGSLGNRSQVVDPAKLVLIWPEISSRIVEELR
Ga0310812_105190521	3300032421	Soil	HSRPQKGDRNDGEFESFLAEIAPALEQSVGRLGVAGSLDTRITFIDPDKLILPWPEISDRIIEEMR
Ga0310810_100391937	3300033412	Soil	VSSNERPGRPQKGEWNDGEFESFLEDITPALETSVGRLGVAGSLGNRSQVVDPAKLVLIWPEISSRIVEELR
Ga0310810_100641042	3300033412	Soil	VSSNERPGRPLKGQWNDGEFESFLEDITPALETSVGRLGVAGSLGNRSQIVDPAKLVLVWPEISSRIVEELR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F101837

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences