Basic Information | |
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Family ID | F101831 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 102 |
Average Sequence Length | 47 residues |
Representative Sequence | MSEEARQESGGQTSSSTVLVVVLWALVLIPLLWGVYQTLTGVVALFTG |
Number of Associated Samples | 45 |
Number of Associated Scaffolds | 102 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 91.18 % |
% of genes near scaffold ends (potentially truncated) | 15.69 % |
% of genes from short scaffolds (< 2000 bps) | 79.41 % |
Associated GOLD sequencing projects | 44 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.51 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (85.294 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (32.353 % of family members) |
Environment Ontology (ENVO) | Unclassified (35.294 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (49.020 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Transmembrane (alpha-helical) | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 51.32% β-sheet: 0.00% Coil/Unstructured: 48.68% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.51 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Soil Polar Desert Polar Desert Sand Soil Soil Serpentine Soil Termite Nest Agricultural Soil Soil Soil Rock Tabebuia Heterophylla Rhizosphere Tabebuia Heterophylla Rhizosphere Populus Rhizosphere Rhizosphere |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
JGI24973J35851_10425392 | 3300002547 | Polar Desert | MSERARQEGGEQTSSSMVLVVVLWAFVLIPLLWGVYQTLTGVVALFAG |
JGI25406J46586_100130872 | 3300003203 | Tabebuia Heterophylla Rhizosphere | MSESGSQGSWVQSSSMALVVILWALVLLPLLWGVYQTLKGVVALFS* |
JGI25407J50210_101119402 | 3300003373 | Tabebuia Heterophylla Rhizosphere | MSEEARQESGGQSSSSSAVLVVVLWAMVLIPLAWGVYQTLLGVVALFTGG* |
Ga0081538_100180292 | 3300005981 | Tabebuia Heterophylla Rhizosphere | MSEESRQESGGQTSSSTVLVVVLWALVLIPLAWGVYQTLIGVVALFAGG* |
Ga0081538_103742182 | 3300005981 | Tabebuia Heterophylla Rhizosphere | MSEEARQESGGQTSSSSIVLVIVLWALVLIPLAWGVYQTLLGVVALFTGG* |
Ga0082029_13301282 | 3300006169 | Termite Nest | MSEETRQESGGQTSSSTVLAVVLWGLIPLAWGVYQTLLGVLALFAGG* |
Ga0082029_14847992 | 3300006169 | Termite Nest | MSEEARQESGGQTSSSIVLVIVLWALVLIPLAWGVYQTLLGVVALFTGG* |
Ga0079217_108259541 | 3300006876 | Agricultural Soil | MSEEARQQSGGPSSSSSTVLVVVLWALVLIPLAWGVYQTLIGVVALFAGG* |
Ga0079215_106887451 | 3300006894 | Agricultural Soil | MSEEARQESGGQTSSSSIVLVIVLWALVLIPLLWGVYQTLTGVVALFS* |
Ga0079216_115611042 | 3300006918 | Agricultural Soil | MSEEARQQSGGPSSSSSTVLVVVLWALVLIPLAWGVYQTLTGVVALFSGG* |
Ga0105679_101041292 | 3300007790 | Soil | MSEQARQESGGQTSSSSVVLVIVLWALVLIPLLWGIYQTLLGVVALFTGG* |
Ga0105679_108371702 | 3300007790 | Soil | MSEEAHQESGGQSSSSSAVLVVVLWALVLIPLAWGVYQTLTAVVALFTGG* |
Ga0105679_109198132 | 3300007790 | Soil | MSERAGQEGGGQSSSTVLVVVLWALVLIPLLWGVYQTLLGVVALFAG* |
Ga0075418_108411932 | 3300009100 | Populus Rhizosphere | MSEEARQESGRQSSSSSMFLVVVLWAMVLIPLLWGVYQTLTGVVALFTG* |
Ga0126307_100269787 | 3300009789 | Serpentine Soil | MSESELRGGQSSMVLAVVLWALVLIPLLWGIYQTLTGAVALFS* |
Ga0126307_100705262 | 3300009789 | Serpentine Soil | MSEEARQESGGQTSSSSKVLVVVLWALVLIPLAWGVYQTLTGVVALFAGG* |
Ga0126307_100738305 | 3300009789 | Serpentine Soil | MSEETRQESGGQTSSSIVLVIVLWAMVLIPLAWGVYQTLTGVVALFTGG* |
Ga0126313_101084202 | 3300009840 | Serpentine Soil | MSEEARQESGGQTSSSTVLVVVLWALVLIPLLWGVYQTLTGVVALFTG* |
Ga0126313_103227242 | 3300009840 | Serpentine Soil | MSERARQEGREQTSSSMVLVIVLWAFVLIPLLWGVYQTLTGVVALFAG* |
Ga0126313_103882652 | 3300009840 | Serpentine Soil | MSEEARQESGGQTSSSIILVIVLWALVLILLAWGVYQTLTGVVALFTGG* |
Ga0126313_104224102 | 3300009840 | Serpentine Soil | MSEEARQESGGQTSSSSIVLVIVLWALVLIPLAWGVYQTLIGVVALFTGG* |
Ga0126313_104565222 | 3300009840 | Serpentine Soil | MSEEARQESGGQTSSSSMVLVVVLWALVLIPLAWGVYQTLTGVVALFTGG* |
Ga0126305_101810321 | 3300010036 | Serpentine Soil | MSEETRQESGGQTSSSIVLVIVLWAMVLIPLAWGVYQTLTG |
Ga0126304_108489062 | 3300010037 | Serpentine Soil | MSESESRGGQSSMVLAVVLRALVLIPLLWGIYQTLRGVVALFS* |
Ga0126309_100099555 | 3300010039 | Serpentine Soil | MSESESRRSGSQASSSTALVVVLWALVLIPLLWGVYQTLTGVVALFAA* |
Ga0126309_100145925 | 3300010039 | Serpentine Soil | MSESESRGSGGQSSTVLVVVLWALVLIPLLWGVYQTLTAVVALFS* |
Ga0126309_100455504 | 3300010039 | Serpentine Soil | MSEEARQDSGGQSSSSSMVPVVVLWALVLIPLLWGVYQTLTGVVALFTGG* |
Ga0126309_100632922 | 3300010039 | Serpentine Soil | MSERAGQEDGGRSSSSMALVVVLWALVLIPLLWGVYQTLTGVVALFTG* |
Ga0126309_100888762 | 3300010039 | Serpentine Soil | MSERAQQEGGGQTSSSMVPVVVLWALVLVPLLWGVYQTLTGVVALFAGG* |
Ga0126309_102532722 | 3300010039 | Serpentine Soil | MSESESRGGGGQSSMVAAVVLWAIVLIPLLWGVYQTLT |
Ga0126309_103752052 | 3300010039 | Serpentine Soil | MSERARQEGGEQSSSSMVLVVVLWALVLIPLLWGVYQTLTGVVALFTG* |
Ga0126308_100743233 | 3300010040 | Serpentine Soil | MSEEARQESGGQTSSSSMVLVVVLWALVLIPLLWGVYQTLTGVVALFAGG* |
Ga0126308_101873972 | 3300010040 | Serpentine Soil | MSEEARQESGGQTSSSSMVLVIVLWAMVLIPLAWGVYQTLTGVVALFAGG* |
Ga0126308_102972402 | 3300010040 | Serpentine Soil | MSEEARQESGGQTSSSSIVLVVVLWALVLIPLAWGVYQTLTGVVALFTGG* |
Ga0126308_104512292 | 3300010040 | Serpentine Soil | MSEEARQESGGQTSSSSIVLVIVLWALVLIPLAWGVYQTLTGVVALFTGG* |
Ga0126308_108077422 | 3300010040 | Serpentine Soil | MSEEARQESGGQSSSSSTVLVVVLWALVLIPLLWGVYQTLTGVVALFAGG* |
Ga0126308_109031532 | 3300010040 | Serpentine Soil | MSEEARQEGGGQTSSSSMVLVVVLWALVLIPLAWGVYQTLTGVVALFTGG* |
Ga0126312_102013672 | 3300010041 | Serpentine Soil | MSEEARQESGGQTSSRIILVIVLWALVLIPLAWGVYQTLTGVVALFTGG* |
Ga0126312_102843962 | 3300010041 | Serpentine Soil | MSESEPRGGQSGVVLAVVLWALVLLPLLWGIYQTLTGVVALFS* |
Ga0126312_108592821 | 3300010041 | Serpentine Soil | SSSMVLVVVLWAMVLIPLAWGVYQTLIGVVALFTGG* |
Ga0126314_101469284 | 3300010042 | Serpentine Soil | MSEEARQESGEQTSSGMVLVVVLWAMVLIPLVWGVYQTLTGVVALFTGG* |
Ga0126310_100126704 | 3300010044 | Serpentine Soil | MSERARQEGREQTSSSMVLVIVLWAFVLTPLLWGVYQTLTGVVALFAG* |
Ga0126310_100348921 | 3300010044 | Serpentine Soil | QEDGGQSSSSMAVVVVLWALVLIPLLWGVYQTLLGVVALFAG* |
Ga0126310_110804732 | 3300010044 | Serpentine Soil | MSEEARQESGGQSSSSSTVLVVVLWALVLIPLAWGIYQTLTGVVALFSGG* |
Ga0126321_10818352 | 3300010145 | Soil | MNERAGQEGGGQSSSSMVLVVVLWALVLIPLLWGVYQTLLGVVALFTG* |
Ga0126321_11442852 | 3300010145 | Soil | MSERAGQEGGGQSSSMVLVVVLWALVLIPLLWGVYQTLTGVAALFAGG* |
Ga0126306_105635431 | 3300010166 | Serpentine Soil | MSESELRGGQSSMVLAVVLWALVLIPLLWGIYQTLTGVVALFS* |
Ga0127502_106563142 | 3300011333 | Soil | MSEQARQESGGQTSSSSVVLVIVLWALVLLPLLWGIYQTLLGVVALFTGG* |
Ga0127502_109459481 | 3300011333 | Soil | NLARKGISMSESQSRGSGRSGIVLVVVLWALVLIPLLWGVYQTLTGVVALFS* |
Ga0136625_10801981 | 3300012091 | Polar Desert Sand | GSTNWVPVVVLWTVVLIPLLWGVYQTLTSVVALFAG* |
Ga0136632_100256222 | 3300012093 | Polar Desert Sand | MSESESRGSGGQTSSSTVLAVVLWVLVLIPLLWGVYQTLTGVVALFS* |
Ga0136615_102536412 | 3300012678 | Polar Desert Sand | MTENESGNSSWVLAVVLWALVLIPLAWGVYQTLTSVPALFTGG* |
Ga0182001_105145751 | 3300014488 | Soil | MSERAGQEGGGQSSSMVLVVVLWALVLIPLLWGVYQTLL |
Ga0182001_105467172 | 3300014488 | Soil | MSEEARQENGGQTSSSSTIFVVVLWAMVLIPLAWGVYQTLLGVVALFTG* |
Ga0183260_100032954 | 3300017787 | Polar Desert Sand | MSESESRGSGGQTSSSTVLAVVLWVLVLIPLLWGVYQTLTGVVALFS |
Ga0183260_100666614 | 3300017787 | Polar Desert Sand | MNERARQEGGEQTSSSMVLVVVLWAFVLIPLLWGVYQTLTGVGALFAG |
Ga0136617_100475885 | 3300017789 | Polar Desert Sand | MTENESGNSSWVLAVVLWALVLIPLAWGVYQTLTSVPALFTGG |
Ga0136617_101832013 | 3300017789 | Polar Desert Sand | MNERARQEGGEQTSSSMVLVVVLWAFVLIPLLWGVYQTLTGVVALFAG |
Ga0190265_135369331 | 3300018422 | Soil | MSEQARQESGGQSSSSSTVLVVVLWALVLIPLLWGVYQTLTAVVALFTGG |
Ga0190275_100539032 | 3300018432 | Soil | MSESEPRGGQSSVLLAIVLWAIVLIPLLWGIYQTLIGVVALFS |
Ga0190275_100889572 | 3300018432 | Soil | MSESESRGGQSSMVLAVVLWAIVLIPLLWGIYQTLTGVVALFS |
Ga0190275_101804663 | 3300018432 | Soil | MSESQSRGSGRSGIVLVVVLWALVLIPLLWGVYQTLTGVVALF |
Ga0190275_102179772 | 3300018432 | Soil | VSESESQGGQSGVVVAVVLWALVLLPLLWGIYQTL |
Ga0190275_102502792 | 3300018432 | Soil | MSEQARQESGGQTSSSSVVLVIVLWALVLLPLLWGIYQTLLGVVALFTGG |
Ga0190275_102618582 | 3300018432 | Soil | VSEETRQESGGQTSSSIVLVVVLWALVLIPLLWGVYQTLLGVVALFS |
Ga0190275_103276932 | 3300018432 | Soil | VSEETRQESGGQTSSSMVLVVVLWALVLIPLLWGVYQTLLGVVALFS |
Ga0190275_108395402 | 3300018432 | Soil | MSEETRQESGGQTSSSLVLVAVLWAIVLIPLLWGVYQTLLGVVALFS |
Ga0190275_116509932 | 3300018432 | Soil | VSEETRQESGGQTSSSVVLVVVLWALVLIPLLWGVYQTLLGVVALFS |
Ga0190275_118614091 | 3300018432 | Soil | MSESESRGGGSSVILVVVLWALVLIPLLWGVYQTLIGV |
Ga0190275_118852132 | 3300018432 | Soil | MSEQAQQEGGGQTSSSMVLVIVRWALVLMPLLWGVYQTLLGVVALFAGV |
Ga0190275_131121231 | 3300018432 | Soil | SQSRGSGRSGIVLVVVLWALVLIPLLWGVYQTLTGVVALFS |
Ga0190269_103579422 | 3300018465 | Soil | MSERAGQEGGGQSSSSMVLVVVLWALVLIPLLWGVYQTLTGVVALFTG |
Ga0190269_105160442 | 3300018465 | Soil | MSESESRGSGSSMVLAVVLWALVLIPLLWGVYQTLTG |
Ga0190269_109395991 | 3300018465 | Soil | EARQESGGQTSSSSIVLVIVLWALVLIPLAWGVYQTLLGVVALFTGG |
Ga0190269_112811682 | 3300018465 | Soil | MSEEARQDSGGQSSSSSMVPVVVLWALVLIPLLWGVYQTLTGVVALFTGG |
Ga0190268_101192702 | 3300018466 | Soil | MSEAQSRGSGRSGIVLVVVLWALVLIPLLWGVYQTLTGVVALFS |
Ga0190268_105568562 | 3300018466 | Soil | MSEEARQESGGQSSSSSTVLVVVLWALVLVPLAWGVYQTLTGVVALFTG |
Ga0190268_105725602 | 3300018466 | Soil | MSEQARQESGGQSSSSSTVLVVVLWALVLIPLLWGVYQTLLGVVALFS |
Ga0190268_110423391 | 3300018466 | Soil | RGGQSNMVLAVVLWALVLIPLLWGVYQTLIGVVALFS |
Ga0190268_117955582 | 3300018466 | Soil | MTEEARQEGGGQTSSSMVLVFVLWAAVLIPLLWGVYQTLLGVVALFS |
Ga0190268_123070682 | 3300018466 | Soil | MSESESRGGQSNMVLAVVLWALVLIPLLWGVYQTLIGVVALFS |
Ga0190270_100635472 | 3300018469 | Soil | MSEEARQESGGQTSSMVLVIVLWAMVLIPLAWGVYETLKGVVALFTGG |
Ga0190270_103367592 | 3300018469 | Soil | MSESQSRGSGRSGIVLVVVLWALVLIPLLWGVYQTLTGVVALFS |
Ga0190270_119782542 | 3300018469 | Soil | MSERAGQEGGGQSSSSMVLVVVLWALVLIPLLWGVYQTLLGVVALFTG |
Ga0190271_100911564 | 3300018481 | Soil | MSESQSRGSGRSGMVLVVVLWALVLIPLLWGVYQTLTGVVALFS |
Ga0190271_123090801 | 3300018481 | Soil | MSESESRGGQSSMVLVAVLWAIVLIPLLWGVYQTLLGVVALFS |
Ga0190264_101141522 | 3300019377 | Soil | MSERAQQEGGGQPSSSMVPVVVLWALVLIPLLWGVYQTLTGVVALFAGG |
Ga0190264_120672372 | 3300019377 | Soil | MSEQARQESGGQSSSSSTVLVVVLWALVLIPLLWGVYQTLLGVVALFTGG |
Ga0190267_106985062 | 3300019767 | Soil | MSESESRGGQSSMVLAVVLWALVLIPLLWGIYQTLTGVVALFS |
Ga0190267_108185351 | 3300019767 | Soil | MSEEARQESGGQTSSSSIVLVIVLWALVLIPLLWGVYQTLTGVVALFS |
Ga0190267_110449382 | 3300019767 | Soil | MSESQSRGSGQSGVVLVVVLWALVLIPLLWGVYQTLLGVIALFS |
Ga0196959_101078222 | 3300021184 | Soil | MSEEARQENGGQTSSSSTILVVVLWAMVLIPLAWGIYQTLLGVVALFTG |
Ga0299913_117697281 | 3300031229 | Soil | MSEEARQESGGQTSSSMVLVIVLWAMVLIPLAWGVYQTLIGVVALFTGG |
Ga0272433_100385632 | 3300031450 | Rock | MSESGSRRSGGQNSSSMVLVVGLWTIVLIPLLWGVYQALTSVAALFGG |
Ga0307408_1022191491 | 3300031548 | Rhizosphere | MSEEARQESGGQTSSSIILVIVLWVLVLIPLAWGVYQTLTGVVALFTGG |
Ga0307413_104589182 | 3300031824 | Rhizosphere | MSEEARQESGGQTSSSIILVIVLWALVLIPLAWGVYQTLTGVVALFTGG |
Ga0307413_106985372 | 3300031824 | Rhizosphere | MSEEARQESGGQTSSSSMVLVVVLWALVLIPLAWGVYQTLTGVVALFTGG |
Ga0307406_112861152 | 3300031901 | Rhizosphere | MSEEARQESGGQTSSSSMVLVIVLWAMVLIPLAWGVYQTLTGVVALFAGG |
Ga0307407_105060492 | 3300031903 | Rhizosphere | MSEEARQESGGQTSSSSMVLVIVLWALVLIPLAWGVYQTLTGVVALFTGG |
Ga0307407_115968062 | 3300031903 | Rhizosphere | MSEEARQESGGQTSSSSIVLVIVLWALVLIPLAWGVYQTLTGVVALFTGG |
Ga0307409_1020890542 | 3300031995 | Rhizosphere | MSEEARQEGGGQTSSSSMVLVVVLWALVLIPLAWGVYQTLTGVVALFTGG |
Ga0307415_1018052952 | 3300032126 | Rhizosphere | MSEETRQESGGQTSSSIVLVIVLWAMVLIPLAWGVYQTLTGVVALFTGG |
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